Citrus Sinensis ID: 041782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-
Protein Sequence
MGLSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRRRKRGRRN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcccccccccccccEEEccccccEEEEcccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHcHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccEEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEHHHHHHHccHHHHHHHHHcccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccccccccHHHHccccccEEEccccccccccccHHHcccccccccccccccccccEEEEcccccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHHccccccEEEEEccccccccccccccccccHHHHEEEccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEcccccccccccHHHcccccccEEEEcccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHcccccHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccccHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccHEEEEEcccccccccccHHHHHccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGLSFCFLTAFSLLLFHITnahlasplhqlcHAGERSALLQFKESLTINKEASAHRSAHAkfaswnleeedrdccswdgvkcnedtghvikLNLTssciygsinsssslfhlRHLEWlsladnnfnyskipseimnlssfsgqvpslgnltklkclelsqnnfssphsasfsWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFdlnqltgpipnwlanLNRLTILSlksnqlrgylpsqigsltqLTALDlscnqfqgpvpssiselkrleyldlhsnnlsgnvYIEELLPKLKSLIVLFLSAnnlslitrNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLsankipgkipgwllnvttgnlQFVNLSYNlitgfdrgSVVLLWTDLVTLDLrsnklqgplpippestihylvsnnlltgklapwlcnlnslrvldlshnflsgvlpqclsnskifknatnlKMIDLSHnllqgriprslanctmlefldlgnnqiadifpswlgtlpELKVLMLQFNRfhgeigepdtgfvfpklriidlshnrfsgklpskyFQCWNAIKVANKSQLKymqdqpgqslnyilpsssayifdYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIIlsnnkligkiptsiselkglnclnlsgnnllghipsslgnltVLESldlsnnnlsgeiPRQLAELTslavfdvsdnnltgqipqgkqfntfenssfegnpglcgkplsrnceisessqkedqdsetpfeFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRvqgrrrkrgrrn
Flexible Loop (DISEMBL)
MGLSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISessqkedqdsetPFEFGWKIVLTGYASGLIVGVVIGQTFTTRInawfaktlgmrvqgrrrkrgrrn
Low Complexity Region (SEG)
MGLSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTssciygsinssssLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKefldflndqdqlelldlSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSvvllwtdlvtldlRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISElkglnclnlsgnnllgHIPSSLGNLTVLEsldlsnnnlsGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCeisessqkedqdseTPFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLgmrvqgrrrkrgrrN
Disordered region (IsUnstruct)
**LSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTIN********AHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYG********FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNF***HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT************************************************FEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMR************
Disordered Region (DISOPRED)
***SFCFLTAFSLLLFHITNAHLAS********GERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKV*******YMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGK**************************WKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQ***R******
Disordered Region (DISEMBL)
MGLSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINK**********KFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRN****************PFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMR************
Disordered Region (DISPRO)
**LSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNC***************PFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGR********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLSFCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRRRKRGRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	821	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.902	0.874	0.339	1e-106
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.799	0.899	0.295	2e-59
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.885	0.582	0.295	1e-58
Q9FL28	1173	LRR receptor-like serine/	no	no	0.785	0.549	0.298	3e-58
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.781	0.582	0.329	8e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.862	0.593	0.302	3e-56
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.783	0.587	0.289	8e-56
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.768	0.555	0.306	9e-56
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.838	0.549	0.296	1e-55
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.820	0.600	0.303	4e-54

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 291/856 (33%), Positives = 426/856 (49%), Gaps = 115/856 (13%)

Query: 23  LASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKC 82
           LAS     C   +R ALL+F+    IN  AS H     +   WN   +  DCC W+GV C
Sbjct: 26  LASSSPHFCRDDQRDALLEFRGEFPIN--ASWHIMNQWR-GPWN---KSTDCCLWNGVTC 79

Query: 83  NEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSG 142
           N+ +G VI L++ ++ +   + ++SSLF L++L  L L + N  Y +IPS          
Sbjct: 80  NDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNL-YGEIPS---------- 128

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
              SLGNL+ L  + L  N F     AS   I    +L  L LAN  L GE PS L NL+
Sbjct: 129 ---SLGNLSHLTLVNLYFNKFVGEIPAS---IGNLNQLRHLILANNVLTGEIPSSLGNLS 182

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
           +L  +    N+L G IP+ + +L +L  LSL SN L G +PS +G+L+ L  L L+ NQ 
Sbjct: 183 RLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQL 242

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL-------- 314
            G VP+SI  L  L  +   +N+LSGN+ I      L  L +  LS+NN +         
Sbjct: 243 VGEVPASIGNLIELRVMSFENNSLSGNIPIS--FANLTKLSIFVLSSNNFTSTFPFDMSI 300

Query: 315 --------ITRNTVNIRLQNKFVFL-GLASCNLKEF-----LDFLNDQDQLELLDL--SA 358
                   ++ N+ +       + +  L S  L+E      ++F N     +L DL    
Sbjct: 301 FHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGR 360

Query: 359 NKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418
           N++ G IP  +  +   NL+ +++S+N  TG    ++  L  +L+ LDL  N L+G +P 
Sbjct: 361 NRLHGPIPESISRLL--NLEELDISHNNFTGAIPPTISKL-VNLLHLDLSKNNLEGEVPA 417

Query: 419 ----------------------PPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
                                   E+ I  L +++N   G +   +C L+SL  LDLS+N
Sbjct: 418 CLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNN 477

Query: 456 FLSGVLPQCLSN-------------------SKIFKNATNLKMIDLSHNLLQGRIPRSLA 496
             SG +P C+ N                     IF  AT L  +D+SHN L+G+ P+SL 
Sbjct: 478 LFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLI 537

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL 556
           NC  LE +++ +N+I DIFPSWL +LP L VL L+ N+F+G +        F  LRIID+
Sbjct: 538 NCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDI 597

Query: 557 SHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYA 616
           SHN FSG LP  YF  W  +    +   +YM +                 + Y+  Y   
Sbjct: 598 SHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE----------------FWRYADSYY-- 639

Query: 617 YSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP 676
           + + MVNKG++M++ ++      I  S NK+ G IP S+  LK L  LNLSGN     IP
Sbjct: 640 HEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIP 699

Query: 677 SSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSS 736
             L NLT LE+LD+S N LSG+IP+ LA L+ L+  + S N L G +P+G QF   + SS
Sbjct: 700 RFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSS 759

Query: 737 FEGNPGLCG-KPLSRNC-EISESSQ-KEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQT 793
           F  NPGL G + + R+   ++ +SQ  ED        F W      Y  G++ G+VIG  
Sbjct: 760 FLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHF 819

Query: 794 FTTRINAWFAKTLGMR 809
           +T+  + WF +  G +
Sbjct: 820 YTSHNHEWFTEKFGRK 835

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 234/791 (29%), Positives = 358/791 (45%), Gaps = 135/791 (17%)

Query: 28  HQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDT- 86
             +C+  +R +L+ F          S + S+     +WNL     DCCSW+G+ C++ + 
Sbjct: 43  EAVCNLQDRESLIWF----------SGNVSSSVSPLNWNLS---IDCCSWEGITCDDSSD 89

Query: 87  GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPS--------EIMNLS 138
            HV  ++L S  + G++  +SS+ ++  L  L L+ N  +    P          I+NLS
Sbjct: 90  SHVTVISLPSRGLSGTL--ASSVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLS 147

Query: 139 --SFSGQVP---SLGNLT----KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN 189
             SF+G++P   + GN +     ++ L+LS N        S  ++     L    ++N +
Sbjct: 148 YNSFNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEILRSSVYLQGTINLISFNVSNNS 207

Query: 190 LIGEFPSWLMNLT-QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS 248
             G  PS++   + QL+ ++F  N  +G I   L    RLT+L    N L G +PS+I +
Sbjct: 208 FTGPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGRCLRLTVLQAGFNNLSGVIPSEIYN 267

Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308
           L++L  L L  NQ  G + ++I+ L++L  L L+SN+L G + ++  +  L SL  L L 
Sbjct: 268 LSELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMD--IGNLSSLRSLQLH 325

Query: 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGW 368
            NN+             N  V L LA+C             +L  L+L  N++ G +   
Sbjct: 326 INNI-------------NGTVPLSLANCT------------KLVKLNLRVNQLGGGLT-- 358

Query: 369 LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP---IPPESTIH 425
                   L+F  L                   L  LDL +N   G LP      +S   
Sbjct: 359 -------ELEFSQLQ-----------------SLKVLDLGNNSFTGALPDKIFSCKSLTA 394

Query: 426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485
              + N LTG+++P +  L SL  + LS N L+ +         I +    L  + L+ N
Sbjct: 395 IRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITGAL----SILQGCRKLSTLILAKN 450

Query: 486 LLQGRIPR-----SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG 540
                +P      S      L    +G  ++    P+WL  L +++V+ L  NRF G I 
Sbjct: 451 FYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSI- 509

Query: 541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI-L 599
            P      P L  +DLS N  +G+LP + FQ            L+ +  Q     NY+ L
Sbjct: 510 -PGWLGTLPDLFYLDLSDNLLTGELPKELFQ------------LRALMSQKITENNYLEL 556

Query: 600 PSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELK 659
           P     IF           +   N      Y K+ +F   I +  N L G IP  + +LK
Sbjct: 557 P-----IF-----------LNPNNVTTNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLK 600

Query: 660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719
            L+ L L GNNL G IP  L NLT LE LDLSNNNLSG IP  L  L  L+ F+V++N+L
Sbjct: 601 VLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSL 660

Query: 720 TGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSETPFEFGWKIVLTG 779
            G IP   QF+TF  ++FEGNP LCG  L  +C+ + +  KE+ +    F  G  I   G
Sbjct: 661 EGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRA--KENDELNRTFLMGIAI---G 715

Query: 780 YASGLIVGVVI 790
           Y    +  +V+
Sbjct: 716 YFLSFVSILVV 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 273/924 (29%), Positives = 401/924 (43%), Gaps = 197/924 (21%)

Query: 38  ALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTG--HVIKLNLT 95
            LL+ K+SL  N +             WN   ++ + CSW GV C ++TG   VI LNLT
Sbjct: 29  TLLEVKKSLVTNPQEDD------PLRQWN--SDNINYCSWTGVTC-DNTGLFRVIALNLT 79

Query: 96  SSCIYGSINSSSSLF-HLRHLEWLSLADNNFNYSKIPSEIMNLSSF----------SGQV 144
              + GSI+     F +L HL+   L+ NN     IP+ + NL+S           +G++
Sbjct: 80  GLGLTGSISPWFGRFDNLIHLD---LSSNNL-VGPIPTALSNLTSLESLFLFSNQLTGEI 135

Query: 145 PS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ 203
           PS LG+L  ++ L +  N        +   +     L  LALA+  L G  PS L  L +
Sbjct: 136 PSQLGSLVNIRSLRIGDNELVGDIPET---LGNLVNLQMLALASCRLTGPIPSQLGRLVR 192

Query: 204 LTYINFDLNQLTGPIPNWLANLNRLT------------------------ILSLKSNQLR 239
           +  +    N L GPIP  L N + LT                        IL+L +N L 
Sbjct: 193 VQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLT 252

Query: 240 GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKL 299
           G +PSQ+G ++QL  L L  NQ QG +P S+++L  L+ LDL +NNL+G   I E    +
Sbjct: 253 GEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGE--IPEEFWNM 310

Query: 300 KSLIVLFLSANNLS-----LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELL 354
             L+ L L+ N+LS      I  N  N+    + V  G       E    L+    L+ L
Sbjct: 311 SQLLDLVLANNHLSGSLPKSICSNNTNLE---QLVLSGTQLSG--EIPVELSKCQSLKQL 365

Query: 355 DLSANKIPGKIPGWLLNVTT----------------------GNLQFVNLSYN------- 385
           DLS N + G IP  L  +                         NLQ++ L +N       
Sbjct: 366 DLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

Query: 386 -LITGFDRGSVVLLW---------------TDLVTLDLRSNKLQGPLPIPPESTIHYL-- 427
             I+   +  V+ L+               T L  +D+  N  +G +P P    +  L  
Sbjct: 426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIP-PSIGRLKELNL 484

Query: 428 --VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP------QCLSNSKIFKNA----- 474
             +  N L G L   L N + L +LDL+ N LSG +P      + L    ++ N+     
Sbjct: 485 LHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNL 544

Query: 475 -------TNLKMIDLSHNLLQG-----------------------RIPRSLANCTMLEFL 504
                   NL  I+LSHN L G                        IP  L N   L+ L
Sbjct: 545 PDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRL 604

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
            LG NQ+    P  LG + EL +L +  N   G I  P    +  KL  IDL++N  SG 
Sbjct: 605 RLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTI--PLQLVLCKKLTHIDLNNNFLSGP 662

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQ--------------------PGQSLNYILPSSSA 604
           +P      W   K++   +LK   +Q                     G SLN  +P    
Sbjct: 663 IPP-----WLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQE-- 714

Query: 605 YIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGL-NC 663
            I +     +        +  +    GK+S  L  + LS N L G+IP  I +L+ L + 
Sbjct: 715 -IGNLGALNVLNLDKNQFSGSLPQAMGKLSK-LYELRLSRNSLTGEIPVEIGQLQDLQSA 772

Query: 664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI 723
           L+LS NN  G IPS++G L+ LE+LDLS+N L+GE+P  + ++ SL   +VS NNL G++
Sbjct: 773 LDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832

Query: 724 PQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSETPFEFGWKIVLTGYASG 783
              KQF+ +   SF GN GLCG PLSR   +  +++++   + +         LT  A G
Sbjct: 833 K--KQFSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQQGLSARSVVIISAISALT--AIG 888

Query: 784 LIVGVVIGQTFTTRINAWFAKTLG 807
           L++ +VI   F  R +  F K +G
Sbjct: 889 LMI-LVIALFFKQRHD--FFKKVG 909

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 232/777 (29%), Positives = 349/777 (44%), Gaps = 132/777 (16%)

Query: 75  CSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEI 134
           C+W G+ C + TGHV+ ++L    + G +  S ++ +L +L+ L L  N+F   KIP+EI
Sbjct: 61  CNWTGITC-DSTGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSFT-GKIPAEI 116

Query: 135 MNLSS----------FSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWL 183
             L+           FSG +PS +  L  +  L+L  N  S         I K + L  +
Sbjct: 117 GKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEE---ICKTSSLVLI 173

Query: 184 ALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLP 243
                NL G+ P  L +L  L       N LTG IP  +  L  LT L L  NQL G +P
Sbjct: 174 GFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIP 233

Query: 244 SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLI 303
              G+L  L +L L+ N  +G +P+ I     L  L+L+ N L+G +  E  L  L  L 
Sbjct: 234 RDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAE--LGNLVQLQ 291

Query: 304 VLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL----KEFLDFLNDQDQLELLDLSAN 359
            L +  N L+    +++  RL  +   LGL+  +L     E + FL   + LE+L L +N
Sbjct: 292 ALRIYKNKLTSSIPSSL-FRL-TQLTHLGLSENHLVGPISEEIGFL---ESLEVLTLHSN 346

Query: 360 KIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL--------------------- 398
              G+ P  + N+   NL  + + +N I+G     + LL                     
Sbjct: 347 NFTGEFPQSITNLR--NLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSI 404

Query: 399 --WTDLVTLDLRSNKLQGPLP---------------------IPPE----STIHYL-VSN 430
              T L  LDL  N++ G +P                     IP +    S +  L V++
Sbjct: 405 SNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVAD 464

Query: 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR 490
           N LTG L P +  L  LR+L +S+N L+G +P+ + N K      +L ++ L  N   GR
Sbjct: 465 NNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLK------DLNILYLHSNGFTGR 518

Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           IPR ++N T+L+ L + +N +    P  +  +  L VL L  N+F G+I  P        
Sbjct: 519 IPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQI--PALFSKLES 576

Query: 551 LRIIDLSHNRFSGKLPS--KYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD 608
           L  + L  N+F+G +P+  K     N   +++      +   PG+ L  +          
Sbjct: 577 LTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTI---PGELLASL---------- 623

Query: 609 YSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSG 668
            ++Q    +S  ++   I    GK+   +  I LSNN   G IP S+   K +  L+ S 
Sbjct: 624 KNMQLYLNFSNNLLTGTIPKELGKLE-MVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQ 682

Query: 669 NNLLGHIPS-------------------------SLGNLTVLESLDLSNNNLSGEIPRQL 703
           NNL GHIP                          S GN+T L SLDLS+NNL+GEIP  L
Sbjct: 683 NNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESL 742

Query: 704 AELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCG--KPLSRNCEISESS 758
           A L++L    ++ NNL G +P+   F     S   GN  LCG  KPL + C I + S
Sbjct: 743 ANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPL-KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  222 bits (566), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 238/722 (32%), Positives = 343/722 (47%), Gaps = 80/722 (11%)

Query: 58  AHAKFASWNLEEEDRDCCSWDGVKCNEDTG--HVIKLNLTSSCIYGSINSSSSLFHLRHL 115
           A     +WN    D   C W GV C+  +    V+ LNL+S  + G +  S S+  L HL
Sbjct: 44  AKQNLRNWN--SNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKL--SPSIGGLVHL 99

Query: 116 EWLSLADNNFNYSKIPSEIMNLSS----------FSGQVP-SLGNLTKLKCLELSQNNFS 164
           + L L+ N  +  KIP EI N SS          F G++P  +G L  L+ L +  N  S
Sbjct: 100 KQLDLSYNGLS-GKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS 158

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN 224
                    I     LS L   + N+ G+ P  + NL +LT      N ++G +P+ +  
Sbjct: 159 GSLPVE---IGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGG 215

Query: 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
              L +L L  NQL G LP +IG L +L+ + L  N+F G +P  IS    LE L L+ N
Sbjct: 216 CESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKN 275

Query: 285 NLSGNVYIEELLPKLKSLIVLFLSANNL-SLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
            L G +  E  L  L+SL  L+L  N L   I R   N+    +  F   A     E   
Sbjct: 276 QLVGPIPKE--LGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTG--EIPL 331

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG-------FDRGSVV 396
            L + + LELL L  N++ G IP  L   T  NL  ++LS N +TG       + RG   
Sbjct: 332 ELGNIEGLELLYLFENQLTGTIPVEL--STLKNLSKLDLSINALTGPIPLGFQYLRG--- 386

Query: 397 LLWTDLVTLDLRSNKLQGPLPIPPE----STIHYL-VSNNLLTGKLAPWLCNLNSLRVLD 451
                L  L L  N L G   IPP+    S +  L +S+N L+G++  +LC  +++ +L+
Sbjct: 387 -----LFMLQLFQNSLSG--TIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILN 439

Query: 452 LSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQI 511
           L  N LSG +P  ++  K       L  + L+ N L GR P +L     +  ++LG N+ 
Sbjct: 440 LGTNNLSGNIPTGITTCK------TLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRF 493

Query: 512 ADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQ 571
               P  +G    L+ L L  N F GE+  P    +  +L  +++S N+ +G++PS+ F 
Sbjct: 494 RGSIPREVGNCSALQRLQLADNGFTGEL--PREIGMLSQLGTLNISSNKLTGEVPSEIFN 551

Query: 572 CWNAIKVANKSQLKYMQ--DQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN 629
           C            K +Q  D    + +  LPS    ++   L      S   ++  I + 
Sbjct: 552 C------------KMLQRLDMCCNNFSGTLPSEVGSLYQLEL---LKLSNNNLSGTIPVA 596

Query: 630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLN-CLNLSGNNLLGHIPSSLGNLTVLESL 688
            G +S  LT + +  N   G IP  +  L GL   LNLS N L G IP  L NL +LE L
Sbjct: 597 LGNLSR-LTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFL 655

Query: 689 DLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
            L+NNNLSGEIP   A L+SL  ++ S N+LTG IP  +  +    SSF GN GLCG PL
Sbjct: 656 LLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISM---SSFIGNEGLCGPPL 712

Query: 749 SR 750
           ++
Sbjct: 713 NQ 714

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  220 bits (561), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 258/853 (30%), Positives = 380/853 (44%), Gaps = 145/853 (16%)

Query: 75  CSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEI 134
           C W GV C    G V  L+L S  + G I    S   L++L  L LA N F+  KIP EI
Sbjct: 55  CDWVGVTC--LLGRVNSLSLPSLSLRGQIPKEIS--SLKNLRELCLAGNQFS-GKIPPEI 109

Query: 135 MNLS----------SFSGQVPSL-GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWL 183
            NL           S +G +P L   L +L  L+LS N+FS     SF        LS L
Sbjct: 110 WNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSF--FISLPALSSL 167

Query: 184 ALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLP 243
            ++N +L GE P  +  L+ L+ +   LN  +G IP+ + N++ L   +  S    G LP
Sbjct: 168 DVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLP 227

Query: 244 SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLI 303
            +I  L  L  LDLS N  +  +P S  EL  L  L+L S  L G +  E  L   KSL 
Sbjct: 228 KEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPE--LGNCKSLK 285

Query: 304 VLFLSANNLS-----------LIT----RNTVNIRLQNKF----VFLGLASCNLK---EF 341
            L LS N+LS           L+T    RN ++  L +      V   L   N +   E 
Sbjct: 286 SLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEI 345

Query: 342 LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG-----FDR---- 392
              + D   L+ L L++N + G IP  L    +G+L+ ++LS NL++G     FD     
Sbjct: 346 PHEIEDCPMLKHLSLASNLLSGSIPREL--CGSGSLEAIDLSGNLLSGTIEEVFDGCSSL 403

Query: 393 GSVVL------------LWT-DLVTLDLRSNKLQGPLPI---PPESTIHYLVSNNLLTGK 436
           G ++L            LW   L+ LDL SN   G +P       + + +  S N L G 
Sbjct: 404 GELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGY 463

Query: 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA 496
           L   + N  SL+ L LS N L+G +P+ +         T+L +++L+ N+ QG+IP  L 
Sbjct: 464 LPAEIGNAASLKRLVLSDNQLTGEIPREIGK------LTSLSVLNLNANMFQGKIPVELG 517

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV----FPKLR 552
           +CT L  LDLG+N +    P  +  L +L+ L+L +N   G I    + +      P L 
Sbjct: 518 DCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLS 577

Query: 553 ------IIDLSHNRFSGKLPSKYFQCWNAIKV------------ANKSQLKYMQ--DQPG 592
                 I DLS+NR SG +P +  +C   +++            A+ S+L  +   D  G
Sbjct: 578 FLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSG 637

Query: 593 QSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP 652
            +L   +P          LQ +   +   +N  I  ++G + + L  + L+ NKL G +P
Sbjct: 638 NALTGSIPKEMGN--SLKLQGLNLAN-NQLNGHIPESFGLLGS-LVKLNLTKNKLDGPVP 693

Query: 653 TSISELKGLNCLNLSGNNL------------------------LGHIPSSLGNLTVLESL 688
            S+  LK L  ++LS NNL                         G IPS LGNLT LE L
Sbjct: 694 ASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYL 753

Query: 689 DLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
           D+S N LSGEIP ++  L +L   +++ NNL G++P          +   GN  LCG+ +
Sbjct: 754 DVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVV 813

Query: 749 SRNCEISESSQKEDQDSETPFEFGWKIVLTGYASGLIVG-VVIGQTFTTRINAW-FAKTL 806
             +C+I            T     W I      +GL++G  +I   F   +  W   K +
Sbjct: 814 GSDCKI----------EGTKLRSAWGI------AGLMLGFTIIVFVFVFSLRRWAMTKRV 857

Query: 807 GMRVQGRRRKRGR 819
             R    R +  R
Sbjct: 858 KQRDDPERMEESR 870

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  219 bits (557), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 228/788 (28%), Positives = 346/788 (43%), Gaps = 145/788 (18%)

Query: 5   FCFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFAS 64
           F  L   S+ +F +T +        +C+  +R +LL F          S + S+      
Sbjct: 28  FVLLYVLSISVFFLTVSE------AVCNLQDRDSLLWF----------SGNVSSPVSPLH 71

Query: 65  WNLEEEDRDCCSWDGVKCNED-TGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADN 123
           WN      DCCSW+G+ C++     V  + L+S  + G  N  SS+  L+ L  L L+ N
Sbjct: 72  WN---SSIDCCSWEGISCDKSPENRVTSIILSSRGLSG--NLPSSVLDLQRLSRLDLSHN 126

Query: 124 NFNYSKIPS--------EIMNLS--SFSGQVP---SLGN----LTKLKCLELSQNNFSSP 166
             +    P          +++LS  SF G++P   S GN    +  ++ ++LS N     
Sbjct: 127 RLSGPLPPGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGE 186

Query: 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT-QLTYINFDLNQLTGPIPNWLANL 225
             +S  ++     L+   ++N +  G  PS++   + QLT ++F  N  +G +   L+  
Sbjct: 187 ILSSSVFLQGAFNLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFSGDLSQELSRC 246

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
           +RL++L    N L G +P +I +L +L  L L  N+  G + + I+ L +L  L+L+SN+
Sbjct: 247 SRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNH 306

Query: 286 LSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQN--KFVFLGLASCNLKEFL- 342
           + G   I + + KL  L  L L  NNL      ++ + L N  K V L L    L   L 
Sbjct: 307 IEGE--IPKDIGKLSKLSSLQLHVNNL----MGSIPVSLANCTKLVKLNLRVNQLGGTLS 360

Query: 343 --DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT 400
             DF   Q  L +LDL  N   G+ P                           S V    
Sbjct: 361 AIDFSRFQ-SLSILDLGNNSFTGEFP---------------------------STVYSCK 392

Query: 401 DLVTLDLRSNKLQG---PLPIPPESTIHYLVSNNL---LTGKLAPWLCNLNSLRVLDLSH 454
            +  +    NKL G   P  +  ES   +  S+N    LTG L+  L     L  L ++ 
Sbjct: 393 MMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLTGALS-ILQGCKKLSTLIMAK 451

Query: 455 NFLSGVLPQCLSNSKIFKNA--TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA 512
           NF    +P   SN    ++    +L++  +    L G IP  L     +E +DL  N+  
Sbjct: 452 NFYDETVP---SNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFV 508

Query: 513 DIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQC 572
              P WLGTLP+L  L                          DLS N  +G+LP + FQ 
Sbjct: 509 GTIPGWLGTLPDLFYL--------------------------DLSDNFLTGELPKELFQL 542

Query: 573 WNAI--KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY 630
              +  K  + ++  Y++          LP     +F           +   N      Y
Sbjct: 543 RALMSQKAYDATERNYLE----------LP-----VF-----------VNPNNVTTNQQY 576

Query: 631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDL 690
            ++S+    I +  N L G IP  + +LK L+ L L GNN  G IP  L NLT LE LDL
Sbjct: 577 NQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDL 636

Query: 691 SNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSR 750
           SNNNLSG IP  L  L  L+ F+V++N L+G IP G QF+TF  ++FEGNP LCG  L  
Sbjct: 637 SNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLT 696

Query: 751 NCEISESS 758
           +C+ ++ S
Sbjct: 697 SCDPTQHS 704

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  219 bits (557), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 230/750 (30%), Positives = 340/750 (45%), Gaps = 119/750 (15%)

Query: 75  CSWDGVKCNEDTGH-VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSE 133
           C W GV C   T H V ++ L    + G I  S  +  LR L  LSL  N+FN   IP+ 
Sbjct: 58  CDWRGVGC---TNHRVTEIRLPRLQLSGRI--SDRISGLRMLRKLSLRSNSFN-GTIPTS 111

Query: 134 I----------MNLSSFSGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
           +          +  +S SG++P ++ NLT L+   ++ N  S         +   + L +
Sbjct: 112 LAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIP-----VGLPSSLQF 166

Query: 183 LALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL 242
           L +++    G+ PS L NLTQL  +N   NQLTG IP  L NL  L  L L  N L+G L
Sbjct: 167 LDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTL 226

Query: 243 PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL 302
           PS I + + L  L  S N+  G +P++   L +LE L L +NN SG V          SL
Sbjct: 227 PSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN--TSL 284

Query: 303 IVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIP 362
            ++ L  N  S I R                A+C           +  L++LDL  N+I 
Sbjct: 285 TIVQLGFNAFSDIVRPETT------------ANC-----------RTGLQVLDLQENRIS 321

Query: 363 GKIPGWLLNVTTGNLQFVNLSYNLITGF---DRGSVVLLWTDLVTLDLRSNKLQGPLPIP 419
           G+ P WL N+ +  L+ +++S NL +G    D G++      L  L L +N L G +P+ 
Sbjct: 322 GRFPLWLTNILS--LKNLDVSGNLFSGEIPPDIGNL----KRLEELKLANNSLTGEIPVE 375

Query: 420 PESTIHYLV---SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKN--- 473
            +      V     N L G++  +L  + +L+VL L  N  SG +P  + N +  +    
Sbjct: 376 IKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNL 435

Query: 474 ---------------ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518
                           T+L  +DLS N   G +P S++N + L FL+L  N  +   P+ 
Sbjct: 436 GENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPAS 495

Query: 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKV 578
           +G L +L  L L      GE+    +G   P +++I L  N FSG +P + F    +++ 
Sbjct: 496 VGNLFKLTALDLSKQNMSGEVPVELSG--LPNVQVIALQGNNFSGVVP-EGFSSLVSLRY 552

Query: 579 ANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLT 638
            N S   +  + P Q+  ++    S  + D             ++  I    G  S  L 
Sbjct: 553 VNLSSNSFSGEIP-QTFGFLRLLVSLSLSD-----------NHISGSIPPEIGNCSA-LE 599

Query: 639 GIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGH------------------------ 674
            + L +N+L+G IP  +S L  L  L+L  NNL G                         
Sbjct: 600 VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGV 659

Query: 675 IPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTS-LAVFDVSDNNLTGQIPQGKQFNTFE 733
           IP S   L+ L  +DLS NNL+GEIP  LA ++S L  F+VS NNL G+IP         
Sbjct: 660 IPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINN 719

Query: 734 NSSFEGNPGLCGKPLSRNCEISESSQKEDQ 763
            S F GN  LCGKPL+R CE S +  K+ +
Sbjct: 720 TSEFSGNTELCGKPLNRRCESSTAEGKKKK 749

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 263/887 (29%), Positives = 384/887 (43%), Gaps = 199/887 (22%)

Query: 32  HAGERS---ALLQFKESLTIN-KEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTG 87
             G+R     LL+ K S   N KE    R  ++   S+         C+W GV C     
Sbjct: 23  QPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSY---------CNWTGVTCGGR-- 71

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-------- 139
            +I LNL+   + GSI  S S+    +L  + L+ N      IP+ + NLSS        
Sbjct: 72  EIIGLNLSGLGLTGSI--SPSIGRFNNLIHIDLSSNRL-VGPIPTTLSNLSSSLESLHLF 128

Query: 140 ---FSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFP 195
               SG +PS LG+L  LK L+L  N  +     +F  +     L  LALA+  L G  P
Sbjct: 129 SNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVN---LQMLALASCRLTGLIP 185

Query: 196 SWLMNLTQLTYINFDLNQLTGPIPNWLAN---------------------LNRLT---IL 231
           S    L QL  +    N+L GPIP  + N                     LNRL     L
Sbjct: 186 SRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTL 245

Query: 232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY 291
           +L  N   G +PSQ+G L  +  L+L  NQ QG +P  ++EL  L+ LDL SNNL+G ++
Sbjct: 246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query: 292 IEEL-------------------LPKL-----KSLIVLFLSANNLSL------------- 314
            EE                    LPK       SL  LFLS   LS              
Sbjct: 306 -EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLK 364

Query: 315 ---ITRNTV---------------NIRLQNKFVFLGLAS-----CNLKEFLDFLNDQD-- 349
              ++ NT+               N+ L N  +   L+S      NL+EF  + N+ +  
Sbjct: 365 LLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK 424

Query: 350 ---------QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT 400
                    +LE++ L  N+  G++P  + N T   LQ ++   N ++G    S+  L  
Sbjct: 425 VPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCT--RLQEIDWYGNRLSGEIPSSIGRL-K 481

Query: 401 DLVTLDLRSNKLQGPLP----------------------IPPE-----STIHYLVSNNLL 433
           DL  L LR N+L G +P                      IP       +   +++ NN L
Sbjct: 482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 434 TGKLAPWLCNLNSLRVLDLSHNFLSG-VLPQCLSNSKI----------------FKNATN 476
            G L   L NL +L  ++ S N  +G + P C S+S +                   +TN
Sbjct: 542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 477 LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
           L  + L  N   GRIPR+    + L  LD+  N ++ I P  LG   +L  + L  N   
Sbjct: 602 LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLS 661

Query: 537 GEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLN 596
           G I  P      P L  + LS N+F G LP++ F   N + +       ++    G SLN
Sbjct: 662 GVI--PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTL-------FLD---GNSLN 709

Query: 597 YILPSSSAYIFDYSLQYIYAYSI--TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654
             +P         +LQ + A ++    ++  +    GK+S     + LS N L G+IP  
Sbjct: 710 GSIPQEIG-----NLQALNALNLEENQLSGPLPSTIGKLSKLFE-LRLSRNALTGEIPVE 763

Query: 655 ISELKGL-NCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD 713
           I +L+ L + L+LS NN  G IPS++  L  LESLDLS+N L GE+P Q+ ++ SL   +
Sbjct: 764 IGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLN 823

Query: 714 VSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQK 760
           +S NNL G++   KQF+ ++  +F GN GLCG PLS        +Q+
Sbjct: 824 LSYNNLEGKLK--KQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQR 868

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 231/762 (30%), Positives = 345/762 (45%), Gaps = 88/762 (11%)

Query: 63  ASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLAD 122
           ++W +   +   C+W G+ C +D+ +V  LN T S + G +     +  L+ L+ L L+ 
Sbjct: 52  STWKINASEATPCNWFGITC-DDSKNVASLNFTRSRVSGQL--GPEIGELKSLQILDLST 108

Query: 123 NNFNYSKIPSEIMNLSSFSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELS 181
           NN               FSG +PS LGN TKL  L+LS+N FS     +   + K+ E+ 
Sbjct: 109 NN---------------FSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSL-KRLEVL 152

Query: 182 WLALANIN-LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG 240
           +L    IN L GE P  L  + +L  +  D N LTGPIP  + +   L  LS+ +NQ  G
Sbjct: 153 YLY---INFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSG 209

Query: 241 YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLK 300
            +P  IG+ + L  L L  N+  G +P S++ L  L  L + +N+L G V      P  K
Sbjct: 210 NIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGS--PNCK 267

Query: 301 SLIVLFLSANNLSLITRNTVN--IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSA 358
           +L+ L LS N         +     L    +  G  S  +   L  L +   L +L+LS 
Sbjct: 268 NLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKN---LTILNLSE 324

Query: 359 NKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418
           N++ G IP  L N ++ NL  +N    L+ G    S +     L +L+L  N+  G +PI
Sbjct: 325 NRLSGSIPAELGNCSSLNLLKLN-DNQLVGGIP--SALGKLRKLESLELFENRFSGEIPI 381

Query: 419 ---PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNAT 475
                +S    LV  N LTG+L   +  +  L++  L +N   G +P  L  +      +
Sbjct: 382 EIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVN------S 435

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           +L+ +D   N L G IP +L +   L  L+LG+N +    P+ +G    ++  +L+ N  
Sbjct: 436 SLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNL 495

Query: 536 HGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPG--- 592
            G + E         L  +D + N F G +P     C N   + N S+ ++    P    
Sbjct: 496 SGLLPEFSQDH---SLSFLDFNSNNFEGPIPGSLGSCKNLSSI-NLSRNRFTGQIPPQLG 551

Query: 593 --QSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV-SNF-----LTGIILSN 644
             Q+L Y+  S +        Q     S+   + G     G V SNF     LT ++LS 
Sbjct: 552 NLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSE 611

Query: 645 NKLIGKIPTSISELKGLNC-------------------------LNLSGNNLLGHIPSSL 679
           N+  G IP  + ELK L+                          L+LSGN L G IP+ L
Sbjct: 612 NRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKL 671

Query: 680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTF-ENSSFE 738
           G+L  L  L++SNNNL+G +   L  LTSL   DVS+N  TG IP   +     E SSF 
Sbjct: 672 GDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIPDNLEGQLLSEPSSFS 730

Query: 739 GNPGLCGKPLSRNCEISESSQKEDQDSETPFEFG---WKIVL 777
           GNP LC          S S+ K  +D     + G   W+IVL
Sbjct: 731 GNPNLCIPHSFSASNNSRSALKYCKDQSKSRKSGLSTWQIVL 772

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	821
359490156	886	PREDICTED: receptor-like protein 12-like	0.942	0.873	0.462	0.0
224140513	947	predicted protein [Populus trichocarpa]	0.982	0.852	0.423	0.0
224140511	894	predicted protein [Populus trichocarpa]	0.954	0.876	0.426	1e-170
359485824	973	PREDICTED: receptor-like protein 12-like	0.842	0.711	0.483	1e-168
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.833	0.397	0.484	1e-165
224128143	923	predicted protein [Populus trichocarpa]	0.958	0.852	0.419	1e-163
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.855	0.699	0.467	1e-161
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.833	0.351	0.471	1e-158
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.833	0.355	0.470	1e-157
359485822	993	PREDICTED: receptor-like protein 12-like	0.839	0.693	0.472	1e-156

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/889 (46%), Positives = 516/889 (58%), Gaps = 115/889 (12%)

Query: 30  LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLE---EEDRDCCSWDGVKCNEDT 86
           LCH  ERSALLQFK+S  I+  AS   SA+ K A W      EE  DCCSWDGV+C+ +T
Sbjct: 13  LCHDSERSALLQFKQSFLIDGHASGDPSAYPKVAMWKSHGEGEEGSDCCSWDGVECDRET 72

Query: 87  GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS------- 139
           GHVI L+L SSC+YGSINS+S+LF L HL  L L+DN+FNYS+IP  +  LS        
Sbjct: 73  GHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLSRLRSLDLS 132

Query: 140 ---FSGQVPS-----------------------------LGNLTKLKCLELSQNNFSS-- 165
              F+GQ+PS                             + NLT LK L L Q N SS  
Sbjct: 133 SDRFAGQIPSELLALSKLVFLNLSANPMLQLQKPGLRYLVQNLTHLKELHLRQVNISSTI 192

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN------------- 212
           PH      +A  + L  L L    L GEFP  +  L  L +++   N             
Sbjct: 193 PHE-----LANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYNPDLIGYLPEFQET 247

Query: 213 -----------QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
                        +G +P  +  L  LT L + S    G +PS +G L+QL+ LDLS N 
Sbjct: 248 SPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVPSPLGHLSQLSYLDLSNNF 307

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL-LPKLKSLIVL------FLSANNLSL 314
           F G +PSS++ L RL +LDL  NNL G +      L  L+ L V        +  N LSL
Sbjct: 308 FSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVADNSLNGTVELNRLSL 367

Query: 315 ITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
           +     N+ L  KF  LGL SCNL EF DFL +QD+LE+L LS NKI G IP W+ N++ 
Sbjct: 368 LGYTRTNVTLP-KFKLLGLDSCNLTEFPDFLQNQDELEVLFLSDNKIHGPIPKWMWNISQ 426

Query: 375 GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLL 433
            NL+ ++LS NL+TGF++  VVL W+ L  L+L SN LQGPLPIPP STI Y  VS N L
Sbjct: 427 ENLESLDLSGNLLTGFNQHPVVLPWSKLSILELDSNMLQGPLPIPPPSTIEYYSVSRNKL 486

Query: 434 TGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN----------------SKIFKNAT-- 475
            G+++P +CN++SL +LDLS N LSG +PQCL+N                  I +  T  
Sbjct: 487 IGEISPLICNMSSLILLDLSSNNLSGRIPQCLANLSKSLFILDLGSNNLDGPIPQTCTVP 546

Query: 476 -NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
            NL++IDL  N  QG+IPRS ANC MLE L LGNNQI DIFP WLG LP+L+VL+L+ NR
Sbjct: 547 NNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNR 606

Query: 535 FHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN-KSQLKYMQDQPGQ 593
           FHG IG   + F FPKLRI+DLS N+F G LPS+YFQ W+A+K+ +  + L+YMQ +P  
Sbjct: 607 FHGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPSEYFQNWDAMKLTDIANDLRYMQARP-- 664

Query: 594 SLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT 653
              + +P        Y     Y YS+TM N+G++  Y K+ +    I  S N   G+IPT
Sbjct: 665 --KFQIPG-------YGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFSGNNFKGQIPT 715

Query: 654 SISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD 713
           SI  L G + LNL  NNL GHIPSSLG+LT LESLDLS N LSGEIP QL  +T LA F+
Sbjct: 716 SIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFFN 775

Query: 714 VSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKE--DQDSETPFEF 771
           VS N+LTG IPQG QF TF N+SF+GN GLCG PLSR C  SE+S          +  EF
Sbjct: 776 VSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEASPPTSSSSKQGSTSEF 835

Query: 772 GWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRRRKRGRR 820
            WK VL GY SGL++GV IG   T+  + WF KT G R +   RK  R 
Sbjct: 836 DWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/959 (42%), Positives = 534/959 (55%), Gaps = 152/959 (15%)

Query: 1   MGLSFCFLTA-----FSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAH 55
           M  S CFLT      F L  FH+   H +  +  LCH  E  AL+QFKESL I++ AS  
Sbjct: 1   MASSVCFLTMRMLSLFLLSFFHLRACHSSPSMQPLCHDEESHALMQFKESLVIHRSASYD 60

Query: 56  RSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHL 115
            +A+ K ASW+++ E  DCCSWDGV+C+ D+GHVI L+L+SSC+YGSI+S+SSLFHL  L
Sbjct: 61  PAAYPKVASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQL 120

Query: 116 EWLSLADNNFNYSKIPSEIMNL----------SSFSGQVPS------------------- 146
             L LADN+FN SKIPSEI NL          SSFSGQ+P+                   
Sbjct: 121 RRLDLADNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVSLDLGWNSLK 180

Query: 147 ---------LGNLTKLKCLELSQNNFSSPHSASFSW---------------------IAK 176
                    +  L  L+ L +  N + S +     W                     I  
Sbjct: 181 LQKPGLEHLVKALINLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLAGTSFSGKLPESIGN 240

Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP----------------- 219
              L    + + N  G  PS L NLT+L Y++   N  +G IP                 
Sbjct: 241 LKSLKEFDVGDCNFSGVIPSSLGNLTKLNYLDLSFNFFSGKIPSTFVNLLQVSYLSLSFN 300

Query: 220 -------NWLA------------------------NLNRLTILSLKSNQLRGYLPSQIGS 248
                  +WL                         NL +LT L+L  N+L G +PS IG+
Sbjct: 301 NFRCGTLDWLGNLTNLKIVDLQGTNSYGNIPSSLRNLTQLTALALHQNKLTGQIPSWIGN 360

Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308
            TQL +L L  N+  GP+P SI  L+ LE LDL SN  SG + +  LL K ++L+ L LS
Sbjct: 361 HTQLISLYLGVNKLHGPIPESIYRLQNLEQLDLASNFFSGTLDLNLLL-KFRNLVSLQLS 419

Query: 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGW 368
             NLSL+  N   I  Q+K   L L+  NL EF  FL DQ+ LELLDL+ +K+ G+IP W
Sbjct: 420 YTNLSLLNSNNATIP-QSKLELLTLSGYNLGEFPSFLRDQNHLELLDLADDKLDGRIPKW 478

Query: 369 LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428
            +N++T  L+ + L+ NL+TGF++   VL W +L +L L SNKLQG LPIPP +   Y V
Sbjct: 479 FMNMSTITLEALCLTGNLLTGFEQSFDVLPWKNLRSLQLYSNKLQGSLPIPPPAIFEYKV 538

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS-------------------K 469
            NN LTG++   +C+L SL VL+LS+N LSG LP CL N                    +
Sbjct: 539 WNNKLTGEIPKVICDLTSLSVLELSNNNLSGKLPPCLGNKSRTASVLNLRHNSFSGDIPE 598

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
            F +  +L+++D S N L+G+IP+SLANCT LE L+L  N I D+FPSWLG LP+L+V++
Sbjct: 599 TFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGILPDLRVMI 658

Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIK-VANKSQLKYMQ 588
           L+ N  HG IG P+T   FP L+I+DLS+N F GKLP +YF+ W A+K V N   L YMQ
Sbjct: 659 LRSNGLHGVIGNPETNVEFPTLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNDQHLIYMQ 718

Query: 589 DQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI 648
                       ++S       +   Y YS+TM NKG+   Y K+ + LT I LS N   
Sbjct: 719 -----------ANASFQTSQIRMTGKYEYSMTMTNKGVMRLYEKIQDSLTVIDLSRNGFE 767

Query: 649 GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTS 708
           G IP  + +LK L+ LNLS N L G IP SL NL  LE+LDLS N LSGEIP QLA+LT 
Sbjct: 768 GGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEIPVQLAQLTF 827

Query: 709 LAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNC----EISESSQKEDQD 764
           LAVF+VS N L+G+IP+G QF TF+N+SF+ NP LCG+PLS+ C    E S  + KED+ 
Sbjct: 828 LAVFNVSHNFLSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNNGEDSLPAAKEDEG 887

Query: 765 SETPFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRR---RKRGRR 820
           S    EFGWK+V+ GYASGL++GV++G    TR   W  K    R Q +    + R RR
Sbjct: 888 SGYQLEFGWKVVVIGYASGLVIGVILGCAMNTRKYEWLVKNYFARRQNKGQDLKTRLRR 946

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 377/884 (42%), Positives = 506/884 (57%), Gaps = 100/884 (11%)

Query: 21  AHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGV 80
            H +  +  LCH  E  ALLQFKESL IN+ AS   SA+ K ASW  + E  +CCSWDGV
Sbjct: 26  CHSSPSMQPLCHDDESYALLQFKESLVINESASYEPSAYPKVASWKADGERGNCCSWDGV 85

Query: 81  KCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLS-- 138
           +C+ D+GHVI L+L+SSC+YGSI+S+SSLFHL  L  L+LADN+FN SKIPS I NLS  
Sbjct: 86  ECDGDSGHVIGLDLSSSCLYGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSGIRNLSRL 145

Query: 139 --------SFSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN 189
                    FSGQ+P+ +  L++L  L+L  N     +      +   T L  L L+ +N
Sbjct: 146 VDLNLTMDGFSGQIPAEILELSELVSLDLGLNPLKLQNPGLQHLVEALTNLEVLHLSGVN 205

Query: 190 ------------------------LIGEFPSWLMNLTQLTYINFDLN------------- 212
                                   L GEFP  +  L  L   +   N             
Sbjct: 206 ISAKIPQIMTNLSSLSSLSLRNCRLQGEFPMGIFQLPNLRLFSIRYNPYLTGYLPEFRSG 265

Query: 213 -----------QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
                        +G +P  L NL  L    +      G +PS +G+LTQL AL LS N+
Sbjct: 266 SKLETLMLTGTNFSGQLPESLGNLKSLKEFHVAKCYFSGVVPSSLGNLTQLFALFLSDNK 325

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
             G +P SI  L+ LE LDL +N  SG++ +     + ++L  L LS NNLSL+T +   
Sbjct: 326 LHGAIPESIYRLQNLEILDLSNNFFSGSLELN----RFRNLASLLLSYNNLSLLTGHNAT 381

Query: 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVN 381
             L    +   L  CNL E   FL DQ+QLE+L++  NK+ G IP W +NV+T  L+ ++
Sbjct: 382 FPLPKLQLLK-LEGCNLGELPSFLRDQNQLEILEIGDNKLEGHIPKWFMNVSTITLEALS 440

Query: 382 LSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL 441
           L+ NL+TGF++   VL W +L +L L SNK QG LPIPP +   Y VSNN L G++   +
Sbjct: 441 LAGNLLTGFEQSFDVLPWNNLRSLSLNSNKFQGSLPIPPPAIYEYQVSNNKLNGEIPEVI 500

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNS-------------------KIFKNATNLKMIDL 482
           CNL SL VLDLS+N LSG LP CL N                    + F +  +L+++DL
Sbjct: 501 CNLTSLSVLDLSNNNLSGKLPPCLGNKSSTASVLNLRNNSFSGDIPETFTSGCSLRVVDL 560

Query: 483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEP 542
           S N L+G+IP+SLANC  LE L+L  N I D+FPSWLG LP+LKVL+ + N  HG IG+P
Sbjct: 561 SQNKLEGKIPKSLANCAELEILNLEQNNINDVFPSWLGMLPDLKVLIFRSNGLHGVIGKP 620

Query: 543 DTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS 602
           +T   FP+L+I+DLS+N F GKLP +YF+ W A+K  +   L YMQ             +
Sbjct: 621 ETNVDFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVHNEPLIYMQ-----------ADT 669

Query: 603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN 662
           S  I   S+   Y YS+TM NKG+   Y K+ + L+ I LS+N   G IP  + +LK L+
Sbjct: 670 SIDISRASVTNPYPYSMTMTNKGVMTLYEKIQDSLSAIDLSSNGFEGGIPEVLGDLKALH 729

Query: 663 CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ 722
            LNLS N L G IP SL NL  LE+LDLS+N LSGEIP QLA+LT L +F+VS N L+G 
Sbjct: 730 LLNLSNNFLSGRIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLEIFNVSHNFLSGP 789

Query: 723 IPQGKQFNTFENSSFEGNPGLCGKPLSRNC--EISE-SSQKEDQDSETPFEFGWKIVLTG 779
           IP+G QF  F+++SF+ N GLCG+PLS+ C  ++    + +ED  S  P EFGWK+V+ G
Sbjct: 790 IPRGNQFGAFDSTSFDANSGLCGEPLSKKCGNDVDPLPAPEEDGGSGYPLEFGWKVVVIG 849

Query: 780 YASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRR---RKRGRR 820
           YA+GL++GV++G    TR   W  K    R Q +    + R RR
Sbjct: 850 YATGLLIGVILGCVMNTRKYEWVVKNYFARWQNKGQHLKNRLRR 893

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/746 (48%), Positives = 465/746 (62%), Gaps = 54/746 (7%)

Query: 109 LFHLRHLEWLSLADNNFNYSKIPS-------EIMNLS--SFSGQVP-SLGNLTKLKCLEL 158
           +F L  L++L++ DN    S +P        ++++L+  SFSG++P S+G L  L  L++
Sbjct: 243 IFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELPTSIGRLGSLTELDI 302

Query: 159 SQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPI 218
           S  NF+    +S   +   T+L +L L+N +  G+ PS + NLTQL Y++   N      
Sbjct: 303 SSCNFTGSVPSS---LGHLTQLYYLDLSNNHFSGQIPSSMANLTQLIYLSLSWNDFNVGT 359

Query: 219 PNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY 278
            +WL    +LT L L    L G +P  + +++QL  L LS NQ  G +PSS+ EL  L+ 
Sbjct: 360 LSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSSLFELVNLQG 419

Query: 279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
           L L SN L+G V ++ LL KLK+LI L LS N LS ++    N  L  KF  LGL SCNL
Sbjct: 420 LYLLSNYLNGTVELQ-LLSKLKNLIYLQLSDNRLSFLSYTRTNATLP-KFKHLGLGSCNL 477

Query: 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL 398
            EF DFL +Q +LE++ LS NKI G IP W+ N++   L  + LS N +TGFD+   VL 
Sbjct: 478 TEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQRPFVLP 537

Query: 399 WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
           W+ L TL L SN LQGPLP+PP ST+ YLVS N LTG+++P +CN+ SL +LDLS N LS
Sbjct: 538 WSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELLDLSSNNLS 597

Query: 459 GVLPQCLSN-------------------SKIFKNATNLKMIDLSHNLLQGRIPRSLANCT 499
           G +PQCL+N                    +I   + NL +IDL  N  QG+IPRSL NCT
Sbjct: 598 GRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVNCT 657

Query: 500 MLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
           MLE L LGNN+I DIFP WLG LP+L+VL+L+ NRFHG IG   T F FPKLRIIDLS N
Sbjct: 658 MLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDN 717

Query: 560 RFSGKLPSKYFQCWNAIKVAN-KSQLKYMQDQPGQSL-NYILPSSSAYIFDYSLQYIYAY 617
            F G LPS+YFQ W+A+K+ +  S L+YMQ  P   L N ++ +             Y Y
Sbjct: 718 EFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNNVMITG------------YMY 765

Query: 618 SITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS 677
           S+TM NKG++  Y ++ +    I  S N   G+IPTSI  LKG++ LNL GN+L GHIPS
Sbjct: 766 SMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPS 825

Query: 678 SLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSF 737
           SLGNLT LESLDLS N LSGEIP QL  LT L  F+VS N+LTG IPQGKQF TFEN+SF
Sbjct: 826 SLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASF 885

Query: 738 EGNPGLCGKPLSRNCEISE----SSQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQT 793
           +GN GLCG PLSR C  SE    +S    Q S T F+  WKIVL GY SGL++GV IG  
Sbjct: 886 DGNLGLCGSPLSRECGSSEALPPTSSSSKQGSTTKFD--WKIVLMGYGSGLLIGVSIGYC 943

Query: 794 FTTRINAWFAKTLGMRVQGRRRKRGR 819
            T+  + WF KT+G R +   RK GR
Sbjct: 944 LTSWKHEWFVKTIGKRQRKWTRKEGR 969

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/737 (48%), Positives = 460/737 (62%), Gaps = 53/737 (7%)

Query: 115  LEWLSLADNNFNYSKIPSEIMNLSS----------FSGQVPS-LGNLTKLKCLELSQNNF 163
            L+ L+LA  +F+   +P+ + NL S          F+G V S +G L++L  L+LS+N+F
Sbjct: 999  LKLLTLAGTSFS-GGLPASVDNLYSLNELDISSCHFTGLVSSSIGQLSQLTHLDLSRNSF 1057

Query: 164  SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
                 +S   +A  ++L++L +++ N  GE   W+  LT+LT++  D   L G IP +LA
Sbjct: 1058 RGQIPSS---LANLSQLTFLEVSSNNFSGEAMDWVGKLTKLTHLGLDSINLKGEIPPFLA 1114

Query: 224  NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            NL +L  LSL+ NQL G +PS + +LT+LT+L L  N+  GP+PSSI EL  LE L L S
Sbjct: 1115 NLTQLDYLSLEFNQLTGKIPSWVMNLTRLTSLALGYNKLHGPIPSSIFELVNLEILYLRS 1174

Query: 284  NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
             +L+G +   ++L KLK L  L L  N L L T  + N     KF  LGLASCNL EF  
Sbjct: 1175 XDLTG-ILELDMLLKLKKLTRLGLXDNKLLLRTDTSSN-GXGPKFKVLGLASCNLGEFPH 1232

Query: 344  FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
            FL +QD+LELL LS NKI GKIP W+ N+    L  ++L++N +TGF++  V L W  L+
Sbjct: 1233 FLRNQDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPWXSLI 1292

Query: 404  TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
             L+L SN LQG LP+PP S   Y V NN  TGK+ P  CNL+ L +LDLS+N LSG++P+
Sbjct: 1293 YLELSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLSLLHMLDLSNNTLSGMIPE 1352

Query: 464  CLSN-------------------SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
            CLSN                    + F+  + LKMIDLS NLL+G +PRSL NCT+LE L
Sbjct: 1353 CLSNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTVLESL 1412

Query: 505  DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
            +LGNNQI+D FP WLG LPEL+VL+L+ NRFHG IG+P T F FPKLRIIDLS+N FSG 
Sbjct: 1413 NLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNSFSGN 1472

Query: 565  LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNK 624
            LPS YF  W A+K  +     YMQ   G S              Y L   Y YS+TM NK
Sbjct: 1473 LPSVYFLDWIAMKSIDADNFTYMQASSGFSTQ-----------TYKLYDNYTYSMTMTNK 1521

Query: 625  GIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV 684
            G+E  Y K+      I  S+NK  G+IPTSI  LKGL+ LN S N+L G IP+SL NLT 
Sbjct: 1522 GMERVYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTE 1581

Query: 685  LESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLC 744
            LE+LDLS NNL GEIP+QL E+T L  F+VS NNLTG IPQ KQF+TF++ S+EGNPGLC
Sbjct: 1582 LEALDLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLC 1641

Query: 745  GKPLSRNC------EISESSQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQTFTTRI 798
            G PL R C          S+ ++ QD E    F  K+VL GY S L+ GV+IG  FTTR 
Sbjct: 1642 GNPLIRKCGNPKQASPQPSTSEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRK 1701

Query: 799  NAWFAKTLGMRVQGRRR 815
            + WF KT G R Q + R
Sbjct: 1702 HEWFVKTFGRRQQQQER 1718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 388/926 (41%), Positives = 511/926 (55%), Gaps = 139/926 (15%)

Query: 3   LSF-CFLTAFSLLLFHITNAHLASPLHQLCHAGERSALLQFKESLTINKEASAHRSAHAK 61
           LSF CFLT    LLF + N      +  LCH  ERSALL F +S +I+  AS    A+ K
Sbjct: 9   LSFVCFLT----LLFLLINT-----VQPLCHGVERSALLHFMQSFSISNNASISSYAYPK 59

Query: 62  FASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLA 121
            ASW +  E  DCC WDGV+C+EDTG+VI L+L  S ++GSINS+SSLF L HL  L+L 
Sbjct: 60  TASWKIRGESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINSTSSLFQLVHLRRLNLG 119

Query: 122 DNNFNYSKIPSEIMNLSS----------FSGQVP-SLGNLTKLKCLELSQN--------- 161
            N+FNYS++PS +  LSS          F G+VP  +  L+ L  L+L +N         
Sbjct: 120 GNDFNYSQVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARKLL 179

Query: 162 ------------NFSSPHSASFSWI----------AKQTELSWLALANINLIGEFPSWLM 199
                       NF+       S +          A  + L++L L + NL G  PS   
Sbjct: 180 ELGSFDLRRLAQNFTGLEQLDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSSFG 239

Query: 200 NLTQLTYINFDLNQLTGPIP------------------------NWLANLN--------- 226
           +LT+L Y+N   N  +G +P                        +WL NLN         
Sbjct: 240 DLTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNKIRALHLSD 299

Query: 227 ---------------RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271
                          R+  L L +N+L G +P  I +LTQLT + L  N+ QGP+P S+S
Sbjct: 300 INLVGEIPLSLRNMTRIIQLHLSNNRLTGKIPLWISNLTQLTLVHLRHNELQGPIPESMS 359

Query: 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL 331
           +L  LE L L  N+LSG +    +   LK L +L +  NNL+++T  + N  L  KF +L
Sbjct: 360 KLVNLEELKLEYNHLSGTIEF-SMFASLKHLTMLQIRRNNLTVLTNISDNTTLP-KFKYL 417

Query: 332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391
            L  CNL EF DFL  QD+L  L L  N+I G+IP WL ++    L  + L  NL +GF+
Sbjct: 418 ALGDCNLSEFPDFLRSQDELIYLHLGRNRIQGQIPKWLGDIGHKTLSILILRNNLFSGFE 477

Query: 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLD 451
           +   + L T L  L+L SNKL+G LPIPP S I Y +SNN LTG++ P LCNL SL  LD
Sbjct: 478 QSWELSLLTKLQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCNLRSLGFLD 537

Query: 452 LSHNFLSGVLPQCLSN-------------------SKIFKNATNLKMIDLSHNLLQGRIP 492
           LS+N LSG+ P CL +                    + F++ +NL+MIDLSHN L+G++P
Sbjct: 538 LSYNKLSGMFPNCLGDFSDSLLVLNLSNNFFHGRIPQAFRDESNLRMIDLSHNQLEGQLP 597

Query: 493 RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLR 552
           RSL NC M+E LDL  N+I+D FP WL  LPEL+VL+L+ N+F G I  P     F KL+
Sbjct: 598 RSLTNCRMMEILDLSYNRISDKFPFWLANLPELQVLILRSNQFFGSIKSPGAMLEFRKLQ 657

Query: 553 IIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQ 612
           IIDLS+N F+G LPS++FQ   +++ ++  +  YMQ        + LP        YS  
Sbjct: 658 IIDLSYNNFTGILPSEFFQTLRSMRFSDLKEFTYMQTIH----TFQLPV-------YSRD 706

Query: 613 YIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLL 672
           + Y Y I + NKG+ M Y ++ N +  I LS+N   G IP SI   + +N LNLS N+L 
Sbjct: 707 FTYRYEINLANKGVYMKYWQIPNVIAAIDLSSNAFQGDIPQSIGTREKVNALNLSNNHLS 766

Query: 673 GHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTF 732
           G IPS LGNL  LESLDLS N LSGEIP+ L +LT LA F+VS N L G IPQGKQFNTF
Sbjct: 767 GDIPSVLGNLANLESLDLSQNMLSGEIPQYLTQLTFLAYFNVSHNQLEGPIPQGKQFNTF 826

Query: 733 ENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSET------PFEFGWKIVLTGYASGLIV 786
           +NSS+EGN GL  K L +  E SE  Q  +           P +  W  V+ GY SGL+V
Sbjct: 827 DNSSYEGNSGLYMKHLPKKSECSEPPQHPNLPKHQGFNNILPKDIEWIAVVIGYGSGLVV 886

Query: 787 GVVIGQTFTTRINAWFAKTLGMRVQG 812
           GVV+G   + RI  WF KT G R QG
Sbjct: 887 GVVVGLRVSARIPEWFVKTFG-RTQG 911

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/770 (46%), Positives = 467/770 (60%), Gaps = 68/770 (8%)

Query: 84   EDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFN------YSKIPS-EIMN 136
            ++T  +  L L  +  YG +   +S+  L  L  L ++  NF        + IP   +++
Sbjct: 268  QETSPLKMLYLAGTSFYGEL--PASIGSLDSLTELDISSCNFTRLFPSPLAHIPQLSLLD 325

Query: 137  LS--SFSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGE 193
            LS  SFSGQ+PS + NLT+L  L+LS N+FS     + +W+ KQT               
Sbjct: 326  LSNNSFSGQIPSFMANLTQLTYLDLSSNDFSV---GTLAWVGKQT--------------- 367

Query: 194  FPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLT 253
                     +LTY+  D   LTG IP+ L N++ LTILSL  NQL G +PS + +LTQLT
Sbjct: 368  ---------KLTYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLT 418

Query: 254  ALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS 313
             L L  N+ +GP+PSS+ EL  L+ L LHSN L+G V +  +L KLK+L  L LS N LS
Sbjct: 419  ELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTGTVELH-MLSKLKNLTGLLLSGNRLS 477

Query: 314  LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVT 373
            L++    N  L   F  LGL SCNL EF DFL +QD+L +L LS NKI G IP W+ N++
Sbjct: 478  LLSYTRTNATLPT-FKLLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNIS 536

Query: 374  TGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLL 433
               L+ + LS N +TGFD+  VVL W+ L +L L  N LQGPLPIPP STI Y V  N L
Sbjct: 537  KETLEALRLSGNFLTGFDQRPVVLPWSRLYSLQLDFNMLQGPLPIPPPSTILYSVYGNKL 596

Query: 434  TGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN----------------SKIFKNAT-- 475
            TG+++P +CN++SL++LDL+ N LSG +PQCL+N                  I +  T  
Sbjct: 597  TGEISPLICNMSSLKLLDLARNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVP 656

Query: 476  -NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
             NL++IDL  N  +G+IPRS ANC MLE L LGNNQI DIFP WLG LP+L+VL+L+ NR
Sbjct: 657  NNLRVIDLGENQFRGQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNR 716

Query: 535  FHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQS 594
            FHG IG   T F FPKL IIDLS+N F+G LPS+YFQ  +A+++ +  QL Y +    Q 
Sbjct: 717  FHGAIGSWHTNFRFPKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQ- 775

Query: 595  LNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654
            L  +L   + Y+    +       I M+ KG+   Y  +   L  I LS+NK  G+IP S
Sbjct: 776  LPIVL--RTKYMMGDMVGPRNDTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEIPES 833

Query: 655  ISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV 714
            I  L GL  LNLS N L G I +SL NLT LE+LDLS N L GEIP+QL +LT LAVF V
Sbjct: 834  IGGLVGLYSLNLSNNALTGPILTSLANLTQLEALDLSQNKLLGEIPQQLTQLTFLAVFSV 893

Query: 715  SDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDSE----TPFE 770
            S N+LTG IPQGKQFNTF NSSF+GNPGLCG PLSR C  S+        S     +P +
Sbjct: 894  SHNHLTGPIPQGKQFNTFSNSSFDGNPGLCGSPLSRVCGSSKGWSLTPPPSTFGNGSPSD 953

Query: 771  FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTLGMRVQGRRRKRGRR 820
            F WKIVL GY SG+++GV IG   T   + WF KT G R Q + RK+ ++
Sbjct: 954  FDWKIVLMGYGSGIVMGVSIGYCLTVWKHEWFVKTFG-RQQRKLRKKEQK 1002

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 348/738 (47%), Positives = 456/738 (61%), Gaps = 54/738 (7%)

Query: 110  FH-LRHLEWLSLADNNFNYSKIPSEIMNLSS----------FSGQVPS-LGNLTKLKCLE 157
            FH   HL++L L   +F+  ++P+ I  LSS          FSG VP+ LGNLT+L  L+
Sbjct: 1221 FHNASHLKYLDLYWTSFS-GQLPASIGFLSSLKELDICSCNFSGMVPTALGNLTQLTHLD 1279

Query: 158  LSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLNQLTG 216
            LS N+F    ++S + +     L++L ++  +      SW++  LT+ T +N +   L G
Sbjct: 1280 LSSNSFKGQLTSSLTNL---IHLNFLDISRNDFSVGTLSWIIVKLTKFTALNLEKTNLIG 1336

Query: 217  PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL 276
             I   L+NL  LT L+L+ NQL G +P  +G+LT L  L L  N  +GP+PSSI EL  L
Sbjct: 1337 EILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLTLLKTLGLGYNNLEGPIPSSIFELMNL 1396

Query: 277  EYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASC 336
            + L L +N LSG V +  +L KLK+L  L LS N+LSL+T N++N  L  +   LGLASC
Sbjct: 1397 DTLILRANKLSGTVELN-MLVKLKNLHKLGLSHNDLSLLTNNSLNGSLP-RLRLLGLASC 1454

Query: 337  NLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVV 396
            NL EF  FL +QD+L+ L LS NKI G+IP W+ N+    L  ++LS NL+T F++  VV
Sbjct: 1455 NLSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTCFEQAPVV 1514

Query: 397  LLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF 456
            L W  L  L+L  N+LQG LP+PP S   Y V NN L GK    +C+L+ L +LDLS+N 
Sbjct: 1515 LPWITLRVLELSYNQLQGSLPVPPSSISDYFVHNNRLNGKFPSLICSLHHLHILDLSNNN 1574

Query: 457  LSGVLPQCL-------------------SNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN 497
            LSG++PQCL                   S  + F +   LKMID S+N L+G+IPRSL N
Sbjct: 1575 LSGMIPQCLSDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRSLGN 1634

Query: 498  CTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS 557
            C  LE L+LGNNQI D FP WLG+ PEL++L+L+ NRFHG I  P   F FP L IIDLS
Sbjct: 1635 CKELEILNLGNNQINDTFPFWLGSFPELQLLILRHNRFHGAIENPRANFEFPTLCIIDLS 1694

Query: 558  HNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAY 617
            +N F+G LP+ YF  W A+   ++    YMQ   G    ++L      I  Y L   Y Y
Sbjct: 1695 YNNFAGNLPAGYFLTWVAMSRVDEENFSYMQSMTG----FVL------IRTYRLYENYNY 1744

Query: 618  SITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS 677
            S+TM NKG+E  Y K+      I LS+NK IG+IP SI +L+GL+ LN+S N+L GHIPS
Sbjct: 1745 SMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPS 1804

Query: 678  SLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSF 737
             LGNL  LE+LDLS NNLSGEIP+QL  +T L  F+VS N+L G IPQGKQFNTF+N S+
Sbjct: 1805 FLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSY 1864

Query: 738  EGNPGLCGKPLSRNCEISES------SQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIG 791
            EGNPGLCG PLS+ CE S+S      + K   D E+  +    IVL GY SGL+VG+ IG
Sbjct: 1865 EGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVVGMAIG 1924

Query: 792  QTFTTRINAWFAKTLGMR 809
             T TTR + WF KT G R
Sbjct: 1925 YTLTTRKHEWFVKTFGKR 1942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 347/737 (47%), Positives = 455/737 (61%), Gaps = 53/737 (7%)

Query: 110  FH-LRHLEWLSLADNNFNYSKIPSEIMNLSS----------FSGQVP-SLGNLTKLKCLE 157
            FH   HL++L L   +F+  ++P+ I  LSS          FSG VP +LGNLT+L  L+
Sbjct: 1200 FHNASHLKYLDLYWTSFS-GQLPASIGFLSSLKELDICSCNFSGXVPTALGNLTQLAHLD 1258

Query: 158  LSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP 217
            LS N+F    ++S   +     L++L  +  +      SW++ LT+LT ++ +   L G 
Sbjct: 1259 LSXNSFKGQLTSS---LXNLIHLNFLDXSRNDFSVGTLSWIVKLTKLTALDLEKTXLNGE 1315

Query: 218  IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLE 277
            I   L+NL  LT L+L+ NQL G +P  +G+LT L  L L  N  +GP+PSSI EL  L+
Sbjct: 1316 ILPSLSNLTGLTYLNLEYNQLTGRIPPCLGNLTLLKXLGLGYNNLEGPIPSSIFELMNLD 1375

Query: 278  YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN 337
             L L +N LSG V +  +L KLK+L  L LS N+LSL+T N++N  L  +   LGLASCN
Sbjct: 1376 TLFLRANKLSGTVELN-MLVKLKNLHXLGLSHNDLSLLTNNSLNGSLP-RLRLLGLASCN 1433

Query: 338  LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVL 397
            L EF  FL +QD+L+ L LS NKI G+IP W+ N+    L  ++LS NL+T F++  VVL
Sbjct: 1434 LSEFPHFLRNQDELKFLTLSDNKIHGQIPKWMWNMGKETLWVMDLSNNLLTXFEQAPVVL 1493

Query: 398  LWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFL 457
             W  L  L+L  N+LQG LP+PP S   Y V NN L GK    +C+L+ L +LDLS+N L
Sbjct: 1494 PWITLRVLELSYNQLQGSLPVPPXSISDYFVHNNRLNGKXPSLICSLHHLHILDLSNNNL 1553

Query: 458  SGVLPQCLSNS-------------------KIFKNATNLKMIDLSHNLLQGRIPRSLANC 498
            SG++PQCL +S                   + F +   LKMID S+N L+G+IPRSL NC
Sbjct: 1554 SGMIPQCLXDSSDSLSVLNLRGNNFHGSIPQTFTSQCRLKMIDFSYNQLEGQIPRSLXNC 1613

Query: 499  TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
               E L+LGNNQI D FP WLG+LPEL++L+L+ NRFHG I  P   F FP L IIDLS+
Sbjct: 1614 KEXEILNLGNNQINDTFPFWLGSLPELQLLILRHNRFHGAIESPRANFEFPTLCIIDLSY 1673

Query: 559  NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS 618
            N F+G LP+ YF  W A+   ++    YMQ   G    ++L      I  Y L   Y YS
Sbjct: 1674 NXFAGNLPAGYFLTWVAMSRVDEEHFSYMQSMTG----FVL------IRTYRLYENYNYS 1723

Query: 619  ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSS 678
            +TM NKG+E  Y K+      I LS+NK IG+IP SI +L+GL+ LN+S N+L GHIPS 
Sbjct: 1724 MTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSF 1783

Query: 679  LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFE 738
            LGNL  LE+LDLS NNLSGEIP+QL  +T L  F+VS N+L G IPQGKQFNTF+N S+E
Sbjct: 1784 LGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYE 1843

Query: 739  GNPGLCGKPLSRNCEISESSQ------KEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQ 792
            GNPGLCG PLS+ C  S+S+       K   D E+  +    IVL GY SGL+VG+ IG 
Sbjct: 1844 GNPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGY 1903

Query: 793  TFTTRINAWFAKTLGMR 809
            T TTR + WF KT G R
Sbjct: 1904 TLTTRKHEWFVKTFGKR 1920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 350/740 (47%), Positives = 462/740 (62%), Gaps = 51/740 (6%)

Query: 115 LEWLSLADNNFNYSKIPSEIMNLSS----------FSGQVPS-LGNLTKLKCLELSQNNF 163
           L+ L LA  +++  ++P+ +  LSS          F+G VPS LG+LT+L  L+LS N F
Sbjct: 270 LKVLYLAGTSYS-GELPASMGKLSSLSELDISSCNFTGLVPSSLGHLTQLSYLDLSYNFF 328

Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
           S P     S++A  T L++L+L + N      +WL   T+LT +  D   L G IP+ L 
Sbjct: 329 SGPIP---SFLANLTTLTYLSLTSNNFSAGTLAWLGEQTKLTILYLDQINLNGEIPSSLV 385

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
           N++ LTIL+L  NQL G +PS + +LTQLT L L  N+ +GP+PSS+ EL  L+YL LHS
Sbjct: 386 NMSELTILNLSKNQLIGQIPSWLMNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYLHS 445

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
           N L+G V +  +L  LK+L  L LS N +SL++  + N  L  KF  LGLASCNL EF D
Sbjct: 446 NYLTGTVELH-MLSNLKNLTDLQLSYNRISLLSYTSTNATLP-KFKLLGLASCNLTEFPD 503

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
           FL +Q +LE+L LS NKI G IP W+ N++   L+ + LS N ++GF +   VL W+ + 
Sbjct: 504 FLQNQQELEVLILSTNKIHGPIPKWMWNISKETLEALFLSNNFLSGFSQVPDVLPWSRMS 563

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
            L+L SN LQG LP+PP ST+ Y VS N L G++   +CNL SL +LDLS N LSG +PQ
Sbjct: 564 ILELSSNMLQGSLPVPPSSTVEYSVSRNRLAGEIPSLICNLTSLSLLDLSGNNLSGSIPQ 623

Query: 464 CLSNS-------------------KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
           C +                     +   N +NL+MIDLS N LQG+IP+SLA+C MLE L
Sbjct: 624 CFTKLSSSLSILNLRRNNLNGPIPQTCTNTSNLRMIDLSENQLQGQIPKSLASCMMLEEL 683

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
            LGNN I DIFP WLG+LP L+VL+L+FNRFHG IG P T F F KLRIIDLS+N F+G 
Sbjct: 684 VLGNNLINDIFPFWLGSLPRLQVLILRFNRFHGAIGSPKTNFEFSKLRIIDLSYNGFTGN 743

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNK 624
           LPS+Y + W+A+++ +   L Y+Q        + +P        YS +  Y +S TM NK
Sbjct: 744 LPSEYLKNWDAMRIVDAENLTYIQVDE----EFEVP-------QYSWEEPYPFSTTMTNK 792

Query: 625 GIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV 684
           G+   Y  + + L  I LS+N+  G+IP SI    GL  LNLS N L+G IP+SL NLT+
Sbjct: 793 GMTREYELIPDILIAIDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTL 852

Query: 685 LESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLC 744
           LE+LDLS N LS EIP+QL +LT LA F+VS N+LTG IPQGKQF TF  +SF+GNPGLC
Sbjct: 853 LEALDLSQNKLSREIPQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLC 912

Query: 745 GKPLSRNCEISESSQKEDQDSE--TPFEFGWKIVLTGYASGLIVGVVIGQTFTTRINAWF 802
           G PLSR C  SE S      S+  +  EF WK VL G  SGL++GV IG   T+  + WF
Sbjct: 913 GSPLSRACGSSEQSPPTPSSSKQGSTSEFDWKFVLMGCGSGLVIGVSIGYCLTSWKHEWF 972

Query: 803 AKTLGMRVQG--RRRKRGRR 820
            KT G +     R+ +RG R
Sbjct: 973 VKTFGKQHTKWTRKERRGHR 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	821
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.807	0.650	0.341	1.1e-87
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.844	0.935	0.309	1.2e-83
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.834	0.792	0.325	1e-82
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.861	0.892	0.314	1.4e-80
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.820	0.757	0.323	3.3e-79
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.786	0.807	0.332	5.4e-79
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.802	0.720	0.327	1e-77
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.779	0.726	0.331	5.5e-77
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.472	0.443	0.304	1.7e-75
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.816	0.757	0.320	2.1e-75

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 245/718 (34%), Positives = 353/718 (49%)

Query:   119 SLADNNFNYSKIPSEIMNLSSFSGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQ 177
             ++ D+  +   + S  +++S FSG++P SLGNL+ L  L LS NN      +S   I   
Sbjct:   314 AIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSS---IGNL 370

Query:   178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ 237
              +L+   +    L G  P+ L NLT+L  I+   NQ TG +P  ++ L++L       N 
Sbjct:   371 NQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNP 430

Query:   238 LRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYIE-EL 295
               G + S +  +  LT + LS NQ    V   +I  L  LE   ++  N +    ++  +
Sbjct:   431 FIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNV 490

Query:   296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKXXXXXXXXXXXXXXXX 355
                LK L  L++S   + + T N +     +   +L L SCN+                 
Sbjct:   491 FSSLKQLGTLYIS--RIPISTTN-ITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILD 547

Query:   356 XSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGP 415
              S NKI G++P WL  + T  L  V+LS N ++GF                  SN  QGP
Sbjct:   548 LSNNKIKGQVPDWLWRMPT--LNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGP 605

Query:   416 LPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL---------- 465
             L +P +S  ++  SNN  TGK+   +C L+SL +LDLS+N L+G LP CL          
Sbjct:   606 LFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDL 665

Query:   466 ---SNS------KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516
                +NS      +IF NAT L+ +D+SHN ++G++P SL  C+ LE L++G+N+I D+FP
Sbjct:   666 DLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFP 725

Query:   517 SWLGTLPELKVLMLQFNRFHGEIGEPD-TGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNA 575
               L +L +L+VL+L  N+FHG +   D   F FP+L+IID+SHN F G LPS YF  W A
Sbjct:   726 FELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTA 785

Query:   576 I--KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV 633
             +  K  N  + +Y+Q+          PS    ++  SL Y Y  S+ +++KG+ M   +V
Sbjct:   786 MSSKKDNNIEPEYIQN----------PS----VYGSSLGY-YT-SLVLMSKGVSMEMERV 829

Query:   634 SNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXX 693
                 T I LS N+L GKIP SI                  HIPSSL NL  LE       
Sbjct:   830 LTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQN 889

Query:   694 XXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCX 753
                GEIP +L  L+SLA  +VS N L G IPQG QF   + SS+EGNPGL G  L   C 
Sbjct:   890 NISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCG 949

Query:   754 XXXXXXXXXXXXXTPFE------FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKT 805
                             E      F W     G+A G++ G+ +G    +  + WF KT
Sbjct:   950 HIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYKHQWFMKT 1007

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 237/765 (30%), Positives = 354/765 (46%)

Query:    73 DCCSWDGVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYSKIPS 132
             DCCSWDGV C+  TG V++L+L              LF L+HL+ L L  N+ +   +P 
Sbjct:    10 DCCSWDGVSCDPKTGVVVELDLQYSHLNGPLRSNSSLFRLQHLQKLVLGSNHLS-GILPD 68

Query:   133 EIMNLSSFS----------GQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELS 181
              I NL              G++PS LGNL+ L  L+LS N+F+S    S           
Sbjct:    69 SIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDS----------- 117

Query:   182 WLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
                + N+N + +    L+ L+ +T+I+   NQL G +P+ +++L++L    +  N   G 
Sbjct:   118 ---MGNLNRLTDM---LLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDISGNSFSGT 171

Query:   242 LPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYIEELLPKLK 300
             +PS +  +  L  L L  N F GP    +IS    L+ L++  NN + ++    +   L 
Sbjct:   172 IPSSLFMIPSLILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLSIFSPLL 231

Query:   301 SLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKXXXXXXXXXXXXXXXXXSANK 360
             SL  L +S  NL +   +TV+  L +   +LGL SCN+                  SAN+
Sbjct:   232 SLGYLDVSGINLKI--SSTVS--LPSPIEYLGLLSCNISEFPKFLRNQTSLEYLDISANQ 287

Query:   361 IPGKIPGWLLNVTTGN-LQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIP 419
             I G++P WL ++     +   + S+N   G                     +   PL +P
Sbjct:   288 IEGQVPEWLWSLPELRYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPL-LP 346

Query:   420 PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN------------ 467
               S  +   SNN  +G++   +C L++LR+L LS+N  SG +P+C  N            
Sbjct:   347 VVSMNYLFSSNNRFSGEIPKTICELDNLRILVLSNNNFSGSIPRCFENLHLYVLHLRNNN 406

Query:   468 -SKIFKNAT---NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
              S IF       +L+  D+ HNL  G +P+SL NC+ +EFL++ +N+I D FPSWL  LP
Sbjct:   407 LSGIFPEEAISHHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLP 466

Query:   524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ 583
              L++L+L+ N F+G I  P     F +LRI D+S NRF+G LPS YF  W        S 
Sbjct:   467 NLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGW--------SV 518

Query:   584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY-GKVSNFLTGIIL 642
             +  + D  G+ + Y +        D+     Y  S+ ++NKG++M   G        I +
Sbjct:   519 MSSVVDIDGRIIQYTVTGIDR---DF-----YHKSVALINKGLKMELVGSGFTIYKTIDV 570

Query:   643 SNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQ 702
             S N+L G IP SI                  HIP SL NL+ L+          G IP +
Sbjct:   571 SGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGE 630

Query:   703 LAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCXXXXXXXXXX 762
             L +LT L   + S N L G IP+  Q  T ++SSF  NPGLCG PL + C          
Sbjct:   631 LGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQE 690

Query:   763 XXXXTPFE---FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAK 804
                    E   F W     GY  G++ G+ IG    +    WF +
Sbjct:   691 QDEDKEEEDQVFSWIAAAIGYVPGVVCGLTIGHILVSHKRDWFMR 735

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 241/741 (32%), Positives = 343/741 (46%)

Query:    87 GHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPS 146
             G +  L+L+             LF L  L +L+LA NN + S +PS+             
Sbjct:   157 GKLAVLDLSDNHFSGTLNPNNSLFELHSLRYLNLAFNNIS-SSLPSKF------------ 203

Query:   147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTY 206
              GNL KL+ L LS N FS      F  I+  T ++ L L N  L G FP  + NLT+L++
Sbjct:   204 -GNLNKLEVLSLSFNGFSGQ---CFPTISNLTRITQLYLHNNELTGSFPL-VQNLTKLSF 258

Query:   207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL--PSQIGSLTQLTALDLSCNQFQG 264
             +    N  +G IP++L     L+ L L+ N L G +  P+   S ++L  + L  N  +G
Sbjct:   259 LGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSIEVPNSSTS-SKLEIMYLGFNHLEG 317

Query:   265 PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN-IR 323
              +   IS+L  L+ LDL   N S  + +  L P LKSL  L  S N+LS  + ++ + I 
Sbjct:   318 KILEPISKLINLKRLDLSFLNTSYPIDLNLLSP-LKSLSYLDFSGNSLSPASLSSSSYIP 376

Query:   324 LQNKFVFLGLASCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLS 383
             L  + + L L  C ++                 ++N+I GKIP WL   T   L FV++S
Sbjct:   377 LSMESIVLSL--CGIREFPNILKHLQNLIHIDITSNQIKGKIPEWLW--TLPQLSFVDIS 432

Query:   384 YNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCN 443
              N   GF   +              +N  +G LP  P S I +   +N  TG++   +CN
Sbjct:   433 NNSFNGFQGSAEVFVNLSVRILMLDANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICN 492

Query:   444 LNSLRVLDLSHNFLSGVLPQCLSNSKI---------------FKNATNLKMIDLSHNLLQ 488
               SL ++DLS+N  +G +PQCLSN                  F   ++LK +D+ +N L 
Sbjct:   493 RTSLTMVDLSYNNFTGPIPQCLSNFMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLT 552

Query:   489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV- 547
             G++PRSL NC+ L FL + NN++ D FP WL  LP L+VL L+ N+F+G I  P  G + 
Sbjct:   553 GKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLG 612

Query:   548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIF 607
             FP+LRI +++ N F+G LP  +F  W A      S L   +D  G  + Y    ++    
Sbjct:   613 FPELRIFEIADNMFTGSLPPSFFVNWKA------SALTKNEDG-GLYMVYEYDKAA---- 661

Query:   608 DYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXX 667
             +  ++Y Y  +I +  KG+ M   +V      I  S N+L G+IP SI            
Sbjct:   662 NSPVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLS 721

Query:   668 XXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK 727
                   HIP S  NL  LE          G IP  L  L+ L    V+ N L G+IPQG 
Sbjct:   722 NNAFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGT 781

Query:   728 QFNTFENSSFEGNPGLCGKPLSRNCXXXXXXXXX-XXXXXTPFE-FGWKIVLTGYASGLI 785
             Q      SSFEGN GLCG PL   C                  E   WK V  GYA GL+
Sbjct:   782 QITGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQPKQEDEEKGEVINWKAVAIGYAPGLL 841

Query:   786 VGVVIGQTFTTRINAWFAKTL 806
              G+ I     +    W  K +
Sbjct:   842 FGLAIAHLIASYKPEWLVKII 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 244/776 (31%), Positives = 348/776 (44%)

Query:    42 FKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTXXXXXX 101
             F   LT   +        A  +SW    +D D  S+ GV  + +TG V +L+L       
Sbjct:    49 FNCDLTWKLDYFGRMDTRANISSWT---KDSD--SFSGVSFDSETGVVKELSL-GRQCLT 102

Query:   102 XXXXXXXLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
                    LF  +HL +L L++N+F+ S IPS               G LT L+ L+LS+N
Sbjct:   103 SLKANSSLFRFQHLRYLDLSENHFDSSPIPS-------------GFGRLTYLESLDLSKN 149

Query:   162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW 221
              F     +S S +++ T L    L+   L G  P+ L +LT L  I+   N+ +G IP++
Sbjct:   150 GFIGEVPSSISNLSRLTNLD---LSYNKLTGGIPN-LHSLTLLENIDLSYNKFSGAIPSY 205

Query:   222 LANLNRLTILSLKSNQLRGYLPS-QIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
             L  +  L  L+L+ N L   L +    + ++L  LD++ N     +   IS+L  L  +D
Sbjct:   206 LFTMPFLVSLNLRQNHLSDPLENINYSATSKLLILDMAYNLMSHRILEPISKLANLIQID 265

Query:   281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKX 340
             L           + LL   KSL+ L LS N++S++   + N+        L L+SCN+  
Sbjct:   266 LSFQKTPYTFNFDFLL--FKSLVRLDLSGNSVSVVGTGSENL------THLDLSSCNITE 317

Query:   341 XXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXXXXXX 400
                             S N+I GK+P  L   T  ++  VNLS N     +         
Sbjct:   318 FPMFIKDLQRLWWLDISNNRIKGKVPELLW--TLPSMLHVNLSRNSFDSLEGTPKIILNS 375

Query:   401 XXXXXXXRSNKLQGPLPI-PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
                     SN  +G  PI PP   I    SNN  TG +    C    L +LDLS+N  SG
Sbjct:   376 SISELDLSSNAFKGSFPIIPPYVNI-MAASNNYFTGGIPLIFCKRYRLSLLDLSNNNFSG 434

Query:   460 VLPQCLSNSKI----FKNATN------------LKMIDLSHNLLQGRIPRSLANCTMLEF 503
              +P+CL+N  +     K + N            L ++D+ HN + G++PRSL NCT L+F
Sbjct:   435 TIPRCLTNVSLGLEALKLSNNSLTGRLPDIEDRLVLLDVGHNQISGKLPRSLVNCTTLKF 494

Query:   504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563
             L++  N I D FP WL  L  L++++L+ NRFHG I  P+    F  LRIID+S N F+G
Sbjct:   495 LNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNG 554

Query:   564 KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN 623
              LP  YF  W+A  V      ++ +    +   Y  P     ++ Y        SI +  
Sbjct:   555 SLPQNYFANWSAPLVNTPQGYRWPEYTGDEHSKYETP-----LWSYP-------SIHLRI 602

Query:   624 KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLT 683
             KG  +  GK+ +  T I  S N   G+IP SI +                 IPSSL  L 
Sbjct:   603 KGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLK 662

Query:   684 VLEXXXXXXXXXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
              LE          G IP++L ELT L   ++S N LTGQIPQ  Q      SSFEGN  L
Sbjct:   663 QLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINL 722

Query:   744 CGKPLSRNCXXXXXXXXX--XXXXXTPFE---FGWKIVLTGYASGLIVGVVIGQTF 794
             CG PL  +C                 P +     WK    GY  G++ G+ IGQ F
Sbjct:   723 CGLPLQESCLRGNGVPSTPHTQEQELPKQEHALNWKAAAIGYGPGVLFGLAIGQAF 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 238/735 (32%), Positives = 344/735 (46%)

Query:   112 LRHLEWLSLADNNFNYSKIPS----EI-----MNLS--SFSGQVPS-LGNLTKLKCLELS 159
             LR L  L L+ N+F+ +  P+    E+     +NL+  +FS  +PS  GNL +L+ L LS
Sbjct:   169 LRKLIVLDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHRLENLILS 228

Query:   160 QNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219
              N FS    ++   I+  T L+ L L    L   FP  + NLT L  ++   N+  G IP
Sbjct:   229 SNGFSGQVPST---ISNLTRLTKLYLDQNKLTSSFPL-VQNLTNLYELDLSYNKFFGVIP 284

Query:   220 NWLANLNRLTILSLKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY 278
             + L  L  L  L+L+ N L G +  S   + ++L  + L  N F+G +   IS+L  L++
Sbjct:   285 SSLLTLPFLAHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLINLKH 344

Query:   279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
             LDL   N S  + ++ L   LKSL  L LS N++S  + ++ +  +      L L  C++
Sbjct:   345 LDLSFLNTSYPIDLK-LFSSLKSLRSLDLSGNSISSASLSSDSY-IPLTLEMLTLRHCDI 402

Query:   339 KXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXXXX 398
                               S N++ GKIP WL ++    LQ V L  N  TGF   +    
Sbjct:   403 NEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPL--LQSVTLGNNYFTGFQGSAEILV 460

Query:   399 XXXXXXXXXRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
                       SN  +G LP  P S   + V++N  T ++   +CN +SL  +DLS+N  +
Sbjct:   461 NSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSSLAAIDLSYNNFT 520

Query:   459 GVLPQCLSNSKI--FKN-------------ATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
             G +P CL N ++   +N               +L+ +D+SHN L G++PRS  NC+ L+F
Sbjct:   521 GPIPPCLRNLELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKF 580

Query:   504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNRFS 562
             L + NN+I D FP WL  LP L+VL L+ NRF+G I  P  G + FP+LRI ++S N+F+
Sbjct:   581 LSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGPLGFPELRIFEISDNKFT 640

Query:   563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMV 622
             G LP  YF  W       K+  + M    G  + Y        +FD    Y Y  ++ + 
Sbjct:   641 GSLPPNYFVNW-------KASSRTMNQDGGLYMVY-----EEKLFDEG-GYGYTDALDLQ 687

Query:   623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNL 682
              KG+ M   K       I  S N+L G+IP SI                  HIP S+ NL
Sbjct:   688 YKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANL 747

Query:   683 TVLEXXXXXXXXXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPG 742
               LE          G IP  L  ++ LA  +VS N LTG+IPQG Q      SSFEGN G
Sbjct:   748 ENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAG 807

Query:   743 LCGKPLSRNCXXXXXXXXXXXXXXTPFE-----------FGWKIVLTGYASGLIVGVVIG 791
             LCG PL  +C                 E              + V  GY SGL++G+ I 
Sbjct:   808 LCGLPLKESCFGTGAPPMYHQKQEDKEEEEEEEEEEEEVLNGRAVAIGYGSGLLLGLAIA 867

Query:   792 QTFTTRINAWFAKTL 806
             Q   +    W  K +
Sbjct:   868 QVIASYKPEWLVKII 882

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 232/697 (33%), Positives = 328/697 (47%)

Query:   135 MNLS--SF-SGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL 190
             +NLS  +F S  +PS   NLT+L+ L L+ ++F+    +S S +   T L+   L++  L
Sbjct:    95 LNLSHNNFTSSSLPSEFSNLTRLEVLSLASSSFTGQVPSSISNLILLTHLN---LSHNEL 151

Query:   191 IGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTILSLKSNQLRGYL--PSQIG 247
              G FP  + NLT+L++++   NQ +G IP + L  L  L+ L LK N L G +  P+   
Sbjct:   152 TGSFPP-VRNLTKLSFLDLSYNQFSGAIPFDLLPTLPFLSYLDLKKNHLTGSIDVPNSSS 210

Query:   248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307
             S ++L  L L  NQF+G +   IS+L  L +L+L S N+S  + +    P LKSL+V  +
Sbjct:   211 S-SKLVRLSLGFNQFEGKIIEPISKLINLNHLELASLNISHPIDLRVFAP-LKSLLVFDI 268

Query:   308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPG 367
               N L L    + +       + L L  C++                  S N I GK+P 
Sbjct:   269 RQNRL-LPASLSSDSEFPLSLISLILIQCDIIEFPNIFKTLQNLEHIDISNNLIKGKVPE 327

Query:   368 WLLNVTTGNLQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIPPESTIHYL 427
             W   +    L   NL  N +TGF+  S               N + G  P PP  +I+  
Sbjct:   328 WFWKLP--RLSIANLVNNSLTGFEGSSEVLLNSSVQLLDFAYNSMTGAFPTPPLGSIYLS 385

Query:   428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI---------------FK 472
               NN  TG +   +CN +SL VLDLS+N  +G +PQCLSN K+               F 
Sbjct:   386 AWNNSFTGNIPLSICNRSSLIVLDLSYNKFTGPIPQCLSNLKVVNLRKNSLEGSIPDEFH 445

Query:   473 NATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF 532
             +    + +D+ +N L G++P+SL NC+ L FL + NN+I D FP WL  LP L VL L+ 
Sbjct:   446 SGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRIEDTFPFWLKALPNLHVLTLRS 505

Query:   533 NRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPG 592
             NRF G +  PD G   P L   +L   R   +L    F       +     + +    P 
Sbjct:   506 NRFFGHLSPPDRG---P-LAFPEL---RIL-ELSDNSFTG----SLPPNFFVNWKASSP- 552

Query:   593 QSLNYILPSSSAYIFDY-SLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKI 651
               +N        Y+ DY +  YIY  ++ +  KG+ M  GKV  F + I  S NKL G+I
Sbjct:   553 -KIN---EDGRIYMGDYKNAYYIYEDTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEGQI 608

Query:   652 PTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLAV 711
             P SI                  HIP SL N+T LE          G IPR+L  L+ LA 
Sbjct:   609 PESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRELGSLSFLAY 668

Query:   712 FDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCXXXXXXXXXXXXXXTPFE- 770
               V+ N L G+IPQG QF+    SSFEGN GLCG PL  +C                 + 
Sbjct:   669 ISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSCVAPPTKYPKEEDEEEEEDE 728

Query:   771 -FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTL 806
                WK V  GY  GL++G+V+     +    WF K L
Sbjct:   729 VIEWKAVFFGYWPGLLLGLVMAHVIASFKPKWFVKIL 765

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 236/720 (32%), Positives = 344/720 (47%)

Query:   109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS 168
             LF L H+ +L+L  NNF  S +P E              GNL KL+ L++S N+F     
Sbjct:   223 LFELHHIIYLNLRYNNFTSSSLPYEF-------------GNLNKLEVLDVSSNSFFGQVP 269

Query:   169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL 228
              + S + + TEL +L L +    G  P  + NLT+L+ ++   N  +G IP+ L  +  L
Sbjct:   270 PTISNLTQLTEL-YLPLNHFT--GSLPL-VQNLTKLSILHLFGNHFSGTIPSSLFTMPFL 325

Query:   229 TILSLKSNQLRGYL--PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
             + LSLK N L G +  P+   S ++L +L L  N F+G +   IS+L  L+ LDL   N 
Sbjct:   326 SYLSLKGNNLNGSIEVPNSSSS-SRLESLHLGENHFEGKILEPISKLINLKELDLSFLNT 384

Query:   287 SGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKXXXXXXX 346
             S  + +  L   LKSL++L LS + +S  +  T++  + +    L L  C++        
Sbjct:   385 SYPIDLS-LFSSLKSLLLLDLSGDWISKASL-TLDSYIPSTLEVLRLEHCDISDFPNVFK 442

Query:   347 XXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXXXXXXXXXXXX 406
                       S N+I GK P WL ++    L  V ++ NL+TGF+  S            
Sbjct:   443 TLHNLEYIALSNNRISGKFPEWLWSLP--RLSSVFITDNLLTGFEGSSEVLVNSSVQILS 500

Query:   407 XRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS 466
               +N L+G LP  P S  ++   +N   G +   +CN +SL VLDLS+N  +G +P CLS
Sbjct:   501 LDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFTGPIPPCLS 560

Query:   467 NS---KIFKNA------------TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQI 511
             N    K+ KN             T L+ +D+ +N L G++PRSL NC+ L+FL + +N I
Sbjct:   561 NLLYLKLRKNNLEGSIPDKYYEDTPLRSLDVGYNRLTGKLPRSLINCSALQFLSVDHNGI 620

Query:   512 ADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNRFSGK-LPSKY 569
              D FP  L  LP+L+VL+L  N+F+G +  P+ G + FP+LRI++++ N+ +G  L S +
Sbjct:   621 KDTFPFSLKALPKLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDF 680

Query:   570 FQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIF-DYSLQYIYAYSITMVNKGIEM 628
             F  W       K+    M +  G  + Y        IF +Y L Y Y  +I +  KG+ M
Sbjct:   681 FVNW-------KASSHTMNEDLGLYMVY-----GKVIFGNYHLTY-YE-TIDLRYKGLSM 726

Query:   629 NYGKVSNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXX 688
                 V      I  S N+L G+IP SI                  HIP S  NL  +E  
Sbjct:   727 EQRNVLTSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSFANLKKMESL 786

Query:   689 XXXXXXXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
                     G IP  L  L+ LA  +VS N L G+IPQG Q      SSFEGN GLCG PL
Sbjct:   787 DLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPL 846

Query:   749 SRNCXXXXXXXXXXXXXXTPFE-----FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFA 803
               +C                 E       WK V  GY  G+++G+ I Q  +     W A
Sbjct:   847 QESCFGTNTPPAQHPKEQEEEEEDEQVLNWKAVAIGYGIGVLLGLAIAQLISLYKPKWLA 906

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 230/694 (33%), Positives = 338/694 (48%)

Query:   138 SSF-SGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFP 195
             +SF S  +P   GNL KL+ L++S N+F      + S + + TEL +L L +    G  P
Sbjct:   206 NSFTSSTLPYEFGNLNKLELLDVSSNSFFGQVPPTISNLTQLTEL-YLPLNDFT--GSLP 262

Query:   196 SWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL--PSQIGSLTQLT 253
               + NLT+L+ +    N  +G IP+ L  +  L+ LSLK N L G +  P+   S ++L 
Sbjct:   263 L-VQNLTKLSILALFGNHFSGTIPSSLFTMPFLSYLSLKGNNLNGSIEVPNSSSS-SRLE 320

Query:   254 ALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIE-ELLPKLKSLIVLFLSANNL 312
             +L L  N F+G +   IS+L  L+ LDL  + LS +  I+  L    KSL+VL L+ + +
Sbjct:   321 SLYLGKNHFEGKILKPISKLINLKELDL--SFLSTSYPIDLSLFSSFKSLLVLDLTGDWI 378

Query:   313 S---LITRNTVNIRLQNKFVFLGLASCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWL 369
             S   L + + +++ L+  +    +  CN+                  S N++ GKIP WL
Sbjct:   379 SQAGLSSDSYISLTLEALY----MKQCNISDFPNILKSLPNLECIDVSNNRVSGKIPEWL 434

Query:   370 LNVTTGNLQFVNLSYNLITGFDRGSXXXXXXXXXXXXXRSNKLQGPLPIPPESTIHYLVS 429
              ++    L  V +  NL+TGF+  S              SN L+G LP  P S I++   
Sbjct:   435 WSLP--RLSSVFIGDNLLTGFEGSSEILVNSSVQILVLDSNSLEGALPHLPLSIIYFSAR 492

Query:   430 NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS---KIFKNATN---------- 476
              N   G +   +CN +SL VLDL +N  +G +P CLSN     + KN             
Sbjct:   493 YNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCLSNLLFLNLRKNNLEGSIPDTYFAD 552

Query:   477 --LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
               L+ +D+ +N L G++PRSL NC+ L+FL + +N I D FP +L  LP+L+VL+L  N+
Sbjct:   553 APLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFYLKVLPKLQVLLLSSNK 612

Query:   535 FHGEIGEPDTGFV-FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQ 593
             F+G +  P+ G + FP+LRI++++ N+ +G LP  +F  W A      S L   +DQ G 
Sbjct:   613 FYGPLSPPNQGSLGFPELRILEIAGNKLTGSLPQDFFVNWKA------SSLTMNEDQ-GL 665

Query:   594 SLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT 653
                Y++ S   Y   Y L Y+   +I +  KG+ M    V      I LS N+L G+IP 
Sbjct:   666 ---YMVYSKVVYGI-YYLSYLA--TIDLQYKGLSMEQKWVLTSSATIDLSGNRLEGEIPE 719

Query:   654 SISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLAVFD 713
             SI                  HIP SL NL  +E          G IP  L  L+ LA  +
Sbjct:   720 SIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSNQLSGTIPNGLGTLSFLAYVN 779

Query:   714 VSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCXXXXXXXXXXXXXXTPFE--- 770
             VS N L G+IPQG Q      SSFEGN GLCG PL + C                 E   
Sbjct:   780 VSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQQRCFGTNAPPAHQFKEEEDEEQEQ 839

Query:   771 -FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFA 803
                W+ V  GY  G+++G+ I Q   +    W A
Sbjct:   840 VLNWEGVAIGYGVGVLLGLAIAQLIASYKPEWLA 873

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 1.7e-75, Sum P(2) = 1.7e-75
 Identities = 123/404 (30%), Positives = 184/404 (45%)

Query:   408 RSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN 467
             RS KL+  + +P  S  H+  SNN  +GK+  ++C+L SL +LDLS+N  SG +P C+  
Sbjct:   467 RSTKLEKTV-VPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGK 525

Query:   468 SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKV 527
                FK+   L  ++L  N L G +P+++     L  LD+ +N++    P  L     L+V
Sbjct:   526 ---FKST--LSDLNLRRNRLSGSLPKTIIKS--LRSLDVSHNELEGKLPRSLIHFSTLEV 578

Query:   528 LMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVA-NKSQLKY 586
             L ++ NR +     P       KL+++ L  N F G++    F     I ++ N      
Sbjct:   579 LNVESNRINDTF--PFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTL 636

Query:   587 MQD--QPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSN 644
               D       ++ +  +   +   Y     Y  S+ ++NKG+EM   ++    T +  S 
Sbjct:   637 PSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSG 696

Query:   645 NKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLA 704
             NK  G+IP SI                  HIPSS+GNL  LE          GEIP++L 
Sbjct:   697 NKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELG 756

Query:   705 ELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCXXXXXXXXXXXX 764
              L+ LA  + S N L GQ+P G QF T   SSFE N GLCG+PL   C            
Sbjct:   757 NLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE-CRVVHEPTPSGES 815

Query:   765 XXTPFE--FGWKIVLTGYASGLIVGVVIGQTFTTRINAWFAKTL 806
                  E    W     G+  G+++G+ IG    +    WF K L
Sbjct:   816 ETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFKVL 859

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 233/727 (32%), Positives = 343/727 (47%)

Query:   111 HLRHLEWLSLADNNFNYSKIPS----EIMNLS-------SF-SGQVP-SLGNLTKLKCLE 157
             +LR L  L ++ N+F+ +  P+    E+ NL+       +F S  +P   GNL KL+ L+
Sbjct:   169 NLRKLTILDVSHNHFSGTLNPNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLELLD 228

Query:   158 LSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP 217
             +S N+F      + S + + TEL +L L +    G  P  + NLT+L+ ++   N  +G 
Sbjct:   229 VSSNSFFGQVPPTISNLTQLTEL-YLPLNDFT--GSLPL-VQNLTKLSILHLSDNHFSGT 284

Query:   218 IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT-QLTALDLSCNQFQGPVPSSISELKRL 276
             IP+ L  +  L+ L L  N L G +     SL+ +L  L+L  N F+G +   IS+L  L
Sbjct:   285 IPSSLFTMPFLSYLDLGGNNLSGSIEVPNSSLSSRLENLNLGENHFEGKIIEPISKLINL 344

Query:   277 EYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASC 336
             + L L   N S  + ++ L   LK L++L LS   +S  + + ++  + +    L L  C
Sbjct:   345 KELHLSFLNTSYPINLK-LFSSLKYLLLLDLSGGWISQASLS-LDSYIPSTLEALLLKHC 402

Query:   337 NLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSXX 396
             N+                  S NKI GKIP WL ++    L  V +  NL TGF+  S  
Sbjct:   403 NISVFPNILKTLPNLEFIALSTNKISGKIPEWLWSLP--RLSSVFIEENLFTGFEGSSEI 460

Query:   397 XXXXXXXXXXXRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF 456
                         SN L+G LP  P S  ++   NN   G +   +C+  SL  LDLS+N 
Sbjct:   461 LVNSSVRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSICSRRSLVFLDLSYNN 520

Query:   457 LSGVLPQCLSNSKIFKNATN---------------LKMIDLSHNLLQGRIPRSLANCTML 501
              +G +P C SN  I     N               L+ +D+ +N L G++PRSL NC+ L
Sbjct:   521 FTGPIPPCPSNFLILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSAL 580

Query:   502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNR 560
             +FL + +N I D FP  L  LP+L+VL+L  N F+G +  P+ G + FP+LRI++++ N+
Sbjct:   581 QFLSVDHNGIKDTFPFSLKALPKLQVLILHSNNFYGPLSPPNQGSLGFPELRILEIAGNK 640

Query:   561 FSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620
             F+G LP  +F+ W A      S L   +DQ G  + Y       Y F  SL+     +I 
Sbjct:   641 FTGSLPPDFFENWKA------SSLTMNEDQ-GLYMVYNKVVYGTYYFT-SLE-----AID 687

Query:   621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLG 680
             +  KG+ M   +V +    I  S N+L G+IP SI                  HIP SL 
Sbjct:   688 LQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLA 747

Query:   681 NLTVLEXXXXXXXXXXGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGN 740
             NL  +E          G IP  +  L+ LA  +VS N L G+IPQG Q      SSFEGN
Sbjct:   748 NLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGN 807

Query:   741 PGLCGKPLSRNCXXXXXXXXXXXXXXTPFE------FGWKIVLTGYASGLIVGVVIGQTF 794
              GLCG PL  +C                 E        WK V  GY  G+++G+ I Q  
Sbjct:   808 AGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAIAQLI 867

Query:   795 TTRINAW 801
              +    W
Sbjct:   868 ASYKPEW 874

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	821
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-69
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-38
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-23
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  247 bits (633), Expect = 1e-69
 Identities = 227/725 (31%), Positives = 316/725 (43%), Gaps = 153/725 (21%)

Query: 32  HAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIK 91
           HA E   LL FK S+    +   + S      +WN      D C W G+ CN ++  V+ 
Sbjct: 27  HAEELELLLSFKSSI---NDPLKYLS------NWN---SSADVCLWQGITCN-NSSRVVS 73

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-----------F 140
           ++L+   I G I  SS++F L +++ ++L++N  +   IP +I   SS           F
Sbjct: 74  IDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 141 SGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN 200
           +G +P  G++  L+ L+LS N  S         I   + L  L L    L+G+ P+ L N
Sbjct: 131 TGSIPR-GSIPNLETLDLSNNMLSGEIPND---IGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
           LT L ++    NQL G IP  L  +  L  + L  N L G +P +IG LT L  LDL  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
              GP+PSS+  LK L+YL L+ N LSG   I   +  L+ LI L LS N+LS      V
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
            I+LQN                        LE+L L +N   GKIP  L           
Sbjct: 305 -IQLQN------------------------LEILHLFSNNFTGKIPVAL----------- 328

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440
                  T   R  V+ LW         SNK  G +P             NL  GK    
Sbjct: 329 -------TSLPRLQVLQLW---------SNKFSGEIP------------KNL--GKH--- 355

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
               N+L VLDLS N L+G +P+ L +S       NL  + L  N L+G IP+SL  C  
Sbjct: 356 ----NNLTVLDLSTNNLTGEIPEGLCSSG------NLFKLILFSNSLEGEIPKSLGACRS 405

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           L  + L +N  +   PS    LP +  L +  N   G I      +  P L+++ L+ N+
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN--SRKWDMPSLQMLSLARNK 463

Query: 561 FSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620
           F G LP  +             +L+ +                              S  
Sbjct: 464 FFGGLPDSF----------GSKRLENLD----------------------------LSRN 485

Query: 621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG 680
             +  +    G +S  L  + LS NKL G+IP  +S  K L  L+LS N L G IP+S  
Sbjct: 486 QFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGN 740
            + VL  LDLS N LSGEIP+ L  + SL   ++S N+L G +P    F     S+  GN
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Query: 741 PGLCG 745
             LCG
Sbjct: 605 IDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  154 bits (391), Expect = 1e-38
 Identities = 139/418 (33%), Positives = 201/418 (48%), Gaps = 38/418 (9%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG-FDRGSVVLLWTDLVTLDLRS 409
           ++ ++LS N++ G IP  +   T+ +L+++NLS N  TG   RGS+  L T    LDL +
Sbjct: 95  IQTINLSNNQLSGPIPDDIFT-TSSSLRYLNLSNNNFTGSIPRGSIPNLET----LDLSN 149

Query: 410 NKLQGPLP--IPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS 466
           N L G +P  I   S++  L +  N+L GK+   L NL SL  L L+ N L G +P+ L 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 467 NSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELK 526
             K      +LK I L +N L G IP  +   T L  LDL  N +    PS LG L  L+
Sbjct: 210 QMK------SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 527 VLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKY 586
            L L  N+  G I  P + F   KL  +DLS N  SG++P    Q  N +++ +     +
Sbjct: 264 YLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNF 320

Query: 587 MQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNK 646
               P    +  LP          LQ +  +S    +  I  N GK +N LT + LS N 
Sbjct: 321 TGKIPVALTS--LPR---------LQVLQLWS-NKFSGEIPKNLGKHNN-LTVLDLSTNN 367

Query: 647 LIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL 706
           L G+IP  +     L  L L  N+L G IP SLG    L  + L +N+ SGE+P +  +L
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Query: 707 TSLAVFDVSDNNLTGQI-------PQGKQFNTFENSSFEGNPGLCGKPLSRNCEISES 757
             +   D+S+NNL G+I       P  +  +   N  F G P   G     N ++S +
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  106 bits (266), Expect = 1e-23
 Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 14/125 (11%)

Query: 636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNL 695
           F+ G+ L N  L G IP  IS+L+ L  +NLSGN++ G+IP SLG++T LE LDLS N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 696 SGEIPRQLAELTSLAVFDVSDNNLTGQIP--------QGKQFNTFENSSFEGNPGLCGKP 747
           +G IP  L +LTSL + +++ N+L+G++P            FN      F  N GLCG P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIP 532

Query: 748 LSRNC 752
             R C
Sbjct: 533 GLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 2e-12
 Identities = 35/84 (41%), Positives = 50/84 (59%)

Query: 207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266
           +  D   L G IPN ++ L  L  ++L  N +RG +P  +GS+T L  LDLS N F G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 267 PSSISELKRLEYLDLHSNNLSGNV 290
           P S+ +L  L  L+L+ N+LSG V
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 44/88 (50%)

Query: 183 LALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL 242
           L L N  L G  P+ +  L  L  IN   N + G IP  L ++  L +L L  N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 243 PSQIGSLTQLTALDLSCNQFQGPVPSSI 270
           P  +G LT L  L+L+ N   G VP+++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEI 539
           + L +  L+G IP  ++    L+ ++L  N I    P  LG++  L+VL L +N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 540 GEPDTGFVFPKLRIIDLSHNRFSGKLPS 567
             P++      LRI++L+ N  SG++P+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 450 LDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
           L L +  L G +P  +S  +      +L+ I+LS N ++G IP SL + T LE LDL  N
Sbjct: 423 LGLDNQGLRGFIPNDISKLR------HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476

Query: 510 QIADIFPSWLGTLPELKVLMLQFNRFHGEI 539
                 P  LG L  L++L L  N   G +
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 11/95 (11%)

Query: 405 LDLRSNKLQGPLPIPPESTIHYL----VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
           L L +  L+G +P    S + +L    +S N + G + P L ++ SL VLDLS+N  +G 
Sbjct: 423 LGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 461 LPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
           +P+ L         T+L++++L+ N L GR+P +L
Sbjct: 482 IPESLG------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 430 NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG 489
           N  L G +   +  L  L+ ++LS N + G +P  L +       T+L+++DLS+N   G
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------ITSLEVLDLSYNSFNG 480

Query: 490 RIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
            IP SL   T L  L+L  N ++   P+ LG   
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 10/52 (19%)

Query: 32 HAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCN 83
             +R ALL FK SL                +SWN      D CSW GV C+
Sbjct: 1  LNDDRDALLAFKSSLNG--------DPSGALSSWN--PSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           +L+ LDLS+N L+ +          FK   NLK++DLS N L    P + +    L  LD
Sbjct: 1   NLKSLDLSNNRLTVI------PDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54

Query: 506 LGNNQI 511
           L  N +
Sbjct: 55  LSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 88/293 (30%), Positives = 130/293 (44%), Gaps = 19/293 (6%)

Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT-QLTALD 256
           L+NL  L  ++ +LN+L   I   L  L  LT L L +N +   +P  IG L   L  LD
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELD 146

Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316
           LS N+ +  +PS +  L  L+ LDL  N+LS    +   L  L +L    LS N +S + 
Sbjct: 147 LSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD---LSGNKISDL- 201

Query: 317 RNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN 376
                I L +    L L++ ++ E L  L++   L  L+LS NK+              N
Sbjct: 202 --PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP---ESIGNLSN 256

Query: 377 LQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP-IPPESTIHYLVSNNLLTG 435
           L+ ++LS N I+     S +   T+L  LDL  N L   LP I     +  L+ N LLT 
Sbjct: 257 LETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
           K       LNS+ + +   +      P+ LS  +   N   L       NL +
Sbjct: 314 KALEL--KLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNR 364

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 48.9 bits (116), Expect = 1e-05
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 37/251 (14%)

Query: 300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSAN 359
           + +  L L  N L  +  N     LQ     L   S  L      L   D ++ ++LS N
Sbjct: 199 EQITTLILDNNELKSLPEN-----LQGNIKTLYANSNQLTSIPATL--PDTIQEMELSIN 251

Query: 360 KI---PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPL 416
           +I   P ++P          LQ ++L +N I+         L  +L  L +  N ++   
Sbjct: 252 RITELPERLPS--------ALQSLDLFHNKISCLPEN----LPEELRYLSVYDNSIRTLP 299

Query: 417 PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNAT- 475
              P    H  V +N LT         L +L   + +   L   LP  L    + KN   
Sbjct: 300 AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT 359

Query: 476 --------NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI---FPSWLGTLPE 524
                    +  +D+S N L   +P +L     L+ +    N +  +    P + G  P+
Sbjct: 360 VLPETLPPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQ 416

Query: 525 LKVLMLQFNRF 535
              +++++N F
Sbjct: 417 PTRIIVEYNPF 427

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query: 174 IAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233
           I+K   L  + L+  ++ G  P  L ++T L  ++   N   G IP  L  L  L IL+L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 234 KSNQLRGYLPSQIGSL 249
             N L G +P+ +G  
Sbjct: 498 NGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query: 660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719
            L  L+LS N L      +   L  L+ LDLS NNL+   P   + L SL   D+S NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNL 695
           L  + LSNN+L      +   L  L  L+LSGNNL    P +   L  L SLDLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
            L  L L +N+L          L  L  LDLS N      P + S L  L  LDL  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 70/249 (28%), Positives = 102/249 (40%), Gaps = 25/249 (10%)

Query: 115 LEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWI 174
           +  L  ++N  N   +PS  +NL+     +  L  LT L  L+L  NN +         I
Sbjct: 80  ISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD--------I 131

Query: 175 AKQTELSWLALANINL----IGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
                L    L  ++L    I   PS L NL  L  ++   N L+  +P  L+NL+ L  
Sbjct: 132 PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNN 190

Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV 290
           L L  N++   LP +I  L+ L  LDLS N     + SS+S LK L  L+L +N L    
Sbjct: 191 LDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL---E 245

Query: 291 YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQ 350
            + E +  L +L  L LS N +S       +I        L     +     + L     
Sbjct: 246 DLPESIGNLSNLETLDLSNNQIS-------SISSLGSLTNLRELDLSGNSLSNALPLIAL 298

Query: 351 LELLDLSAN 359
           L LL     
Sbjct: 299 LLLLLELLL 307

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           NLK +DLS+N L      +      L+ LDL  N +  I P     LP L+ L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           L+ LDL NN++  I       LP LKVL L  N        P+     P LR +DLS N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT--SISPEAFSGLPSLRSLDLSGNN 59

Query: 561 F 561
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 4/92 (4%)

Query: 634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693
            + L  + LSNN +I ++ +S+S LK L+ L LS NN L  +P S+GNL+ LE+LDLSNN
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNN 265

Query: 694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725
            +S      L  LT+L   D+S N+L+  +P 
Sbjct: 266 QIS--SISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + LS NK+   +P  I  L  L  L+LS N+++  + SSL NL  L  L+LSNN L 
Sbjct: 188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISE 756
            ++P  +  L++L   D+S+N ++  I               GN      PL     +  
Sbjct: 246 -DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL 303

Query: 757 SSQKEDQDSETPFEFGWKIVLTGYA 781
                   +    E     +L    
Sbjct: 304 ELLLNLLLTLKALELKLNSILLNNN 328

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 23/126 (18%)

Query: 77  WDGVKCNED--TGH--VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPS 132
           W G  C  D   G   +  L L +  + G I +  S   LRHL+ ++L+ N+     IP 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIR-GNIP- 459

Query: 133 EIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192
                       PSLG++T L+ L+LS N+F+     S   + + T L  L L   +L G
Sbjct: 460 ------------PSLGSITSLEVLDLSYNSFNGSIPES---LGQLTSLRILNLNGNSLSG 504

Query: 193 EFPSWL 198
             P+ L
Sbjct: 505 RVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
           +SNN LT         L +L+VLDLS N L+ + P+       F    +L+ +DLS N L
Sbjct: 7   LSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA------FSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 635 NFLTGIILSNNKLIGKIPTSISELK-GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693
             LT + L NN  I  IP  I  LK  L  L+LS N +   +PS L NL  L++LDLS N
Sbjct: 116 TNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173

Query: 694 NLSGEIPRQLAELTSLAVFDVSDNNLT 720
           +LS ++P+ L+ L++L   D+S N ++
Sbjct: 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 58/239 (24%), Positives = 88/239 (36%), Gaps = 49/239 (20%)

Query: 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFP------SWLMN 200
           L     L+ L+LS N            + + + L  L L N N +G+             
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN-NGLGDRGLRLLAKGLKDL 135

Query: 201 LTQLTYINFDLNQLTG----PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD 256
              L  +    N+L G     +   L     L  L+L +N +         +  +  A  
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG-------DAGIRALAEG 188

Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLS--GNVYIEELLPKLKSLIVLFLSANNLS- 313
           L  N               LE LDL++N L+  G   + E L  LKSL VL L  NNL+ 
Sbjct: 189 LKANC-------------NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235

Query: 314 -----LITRN-TVNIRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLSANKI 361
                L +   + NI L      L L+  ++     K+  + L +++ L  LDL  NK 
Sbjct: 236 AGAAALASALLSPNISLLT----LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	821
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
PRK15386	426	type III secretion protein GogB; Provisional	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG4341	483	consensus F-box protein containing LRR [General fu	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.75
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.48
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.01
KOG4308	478	consensus LRR-containing protein [Function unknown	94.03
KOG4308	478	consensus LRR-containing protein [Function unknown	93.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.61
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.37
smart00370	26	LRR Leucine-rich repeats, outliers.	87.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.06
smart00370	26	LRR Leucine-rich repeats, outliers.	87.06
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.38
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	81.66

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.7e-72  Score=688.42  Aligned_cols=584  Identities=34%  Similarity=0.526  Sum_probs=492.0

Q ss_pred             CHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCccccc
Q 041782           32 HAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFH  111 (821)
Q Consensus        32 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~  111 (821)
                      .++|++||++||+++.++..         .+.+|+.   ..+||.|.||+|+. .++|+.|+|+++++.|.++.  ++..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~---------~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~   91 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK---------YLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR   91 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc---------cCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence            45799999999999975443         6789976   67899999999985 47999999999999998876  8999


Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccc
Q 041782          112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLI  191 (821)
Q Consensus       112 l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~  191 (821)
                      +++|++|+|++|.+.+ .+|..+            +..+++|++|+|++|.+++.+|   .  +.+++|++|++++|.+.
T Consensus        92 l~~L~~L~Ls~n~~~~-~ip~~~------------~~~l~~L~~L~Ls~n~l~~~~p---~--~~l~~L~~L~Ls~n~~~  153 (968)
T PLN00113         92 LPYIQTINLSNNQLSG-PIPDDI------------FTTSSSLRYLNLSNNNFTGSIP---R--GSIPNLETLDLSNNMLS  153 (968)
T ss_pred             CCCCCEEECCCCccCC-cCChHH------------hccCCCCCEEECcCCccccccC---c--cccCCCCEEECcCCccc
Confidence            9999999999999874 477663            5589999999999999999887   2  56899999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782          192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS  271 (821)
Q Consensus       192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  271 (821)
                      +.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++
T Consensus       154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-chhhhhhcCCCc
Q 041782          272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQ  350 (821)
Q Consensus       272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~  350 (821)
                      ++++|++|++++|.+.+.+|.  .+.++++|++|++++|.+.+..+..+  ..+++|+.|++++|.+ +.+|..+..+++
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             cCCCCCEEECcCceeccccCh--hHhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            999999999999999876654  58899999999999998876444332  1344555555555555 344555555555


Q ss_pred             cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782          351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN  430 (821)
Q Consensus       351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~  430 (821)
                      |+.|++++|.+.+..|..+..+  ++|+.|++++|.+++..+. .+..++                     +++.+++++
T Consensus       310 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~-~l~~~~---------------------~L~~L~Ls~  365 (968)
T PLN00113        310 LEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPK-NLGKHN---------------------NLTVLDLST  365 (968)
T ss_pred             CcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCCh-HHhCCC---------------------CCcEEECCC
Confidence            5555555555555555554444  4455555555554443332 223334                     445555555


Q ss_pred             CccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc
Q 041782          431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ  510 (821)
Q Consensus       431 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  510 (821)
                      |.+.+.+|..++.+++|+.|++++|.+.+.+|..+.      .+++|+.|++++|.+++.+|..+..+++|+.|++++|+
T Consensus       366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG------ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh------CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence            555667788888899999999999999999887654      47899999999999999999999999999999999999


Q ss_pred             CCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccC
Q 041782          511 IADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ  590 (821)
Q Consensus       511 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~  590 (821)
                      +++.+|..+..+++|+.|++++|++.+.+|...   ..++|+.|++++|++++.+|.. +..                  
T Consensus       440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~-~~~------------------  497 (968)
T PLN00113        440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRK-LGS------------------  497 (968)
T ss_pred             ccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChh-hhh------------------
Confidence            999999988999999999999999998888754   3589999999999999888754 221                  


Q ss_pred             CCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcc
Q 041782          591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN  670 (821)
Q Consensus       591 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~  670 (821)
                                                                 ++.|+.|+|++|++.+.+|..++++++|++|+|++|.
T Consensus       498 -------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        498 -------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             -------------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                                                       2348889999999999999999999999999999999


Q ss_pred             cCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCC
Q 041782          671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       671 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      +++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..++|.++...++.||+.+||.+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-56  Score=548.69  Aligned_cols=517  Identities=31%  Similarity=0.462  Sum_probs=425.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhc-cCCCCCCEEecCCcccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWI-AKQTELSWLALANINLI  191 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~l~~L~~L~L~~n~~~  191 (821)
                      .+++.|||++|.+.+. +|..             +..+++|++|+|++|++++.+|   ..+ ..+++|++|++++|++.
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~~~~~ip---~~~~~~l~~L~~L~Ls~n~l~  131 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSA-------------IFRLPYIQTINLSNNQLSGPIP---DDIFTTSSSLRYLNLSNNNFT  131 (968)
T ss_pred             CcEEEEEecCCCcccc-CChH-------------HhCCCCCCEEECCCCccCCcCC---hHHhccCCCCCEEECcCCccc
Confidence            4789999999988753 4554             7889999999999999998888   444 48999999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782          192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS  271 (821)
Q Consensus       192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  271 (821)
                      +.+|.  +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++
T Consensus       132 ~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  209 (968)
T PLN00113        132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG  209 (968)
T ss_pred             cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence            98885  5689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-chhhhhhcCCCc
Q 041782          272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQ  350 (821)
Q Consensus       272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~  350 (821)
                      ++++|++|++++|.+.+.+|.  .+.++++|++|++++|.+++..+..+  ..+++|+.|++++|.+ +.+|..+..+++
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  285 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIFSLQK  285 (968)
T ss_pred             CcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHhhccC
Confidence            999999999999999876664  48899999999999998876544332  2345555555555555 345555555555


Q ss_pred             cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782          351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN  430 (821)
Q Consensus       351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~  430 (821)
                      |++|++++|.+.+.+|..+..+  ++|+.|++++|.+++..+. .+..+++|                     +.+++++
T Consensus       286 L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~l~~n~~~~~~~~-~~~~l~~L---------------------~~L~L~~  341 (968)
T PLN00113        286 LISLDLSDNSLSGEIPELVIQL--QNLEILHLFSNNFTGKIPV-ALTSLPRL---------------------QVLQLWS  341 (968)
T ss_pred             cCEEECcCCeeccCCChhHcCC--CCCcEEECCCCccCCcCCh-hHhcCCCC---------------------CEEECcC
Confidence            5555555555555555555544  4555555555555544433 22334444                     4444555


Q ss_pred             CccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc
Q 041782          431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ  510 (821)
Q Consensus       431 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  510 (821)
                      |.+.+.+|..++.+++|+.|++++|++.+.+|..+.      .+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus       342 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            555567788889999999999999999999887654      36889999999999999999999999999999999999


Q ss_pred             CCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccC
Q 041782          511 IADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ  590 (821)
Q Consensus       511 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~  590 (821)
                      +++..|..+..+++|+.|++++|.+.+.++...  ..+++|+.|++++|++.+.+|... .                   
T Consensus       416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-------------------  473 (968)
T PLN00113        416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-------------------  473 (968)
T ss_pred             eeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-------------------
Confidence            999999999999999999999999998887765  568999999999999988777421 0                   


Q ss_pred             CCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcc
Q 041782          591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN  670 (821)
Q Consensus       591 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~  670 (821)
                                                                 ...|+.||+++|++++.+|..+.++++|++|+|++|+
T Consensus       474 -------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  510 (968)
T PLN00113        474 -------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK  510 (968)
T ss_pred             -------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence                                                       1238899999999999999999999999999999999


Q ss_pred             cCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCCCCCCC
Q 041782          671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       671 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      +++.+|+.++++++|++|+|++|++++.+|..|..+++|++|++++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus       511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999999999999975 234556667777887655433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-37  Score=321.96  Aligned_cols=232  Identities=23%  Similarity=0.279  Sum_probs=150.1

Q ss_pred             hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      ..|.++++|+.|+|..|+|.-.      ..-.|.++++|+.|.+..|++...-...|-.|.++++|+|+.|++...-..|
T Consensus       215 r~Fk~L~~L~~LdLnrN~iriv------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIV------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             HHhhhcchhhhhhccccceeee------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence            4566678888888888877633      2335777888888888888887666677888888888888888888777778


Q ss_pred             hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccch--hcccCCCCCcc
Q 041782          519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLK--YMQDQPGQSLN  596 (821)
Q Consensus       519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~--~~~~~~~~~l~  596 (821)
                      +.++++|+.|+|++|.|...-++..  ..+++|++|||++|+++ .++++.|.++..|+.+.++.+.  ++..       
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-------  358 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAE-------  358 (873)
T ss_pred             ccccchhhhhccchhhhheeecchh--hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHh-------
Confidence            8888888888888888875544443  55788888888888887 6777767766665555444221  1110       


Q ss_pred             cccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccc---ccccCCCCCEEeCCCcccCc
Q 041782          597 YILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT---SISELKGLNCLNLSGNNLLG  673 (821)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~l~~L~~L~~L~Ls~N~l~~  673 (821)
                                                      .-..-+++|++|||++|.++..|-+   .|.+|++|+.|+|.+|++..
T Consensus       359 --------------------------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  359 --------------------------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             --------------------------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence                                            0000133455666666666544433   25556666666666666664


Q ss_pred             chhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782          674 HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL  719 (821)
Q Consensus       674 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  719 (821)
                      ..-..|.++..||.|||.+|.|..+.|..|..+ .|+.|-+..-.+
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            444456666666666666666666666666665 555555544333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8e-41  Score=331.27  Aligned_cols=489  Identities=25%  Similarity=0.303  Sum_probs=333.3

Q ss_pred             CCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccc
Q 041782          112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLI  191 (821)
Q Consensus       112 l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~  191 (821)
                      -..|+.|++++|.+..  +-+.             +.++..|.+|++++|+++..+    ..++.+..++.++.++|++.
T Consensus        44 qv~l~~lils~N~l~~--l~~d-------------l~nL~~l~vl~~~~n~l~~lp----~aig~l~~l~~l~vs~n~ls  104 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEV--LRED-------------LKNLACLTVLNVHDNKLSQLP----AAIGELEALKSLNVSHNKLS  104 (565)
T ss_pred             hcchhhhhhccCchhh--ccHh-------------hhcccceeEEEeccchhhhCC----HHHHHHHHHHHhhcccchHh
Confidence            3456777777776642  3333             667777888888888777654    45677777777888887774


Q ss_pred             ccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782          192 GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS  271 (821)
Q Consensus       192 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  271 (821)
                       ++|..++.+.+|+.|++++|.+. .+|++++.+..|+.++..+|+++ ..|.++.++.+|..|++.+|++....|. .-
T Consensus       105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i  180 (565)
T KOG0472|consen  105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HI  180 (565)
T ss_pred             -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HH
Confidence             67777778888888888888777 66777777778888888888877 5677777788888888888887744443 33


Q ss_pred             CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhc-CCCc
Q 041782          272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLN-DQDQ  350 (821)
Q Consensus       272 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~-~l~~  350 (821)
                      +++.|++||...|-+. .+|.  .++.+.+|+-|++..|.+...+..    ..+..|++++++.|.+..+|+... ++++
T Consensus       181 ~m~~L~~ld~~~N~L~-tlP~--~lg~l~~L~~LyL~~Nki~~lPef----~gcs~L~Elh~g~N~i~~lpae~~~~L~~  253 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLLE-TLPP--ELGGLESLELLYLRRNKIRFLPEF----PGCSLLKELHVGENQIEMLPAEHLKHLNS  253 (565)
T ss_pred             HHHHHHhcccchhhhh-cCCh--hhcchhhhHHHHhhhcccccCCCC----CccHHHHHHHhcccHHHhhHHHHhccccc
Confidence            4778888888777765 3443  377788888888888887776632    246777788888888877776654 7778


Q ss_pred             cceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccC
Q 041782          351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN  430 (821)
Q Consensus       351 L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~  430 (821)
                      +.+||+.+|++. +.|+.+.-+  .+|.+||+++|.+++.++.  .+.+ .|+.|.+.+|.+...-..         +  
T Consensus       254 l~vLDLRdNklk-e~Pde~clL--rsL~rLDlSNN~is~Lp~s--Lgnl-hL~~L~leGNPlrTiRr~---------i--  316 (565)
T KOG0472|consen  254 LLVLDLRDNKLK-EVPDEICLL--RSLERLDLSNNDISSLPYS--LGNL-HLKFLALEGNPLRTIRRE---------I--  316 (565)
T ss_pred             ceeeeccccccc-cCchHHHHh--hhhhhhcccCCccccCCcc--cccc-eeeehhhcCCchHHHHHH---------H--
Confidence            888888888876 667777666  6778888888888777764  5555 677777777765421000         0  


Q ss_pred             CccCCCCchhhhCCCC-CcEEEcCCC---c-CcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCC---CC
Q 041782          431 NLLTGKLAPWLCNLNS-LRVLDLSHN---F-LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM---LE  502 (821)
Q Consensus       431 n~~~~~~~~~l~~l~~-L~~L~Ls~n---~-l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~  502 (821)
                        +.+.-...+..+.+ .+.=-++.-   . -.+..|.+  .........+.+.|++++-+++ .+|........   .+
T Consensus       317 --i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~--~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt  391 (565)
T KOG0472|consen  317 --ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE--SFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVT  391 (565)
T ss_pred             --HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC--cccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceE
Confidence              00000000000000 000000000   0 00001111  0111233557788888888887 56654433333   77


Q ss_pred             EEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccc
Q 041782          503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS  582 (821)
Q Consensus       503 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~  582 (821)
                      ..+++.|++... |..+..+..+.+.-+..|+..+.+|...  +.+++|..|+|++|.+. .+|.+.+.           
T Consensus       392 ~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~isfv~~~l--~~l~kLt~L~L~NN~Ln-~LP~e~~~-----------  456 (565)
T KOG0472|consen  392 SVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKISFVPLEL--SQLQKLTFLDLSNNLLN-DLPEEMGS-----------  456 (565)
T ss_pred             EEecccchHhhh-hhhhHHHHHHHHHHHhhcCccccchHHH--Hhhhcceeeecccchhh-hcchhhhh-----------
Confidence            889999998765 6666666665554444444444666655  67899999999998885 77765321           


Q ss_pred             cchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCC
Q 041782          583 QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN  662 (821)
Q Consensus       583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~  662 (821)
                                                                         +..|+.||+|.|+|. .+|..+..+..++
T Consensus       457 ---------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE  484 (565)
T KOG0472|consen  457 ---------------------------------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLE  484 (565)
T ss_pred             ---------------------------------------------------hhhhheecccccccc-cchHHHhhHHHHH
Confidence                                                               122888999999988 8899888888888


Q ss_pred             EEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccc
Q 041782          663 CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT  720 (821)
Q Consensus       663 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  720 (821)
                      .+-.++|++....|+.++++.+|.+|||.+|.+. .+|..++++++|++|++.+|+|.
T Consensus       485 tllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  485 TLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888889999777777999999999999999998 78889999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-36  Score=309.30  Aligned_cols=371  Identities=22%  Similarity=0.232  Sum_probs=267.3

Q ss_pred             CCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeecccc
Q 041782          204 LTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS  283 (821)
Q Consensus       204 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  283 (821)
                      -+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            346777777777777777777777777777777777 5666555556677777777777766666777777777777777


Q ss_pred             CCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhh-hcCCCccceEecccCCCC
Q 041782          284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF-LNDQDQLELLDLSANKIP  362 (821)
Q Consensus       284 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-l~~l~~L~~L~Ls~n~l~  362 (821)
                      |.++ .++. ..|..-.++++|+|++|.|+.+....|.  .+.+|..|.|+.|++..+|.. |..+++|+.|+|..|+|.
T Consensus       159 N~is-~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  159 NLIS-EIPK-PSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             chhh-cccC-CCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            7776 3444 3366667777777777777776665543  233555555555555555432 334666666666666554


Q ss_pred             CCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhh
Q 041782          363 GKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC  442 (821)
Q Consensus       363 ~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~  442 (821)
                      -.--..                           +..+++|+.|.+..|++.                     ..-...|.
T Consensus       235 ive~lt---------------------------FqgL~Sl~nlklqrN~I~---------------------kL~DG~Fy  266 (873)
T KOG4194|consen  235 IVEGLT---------------------------FQGLPSLQNLKLQRNDIS---------------------KLDDGAFY  266 (873)
T ss_pred             eehhhh---------------------------hcCchhhhhhhhhhcCcc---------------------cccCccee
Confidence            221222                           233344444444444433                     12224567


Q ss_pred             CCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCC
Q 041782          443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL  522 (821)
Q Consensus       443 ~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  522 (821)
                      .+.++++|+|+.|++...-..+      +-+++.|+.|++++|.|...-++++..+++|++|+|++|+|+...++.|..+
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGW------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL  340 (873)
T ss_pred             eecccceeecccchhhhhhccc------ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence            7899999999999998774444      3458999999999999998888899999999999999999999999999999


Q ss_pred             CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782          523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS  602 (821)
Q Consensus       523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  602 (821)
                      ..|++|+|++|++...-...+  ..+++|+.|||++|.+++.|.... .-                              
T Consensus       341 ~~Le~LnLs~Nsi~~l~e~af--~~lssL~~LdLr~N~ls~~IEDaa-~~------------------------------  387 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDHLAEGAF--VGLSSLHKLDLRSNELSWCIEDAA-VA------------------------------  387 (873)
T ss_pred             HHhhhhcccccchHHHHhhHH--HHhhhhhhhcCcCCeEEEEEecch-hh------------------------------
Confidence            999999999999874333333  458999999999999987665421 00                              


Q ss_pred             cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc
Q 041782          603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL  682 (821)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l  682 (821)
                                                 |.+ ++.|+.|+|.+|++....-..|.++.+|++|||.+|.|...-|+.|..+
T Consensus       388 ---------------------------f~g-l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  388 ---------------------------FNG-LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             ---------------------------hcc-chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence                                       011 4568999999999996666789999999999999999999999999999


Q ss_pred             cCCCeEeCCCCcc
Q 041782          683 TVLESLDLSNNNL  695 (821)
Q Consensus       683 ~~L~~L~Ls~N~l  695 (821)
                       .|+.|.++.-.+
T Consensus       440 -~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  440 -ELKELVMNSSSF  451 (873)
T ss_pred             -hhhhhhhcccce
Confidence             899988765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.7e-39  Score=319.54  Aligned_cols=494  Identities=26%  Similarity=0.342  Sum_probs=378.3

Q ss_pred             EEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782           89 VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS  168 (821)
Q Consensus        89 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~  168 (821)
                      ...+.++++.+.-..+   .+.++..|.+|++++|++.  ++|+.             ++.+..++.|+.++|+++.. |
T Consensus        47 l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~--~lp~a-------------ig~l~~l~~l~vs~n~ls~l-p  107 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLS--QLPAA-------------IGELEALKSLNVSHNKLSEL-P  107 (565)
T ss_pred             hhhhhhccCchhhccH---hhhcccceeEEEeccchhh--hCCHH-------------HHHHHHHHHhhcccchHhhc-c
Confidence            4567888887764332   7889999999999999985  57777             78889999999999999865 4


Q ss_pred             CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCC
Q 041782          169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS  248 (821)
Q Consensus       169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  248 (821)
                         ..+..+.+|+.++.++|.+. ++|++++.+..|+.++..+|+++ ..|+.+.++.+|..|++.+|+++...| ..-+
T Consensus       108 ---~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~  181 (565)
T KOG0472|consen  108 ---EQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIA  181 (565)
T ss_pred             ---HHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHH
Confidence               67889999999999999985 67888999999999999999999 788999999999999999999995544 4445


Q ss_pred             CCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCe
Q 041782          249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKF  328 (821)
Q Consensus       249 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  328 (821)
                      ++.|++||...|.++ .+|+.++.+.+|+.|++..|++. ..|.   |+.+..|++++++.|.+..++....  ..++++
T Consensus       182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe---f~gcs~L~Elh~g~N~i~~lpae~~--~~L~~l  254 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE---FPGCSLLKELHVGENQIEMLPAEHL--KHLNSL  254 (565)
T ss_pred             HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC---CCccHHHHHHHhcccHHHhhHHHHh--cccccc
Confidence            999999999999888 78999999999999999999997 3443   8999999999999999998876654  368899


Q ss_pred             eEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccc-cCCccEEEe
Q 041782          329 VFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL-WTDLVTLDL  407 (821)
Q Consensus       329 ~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~~L~~L~L  407 (821)
                      ..|++.+|+++++|+.+..+++|++||+++|.++ .+|..++++   .|+.|-+.+|.+..+..+..... -.-|++|.=
T Consensus       255 ~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  255 LVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             eeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence            9999999999999999999999999999999998 567778886   69999999999875543211000 001222210


Q ss_pred             ccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccc
Q 041782          408 RSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL  487 (821)
Q Consensus       408 ~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l  487 (821)
                         .+...-+.....-+   .+.-............+.+.+.|++++-+++. +|+.....   ..-.-....+++.|++
T Consensus       331 ---~~~~dglS~se~~~---e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea---~~~~~Vt~VnfskNqL  400 (565)
T KOG0472|consen  331 ---KIKDDGLSQSEGGT---ETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEA---AKSEIVTSVNFSKNQL  400 (565)
T ss_pred             ---hhccCCCCCCcccc---cccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHH---hhhcceEEEecccchH
Confidence               11100000000000   00000000111223445678899999988884 45433221   1122377899999999


Q ss_pred             cccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCCh
Q 041782          488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPS  567 (821)
Q Consensus       488 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  567 (821)
                      . ++|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|.+. .+|..+  +.+..|+.||+++|+|. .+|.
T Consensus       401 ~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~--~~lv~Lq~LnlS~NrFr-~lP~  475 (565)
T KOG0472|consen  401 C-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM--GSLVRLQTLNLSFNRFR-MLPE  475 (565)
T ss_pred             h-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh--hhhhhhheecccccccc-cchH
Confidence            8 78888887777766555555555667889999999999999999876 677766  66888999999999986 6664


Q ss_pred             hhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccc
Q 041782          568 KYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKL  647 (821)
Q Consensus       568 ~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  647 (821)
                      -+. .                                                             +..++.+-.++|++
T Consensus       476 ~~y-~-------------------------------------------------------------lq~lEtllas~nqi  493 (565)
T KOG0472|consen  476 CLY-E-------------------------------------------------------------LQTLETLLASNNQI  493 (565)
T ss_pred             HHh-h-------------------------------------------------------------HHHHHHHHhccccc
Confidence            321 0                                                             11245555677888


Q ss_pred             cCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782          648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS  696 (821)
Q Consensus       648 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  696 (821)
                      ....|..+.++.+|..|||.+|.+. .||..++++++|++|+|++|.+.
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8666666999999999999999998 88889999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=322.65  Aligned_cols=464  Identities=28%  Similarity=0.346  Sum_probs=255.3

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      .++.|+++.|.+-..+-   ......-+|+.|++++|.+ +.+|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|
T Consensus        22 ~~~~ln~~~N~~l~~pl---~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPL---EFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL   96 (1081)
T ss_pred             HHHhhhccccccccCch---HHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence            35666666665543321   3333444466666666665 355666666777777777777766 556666677777777


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      .|.+|.+. .+|..+..+++|++|++++|++. .+|..+..++.++.+..++|....      .++... ++.+++..|.
T Consensus        97 nL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~------~lg~~~-ik~~~l~~n~  167 (1081)
T KOG0618|consen   97 NLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ------RLGQTS-IKKLDLRLNV  167 (1081)
T ss_pred             eeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh------hhcccc-chhhhhhhhh
Confidence            77777666 56777777777777777777766 566666677777777777662111      122222 4455555444


Q ss_pred             cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782          312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD  391 (821)
Q Consensus       312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~  391 (821)
                      +.+....                         .+..+..  .|||++|.+..   ..+.++  .+|+.+....|++..+.
T Consensus       168 l~~~~~~-------------------------~i~~l~~--~ldLr~N~~~~---~dls~~--~~l~~l~c~rn~ls~l~  215 (1081)
T KOG0618|consen  168 LGGSFLI-------------------------DIYNLTH--QLDLRYNEMEV---LDLSNL--ANLEVLHCERNQLSELE  215 (1081)
T ss_pred             cccchhc-------------------------chhhhhe--eeecccchhhh---hhhhhc--cchhhhhhhhcccceEE
Confidence            4332211                         1111111  24444444330   111222  34444444444444332


Q ss_pred             CCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCccc
Q 041782          392 RGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI  470 (821)
Q Consensus       392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~  470 (821)
                      .     ..++++.|+.++|.++...+.+ +..++.++++.|++++ +|+|++.+.+|+.++..+|+++ .+|..+.    
T Consensus       216 ~-----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~----  284 (1081)
T KOG0618|consen  216 I-----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRIS----  284 (1081)
T ss_pred             e-----cCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHh----
Confidence            1     1244555555555555333333 4455555566665553 5588888888888888888885 4444332    


Q ss_pred             ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC-CCEEEccCCcCcccCCCCCccCCCC
Q 041782          471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE-LKVLMLQFNRFHGEIGEPDTGFVFP  549 (821)
Q Consensus       471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~  549 (821)
                        ..++|+.|.+..|.+. -+|.....+++|++|+|..|++....+..+..... |..|+.+.|++... | .......+
T Consensus       285 --~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p-~~~e~~~~  359 (1081)
T KOG0618|consen  285 --RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-P-SYEENNHA  359 (1081)
T ss_pred             --hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc-c-cccchhhH
Confidence              2577888888888887 56666777888888888888887765544444333 66666666666522 2 12223455


Q ss_pred             CCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeee
Q 041782          550 KLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN  629 (821)
Q Consensus       550 ~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (821)
                      .|+.|.+.+|.++..+-+- +.+                                                         
T Consensus       360 ~Lq~LylanN~Ltd~c~p~-l~~---------------------------------------------------------  381 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPV-LVN---------------------------------------------------------  381 (1081)
T ss_pred             HHHHHHHhcCcccccchhh-hcc---------------------------------------------------------
Confidence            6666667776666432111 111                                                         


Q ss_pred             cccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCc
Q 041782          630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSL  709 (821)
Q Consensus       630 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  709 (821)
                          ...|+.|+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|++|...+|++. ..| .+..+++|
T Consensus       382 ----~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  382 ----FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             ----ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence                122555555555555222233555555555555555555 45555555555555555555555 334 45555555


Q ss_pred             cEEEcccCcccc-cCCCCCCCCCCCCCccCCCCC
Q 041782          710 AVFDVSDNNLTG-QIPQGKQFNTFENSSFEGNPG  742 (821)
Q Consensus       710 ~~L~ls~N~l~g-~iP~~~~~~~~~~~~~~gn~~  742 (821)
                      +.+|+|.|+|+- .+|......++....+.||.+
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            555555555543 222222223444455555553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-35  Score=321.02  Aligned_cols=468  Identities=27%  Similarity=0.344  Sum_probs=257.5

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                      +..-..++.|+++.|.+-.  .|-++            +.+.-+|+.||+++|.++. .|   ..+..+.+|+.|+++.|
T Consensus        17 i~~~~~~~~ln~~~N~~l~--~pl~~------------~~~~v~L~~l~lsnn~~~~-fp---~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen   17 ILNNEALQILNLRRNSLLS--RPLEF------------VEKRVKLKSLDLSNNQISS-FP---IQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             hccHHHHHhhhcccccccc--CchHH------------hhheeeeEEeecccccccc-CC---chhhhHHHHhhcccchh
Confidence            3333446667777765532  22221            3444557777777776653 33   44566677777777776


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS  268 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  268 (821)
                      .+ ...|.+.+++.+|++|.|.+|.+. ..|.++..+++|++|+++.|.+. .+|..+..++.++.+..++|.....   
T Consensus        79 ~i-~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---  152 (1081)
T KOG0618|consen   79 YI-RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---  152 (1081)
T ss_pred             hH-hhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh---
Confidence            66 355666777777777777777776 66777777777777777777776 5676777777777777777722212   


Q ss_pred             cccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCC
Q 041782          269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ  348 (821)
Q Consensus       269 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l  348 (821)
                       ++... ++.+++..|.+.+.+.. + ...++.  .|+|.+|.+....     +..+++|+.+....|++..+-   -.-
T Consensus       153 -lg~~~-ik~~~l~~n~l~~~~~~-~-i~~l~~--~ldLr~N~~~~~d-----ls~~~~l~~l~c~rn~ls~l~---~~g  218 (1081)
T KOG0618|consen  153 -LGQTS-IKKLDLRLNVLGGSFLI-D-IYNLTH--QLDLRYNEMEVLD-----LSNLANLEVLHCERNQLSELE---ISG  218 (1081)
T ss_pred             -hcccc-chhhhhhhhhcccchhc-c-hhhhhe--eeecccchhhhhh-----hhhccchhhhhhhhcccceEE---ecC
Confidence             22222 66666666666654443 1 333333  4677776665211     123455555555555543331   123


Q ss_pred             CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782          349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV  428 (821)
Q Consensus       349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l  428 (821)
                      ++|+.|+.++|.++...+....    .+|++++++.|++++.+  .+...+.+|+.++..+|.++               
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p----~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l~---------------  277 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVP----LNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRLV---------------  277 (1081)
T ss_pred             cchheeeeccCcceeecccccc----ccceeeecchhhhhcch--HHHHhcccceEecccchhHH---------------
Confidence            5666777777766533222111    46777777777777666  25666677777777777664               


Q ss_pred             cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh-hcCCC-CCCEEeC
Q 041782          429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS-LANCT-MLEFLDL  506 (821)
Q Consensus       429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~-~L~~L~L  506 (821)
                             .+|..+....+|+.|++.+|.+.-. |+..      .+.++|++|+|..|++. .+|.. +.-.. +|..|..
T Consensus       278 -------~lp~ri~~~~~L~~l~~~~nel~yi-p~~l------e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~  342 (1081)
T KOG0618|consen  278 -------ALPLRISRITSLVSLSAAYNELEYI-PPFL------EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNV  342 (1081)
T ss_pred             -------hhHHHHhhhhhHHHHHhhhhhhhhC-CCcc------cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhh
Confidence                   3444455555566666666655532 2221      22455666666666665 33332 22222 2555555


Q ss_pred             CCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchh
Q 041782          507 GNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKY  586 (821)
Q Consensus       507 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~  586 (821)
                      +.|++.......=..++.|+.|++.+|.++...-..+  ..+++|+.|+|++|++. ++|...+..|..           
T Consensus       343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~kle~-----------  408 (1081)
T KOG0618|consen  343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRKLEE-----------  408 (1081)
T ss_pred             hhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccc-cCCHHHHhchHH-----------
Confidence            5555554421111134556666666666654433333  34566666666666664 566554433322           


Q ss_pred             cccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeC
Q 041782          587 MQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNL  666 (821)
Q Consensus       587 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L  666 (821)
                                                                        |+.|+||+|+++ .+|..+.++..|++|..
T Consensus       409 --------------------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  409 --------------------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             --------------------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence                                                              444555555555 45555555555555555


Q ss_pred             CCcccCcchhhhhcCccCCCeEeCCCCcccccC-CCCccccCCccEEEcccCc
Q 041782          667 SGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI-PRQLAELTSLAVFDVSDNN  718 (821)
Q Consensus       667 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~  718 (821)
                      .+|++. ..| .+.++++|+.+|+|.|+|+... |.... -++|++||+++|.
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            555555 444 4555555555555555554332 21111 1455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.1e-34  Score=297.47  Aligned_cols=372  Identities=29%  Similarity=0.430  Sum_probs=303.3

Q ss_pred             CCEEEEEcCCCCCcc-cccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYG-SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS  165 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~  165 (821)
                      .-|+.+|++++.++| .+|.  ....+++++.|.|....+.  .+|++             ++.+.+|++|.+++|++..
T Consensus         7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~--~vPeE-------------L~~lqkLEHLs~~HN~L~~   69 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLE--QVPEE-------------LSRLQKLEHLSMAHNQLIS   69 (1255)
T ss_pred             ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhhh--hChHH-------------HHHHhhhhhhhhhhhhhHh
Confidence            458899999999985 5555  8889999999999888874  58888             8889999999999999876


Q ss_pred             CCCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcc
Q 041782          166 PHSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS  244 (821)
Q Consensus       166 ~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  244 (821)
                      ..    ..++.++.|+.+++..|++.. -+|..+.++..|..||||+|+++ ..|..+..-+++-+|+|++|+|..+...
T Consensus        70 vh----GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~  144 (1255)
T KOG0444|consen   70 VH----GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS  144 (1255)
T ss_pred             hh----hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch
Confidence            54    678899999999999998853 57888999999999999999998 7899999999999999999999854445


Q ss_pred             ccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhcc
Q 041782          245 QIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRL  324 (821)
Q Consensus       245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  324 (821)
                      -|-+++.|-.|||++|++. .+|+.+..+.+|+.|+|++|.+.- ... ..+..+++|+.|.+++.+-+           
T Consensus       145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQL-rQLPsmtsL~vLhms~TqRT-----------  210 (1255)
T KOG0444|consen  145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQL-RQLPSMTSLSVLHMSNTQRT-----------  210 (1255)
T ss_pred             HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHH-hcCccchhhhhhhcccccch-----------
Confidence            5678999999999999998 778889999999999999998752 122 22555666777777765432           


Q ss_pred             CCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccE
Q 041782          325 QNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT  404 (821)
Q Consensus       325 ~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  404 (821)
                                   +..+|..+..+.+|..+|++.|.+. .+|..+.++  ++|+.|+|++|+++.....  .+.+.+|++
T Consensus       211 -------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l--~~LrrLNLS~N~iteL~~~--~~~W~~lEt  272 (1255)
T KOG0444|consen  211 -------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL--RNLRRLNLSGNKITELNMT--EGEWENLET  272 (1255)
T ss_pred             -------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh--hhhheeccCcCceeeeecc--HHHHhhhhh
Confidence                         1356677778888888888888886 678888887  7888888888888876553  566788999


Q ss_pred             EEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCccc-CCccccCcccccCCCcccEEecc
Q 041782          405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV-LPQCLSNSKIFKNATNLKMIDLS  483 (821)
Q Consensus       405 L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~~~~~~~l~~L~~L~Ls  483 (821)
                      |+++.|+++                      .+|..++++++|+.|.+.+|+++-. +|..++      .+.+|+.+..+
T Consensus       273 LNlSrNQLt----------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aa  324 (1255)
T KOG0444|consen  273 LNLSRNQLT----------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAA  324 (1255)
T ss_pred             hccccchhc----------------------cchHHHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhh
Confidence            999988887                      6788899999999999999987643 566554      47888999999


Q ss_pred             CccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCC
Q 041782          484 HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEP  542 (821)
Q Consensus       484 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  542 (821)
                      +|.+. ..|+.+..|..|+.|.|+.|++... |+.+.-++.|+.||+..|.-.--.|.+
T Consensus       325 nN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  325 NNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKP  381 (1255)
T ss_pred             ccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCccCCCCc
Confidence            99887 8899999999999999999998765 888888999999999998755444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-32  Score=286.64  Aligned_cols=364  Identities=28%  Similarity=0.407  Sum_probs=214.9

Q ss_pred             CCCCEEEccCCcCC-CCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeec
Q 041782          202 TQLTYINFDLNQLT-GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD  280 (821)
Q Consensus       202 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  280 (821)
                      +-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            33445566666666 355666666666666666666555 45666666666666666666555 3334455555555555


Q ss_pred             cccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCC
Q 041782          281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANK  360 (821)
Q Consensus       281 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~  360 (821)
                      +..|++...                                                  .+|..+..+..|+.|||++|+
T Consensus        85 ~R~N~LKns--------------------------------------------------GiP~diF~l~dLt~lDLShNq  114 (1255)
T KOG0444|consen   85 VRDNNLKNS--------------------------------------------------GIPTDIFRLKDLTILDLSHNQ  114 (1255)
T ss_pred             hhccccccC--------------------------------------------------CCCchhcccccceeeecchhh
Confidence            555555422                                                  122233344444455555554


Q ss_pred             CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782          361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW  440 (821)
Q Consensus       361 l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~  440 (821)
                      +. +.|..+...  .++-.|+|++|+|..++.. .+.+++.|-.|||++|++.                      .+|+.
T Consensus       115 L~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn~-lfinLtDLLfLDLS~NrLe----------------------~LPPQ  168 (1255)
T KOG0444|consen  115 LR-EVPTNLEYA--KNSIVLNLSYNNIETIPNS-LFINLTDLLFLDLSNNRLE----------------------MLPPQ  168 (1255)
T ss_pred             hh-hcchhhhhh--cCcEEEEcccCccccCCch-HHHhhHhHhhhccccchhh----------------------hcCHH
Confidence            43 344444444  4555556666655555443 3445566666777777665                      45666


Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccc-ccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ-GRIPRSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      +..+..|++|+|++|.+...      ....+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.. .|+.+
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hf------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl  241 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHF------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL  241 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHH------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH
Confidence            77777888888888876533      2223344677888888876532 4578888888888888888888865 48888


Q ss_pred             CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccccc
Q 041782          520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYIL  599 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~  599 (821)
                      .++++|+.|+|++|+++.. ...  .....+|++|++|+|+++ .+|.. ...++.                        
T Consensus       242 y~l~~LrrLNLS~N~iteL-~~~--~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~k------------------------  292 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITEL-NMT--EGEWENLETLNLSRNQLT-VLPDA-VCKLTK------------------------  292 (1255)
T ss_pred             hhhhhhheeccCcCceeee-ecc--HHHHhhhhhhccccchhc-cchHH-HhhhHH------------------------
Confidence            8888888888888888732 111  244678888888888887 67754 233333                        


Q ss_pred             CCccccccccccceeeeeeEEEEecceeeecccccccccEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhh
Q 041782          600 PSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSS  678 (821)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~  678 (821)
                                                           |+.|.+.+|+++ .-||..++.|.+|+++..++|.+. ..|+.
T Consensus       293 -------------------------------------L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg  334 (1255)
T KOG0444|consen  293 -------------------------------------LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG  334 (1255)
T ss_pred             -------------------------------------HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence                                                 333444444433 234555555555555555555554 45555


Q ss_pred             hcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCc
Q 041782          679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNN  718 (821)
Q Consensus       679 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  718 (821)
                      +..+..|+.|.|++|++. .+|+.+.-|+-|+.||+..|+
T Consensus       335 lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            555555555555555554 345555555555555555553

>PLN03210 Resistant to P

Probab=99.89  E-value=4.4e-22  Score=244.59  Aligned_cols=252  Identities=21%  Similarity=0.215  Sum_probs=110.6

Q ss_pred             CccccCCCC-CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc-cceecccc
Q 041782          242 LPSQIGSLT-QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-LSLITRNT  319 (821)
Q Consensus       242 ~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~  319 (821)
                      +|..|..++ +|+.|++.++.+. .+|..| ...+|++|++.+|++.. ++  ..+..+++|+.|+++++. +..++.  
T Consensus       580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~--~~~~~l~~Lk~L~Ls~~~~l~~ip~--  652 (1153)
T PLN03210        580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LW--DGVHSLTGLRNIDLRGSKNLKEIPD--  652 (1153)
T ss_pred             cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cc--cccccCCCCCEEECCCCCCcCcCCc--
Confidence            344444332 3555555555444 344443 34455555555554432 11  113444555555554432 221111  


Q ss_pred             chhccCCCeeEEecCCCCC-chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccc
Q 041782          320 VNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL  398 (821)
Q Consensus       320 ~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  398 (821)
                        ...+++|+.|++++|.. ..+|..+..+++|+.|++++|...+.+|..+ ++  ++|+.|++++|......+.    .
T Consensus       653 --ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l--~sL~~L~Lsgc~~L~~~p~----~  723 (1153)
T PLN03210        653 --LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL--KSLYRLNLSGCSRLKSFPD----I  723 (1153)
T ss_pred             --cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC--CCCCEEeCCCCCCcccccc----c
Confidence              11234444444444432 4566666777777777777765545555433 33  4555666555543222211    1


Q ss_pred             cCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc--ccccCCCc
Q 041782          399 WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS--KIFKNATN  476 (821)
Q Consensus       399 ~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~--~~~~~l~~  476 (821)
                      ..+|++|++++|.+.                      .+|..+ .+++|++|++.++..... +..+...  ..+..+++
T Consensus       724 ~~nL~~L~L~~n~i~----------------------~lP~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        724 STNISWLDLDETAIE----------------------EFPSNL-RLENLDELILCEMKSEKL-WERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             cCCcCeeecCCCccc----------------------cccccc-cccccccccccccchhhc-cccccccchhhhhcccc
Confidence            234444444444432                      233322 355666666655332110 0000000  00111344


Q ss_pred             ccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCc
Q 041782          477 LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR  534 (821)
Q Consensus       477 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~  534 (821)
                      |+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            5555555554444455555555555555555543333333332 34445555555443

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-25  Score=223.91  Aligned_cols=212  Identities=27%  Similarity=0.290  Sum_probs=122.3

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      .|..+++|+.|++++|+++++-+.      .|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|..|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhh------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            467777777777777777766443      34556777777777777765555667777777777777777777777777


Q ss_pred             CCCCCCCEEEccCCcCcccCCC--------------CCccCCCCCCcEEEccCCcCcc---CCChhhhhccchhhhhccc
Q 041782          520 GTLPELKVLMLQFNRFHGEIGE--------------PDTGFVFPKLRIIDLSHNRFSG---KLPSKYFQCWNAIKVANKS  582 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~~~~--------------~~~~~~l~~L~~L~Ls~N~l~g---~ip~~~~~~l~~l~~l~~~  582 (821)
                      ..+.+|.+|+|-.|.+.-.--.              ...+.....++.++++.+.+..   .-|++ ..+.+        
T Consensus       343 ~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee-~~~~~--------  413 (498)
T KOG4237|consen  343 QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE-LGCLT--------  413 (498)
T ss_pred             cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc-cCCCC--------
Confidence            7777777777777765311000              0000112233334443333210   00000 00000        


Q ss_pred             cchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccE-EEcccccccCccccccccCCCC
Q 041782          583 QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTG-IILSNNKLIGKIPTSISELKGL  661 (821)
Q Consensus       583 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~Ls~N~l~~~~p~~l~~L~~L  661 (821)
                                                                  ...-+..++-+.+ ...|+..+. .+|..+.  ...
T Consensus       414 --------------------------------------------s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~  446 (498)
T KOG4237|consen  414 --------------------------------------------SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDV  446 (498)
T ss_pred             --------------------------------------------CCCCCCCcchhhhhHhhcccchh-hcCCCCC--chh
Confidence                                                        0000000111211 223333333 4444433  345


Q ss_pred             CEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccC
Q 041782          662 NCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDN  717 (821)
Q Consensus       662 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  717 (821)
                      .+|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.++++|.+|-+|||
T Consensus       447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            56888888888 66665  56777 8888888888777778888888888888886

>PLN03210 Resistant to P

Probab=99.89  E-value=8.6e-22  Score=242.03  Aligned_cols=203  Identities=21%  Similarity=0.207  Sum_probs=125.8

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCC-----CCCCccccccCCCcccCCCCCCC-CCCCEEEcCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNY-----SKIPSEIMNLSSFSGQVPSLGNL-TKLKCLELSQ  160 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~~~~l~~~~~~ip~l~~l-~~L~~L~Ls~  160 (821)
                      .+|..+.+.-..+...-....++..+++|+.|.+..+....     ..+|..             +..+ .+|+.|++.+
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-------------~~~lp~~Lr~L~~~~  598 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-------------FDYLPPKLRLLRWDK  598 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcc-------------hhhcCcccEEEEecC
Confidence            45666665443332211122367888999999887664321     113333             4444 3588888888


Q ss_pred             CCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC
Q 041782          161 NNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG  240 (821)
Q Consensus       161 n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  240 (821)
                      +.+...+.    .+ ...+|++|++.+|.+. .++..+..+++|++|+|+++.....+|. ++.+++|++|++++|....
T Consensus       599 ~~l~~lP~----~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        599 YPLRCMPS----NF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             CCCCCCCC----cC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc
Confidence            77654432    22 3567778888777763 5666677777888888877654445553 6677777888877776555


Q ss_pred             CCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCccccee
Q 041782          241 YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI  315 (821)
Q Consensus       241 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  315 (821)
                      .+|..+.++++|++|++++|.....+|..+ ++++|++|++++|...+.+|.     ...+|++|++++|.+..+
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~n~i~~l  740 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDETAIEEF  740 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCCCccccc
Confidence            677777777777777777765444566554 677777777777754333221     134566666666655443

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=6.9e-24  Score=211.24  Aligned_cols=415  Identities=20%  Similarity=0.158  Sum_probs=232.9

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCC
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~  229 (821)
                      ..-..++|..|.|+.+++   ..|+.+++||.|||++|+|+..-|++|..+++|..|-+.+ |+|+....+.|+++..|+
T Consensus        67 ~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             CcceEEEeccCCcccCCh---hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            356678888888887777   5556667777777777777666666777766666655544 666655555666666777


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782          230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA  309 (821)
Q Consensus       230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  309 (821)
                      .|.+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+..       .-+++.+.... ..
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-------dCnL~wla~~~-a~  215 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-------DCNLPWLADDL-AM  215 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-------ccccchhhhHH-hh
Confidence            77666666666666666666666666666666663322356666666666666655321       11111111000 00


Q ss_pred             cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782          310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                      +                               |..++......-..+.+.++...-+..+.... ..+..--.+.+...+
T Consensus       216 ~-------------------------------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~  263 (498)
T KOG4237|consen  216 N-------------------------------PIETSGARCVSPYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDS  263 (498)
T ss_pred             c-------------------------------hhhcccceecchHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCC
Confidence            0                               01111111111122222222211111111000 011111112222333


Q ss_pred             CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782          390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK  469 (821)
Q Consensus       390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~  469 (821)
                      ..|...+..+++|++|++++|++++                     .-+.+|.+...+++|.|..|++..+      ...
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~---------------------i~~~aFe~~a~l~eL~L~~N~l~~v------~~~  316 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITR---------------------IEDGAFEGAAELQELYLTRNKLEFV------SSG  316 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccch---------------------hhhhhhcchhhhhhhhcCcchHHHH------HHH
Confidence            3333344555666666666655543                     4456777788888888888888755      334


Q ss_pred             cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC-----CchhhC-----------CCCCCCEEEccCC
Q 041782          470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI-----FPSWLG-----------TLPELKVLMLQFN  533 (821)
Q Consensus       470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~-----------~l~~L~~L~L~~N  533 (821)
                      +|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|.+.--     ..+|+.           .-..++.+.+++.
T Consensus       317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv  396 (498)
T KOG4237|consen  317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV  396 (498)
T ss_pred             hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhc
Confidence            677788888899999998888888888888888888888766421     112222           1224556666665


Q ss_pred             cCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782          534 RFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY  613 (821)
Q Consensus       534 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  613 (821)
                      .+...     .+.   .=++.   ++.-++..|+. ..++.....  .                                
T Consensus       397 ~~~~~-----~c~---~~ee~---~~~~s~~cP~~-c~c~~tVvR--c--------------------------------  430 (498)
T KOG4237|consen  397 AFGDF-----RCG---GPEEL---GCLTSSPCPPP-CTCLDTVVR--C--------------------------------  430 (498)
T ss_pred             ccccc-----ccC---Ccccc---CCCCCCCCCCC-cchhhhhHh--h--------------------------------
Confidence            54311     000   00010   12222334433 111111100  0                                


Q ss_pred             eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782          614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN  693 (821)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  693 (821)
                              +.+.......+++...++|++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|.++++|.+|.||+|
T Consensus       431 --------Snk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  431 --------SNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             --------cccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence                    000000111122334678999999998 77877  67888 8999999999777778999999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=5.7e-21  Score=217.25  Aligned_cols=222  Identities=28%  Similarity=0.354  Sum_probs=127.7

Q ss_pred             CCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE
Q 041782          400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM  479 (821)
Q Consensus       400 ~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~  479 (821)
                      ++|++|++++|+++. +|..+.+++.|++++|.+. .+|..   ..+|+.|++++|+++. +|..         +++|+.
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---------p~~L~~  306 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---------PPGLQE  306 (788)
T ss_pred             CCCcEEEecCCccCc-ccCcccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-cccc---------ccccce
Confidence            344444444444442 2222334444444444433 22221   2346666677766653 2321         355677


Q ss_pred             EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCC
Q 041782          480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN  559 (821)
Q Consensus       480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  559 (821)
                      |++++|++++ +|..   ..+|+.|++++|+++++ |..   ..+|+.|+|++|++++ +|..     .++|+.|++++|
T Consensus       307 LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N  372 (788)
T PRK15387        307 LSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNN  372 (788)
T ss_pred             eECCCCcccc-CCCC---cccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcc
Confidence            7777776663 3331   23466666777766653 321   2356777777777663 3321     345666677777


Q ss_pred             cCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccE
Q 041782          560 RFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTG  639 (821)
Q Consensus       560 ~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  639 (821)
                      +++ .+|..                                                                 ...|+.
T Consensus       373 ~L~-~LP~l-----------------------------------------------------------------~~~L~~  386 (788)
T PRK15387        373 RLT-SLPAL-----------------------------------------------------------------PSGLKE  386 (788)
T ss_pred             ccc-cCccc-----------------------------------------------------------------ccccce
Confidence            665 34421                                                                 112667


Q ss_pred             EEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782          640 IILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL  719 (821)
Q Consensus       640 L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  719 (821)
                      |++++|++++ +|..   .++|+.|++++|+++ .+|..+   ..|+.|++++|+|+ .+|..+.++++|+.|++++|+|
T Consensus       387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             EEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            7778887773 5543   256777888888877 356432   45677888888877 5777777788888888888888


Q ss_pred             cccCCC
Q 041782          720 TGQIPQ  725 (821)
Q Consensus       720 ~g~iP~  725 (821)
                      +|.+|.
T Consensus       458 s~~~~~  463 (788)
T PRK15387        458 SERTLQ  463 (788)
T ss_pred             CchHHH
Confidence            876654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2e-20  Score=212.79  Aligned_cols=264  Identities=23%  Similarity=0.260  Sum_probs=127.2

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782          179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS  258 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  258 (821)
                      .-..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|.   ..++|++|++++|+++. +|..   .++|++|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            3455666666664 4565554  35666666666666 3443   23566666666666663 3432   3456666666


Q ss_pred             CccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782          259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL  338 (821)
Q Consensus       259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l  338 (821)
                      +|.+. .+|..   .++|+.|++++|+++. +|.     ..++|+.|++++|.++.++.      ...+|+.|++++|.+
T Consensus       271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~-----~p~~L~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L  334 (788)
T PRK15387        271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV-----LPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQL  334 (788)
T ss_pred             CCchh-hhhhc---hhhcCEEECcCCcccc-ccc-----cccccceeECCCCccccCCC------CcccccccccccCcc
Confidence            66655 33332   2345566666666552 221     13456666666665554432      122344444444444


Q ss_pred             chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782          339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI  418 (821)
Q Consensus       339 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  418 (821)
                      ..+|..   ..+|+.|++++|++.+ +|...     .+|+.|++++|.++.++..     ..+|+.|++++|+++     
T Consensus       335 ~~LP~l---p~~Lq~LdLS~N~Ls~-LP~lp-----~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt-----  395 (788)
T PRK15387        335 TSLPTL---PSGLQELSVSDNQLAS-LPTLP-----SELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLT-----  395 (788)
T ss_pred             cccccc---ccccceEecCCCccCC-CCCCC-----cccceehhhccccccCccc-----ccccceEEecCCccc-----
Confidence            444321   1234444444444432 22110     2333344444443332210     122333333333332     


Q ss_pred             CCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782          419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC  498 (821)
Q Consensus       419 ~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  498 (821)
                                      + +|..   .++|+.|++++|++++ +|..         ..+|+.|++++|+++ .+|..+..+
T Consensus       396 ----------------~-LP~l---~s~L~~LdLS~N~Lss-IP~l---------~~~L~~L~Ls~NqLt-~LP~sl~~L  444 (788)
T PRK15387        396 ----------------S-LPVL---PSELKELMVSGNRLTS-LPML---------PSGLLSLSVYRNQLT-RLPESLIHL  444 (788)
T ss_pred             ----------------C-CCCc---ccCCCEEEccCCcCCC-CCcc---------hhhhhhhhhccCccc-ccChHHhhc
Confidence                            1 2221   1346666666666653 3421         234556666666665 456666666


Q ss_pred             CCCCEEeCCCCcCCcCCchhh
Q 041782          499 TMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       499 ~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      ++|+.|+|++|++++..+..+
T Consensus       445 ~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        445 SSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCeEECCCCCCCchHHHHH
Confidence            666666666666665555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.6e-19  Score=207.15  Aligned_cols=250  Identities=23%  Similarity=0.302  Sum_probs=139.8

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +...|+++++.++.. |   ..+  .+.|++|++++|++. .+|..+.  ++|++|++++|.++ .+|..+.  .+|+.|
T Consensus       179 ~~~~L~L~~~~LtsL-P---~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L  246 (754)
T PRK15370        179 NKTELRLKILGLTTI-P---ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEM  246 (754)
T ss_pred             CceEEEeCCCCcCcC-C---ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEE
Confidence            445566666655543 2   111  135666666666554 3444432  35666666666665 3444432  356666


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      ++++|.+. .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.|++++|++++ +|. . +  .++|+.|++++|.
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~-~-l--p~sL~~L~Ls~N~  315 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA-H-L--PSGITHLNVQSNS  315 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccc-c-c--hhhHHHHHhcCCc
Confidence            66666665 4454443  35666666666666 3454443  356666666666653 221 1 1  1356666666666


Q ss_pred             cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782          312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD  391 (821)
Q Consensus       312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~  391 (821)
                      ++.++..     ..++|+.|++++|.+..+|..+.  ++|+.|++++|++. .+|..+.    ++|+.|++++|.++.++
T Consensus       316 Lt~LP~~-----l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp----~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        316 LTALPET-----LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP----PTITTLDVSRNALTNLP  383 (754)
T ss_pred             cccCCcc-----ccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc----CCcCEEECCCCcCCCCC
Confidence            6654332     13567777777777766766553  68888999988886 4565442    56778888887777654


Q ss_pred             CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCc
Q 041782          392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS  458 (821)
Q Consensus       392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~  458 (821)
                      +.  .  ...|+.|++++|++.. +|.                 .+|.....++.+..|++.+|.++
T Consensus       384 ~~--l--~~sL~~LdLs~N~L~~-LP~-----------------sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        384 EN--L--PAALQIMQASRNNLVR-LPE-----------------SLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             Hh--H--HHHHHHHhhccCCccc-Cch-----------------hHHHHhhcCCCccEEEeeCCCcc
Confidence            32  1  1245566666665542 111                 12233334456666666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=2.9e-19  Score=204.94  Aligned_cols=181  Identities=25%  Similarity=0.390  Sum_probs=91.3

Q ss_pred             CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE
Q 041782          327 KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD  406 (821)
Q Consensus       327 ~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  406 (821)
                      +...|+++++.+..+|..+.  +.|+.|++++|+++ .+|..+.    .+|++|++++|.++.++..    ...+|+.|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~----l~~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPAT----LPDTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChh----hhccccEEE
Confidence            34566666666666665432  45666666666665 3343322    3556666666655544321    113455555


Q ss_pred             eccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc
Q 041782          407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL  486 (821)
Q Consensus       407 L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~  486 (821)
                      +++|.+.                      .+|..+.  .+|+.|++++|+++ .+|..+        .++|+.|++++|+
T Consensus       248 Ls~N~L~----------------------~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l--------~~sL~~L~Ls~N~  294 (754)
T PRK15370        248 LSINRIT----------------------ELPERLP--SALQSLDLFHNKIS-CLPENL--------PEELRYLSVYDNS  294 (754)
T ss_pred             CcCCccC----------------------cCChhHh--CCCCEEECcCCccC-cccccc--------CCCCcEEECCCCc
Confidence            5555443                      2333332  35666666666665 344332        1356666666666


Q ss_pred             ccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782          487 LQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS  562 (821)
Q Consensus       487 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  562 (821)
                      ++ .+|..+.  ++|+.|++++|+++.. |..+  .++|+.|++++|.+++ +|..+    .++|+.|++++|+++
T Consensus       295 Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        295 IR-TLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASL----PPELQVLDVSKNQIT  359 (754)
T ss_pred             cc-cCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhh----cCcccEEECCCCCCC
Confidence            65 2333322  3455666666666543 2222  2455666666665553 33322    345666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=7e-19  Score=188.31  Aligned_cols=73  Identities=29%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccc----cCchhhcCCCCCCEEeCCCCcCCcC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG----RIPRSLANCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~  514 (821)
                      +..+++|++|++++|.+++.....+... .....+.|++|++++|.+++    .+...+..+++|+++++++|.++..
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASA-LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHH-HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            3444556666666655553211111100 00012455555665555541    1223344445566666666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.3e-18  Score=186.36  Aligned_cols=118  Identities=26%  Similarity=0.248  Sum_probs=72.5

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc-----CCCCCCEEeCCCCcCCcC
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-----NCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~  514 (821)
                      .+..+++|++|++++|.+.+.....+.  ..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.+++.
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~--~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~  265 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD  265 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHH--HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence            344456788888888877644322221  1244567888888888888753333222     237888888888888632


Q ss_pred             ----CchhhCCCCCCCEEEccCCcCccc----CCCCCccCCC-CCCcEEEccCCcC
Q 041782          515 ----FPSWLGTLPELKVLMLQFNRFHGE----IGEPDTGFVF-PKLRIIDLSHNRF  561 (821)
Q Consensus       515 ----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l-~~L~~L~Ls~N~l  561 (821)
                          +...+..+++|+++++++|.+...    +....  ... +.|+++++.+|++
T Consensus       266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         266 GAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL--LEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH--hhcCCchhhcccCCCCC
Confidence                234455667888888888887633    11111  112 5777777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=5.8e-16  Score=177.67  Aligned_cols=117  Identities=44%  Similarity=0.756  Sum_probs=105.5

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      ++.|+|++|.+.|.+|..++++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCC--CCCCCCCCccCCCCCCCCCCCCCCCC
Q 041782          717 NNLTGQIPQGK--QFNTFENSSFEGNPGLCGKPLSRNCE  753 (821)
Q Consensus       717 N~l~g~iP~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~  753 (821)
                      |+++|.+|...  .+.......+.||+.+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  12333456789999999977656663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=2.8e-18  Score=151.91  Aligned_cols=161  Identities=29%  Similarity=0.435  Sum_probs=98.5

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +.++.+++.|.||+|+++...|    .++.+.+|++|++++|++ .++|.+++.+++|+.|+++-|++. ..|..|+.++
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vpp----nia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPP----NIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             ccchhhhhhhhcccCceeecCC----cHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            4455555556666666654443    355566666666666655 355666666666666666666665 5666666666


Q ss_pred             CCCEEEccCCcCC-CCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782          227 RLTILSLKSNQLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL  305 (821)
Q Consensus       227 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  305 (821)
                      .|++|||.+|++. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+.. .|  ..++.+..|++|
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp--keig~lt~lrel  178 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP--KEIGDLTRLREL  178 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc--HHHHHHHHHHHH
Confidence            6666666666654 245666666666666666666666 566666666666666666666542 22  235666666666


Q ss_pred             ECCCcccceecc
Q 041782          306 FLSANNLSLITR  317 (821)
Q Consensus       306 ~L~~n~l~~~~~  317 (821)
                      ++.+|+++.+++
T Consensus       179 hiqgnrl~vlpp  190 (264)
T KOG0617|consen  179 HIQGNRLTVLPP  190 (264)
T ss_pred             hcccceeeecCh
Confidence            666666665544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.8e-17  Score=145.57  Aligned_cols=165  Identities=27%  Similarity=0.444  Sum_probs=106.5

Q ss_pred             cCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCe
Q 041782          199 MNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY  278 (821)
Q Consensus       199 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  278 (821)
                      .++.+.+.|.||+|+++ .+|..+..+.+|++|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34556666667777766 45556667777777777777766 56666777777777777777666 66777777777777


Q ss_pred             eccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEeccc
Q 041782          279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSA  358 (821)
Q Consensus       279 L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~  358 (821)
                      ||+.+|++...... +.|..++.|+.|++++|.+..++++.   ..+++|+.|.+.+|.+-++|..++.+..|++|.+.+
T Consensus       107 ldltynnl~e~~lp-gnff~m~tlralyl~dndfe~lp~dv---g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  107 LDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFEILPPDV---GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhccccccccccCC-cchhHHHHHHHHHhcCCCcccCChhh---hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence            77777766543322 34555666666666666665555443   245566666666666667777777777777777777


Q ss_pred             CCCCCCCCcchhc
Q 041782          359 NKIPGKIPGWLLN  371 (821)
Q Consensus       359 n~l~~~~p~~l~~  371 (821)
                      |+++ .+|..+++
T Consensus       183 nrl~-vlppel~~  194 (264)
T KOG0617|consen  183 NRLT-VLPPELAN  194 (264)
T ss_pred             ceee-ecChhhhh
Confidence            7776 44444443

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=4.2e-14  Score=162.45  Aligned_cols=137  Identities=31%  Similarity=0.473  Sum_probs=84.7

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCc----cccceeeCCC--C--CCEEEEEcCCCCC
Q 041782           28 HQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCC----SWDGVKCNED--T--GHVIKLNLTSSCI   99 (821)
Q Consensus        28 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c----~w~gv~C~~~--~--~~v~~L~L~~~~l   99 (821)
                      ...+.++|.+||+++|+++..+.           ..+|+.    ..||    .|.||.|...  .  .+|+.|+|+++.+
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~-----------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L  430 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL-----------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL  430 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc-----------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCc
Confidence            34567789999999999985432           247964    3442    7999999532  2  2477888888877


Q ss_pred             cccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCC
Q 041782          100 YGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTE  179 (821)
Q Consensus       100 ~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~  179 (821)
                      .|.++.  .+.++++|+.|+|++|.+.+ .+|+.             ++.+++|++|+|++|++++.+|   ..++++++
T Consensus       431 ~g~ip~--~i~~L~~L~~L~Ls~N~l~g-~iP~~-------------~~~l~~L~~LdLs~N~lsg~iP---~~l~~L~~  491 (623)
T PLN03150        431 RGFIPN--DISKLRHLQSINLSGNSIRG-NIPPS-------------LGSITSLEVLDLSYNSFNGSIP---ESLGQLTS  491 (623)
T ss_pred             cccCCH--HHhCCCCCCEEECCCCcccC-cCChH-------------HhCCCCCCEEECCCCCCCCCCc---hHHhcCCC
Confidence            777765  66666666666666666643 24444             5555666666666666655555   44444444


Q ss_pred             CCEEecCCccccccCCccc
Q 041782          180 LSWLALANINLIGEFPSWL  198 (821)
Q Consensus       180 L~~L~L~~n~~~~~~p~~l  198 (821)
                      |++|+|++|.+.+.+|..+
T Consensus       492 L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        492 LRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CCEEECcCCcccccCChHH
Confidence            4444444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.9e-12  Score=136.08  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=42.4

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhh---cCccCCCeEeCCCCc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL---GNLTVLESLDLSNNN  694 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~  694 (821)
                      |..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+   |...--++|+..-++
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            677888888888 78888888888888888888888 666554   333444677777774

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.2e-11  Score=126.43  Aligned_cols=161  Identities=31%  Similarity=0.304  Sum_probs=88.3

Q ss_pred             hcCCCCCEEEccCCcCCCCCc--cccCCCCCCCEEEccCccCCCCCC--ccccCCCCcCeeccccCCceeecccccccCC
Q 041782          223 ANLNRLTILSLKSNQLRGYLP--SQIGSLTQLTALDLSCNQFQGPVP--SSISELKRLEYLDLHSNNLSGNVYIEELLPK  298 (821)
Q Consensus       223 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~  298 (821)
                      .++.+|+...|.++.+.. .+  .....+++++.|||+.|-+..-.+  ....++++|+.|+++.|++...... ..-. 
T Consensus       118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~-  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTL-  194 (505)
T ss_pred             hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchh-
Confidence            356677777777766652 22  244556677777777765552211  2224566666666666665421111 0011 


Q ss_pred             CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCC
Q 041782          299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN  376 (821)
Q Consensus       299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~  376 (821)
                                               .++.|+.|.++.|.+  ..+-..+..+|+|+.|++..|............+  ..
T Consensus       195 -------------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~  247 (505)
T KOG3207|consen  195 -------------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QT  247 (505)
T ss_pred             -------------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hH
Confidence                                     244555556666655  3444456667888888888885222211112222  56


Q ss_pred             eeEEEcCCCCCCCCCCCccccccCCccEEEeccCccc
Q 041782          377 LQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ  413 (821)
Q Consensus       377 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  413 (821)
                      |+.|+|++|++..+......+.++.|+.|+++.+.+.
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~  284 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA  284 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcc
Confidence            7777777777776665444555566666666665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=1.6e-12  Score=136.71  Aligned_cols=195  Identities=30%  Similarity=0.459  Sum_probs=118.2

Q ss_pred             CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCC
Q 041782          444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP  523 (821)
Q Consensus       444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  523 (821)
                      +..-...|++.|++. .+|...+      .+..|+.+.+..|.+. .+|..+.++..|+.|||+.|++... |..+..++
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~------~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp  144 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEAC------AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDLP  144 (722)
T ss_pred             ccchhhhhccccccc-cCchHHH------HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcCc
Confidence            444556677777776 4454332      2456777777777776 6677777777777777777777654 44555554


Q ss_pred             CCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcc
Q 041782          524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSS  603 (821)
Q Consensus       524 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  603 (821)
                       |+.|-+++|+++ .+|+.+  +..+.|..||.+.|.+. .+|.. +..+                              
T Consensus       145 -Lkvli~sNNkl~-~lp~~i--g~~~tl~~ld~s~nei~-slpsq-l~~l------------------------------  188 (722)
T KOG0532|consen  145 -LKVLIVSNNKLT-SLPEEI--GLLPTLAHLDVSKNEIQ-SLPSQ-LGYL------------------------------  188 (722)
T ss_pred             -ceeEEEecCccc-cCCccc--ccchhHHHhhhhhhhhh-hchHH-hhhH------------------------------
Confidence             677777777766 455555  35666777777777665 45543 1111                              


Q ss_pred             ccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCcc
Q 041782          604 AYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLT  683 (821)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~  683 (821)
                                                     ..|+.|.+..|++. ..|+++..| .|..||+|+|+++ .||-.|..|+
T Consensus       189 -------------------------------~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~  234 (722)
T KOG0532|consen  189 -------------------------------TSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR  234 (722)
T ss_pred             -------------------------------HHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhh
Confidence                                           12445556666665 556666644 3556777777777 6777777777


Q ss_pred             CCCeEeCCCCcccccCCCCccc---cCCccEEEcccCc
Q 041782          684 VLESLDLSNNNLSGEIPRQLAE---LTSLAVFDVSDNN  718 (821)
Q Consensus       684 ~L~~L~Ls~N~l~~~~p~~l~~---l~~L~~L~ls~N~  718 (821)
                      .|++|-|.+|.|. ..|..+..   ..=.++|+..-++
T Consensus       235 ~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  235 HLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            7777777777776 33443322   2233555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.06  E-value=9.6e-11  Score=137.40  Aligned_cols=133  Identities=21%  Similarity=0.311  Sum_probs=82.0

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc--ccccCCccccCCCCCCEEEccCCcCCCCcchhhhc
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN--LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN  224 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~--~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  224 (821)
                      ..+....+...+-+|.+.....     -...++|++|-+.+|.  +....+..|..++.|++|||++|.--+.+|..+++
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~-----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAG-----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             ccchhheeEEEEeccchhhccC-----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence            3444556666666665543221     1234466666666665  22222233566777777777776655567777777


Q ss_pred             CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCC
Q 041782          225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN  285 (821)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  285 (821)
                      +.+|++|+++++.+. .+|..+.++++|.+|++..+.....+|.....+++|++|.+..-.
T Consensus       594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            777777777777776 667777777777777777666554555555667777777766544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.6e-10  Score=108.46  Aligned_cols=109  Identities=27%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhcc-CCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhh-hc
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIA-KQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL-AN  224 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~  224 (821)
                      +.+..++++|+|++|.|+.+     ..++ .+.+|++|++++|.+...  +.+..++.|++|++++|+|+. +.+.+ ..
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~   86 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKN   86 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH
T ss_pred             cccccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHh
Confidence            55566778888888877654     2344 456677777777776532  236667777777777777773 33333 35


Q ss_pred             CCCCCEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCC
Q 041782          225 LNRLTILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      +++|++|++++|+|...- -..+..+++|++|++.+|.++
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            677777777777765321 134455666667777666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=3.6e-10  Score=124.55  Aligned_cols=198  Identities=33%  Similarity=0.432  Sum_probs=146.8

Q ss_pred             EEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC-CCCEEEcCCCCCCCCCCC
Q 041782           91 KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT-KLKCLELSQNNFSSPHSA  169 (821)
Q Consensus        91 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~-~L~~L~Ls~n~~~~~~~~  169 (821)
                      .+++..+.+...+.   .+..++.++.|++.+|.++  ++|..             ...+. +|+.|++++|.+....  
T Consensus        97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~--~i~~~-------------~~~~~~nL~~L~l~~N~i~~l~--  156 (394)
T COG4886          97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNIT--DIPPL-------------IGLLKSNLKELDLSDNKIESLP--  156 (394)
T ss_pred             eeeccccccccCch---hhhcccceeEEecCCcccc--cCccc-------------cccchhhcccccccccchhhhh--
Confidence            46666666544332   4566688888888888885  35554             45553 8899999998887542  


Q ss_pred             CchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCC
Q 041782          170 SFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSL  249 (821)
Q Consensus       170 ~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  249 (821)
                        ..+..+++|+.|++++|++. .+|...+.+++|+.|++++|+++ .+|..+.....|++|.+++|.+. ..+..+.++
T Consensus       157 --~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~  231 (394)
T COG4886         157 --SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL  231 (394)
T ss_pred             --hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence              34678888999999988885 55665668888888999999888 66766666677888888888644 456677888


Q ss_pred             CCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccc
Q 041782          250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRN  318 (821)
Q Consensus       250 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  318 (821)
                      +++..+.+.+|++. ..+..++.+++++.|++++|.++.. +   .+..+.+++.|++++|.+....+.
T Consensus       232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~---~~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-S---SLGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccccccCCceee-eccchhccccccceecccccccccc-c---cccccCccCEEeccCccccccchh
Confidence            88888888888877 3466778888888999988888742 2   277888888888888887765443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=5.4e-10  Score=123.14  Aligned_cols=149  Identities=34%  Similarity=0.427  Sum_probs=92.7

Q ss_pred             EEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCC-CCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782          155 CLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT-QLTYINFDLNQLTGPIPNWLANLNRLTILSL  233 (821)
Q Consensus       155 ~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  233 (821)
                      .++++.|.+....    ..+..++.++.|++.+|.+. .+|.....++ +|++|++++|.+. .+|..+..+++|+.|++
T Consensus        97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeeccccccccCc----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence            5666666663322    23445566777777777664 4555555553 7777777777776 55556677777777777


Q ss_pred             cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccc
Q 041782          234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                      ++|+++ .+|...+..++|+.|++++|++. .+|........|++|.+++|.+....   ..+.++.++..+.+.+|++.
T Consensus       171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCceee
Confidence            777777 44554556777777777777777 55555555566777777777433221   22555666666666665554


Q ss_pred             e
Q 041782          314 L  314 (821)
Q Consensus       314 ~  314 (821)
                      .
T Consensus       246 ~  246 (394)
T COG4886         246 D  246 (394)
T ss_pred             e
Confidence            3

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.02  E-value=1.7e-10  Score=108.35  Aligned_cols=109  Identities=31%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             CCCCCCEEEccCCcCCCCcchhhh-cCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccc-cCCCCcC
Q 041782          200 NLTQLTYINFDLNQLTGPIPNWLA-NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLE  277 (821)
Q Consensus       200 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~  277 (821)
                      +..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++..  +.+..+++|++|++++|.++. +.+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            44456666666666652 2 2343 355666666666666633  345666667777777776663 33333 3466677


Q ss_pred             eeccccCCceeecccccccCCCCCCCeEECCCcccce
Q 041782          278 YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL  314 (821)
Q Consensus       278 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  314 (821)
                      +|++++|++...-.. ..+..+++|+.|++.+|+++.
T Consensus        92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred             EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc
Confidence            777777766543222 346667777777777777654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4.9e-11  Score=121.97  Aligned_cols=212  Identities=23%  Similarity=0.208  Sum_probs=100.6

Q ss_pred             CCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC---chhhhhhcCCCccceEecccCCCCCCCCcchhccC
Q 041782          297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL---KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVT  373 (821)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~  373 (821)
                      .++++|+++.|.+..+....... ....+++++.|+++.|-+   ..+......+++|+.|+++.|++.           
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-----------  185 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-----------  185 (505)
T ss_pred             hhHHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-----------
Confidence            35667777777777665444321 123455555555555544   222333444555555555555443           


Q ss_pred             CCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcC
Q 041782          374 TGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLS  453 (821)
Q Consensus       374 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls  453 (821)
                                     ..........++.|+.|.|+.|.++..                    .+...+..+|+|+.|+++
T Consensus       186 ---------------~~~~s~~~~~l~~lK~L~l~~CGls~k--------------------~V~~~~~~fPsl~~L~L~  230 (505)
T KOG3207|consen  186 ---------------NFISSNTTLLLSHLKQLVLNSCGLSWK--------------------DVQWILLTFPSLEVLYLE  230 (505)
T ss_pred             ---------------CCccccchhhhhhhheEEeccCCCCHH--------------------HHHHHHHhCCcHHHhhhh
Confidence                           222221222344555555555555410                    112223345666666666


Q ss_pred             CCcCcccCCccccCcccccCCCcccEEeccCccccccC-chhhcCCCCCCEEeCCCCcCCcC-Cchh-----hCCCCCCC
Q 041782          454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLGNNQIADI-FPSW-----LGTLPELK  526 (821)
Q Consensus       454 ~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~  526 (821)
                      .|.....      ......-+..|+.|||++|.+.... -...+.++.|+.|+++.|.+..+ .|+.     ...+++|+
T Consensus       231 ~N~~~~~------~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  231 ANEIILI------KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             cccccce------ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            6631111      0111223455666666666654221 12345566666666666666544 2222     23456666


Q ss_pred             EEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782          527 VLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS  562 (821)
Q Consensus       527 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  562 (821)
                      +|++..|++. .++.......+++|+.|.+..|.++
T Consensus       305 ~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  305 YLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             eeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            6666666653 1122111233455555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=3.8e-11  Score=119.57  Aligned_cols=120  Identities=23%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCch-------------hhcCCCCCCEEeCC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR-------------SLANCTMLEFLDLG  507 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-------------~~~~l~~L~~L~L~  507 (821)
                      +..+++|++||||+|.+.-..+..+..  .+..+..|++|.|.+|.+.-.--.             ....-+.|+++..+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~--ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEE--LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHH--HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            344556666666666665444443322  234466666666666665421111             12234567777777


Q ss_pred             CCcCCcCC----chhhCCCCCCCEEEccCCcCcccCC--CCCccCCCCCCcEEEccCCcCc
Q 041782          508 NNQIADIF----PSWLGTLPELKVLMLQFNRFHGEIG--EPDTGFVFPKLRIIDLSHNRFS  562 (821)
Q Consensus       508 ~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~  562 (821)
                      .|++..-.    ...|...+.|+.+.+..|.|...-.  .......+++|+.|||.+|-|+
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            77765442    2334556677777777776641110  0112245677777777777665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=3.9e-11  Score=119.55  Aligned_cols=95  Identities=28%  Similarity=0.336  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCCCCcc----cccCCcccccCCCCCEEeCCCCCCCC---CCCCccccccCCCcccCCCCCCCCCCCEEEcC
Q 041782           87 GHVIKLNLTSSCIYG----SINSSSSLFHLRHLEWLSLADNNFNY---SKIPSEIMNLSSFSGQVPSLGNLTKLKCLELS  159 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g----~~~~~~~l~~l~~L~~L~Ls~n~~~~---~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls  159 (821)
                      ..++.|+|+++.+.-    .+..  .+.+.++|+.-++|+- ++|   .++|+.+..|+      +.+..+++|++||||
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~------~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDM-FTGRLKDEIPEALKMLS------KALLGCPKLQKLDLS  100 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHH------HHHhcCCceeEeecc
Confidence            467888888887642    2323  5777788888888754 222   22444322221      114556688888888


Q ss_pred             CCCCCCCCCCCchh-ccCCCCCCEEecCCccc
Q 041782          160 QNNFSSPHSASFSW-IAKQTELSWLALANINL  190 (821)
Q Consensus       160 ~n~~~~~~~~~~~~-l~~l~~L~~L~L~~n~~  190 (821)
                      .|.|.-..+..|.. +..+..|++|.|.+|.+
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            88877554433322 34566677777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.4e-10  Score=112.61  Aligned_cols=116  Identities=27%  Similarity=0.250  Sum_probs=81.9

Q ss_pred             CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782          436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF  515 (821)
Q Consensus       436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  515 (821)
                      .+.+++.-.|.++.|++++|.+..+        ..+..+++|+.|||++|.++ .+..+-..+.+.++|.|++|.|... 
T Consensus       298 ~iDESvKL~Pkir~L~lS~N~i~~v--------~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L-  367 (490)
T KOG1259|consen  298 QIDESVKLAPKLRRLILSQNRIRTV--------QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL-  367 (490)
T ss_pred             hhhhhhhhccceeEEeccccceeee--------hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh-
Confidence            3445556677888888888887644        12445778888888888877 4555666777888888888887665 


Q ss_pred             chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782          516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG  563 (821)
Q Consensus       516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g  563 (821)
                       ..++++-+|..||+++|+|... ......+.+|-|+.+.|.+|++.+
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie~l-deV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIEEL-DEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             -hhhHhhhhheeccccccchhhH-HHhcccccccHHHHHhhcCCCccc
Confidence             4577778888888888887632 222233668888888888888874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=1.5e-09  Score=127.38  Aligned_cols=153  Identities=22%  Similarity=0.326  Sum_probs=111.6

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCC--CCCCCCCCchhccCCCCCCEEecC
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN--FSSPHSASFSWIAKQTELSWLALA  186 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~l~~L~~L~L~  186 (821)
                      .......|...+-+|.+..  ++..              ...++|++|-+..|.  +.....   ..|..++.|++|||+
T Consensus       519 ~~~~~~~rr~s~~~~~~~~--~~~~--------------~~~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs  579 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEH--IAGS--------------SENPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLS  579 (889)
T ss_pred             ccchhheeEEEEeccchhh--ccCC--------------CCCCccceEEEeecchhhhhcCH---HHHhhCcceEEEECC
Confidence            3444667777777776632  3322              345578999888886  444433   557889999999999


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCC--C
Q 041782          187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ--G  264 (821)
Q Consensus       187 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~  264 (821)
                      +|.-.+.+|..++++-+||+|+++++.+. .+|..++++..|.+|++..+.....+|.....+++|++|.+......  .
T Consensus       580 ~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~  658 (889)
T KOG4658|consen  580 GNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK  658 (889)
T ss_pred             CCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence            98888899999999999999999999998 88999999999999999988765566777777999999998765422  2


Q ss_pred             CCCccccCCCCcCeecc
Q 041782          265 PVPSSISELKRLEYLDL  281 (821)
Q Consensus       265 ~~p~~l~~l~~L~~L~L  281 (821)
                      ..-..+.++..|+.+..
T Consensus       659 ~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  659 LLLKELENLEHLENLSI  675 (889)
T ss_pred             hhHHhhhcccchhhhee
Confidence            22223344444544444

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.85  E-value=3.4e-09  Score=74.51  Aligned_cols=42  Identities=45%  Similarity=0.889  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeC
Q 041782           33 AGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCN   83 (821)
Q Consensus        33 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~   83 (821)
                      ++|++||++||+++..++.        ..+.+|+.. .+.+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~--------~~l~~W~~~-~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS--------GVLSSWNPS-SDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC--------cccccCCCc-CCCCCeeeccEEeC
Confidence            5799999999999986442        279999872 12799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2e-09  Score=82.94  Aligned_cols=60  Identities=47%  Similarity=0.651  Sum_probs=38.4

Q ss_pred             CCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcc
Q 041782          660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL  719 (821)
Q Consensus       660 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  719 (821)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655455666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=4.9e-09  Score=80.79  Aligned_cols=60  Identities=50%  Similarity=0.589  Sum_probs=56.2

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNL  695 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  695 (821)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            589999999999977778899999999999999999988889999999999999999986

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.75  E-value=2.5e-09  Score=104.04  Aligned_cols=109  Identities=26%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCee
Q 041782          299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ  378 (821)
Q Consensus       299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~  378 (821)
                      .+.++.|++++|.+..+...    ..+++|+.|++++|.+.++..|-.++-+++.|.|++|.+...  ..+..+  -+|.
T Consensus       306 ~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KL--YSLv  377 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQNL----AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKL--YSLV  377 (490)
T ss_pred             ccceeEEeccccceeeehhh----hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhh--hhhe
Confidence            34444444444444433321    224444444444444444444445555666666666655321  223333  4566


Q ss_pred             EEEcCCCCCCCCCCCccccccCCccEEEeccCcccCc
Q 041782          379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGP  415 (821)
Q Consensus       379 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  415 (821)
                      .|++++|++........++.+|.|+++.|.+|.+.+.
T Consensus       378 nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  378 NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            6666666666555544566677777777777776543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.4e-09  Score=119.91  Aligned_cols=196  Identities=31%  Similarity=0.318  Sum_probs=111.3

Q ss_pred             CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782          150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  229 (821)
                      +..++.+++..|.+....    ..+..+++|+.|++.+|.+.+. ...+..+++|++|++++|.|+...  .+..++.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~----~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~  143 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKIL----NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK  143 (414)
T ss_pred             hHhHHhhccchhhhhhhh----cccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchh
Confidence            444555555555555311    2345566666666666665432 122555666777777777666432  245556677


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782          230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS  308 (821)
Q Consensus       230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~  308 (821)
                      .|++++|.++..  ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+...    ..+..+..+..+++.
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~~~~l~  216 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI----EGLDLLKKLVLLSLL  216 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc----cchHHHHHHHHhhcc
Confidence            777777776633  445556677777777776664433 1 45666777777777766521    123334444444666


Q ss_pred             CcccceeccccchhccCC--CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCC
Q 041782          309 ANNLSLITRNTVNIRLQN--KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG  363 (821)
Q Consensus       309 ~n~l~~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~  363 (821)
                      .|.++.+.....    ..  .|+.+++.++.+...+..+..+.++..|++..|++..
T Consensus       217 ~n~i~~~~~l~~----~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  217 DNKISKLEGLNE----LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cccceeccCccc----chhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence            666655443221    11  2566666666665555556666777777777777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=3e-09  Score=117.28  Aligned_cols=108  Identities=35%  Similarity=0.394  Sum_probs=56.3

Q ss_pred             CCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCee
Q 041782          200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL  279 (821)
Q Consensus       200 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  279 (821)
                      .+..++.+++..|.+.. +-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            44555555566666552 233355566666666666666533 22245566666666666666533  224445556666


Q ss_pred             ccccCCceeecccccccCCCCCCCeEECCCccccee
Q 041782          280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI  315 (821)
Q Consensus       280 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  315 (821)
                      ++++|.++..    ..+..++.|+.+++++|.+..+
T Consensus       146 ~l~~N~i~~~----~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  146 NLSGNLISDI----SGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             eeccCcchhc----cCCccchhhhcccCCcchhhhh
Confidence            6666655521    1133355555555555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.4e-09  Score=105.78  Aligned_cols=180  Identities=19%  Similarity=0.149  Sum_probs=87.1

Q ss_pred             CCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCCCCC-ccccCCCCcCee
Q 041782          203 QLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQGPVP-SSISELKRLEYL  279 (821)
Q Consensus       203 ~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L  279 (821)
                      .|++||||+..|+. .+-.-+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.... --+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46667776666653 122334556666666666666666666666666666666666543 221100 113455556666


Q ss_pred             ccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC----chhhhhhcCCCccceEe
Q 041782          280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL----KEFLDFLNDQDQLELLD  355 (821)
Q Consensus       280 ~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~l~~l~~L~~L~  355 (821)
                      +++.|.+....                          ........-++|+.|+++++.-    ..+..-...+++|.+||
T Consensus       266 NlsWc~l~~~~--------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  266 NLSWCFLFTEK--------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             CchHhhccchh--------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence            66655544322                          1111112233444444444421    12222234556666666


Q ss_pred             cccCC-CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccC
Q 041782          356 LSANK-IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN  410 (821)
Q Consensus       356 Ls~n~-l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n  410 (821)
                      |++|. ++......+..+  +.|++|.++.|..-....-..+...++|.+||+.++
T Consensus       320 LSD~v~l~~~~~~~~~kf--~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKF--NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccccCchHHHHHHhc--chheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            66553 222222233333  556666666554321111112344567777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=4.2e-09  Score=114.20  Aligned_cols=19  Identities=32%  Similarity=0.531  Sum_probs=17.0

Q ss_pred             ccccCCCCCEEeCCCCCCC
Q 041782          108 SLFHLRHLEWLSLADNNFN  126 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~  126 (821)
                      .++.|+.||+|.|.++++.
T Consensus       104 ~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             eeccccceeeEEecCcchh
Confidence            7889999999999999875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.5e-07  Score=91.89  Aligned_cols=86  Identities=24%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             CCCCCCEEEccCCcCCC--CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCc
Q 041782          200 NLTQLTYINFDLNQLTG--PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRL  276 (821)
Q Consensus       200 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L  276 (821)
                      ..+.++.+||.+|.|+.  .+..-+.++|.|++|+++.|.+...+-..-..+.+|++|-|.+..+...-. ..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            35566666666666653  233344566677777777766653332211345566666666665543222 123345555


Q ss_pred             CeeccccCC
Q 041782          277 EYLDLHSNN  285 (821)
Q Consensus       277 ~~L~L~~n~  285 (821)
                      ++|+++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            555555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=5e-08  Score=95.28  Aligned_cols=182  Identities=20%  Similarity=0.212  Sum_probs=117.1

Q ss_pred             CCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCC-CccccCCCCCCCE
Q 041782          178 TELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGY-LPSQIGSLTQLTA  254 (821)
Q Consensus       178 ~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~  254 (821)
                      +.|++|||++..++. .+-.-+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++.. ..--+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            359999999987753 233346789999999999999999999999999999999999874 4421 1123568999999


Q ss_pred             EEccCccCCCCCCcc-ccC-CCCcCeeccccCCce-eecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEE
Q 041782          255 LDLSCNQFQGPVPSS-ISE-LKRLEYLDLHSNNLS-GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL  331 (821)
Q Consensus       255 L~Ls~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  331 (821)
                      |+++.|.+....... +.+ -++|+.|+++++.-. +.-.......++++|.+|||++|..-.                 
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-----------------  327 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-----------------  327 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-----------------
Confidence            999999876433221 111 257888888887521 000111223455666666666543211                 


Q ss_pred             ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhcc-CCCCeeEEEcCCC
Q 041782          332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNV-TTGNLQFVNLSYN  385 (821)
Q Consensus       332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~-~~~~L~~L~Ls~n  385 (821)
                             ......+.+++.|++|.++.|..  .+|..+..+ ..++|.+|++.++
T Consensus       328 -------~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  328 -------NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -------chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence                   22334456667777777777753  344433222 1267777777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=3.5e-08  Score=107.20  Aligned_cols=176  Identities=27%  Similarity=0.285  Sum_probs=105.8

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCC-CCCCEEecCCc---------cccccCCccccCCCCCCEEEccCCcCCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQ-TELSWLALANI---------NLIGEFPSWLMNLTQLTYINFDLNQLTG  216 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l-~~L~~L~L~~n---------~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  216 (821)
                      |..+++||+|.|.++.+...     ..+..+ ..|++|.-.+.         .-.|.+..++ -...|...++++|.++ 
T Consensus       105 ifpF~sLr~LElrg~~L~~~-----~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTA-----KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-  177 (1096)
T ss_pred             eccccceeeEEecCcchhhh-----hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence            77888999999999987642     111111 12333322111         0011211111 1235667777788777 


Q ss_pred             CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc-cccCCCCcCeeccccCCceeecccccc
Q 041782          217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS-SISELKRLEYLDLHSNNLSGNVYIEEL  295 (821)
Q Consensus       217 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~  295 (821)
                      .+..++.-++.|+.|||++|+++..  +.+..+++|++|||++|.+. .+|. ....+. |+.|.+++|.++..    ..
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL----~g  249 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL----RG  249 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh----hh
Confidence            5666777777888888888888754  36777888888888888877 4443 222333 78888888877632    12


Q ss_pred             cCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782          296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL  338 (821)
Q Consensus       296 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l  338 (821)
                      +.++++|+.||+++|-+.+...-.+ +-.+..|+.|+|.+|.+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCcc
Confidence            5677788888888887665433221 11245566677777766

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=7.5e-08  Score=83.21  Aligned_cols=81  Identities=33%  Similarity=0.513  Sum_probs=39.3

Q ss_pred             ccEEEcccccccCccccccc-cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782          637 LTGIILSNNKLIGKIPTSIS-ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS  715 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  715 (821)
                      |+.++|++|.+. ..|+.|. ..+.++.|+|++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|-+||.-
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            444555555554 2333332 2234555555555555 44444555555555555555555 234444445555555555


Q ss_pred             cCccc
Q 041782          716 DNNLT  720 (821)
Q Consensus       716 ~N~l~  720 (821)
                      +|.+-
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=4.7e-07  Score=88.59  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CcccEEeccCccccccC-chhhcCCCCCCEEeCCCCcCCcC-CchhhCCCCCCCEEEccCCcCc
Q 041782          475 TNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLGNNQIADI-FPSWLGTLPELKVLMLQFNRFH  536 (821)
Q Consensus       475 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~  536 (821)
                      +++..+-+..|.+.... -..+..++.+.-|+|+.|+|... .-+.+.++++|..|.+++|++.
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            34444445555443221 12333444555555665555433 1234555666666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=2.7e-07  Score=89.05  Aligned_cols=42  Identities=31%  Similarity=0.403  Sum_probs=23.3

Q ss_pred             ccCCCCCCCEEEccCccCCCCCCccc----cCCCCcCeeccccCCc
Q 041782          245 QIGSLTQLTALDLSCNQFQGPVPSSI----SELKRLEYLDLHSNNL  286 (821)
Q Consensus       245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~l  286 (821)
                      ++.++++|+..+||.|.+....|+.+    ++-+.|++|.+++|.+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            34566666666666666654444332    3445555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=2e-05  Score=83.40  Aligned_cols=75  Identities=11%  Similarity=0.068  Sum_probs=46.2

Q ss_pred             CCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCc
Q 041782          473 NATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLR  552 (821)
Q Consensus       473 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  552 (821)
                      .+.+++.|++++|.++ .+|.   -..+|+.|.+++|.-...+|+.+  .++|+.|++++|.....+        .++|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------ccccc
Confidence            3577888888888776 4551   23468888888765544555544  257788888877322122        34567


Q ss_pred             EEEccCCcC
Q 041782          553 IIDLSHNRF  561 (821)
Q Consensus       553 ~L~Ls~N~l  561 (821)
                      .|+++++..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            777766553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.1e-05  Score=56.75  Aligned_cols=36  Identities=47%  Similarity=0.702  Sum_probs=19.3

Q ss_pred             CCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782          660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS  696 (821)
Q Consensus       660 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  696 (821)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555556666555 34445555566666666665555

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.82  E-value=1e-06  Score=76.28  Aligned_cols=59  Identities=31%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      .++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+..+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            4445555555554 44444555555555555555554 34444545555555555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.78  E-value=1.4e-05  Score=77.51  Aligned_cols=93  Identities=19%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCc-hhccCCCCCCEEecCCccc---cccCC-------ccccCCCCCCEEEccCCcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASF-SWIAKQTELSWLALANINL---IGEFP-------SWLMNLTQLTYINFDLNQLT  215 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~---~~~~p-------~~l~~l~~L~~L~Ls~n~l~  215 (821)
                      +..+..++.+|||+|.|...-..++ ..+.+-.+|++.++++--.   ...++       ..+-+|++|+..+||.|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            4457778888888887765322110 2344556666666665321   11222       22445666666666666665


Q ss_pred             CCcchh----hhcCCCCCEEEccCCcCC
Q 041782          216 GPIPNW----LANLNRLTILSLKSNQLR  239 (821)
Q Consensus       216 ~~~p~~----~~~l~~L~~L~Ls~n~l~  239 (821)
                      ...|..    ++.-+.|.+|.+++|.+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCC
Confidence            444433    334455666666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=5.5e-05  Score=53.16  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=15.6

Q ss_pred             CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCC
Q 041782          203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLR  239 (821)
Q Consensus       203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  239 (821)
                      +|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444444

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.63  E-value=2.1e-06  Score=88.19  Aligned_cols=38  Identities=24%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             CCCCCEEeCCCCcCC-cCCchhhCCCCCCCEEEccCCcC
Q 041782          498 CTMLEFLDLGNNQIA-DIFPSWLGTLPELKVLMLQFNRF  535 (821)
Q Consensus       498 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~N~l  535 (821)
                      +..|+.+.|+++... +..-+.+..+++|+.+++-+++-
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            455666666666443 22333445566666666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.0002  Score=76.06  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=18.0

Q ss_pred             CcccEEeccCccccccCchhhcCCCCCCEEeCCCC
Q 041782          475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN  509 (821)
Q Consensus       475 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  509 (821)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666666644 2333332  46667776655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=1.7e-05  Score=91.33  Aligned_cols=134  Identities=16%  Similarity=0.224  Sum_probs=76.8

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhcc-CCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIA-KQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL  228 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  228 (821)
                      .+|++||+++......  .+...++ .+|.|+.|.+++-.+.. ++-....++++|..||+|++.++..  ..++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            5788888877543311  1113333 37777777777755532 2233345677777777777777643  567777777


Q ss_pred             CEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCC--C----ccccCCCCcCeeccccCCcee
Q 041782          229 TILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPV--P----SSISELKRLEYLDLHSNNLSG  288 (821)
Q Consensus       229 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~  288 (821)
                      ++|.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..|++|+.||.+++.+.+
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            777776655542 22235667777777777765443211  0    011235566666666555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00013  Score=68.10  Aligned_cols=83  Identities=24%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEEC
Q 041782          228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL  307 (821)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  307 (821)
                      ...+||++|.+...  ..|..++.|.+|.+++|.|+.+-|.--.-+++|+.|.+.+|.+...... +-+..+++|++|.+
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL  120 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence            34445555544321  2344455555555555555543333223344455555555554422111 22445555555555


Q ss_pred             CCcccc
Q 041782          308 SANNLS  313 (821)
Q Consensus       308 ~~n~l~  313 (821)
                      -+|.++
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.47  E-value=5.8e-06  Score=85.08  Aligned_cols=261  Identities=16%  Similarity=0.084  Sum_probs=133.2

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhc-cCCCCCCEEecCCccc-cccCCc-cccCCCCCCEEEccCCc-CCCC-cchh
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWI-AKQTELSWLALANINL-IGEFPS-WLMNLTQLTYINFDLNQ-LTGP-IPNW  221 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~l~~L~~L~L~~n~~-~~~~p~-~l~~l~~L~~L~Ls~n~-l~~~-~p~~  221 (821)
                      -.+++++++|++.++...  ....+..+ ..+++|++|++..|.. +...-. -...+++|++|+++.+. +++. +-..
T Consensus       160 ~~~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             hhhCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            456778888888777522  11112333 3577888888877533 222222 12357788888888774 3331 1223


Q ss_pred             hhcCCCCCEEEccCCcCCCCCcccc----CCCCCCCEEEccCcc-CCCCCCc-cccCCCCcCeeccccCCceeecccccc
Q 041782          222 LANLNRLTILSLKSNQLRGYLPSQI----GSLTQLTALDLSCNQ-FQGPVPS-SISELKRLEYLDLHSNNLSGNVYIEEL  295 (821)
Q Consensus       222 ~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~  295 (821)
                      +.++..++.+.+.+|.=.+.  +.+    +.+..+..+++.++. +++.--. .-..+..|++|+.+++...+..+....
T Consensus       238 ~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL  315 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL  315 (483)
T ss_pred             hccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence            34555566666665431110  111    223345555555543 2221100 113466777777777654443333233


Q ss_pred             cCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC---chhhhhhcCCCccceEecccCCCCCCC-Ccchhc
Q 041782          296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL---KEFLDFLNDQDQLELLDLSANKIPGKI-PGWLLN  371 (821)
Q Consensus       296 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~  371 (821)
                      -.+..+|+.|-++.++.-+-.....-....+.|+.+++.+|..   .++...-.+++.|+.+.++++...... ...+..
T Consensus       316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~  395 (483)
T KOG4341|consen  316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS  395 (483)
T ss_pred             hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence            4466777777777765321111111123566777777777765   223333456677777777776542211 111111


Q ss_pred             --cCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782          372 --VTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK  411 (821)
Q Consensus       372 --~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~  411 (821)
                        .....+..+.|+++..+....-.....+++|+.+++.+++
T Consensus       396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence              1114566666666665544333344455666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.37  E-value=6.6e-05  Score=86.60  Aligned_cols=138  Identities=19%  Similarity=0.182  Sum_probs=85.7

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      .+|++||+++...-...-|..+            =..||+|++|.+++-.+....  ......++++|+.||+|+.++..
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~ki------------g~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKI------------GTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHH------------hhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccC
Confidence            5778888877544222233332            124677888887776554321  11334567888888888877754


Q ss_pred             cCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCC--c----cccCCCCCCCEEEccCccCCCC
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYL--P----SQIGSLTQLTALDLSCNQFQGP  265 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~~~  265 (821)
                      .  ..++++++|+.|.+.+=.+.. ..-..+.+|++|++||+|........  .    +.-..+++|+.||.|++.+.+.
T Consensus       188 l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  188 L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            3  557778888888777666553 22235667888888888876544221  1    1223578899999998877654


Q ss_pred             C
Q 041782          266 V  266 (821)
Q Consensus       266 ~  266 (821)
                      +
T Consensus       266 ~  266 (699)
T KOG3665|consen  266 I  266 (699)
T ss_pred             H
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.31  E-value=0.00038  Score=65.04  Aligned_cols=84  Identities=23%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             CeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE
Q 041782          327 KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD  406 (821)
Q Consensus       327 ~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  406 (821)
                      +...+++++|.+..++ .|..++.|..|.+.+|+|+...|.--..+  ++|+.|.|.+|.+..+..-.....++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~--p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFL--PNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhc--cccceEEecCcchhhhhhcchhccCCccceee
Confidence            3444555555554332 25567788888888888886666544444  77888888888887665544556778888888


Q ss_pred             eccCccc
Q 041782          407 LRSNKLQ  413 (821)
Q Consensus       407 L~~n~l~  413 (821)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            8888765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.00047  Score=67.40  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             CCCCCCEEEccCC--cCCCCcchhhhcCCCCCEEEccCCcCCCC-CccccCCCCCCCEEEccCccCCCCC---CccccCC
Q 041782          200 NLTQLTYINFDLN--QLTGPIPNWLANLNRLTILSLKSNQLRGY-LPSQIGSLTQLTALDLSCNQFQGPV---PSSISEL  273 (821)
Q Consensus       200 ~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l  273 (821)
                      .+++|+.|.++.|  .+.+.++-....+++|++|++++|++... --..+..+.+|..|++.+|..+..-   -..|.-+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            3444444444444  33333333333345555555555544410 0011233444555555555444211   0123445


Q ss_pred             CCcCeecc
Q 041782          274 KRLEYLDL  281 (821)
Q Consensus       274 ~~L~~L~L  281 (821)
                      ++|++|+-
T Consensus       143 ~~L~~LD~  150 (260)
T KOG2739|consen  143 PSLKYLDG  150 (260)
T ss_pred             hhhccccc
Confidence            55555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.00059  Score=66.70  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             CCCCCCCEEEccCc--cCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccce
Q 041782          247 GSLTQLTALDLSCN--QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL  314 (821)
Q Consensus       247 ~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  314 (821)
                      -.+++|++|.++.|  ++.+.++.....+++|++|++++|++...-.. .-+..+++|..|++.+|..+.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc
Confidence            34445555555555  33333333333445555555555554421111 124445555555555554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.75  E-value=0.0029  Score=57.11  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=38.5

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +.++++|+.+.+.. .+.....   ..+.++++|+.+.+.++ +...-...|.++++|+.+.+.. .+.......|..++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            55556666666653 3333333   33444445555555442 2222223344555555555543 22222233444455


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 041782          227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC  259 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  259 (821)
                      +|+.+++..+ +.......|.+. +|+.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5555555443 332233344444 555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.51  E-value=0.0085  Score=54.01  Aligned_cols=123  Identities=19%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      ..|.++++|+.+.+.. .+....      ...|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~------~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIG------ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-------TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeC------hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence            3466778888888874 444332      234667888899988875 6545556788888899999875 555555567


Q ss_pred             hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782          519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI  576 (821)
Q Consensus       519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l  576 (821)
                      |..+++|+.+++..+ +...-...+  ..+ +|+.+.+.. .+. .++...|.++++|
T Consensus        77 F~~~~~l~~i~~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccccccCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            778889999988765 432222233  344 788888776 333 5666667666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.00012  Score=71.57  Aligned_cols=85  Identities=29%  Similarity=0.369  Sum_probs=43.4

Q ss_pred             CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC-chhhCCC
Q 041782          444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF-PSWLGTL  522 (821)
Q Consensus       444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l  522 (821)
                      +.+.+.|+..+|.++++        .....++.|+.|.|+-|+|+..  ..+..|++|++|+|..|.|.++- -..+.++
T Consensus        18 l~~vkKLNcwg~~L~DI--------sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--------SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHhhhhcccCCCccHH--------HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            34455555555555533        1233455566666666665533  23555566666666666555431 1234455


Q ss_pred             CCCCEEEccCCcCccc
Q 041782          523 PELKVLMLQFNRFHGE  538 (821)
Q Consensus       523 ~~L~~L~L~~N~l~~~  538 (821)
                      |+|+.|-|..|.-.|.
T Consensus        88 psLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGE  103 (388)
T ss_pred             chhhhHhhccCCcccc
Confidence            5555555555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.00021  Score=69.78  Aligned_cols=87  Identities=25%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCe
Q 041782          225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIV  304 (821)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~  304 (821)
                      +.+.+.|+..+|.++++  .-..+++.|++|.|+-|+|+..  ..+..+++|++|+|..|.|...-.. ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhh
Confidence            34556666666666643  3344667777777777777643  2356777777777777776643222 45667777777


Q ss_pred             EECCCcccceec
Q 041782          305 LFLSANNLSLIT  316 (821)
Q Consensus       305 L~L~~n~l~~~~  316 (821)
                      |.|..|.-.+..
T Consensus        93 LWL~ENPCc~~a  104 (388)
T KOG2123|consen   93 LWLDENPCCGEA  104 (388)
T ss_pred             HhhccCCccccc
Confidence            777777655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0046  Score=36.05  Aligned_cols=11  Identities=64%  Similarity=0.899  Sum_probs=4.4

Q ss_pred             CEEeCCCcccC
Q 041782          662 NCLNLSGNNLL  672 (821)
Q Consensus       662 ~~L~Ls~N~l~  672 (821)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.34  E-value=0.0026  Score=72.21  Aligned_cols=16  Identities=31%  Similarity=0.183  Sum_probs=9.0

Q ss_pred             hcCCCccceEecccCC
Q 041782          345 LNDQDQLELLDLSANK  360 (821)
Q Consensus       345 l~~l~~L~~L~Ls~n~  360 (821)
                      ...+++++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3455566666665555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.30  E-value=0.0066  Score=35.39  Aligned_cols=21  Identities=52%  Similarity=0.757  Sum_probs=12.4

Q ss_pred             CCCeEeCCCCcccccCCCCccc
Q 041782          684 VLESLDLSNNNLSGEIPRQLAE  705 (821)
Q Consensus       684 ~L~~L~Ls~N~l~~~~p~~l~~  705 (821)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.01  E-value=0.0028  Score=72.00  Aligned_cols=110  Identities=20%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             CCCCCEEEccCCcCCCC--cchhhhcCCCCCEEEccCC-cCCCCCc----cccCCCCCCCEEEccCcc-CCCCCCcccc-
Q 041782          201 LTQLTYINFDLNQLTGP--IPNWLANLNRLTILSLKSN-QLRGYLP----SQIGSLTQLTALDLSCNQ-FQGPVPSSIS-  271 (821)
Q Consensus       201 l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-  271 (821)
                      ++.|+.|.+.++.-...  .-.....+++|+.|+++++ ......+    .....+++|+.|+++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555532211  2233344556666666542 1111111    122234555566665554 3332222222 


Q ss_pred             CCCCcCeeccccCC-ceeecccccccCCCCCCCeEECCCcc
Q 041782          272 ELKRLEYLDLHSNN-LSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       272 ~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      .+++|++|.+.+|. +++.... .....++.|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~-~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLV-SIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHH-HHHHhcCcccEEeeecCc
Confidence            24556665555554 3321111 223445555555555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.03  E-value=0.00063  Score=75.22  Aligned_cols=61  Identities=34%  Similarity=0.406  Sum_probs=36.7

Q ss_pred             ccEEEcccccccCc----cccccccC-CCCCEEeCCCcccCcc----hhhhhcCccCCCeEeCCCCcccc
Q 041782          637 LTGIILSNNKLIGK----IPTSISEL-KGLNCLNLSGNNLLGH----IPSSLGNLTVLESLDLSNNNLSG  697 (821)
Q Consensus       637 L~~L~Ls~N~l~~~----~p~~l~~L-~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~  697 (821)
                      +..+++.+|.+.+.    ....+..+ ..+++++++.|.++..    +...+.....+++|.+++|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            34467777766533    22334444 5667777777777653    33445566677777777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.12  E-value=0.00075  Score=74.65  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             CCCEEEcCCCCCCCCCCCCc-hhccCCCCCCEEecCCcccc
Q 041782          152 KLKCLELSQNNFSSPHSASF-SWIAKQTELSWLALANINLI  191 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~  191 (821)
                      .+.+|.|.+|.+.......+ ..+.....|..|++++|.+.
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            36677777777665432110 12334455555555555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.93  E-value=0.13  Score=27.70  Aligned_cols=11  Identities=55%  Similarity=0.748  Sum_probs=3.3

Q ss_pred             CCEEeCCCccc
Q 041782          661 LNCLNLSGNNL  671 (821)
Q Consensus       661 L~~L~Ls~N~l  671 (821)
                      |++|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.61  E-value=0.016  Score=55.60  Aligned_cols=82  Identities=21%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS  715 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  715 (821)
                      ..+.||++.|++. ..-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            3678999999987 45566778888999999999998 78888999999999999999988 689999999999999999


Q ss_pred             cCccc
Q 041782          716 DNNLT  720 (821)
Q Consensus       716 ~N~l~  720 (821)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99865

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.37  E-value=0.013  Score=56.13  Aligned_cols=87  Identities=17%  Similarity=0.259  Sum_probs=52.0

Q ss_pred             ccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcC
Q 041782          198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLE  277 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  277 (821)
                      +......+.||++.|++. ..-..|..++.|..|+++.|.+. ..|.+++.+..++.+++..|..+ ..|.++++.+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            334455556666666554 23334555556666666666665 45666666666666666666655 5566666666666


Q ss_pred             eeccccCCce
Q 041782          278 YLDLHSNNLS  287 (821)
Q Consensus       278 ~L~L~~n~l~  287 (821)
                      ++++-.|.+.
T Consensus       115 ~~e~k~~~~~  124 (326)
T KOG0473|consen  115 KNEQKKTEFF  124 (326)
T ss_pred             hhhhccCcch
Confidence            6666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.67  E-value=0.53  Score=28.54  Aligned_cols=14  Identities=43%  Similarity=0.484  Sum_probs=7.0

Q ss_pred             CCCCEEeCCCcccC
Q 041782          659 KGLNCLNLSGNNLL  672 (821)
Q Consensus       659 ~~L~~L~Ls~N~l~  672 (821)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.67  E-value=0.53  Score=28.54  Aligned_cols=14  Identities=43%  Similarity=0.484  Sum_probs=7.0

Q ss_pred             CCCCEEeCCCcccC
Q 041782          659 KGLNCLNLSGNNLL  672 (821)
Q Consensus       659 ~~L~~L~Ls~N~l~  672 (821)
                      ++|+.|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.06  E-value=0.4  Score=29.10  Aligned_cols=17  Identities=59%  Similarity=0.657  Sum_probs=10.2

Q ss_pred             ccCCCeEeCCCCccccc
Q 041782          682 LTVLESLDLSNNNLSGE  698 (821)
Q Consensus       682 l~~L~~L~Ls~N~l~~~  698 (821)
                      +++|++|+|++|+|...
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            34566666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.06  E-value=0.4  Score=29.10  Aligned_cols=17  Identities=59%  Similarity=0.657  Sum_probs=10.2

Q ss_pred             ccCCCeEeCCCCccccc
Q 041782          682 LTVLESLDLSNNNLSGE  698 (821)
Q Consensus       682 l~~L~~L~Ls~N~l~~~  698 (821)
                      +++|++|+|++|+|...
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            34566666666666643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.98  E-value=0.31  Score=28.95  Aligned_cols=18  Identities=28%  Similarity=0.359  Sum_probs=7.8

Q ss_pred             CCCCEEeCCCcccCcchh
Q 041782          659 KGLNCLNLSGNNLLGHIP  676 (821)
Q Consensus       659 ~~L~~L~Ls~N~l~~~ip  676 (821)
                      ++|++|+|++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            345555555555544433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.93  E-value=0.29  Score=46.45  Aligned_cols=86  Identities=19%  Similarity=0.125  Sum_probs=34.6

Q ss_pred             CCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhc
Q 041782          501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN  580 (821)
Q Consensus       501 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~  580 (821)
                      ++.+|-++..|..+.-+.+..+++++.|.+.+|+-.+...........++|+.|+|++|.=..+---.++..+++|+.+.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            33344444444433333344444444444444433221111111123456666666666421111112333444555555


Q ss_pred             cccchh
Q 041782          581 KSQLKY  586 (821)
Q Consensus       581 ~~~~~~  586 (821)
                      +..+++
T Consensus       183 l~~l~~  188 (221)
T KOG3864|consen  183 LYDLPY  188 (221)
T ss_pred             hcCchh
Confidence            444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.38  E-value=0.2  Score=47.51  Aligned_cols=80  Identities=20%  Similarity=0.140  Sum_probs=38.9

Q ss_pred             CcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCc-hhh-cCCCCCCEEeCCCC-cCCcCCchhhCCCC
Q 041782          447 LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP-RSL-ANCTMLEFLDLGNN-QIADIFPSWLGTLP  523 (821)
Q Consensus       447 L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~-~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  523 (821)
                      ++.+|-++..|..+      ..+.+.+++.++.|.+.+|+--+..- +.+ +-.++|+.|+|++| +|++..-.++..++
T Consensus       103 IeaVDAsds~I~~e------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  103 IEAVDASDSSIMYE------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             EEEEecCCchHHHH------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            45555555555443      22233445555555555554221100 001 12356666666665 45555555556666


Q ss_pred             CCCEEEccC
Q 041782          524 ELKVLMLQF  532 (821)
Q Consensus       524 ~L~~L~L~~  532 (821)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            666665543

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=81.66  E-value=5.8  Score=42.81  Aligned_cols=63  Identities=21%  Similarity=0.057  Sum_probs=33.2

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcccccc---CCccccCCCCCCEEEccCCcC
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGE---FPSWLMNLTQLTYINFDLNQL  214 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~---~p~~l~~l~~L~~L~Ls~n~l  214 (821)
                      .+.+++|+.|.....+|........-..+++++.+...+.-.   -+-..+.-++|++.+++.|..
T Consensus       215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence            456677777766666663333333444556666655443211   122234455666666666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	821
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-35
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		2e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		7e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 203/760 (26%), Positives = 301/760 (39%), Gaps = 128/760 (16%)
Query: 71  DRDCCSWDGVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYS-- 128
           +++ C++DGV C +D    I L+ +             L  L  LE L L++++ N S  
Sbjct: 33  NKNPCTFDGVTCRDDKVTSIDLS-SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 91
Query: 129 ------KIPSEIMNLSSFSGQV---PSLGNLTKLKCLELSQNNFSSPHSAS--------- 170
                  + S  ++ +S SG V    SLG+ + LK L +S N    P   S         
Sbjct: 92  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 171 --------------FSWIAKQ--TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
                           W+      EL  LA++   + G+    +     L +++   N  
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 209
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
           +  IP +L + + L  L +  N+L G     I + T+L  L++S NQF GP+P     LK
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLK 266
Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
            L+YL L  N  +G +  + L     +L  L LS N+                  F G  
Sbjct: 267 SLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVP-----------PFFGSC 314
Query: 335 SCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
           S                     S+N   G++P   L    G L+ ++LS+N  +G    S
Sbjct: 315 S--------------LLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPES 359
Query: 395 XXXXXXXXXXXXXRSNKLQGPLPIP-----PESTIHYL-VSNNLLTGKLAPWLCNLNSLR 448
                         SN   GP+ +P     P++T+  L + NN  TGK+ P L N + L 
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKN------------------ATNLKMIDLSHNLLQGR 490
            L LS N+LSG +P  L +    ++                     L+ + L  N L G 
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           IP  L+NCT L ++ L NN++    P W+G L  L +L L  N F G I  P        
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRS 536
Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYM--------------------QDQ 590
           L  +DL+ N F+G +P+  F+    I     +  +Y+                    Q  
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGK 650
             + LN +   +   I   S  Y    S T  N G  M       FL    +S N L G 
Sbjct: 597 RSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMM-------FLD---MSYNMLSGY 644
Query: 651 IPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLA 710
           IP  I                   IP  +G+L  L           G IP+ ++ LT L 
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 711 VFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSR 750
             D+S+NNL+G IP+  QF TF  + F  NPGLCG PL R
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 204/760 (26%), Positives = 301/760 (39%), Gaps = 128/760 (16%)
Query: 71  DRDCCSWDGVKCNEDTGHVIKLNLTXXXXXXXXXXXXXLFHLRHLEWLSLADNNFNYS-- 128
           +++ C++DGV C +D    I L+ +             L  L  LE L L++++ N S  
Sbjct: 36  NKNPCTFDGVTCRDDKVTSIDLS-SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94
Query: 129 --KIPSEIMNLS----SFSGQV---PSLGNLTKLKCLELSQNNFSSPHSAS--------- 170
             K  + + +L     S SG V    SLG+ + LK L +S N    P   S         
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 171 --------------FSWIAKQ--TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
                           W+      EL  LA++   + G+    +     L +++   N  
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212
Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
           +  IP +L + + L  L +  N+L G     I + T+L  L++S NQF GP+P     LK
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLK 269
Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
            L+YL L  N  +G +  + L     +L  L LS N+                  F G  
Sbjct: 270 SLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVP-----------PFFGSC 317
Query: 335 SCNLKXXXXXXXXXXXXXXXXXSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
           S                     S+N   G++P   L    G L+ ++LS+N  +G    S
Sbjct: 318 S--------------LLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPES 362
Query: 395 XXXXXXXXXXXXXRSNKLQGPLPIP-----PESTIHYL-VSNNLLTGKLAPWLCNLNSLR 448
                         SN   GP+ +P     P++T+  L + NN  TGK+ P L N + L 
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKN------------------ATNLKMIDLSHNLLQGR 490
            L LS N+LSG +P  L +    ++                     L+ + L  N L G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           IP  L+NCT L ++ L NN++    P W+G L  L +L L  N F G I  P        
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRS 539
Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYM--------------------QDQ 590
           L  +DL+ N F+G +P+  F+    I     +  +Y+                    Q  
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGK 650
             + LN +   +   I   S  Y    S T  N G  M       FL    +S N L G 
Sbjct: 600 RSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMM-------FLD---MSYNMLSGY 647
Query: 651 IPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIPRQLAELTSLA 710
           IP  I                   IP  +G+L  L           G IP+ ++ LT L 
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 711 VFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSR 750
             D+S+NNL+G IP+  QF TF  + F  NPGLCG PL R
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 130/348 (37%), Gaps = 111/348 (31%)
Query: 412 LQGPLPIP------PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465
           L  P PIP      P     Y+   N L G + P +  L  L  L ++H  +SG +P  L
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
           S  K       L  +D S+N L G +P S++                        +LP L
Sbjct: 122 SQIKT------LVTLDFSYNALSGTLPPSIS------------------------SLPNL 151
Query: 526 KVLMLQFNRFHGEIGEPDTGFVFPKL-RIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQL 584
             +    NR  G I  PD+   F KL   + +S NR +GK+P  +     A    +++ L
Sbjct: 152 VGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209
Query: 585 KYMQDQPGQSLNYILPSSSAYIF--DYSLQYIYAYSITMVNKGIEMNYGKV--SNFLTGI 640
           +                 ++ +F  D + Q I+     +    +  + GKV  S  L G+
Sbjct: 210 E---------------GDASVLFGSDKNTQKIH-----LAKNSLAFDLGKVGLSKNLNGL 249
Query: 641 ILSNNKLIGKIPTSISEXXXXXXXXXXXXXXXXHIPSSLGNLTVLEXXXXXXXXXXGEIP 700
            L NN++ G +P  ++                                            
Sbjct: 250 DLRNNRIYGTLPQGLT-------------------------------------------- 265
Query: 701 RQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
            QL  L SL   +VS NNL G+IPQG     F+ S++  N  LCG PL
Sbjct: 266 -QLKFLHSL---NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 128 SKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
           S IP++   L   S  + +L +     LTKL  L L  N   +  +  F  +   TEL  
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGT 87
Query: 183 LALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
           L LAN N +   P  + + LTQL  +    NQL          L +L  L L +NQL+  
Sbjct: 88  LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 242 LPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
                  LT L  L LS NQ Q     +   L +L+ + L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 128 SKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
           S IP++   L   S  + +L +     LTKL  L L  N   +  +  F  +   TEL  
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGT 87
Query: 183 LALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
           L LAN N +   P  + + LTQL  +    NQL          L +L  L L +NQL+  
Sbjct: 88  LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 242 LPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
                  LT L  L LS NQ Q     +   L +L+ + L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 111 HLRHLEWLSLADNNFN------YSKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELS 159
           HLRHLE L L+ N         ++ +PS +  L  F  ++ ++       L+KL+ L L 
Sbjct: 57  HLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 160 QNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219
            N   S  S +F+ +     L    L  +  I E  +    L  L Y+N  +  L   IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL 279
           N L  L RL  L L  N+L    P     LT L  L L   Q      ++  +LK LE L
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 280 DLHSNNL 286
           +L  NNL
Sbjct: 232 NLSHNNL 238

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LT 202
           + +L  LT L  L L+ N   S  +  F    K T L  L L   N +   P  + + LT
Sbjct: 78  ISALKELTNLTYLILTGNQLQSLPNGVFD---KLTNLKELVLVE-NQLQSLPDGVFDKLT 133
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            LTY+N   NQL          L  LT L L  NQL+         LTQL  L L  NQ 
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 263 QGPVPSSISELKRLEYLDLHSN 284
           +         L  L+Y+ LH N
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 111 HLRHLEWLSLADNNFN------YSKIPSEIMNLSSFSGQVPSLGN-----LTKLKCLELS 159
           HLRHLE L L+ N         ++ +PS +  L  F  ++ ++       L+KL+ L L 
Sbjct: 57  HLRHLEILQLSKNLVRKIEVGAFNGLPS-LNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 160 QNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP 219
            N   S  S +F+ +     L    L  +  I E  +    L  L Y+N  +  L   IP
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKD-IP 172
Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYL 279
           N L  L RL  L L  N+L    P     LT L  L L   Q      ++  +LK LE L
Sbjct: 173 N-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 280 DLHSNNL 286
           +L  NNL
Sbjct: 232 NLSHNNL 238

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
           +S+R LDLSH F+  +      NS++F+   +LK+++L++N +      +      L+ L
Sbjct: 266 SSVRHLDLSHGFVFSL------NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
           +L  N + +++ S    LP++  + LQ N  H  I +  T     KL+ +DL  N
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQTFKFLEKLQTLDLRDN 372

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
           HLRHLE L L+ N+          + + +F+G       L  L  LEL  N  ++  + +
Sbjct: 86  HLRHLEILQLSRNHI-------RTIEIGAFNG-------LANLNTLELFDNRLTTIPNGA 131
Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINF-DLNQLTGPIPNWLANLNRL 228
           F +++K  EL WL     N I   PS+  N +  L  ++  +L +L+         L+ L
Sbjct: 132 FVYLSKLKEL-WL---RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
             L+L    LR  +P+ +  L +L  LDLS N      P S   L  L+ L +  + +  
Sbjct: 188 RYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244
Query: 289 NVYIEELLPKLKSLIVLFLSANNLSLI 315
            V        L+SL+ + L+ NNL+L+
Sbjct: 245 -VIERNAFDNLQSLVEINLAHNNLTLL 270

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQL 214
           L+L  N+  S  +  F  +   T L+ L L   N +   P+ + N LT LTY+N   NQL
Sbjct: 33  LDLETNSLKSLPNGVFDEL---TSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 215 TGPIPNWLAN-LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISEL 273
              +PN + + L +L  L+L +NQL+         LTQL  L L  NQ +         L
Sbjct: 89  QS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 274 KRLEYLDLHSN 284
             L+Y+ LH N
Sbjct: 148 TSLQYIWLHDN 158

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            +T +  D NQ T  +P  L+N   LT++ L +N++         ++TQL  L LS N+ 
Sbjct: 32  DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
           +   P +   LK L  L LH N++S  V  E     L +L  L + AN L
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLAIGANPL 138

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 137 LSSFSGQVPS---LGNLTKLKCLELSQN-----------------NFSSPHSASFSWIAK 176
           L+ F+ Q+     L NLT L  LELS N                 NFSS        +A 
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
            T L  L +++ N + +  S L  LT L  +    NQ++   P  L  L  L  LSL  N
Sbjct: 172 LTTLERLDISS-NKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
           QL+      + SLT LT LDL+ NQ     P  +S L +L  L L +N +S
Sbjct: 228 QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	821
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-169
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  507 bits (1308), Expect = e-169
 Identities = 208/815 (25%), Positives = 323/815 (39%), Gaps = 141/815 (17%)

Query: 31  CHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVI 90
               E   L+ FK+ L                  W+    +++ C++DGV C      V 
Sbjct: 9   SLYREIHQLISFKDVLPDK----------NLLPDWS---SNKNPCTFDGVTC--RDDKVT 53

Query: 91  K--------------------------------------------------LNLTSSCIY 100
                                                              L+L+ + + 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113

Query: 101 GSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS----------FSGQVPS---- 146
           G + + +SL     L++L+++ N  ++    S  + L+S           SG        
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTY 206
                +LK L +S N  S     S         L +L +++ N     P  L + + L +
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRC-----VNLEFLDVSSNNFSTGIPF-LGDCSALQH 227

Query: 207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266
           ++   N+L+G     ++    L +L++ SNQ  G +P     L  L  L L+ N+F G +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285

Query: 267 PSSIS-ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS-LITRNTVNIRL 324
           P  +S     L  LDL  N+  G   +         L  L LS+NN S  +  +T+    
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFSGELPMDTL---- 339

Query: 325 QNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSY 384
                        ++           L++LDLS N+  G++P  L N  + +L  ++LS 
Sbjct: 340 -----------LKMR----------GLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSS 377

Query: 385 NLITG-FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE----STIHYL-VSNNLLTGKLA 438
           N  +G             L  L L++N   G   IPP     S +  L +S N L+G + 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498
             L +L+ LR L L  N L G +PQ L           L+ + L  N L G IP  L+NC
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYV------KTLETLILDFNDLTGEIPSGLSNC 489

Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
           T L ++ L NN++    P W+G L  L +L L  N F G I  P        L  +DL+ 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNT 547

Query: 559 NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDY-------SL 611
           N F+G +P+  F+    I     +  +Y+  +          + +   F          L
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 612 QYIYAYSITMVN-KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN 670
                 +IT     G        +  +  + +S N L G IP  I  +  L  LNL  N+
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFN 730
           + G IP  +G+L  L  LDLS+N L G IP+ ++ LT L   D+S+NNL+G IP+  QF 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727

Query: 731 TFENSSFEGNPGLCGKPLSRNCEISESSQKEDQDS 765
           TF  + F  NPGLCG PL R    +       Q S
Sbjct: 728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (691), Expect = 9e-80
 Identities = 114/686 (16%), Positives = 215/686 (31%), Gaps = 92/686 (13%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-------- 139
           ++  LNLT + +     ++        L  L +  N  +    P     L          
Sbjct: 26  NITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQH 82

Query: 140 --FSGQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS 196
              S     +    T L  L L  N+     +  F     Q  L  L L++  L      
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK---QKNLITLDLSHNGLSSTKLG 139

Query: 197 WLMNLTQLTYINFDLNQLTGPIPNWLANLN--RLTILSLKSNQLRGYLPSQIGSLTQLTA 254
             + L  L  +    N++       L       L  L L SNQ++ + P    ++ +L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 255 LDLSCNQFQGPVPSSISE---LKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311
           L L+  Q    +   +        +  L L ++ LS       L  K  +L +L LS NN
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEF----------LDFLNDQDQLELLDLSANKI 361
           L+++  ++       +  +  L   N++            + +LN +       +S   +
Sbjct: 260 LNVVGNDS--FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 362 PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE 421
           P         +    L+ +N+  N I G        L  +L  L L ++       +  E
Sbjct: 318 PKIDDFSFQWLK--CLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSL-RTLTNE 373

Query: 422 STIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMID 481
                                  + L +L+L+ N +S +          F    +L+++D
Sbjct: 374 ----------------TFVSLAHSPLHILNLTKNKISKIESD------AFSWLGHLEVLD 411

Query: 482 LSHNLLQGRIPRS-LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG 540
           L  N +   +          +  + L  N+   +  +    +P L+ LML+         
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP 600
            P        L I+DLS+N  +  +     +           +L+ +             
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIAN-INDDMLE--------GLEKLEIL------------- 509

Query: 601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKG 660
                +   +L  ++ ++                  L  + L +N           +L  
Sbjct: 510 ----DLQHNNLARLWKHANPGGPIYFLKGLSH----LHILNLESNGFDEIPVEVFKDLFE 561

Query: 661 LNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAE-LTSLAVFDVSDNNL 719
           L  ++L  NNL     S   N   L+SL+L  N ++    +       +L   D+  N  
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 720 TGQIPQGKQFNTFENSSFEGNPGLCG 745
                    F  + N +    P L  
Sbjct: 622 DCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  247 bits (633), Expect = 1e-71
 Identities = 126/644 (19%), Positives = 210/644 (32%), Gaps = 104/644 (16%)

Query: 115 LEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWI 174
            E    +      +++P ++                T +  L L+ N      +A+F+  
Sbjct: 6   HEVADCSHLKL--TQVPDDL---------------PTNITVLNLTHNQLRRLPAANFT-- 46

Query: 175 AKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLK 234
            + ++L+ L +    +    P     L  L  +N   N+L+       A    LT L L 
Sbjct: 47  -RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 235 SNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE 294
           SN ++    +       L  LDLS N        +  +L+ L+ L L +N +      E 
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 295 LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD----Q 350
            +    SL  L LS+N +   +          +   L L +  L   L      +     
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           +  L LS +++        L +   NL  ++LSYN +      S   L   L    L  N
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYN 282

Query: 411 KLQGPLP--IPPESTIHYL----------VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
            +Q      +     + YL          +S   L          L  L  L++  N + 
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA----NCTMLEFLDLGNNQIADI 514
           G+         +F    NLK + LS++    R   +        + L  L+L  N+I+ I
Sbjct: 343 GIKSN------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 515 FPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNRFSGKLPSKYFQCW 573
                  L  L+VL L  N    E+      +     +  I LS+N++   L    F   
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQEL--TGQEWRGLENIFEIYLSYNKYLQ-LTRNSFAL- 452

Query: 574 NAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNK--GIEMNYG 631
                                    +P         SLQ +             ++ +  
Sbjct: 453 -------------------------VP---------SLQRLMLRR----VALKNVDSSPS 474

Query: 632 KVSNF--LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNL--------LGHIPSSLGN 681
                  LT + LSNN +       +  L+ L  L+L  NNL         G     L  
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 682 LTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725
           L+ L  L+L +N           +L  L + D+  NNL      
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  229 bits (587), Expect = 3e-65
 Identities = 118/552 (21%), Positives = 186/552 (33%), Gaps = 93/552 (16%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
                 +    +LT  +P+ L     +T+L+L  NQLR    +     +QLT+LD+  N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
                P    +L  L+ L+L  N LS     ++      +L  L L +N++  I  N   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQL--SDKTFAFCTNLTELHLMSNSIQKIKNNP-- 116

Query: 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVN 381
                   F+   +               L  LDLS N +     G  + +   NLQ + 
Sbjct: 117 --------FVKQKN---------------LITLDLSHNGLSSTKLGTQVQLE--NLQELL 151

Query: 382 LSYNLITGFDRGSVVLL-WTDLVTLDLRSNKLQGPLPIPPES-----TIHYL-VSNNLLT 434
           LS N I       + +   + L  L+L SN+++      P        +  L ++N  L 
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKE---FSPGCFHAIGRLFGLFLNNVQLG 208

Query: 435 GKLAPWLC---NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI 491
             L   LC      S+R L LS++ LS          K     TNL M+DLS+N L    
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW----TNLTMLDLSYNNLNVVG 264

Query: 492 PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG-------EPDT 544
             S A    LE+  L  N I  +F   L  L  ++ L L+ +     I        +  +
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 545 GFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQ-DQPGQSLNYILPSSS 603
                 L  +++  N   G + S  F             LKY+       SL  +   + 
Sbjct: 325 FQWLKCLEHLNMEDNDIPG-IKSNMFT--------GLINLKYLSLSNSFTSLRTLTNETF 375

Query: 604 AYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC 663
             +    L  +                           L+ NK+      + S L  L  
Sbjct: 376 VSLAHSPLHILN--------------------------LTKNKISKIESDAFSWLGHLEV 409

Query: 664 LNLSGNNLLGHIP-SSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ 722
           L+L  N +   +       L  +  + LS N          A + SL    +    L   
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 723 IPQGKQFNTFEN 734
                 F    N
Sbjct: 470 DSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (403), Expect = 9e-41
 Identities = 73/406 (17%), Positives = 139/406 (34%), Gaps = 47/406 (11%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
             E+ D S  K+  ++P  L      N+  +NL++N +      +     + L +LD+  
Sbjct: 5   SHEVADCSHLKL-TQVPDDLPT----NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGF 58

Query: 410 NKLQGPLPIPPES-----TIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
           N +     + PE       +  L + +N L+           +L  L L  N +  +   
Sbjct: 59  NTISK---LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL- 522
                  F    NL  +DLSHN L      +      L+ L L NN+I  +    L    
Sbjct: 116 P------FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 523 -PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANK 581
              LK L L  N+       P       +L  + L++ +    L  K             
Sbjct: 170 NSSLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA------N 221

Query: 582 SQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTG 639
           + ++ +       L+    ++   +   +L  +      + +V       +  +   L  
Sbjct: 222 TSIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQ-LEY 276

Query: 640 IILSNNKLIGKIPTSISELKGLNCLNLSGN---------NLLGHIPSSLGNLTVLESLDL 690
             L  N +      S+  L  +  LNL  +         +L      S   L  LE L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 691 SNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSS 736
            +N++ G        L +L    +S++  + +    + F +  +S 
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (374), Expect = 5e-37
 Identities = 74/370 (20%), Positives = 128/370 (34%), Gaps = 43/370 (11%)

Query: 374 TGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPES-----TIHYL- 427
           T + +  + S+  +T         L T++  L+L  N+L+    +P  +      +  L 
Sbjct: 3   TVSHEVADCSHLKLTQVPDD----LPTNITVLNLTHNQLRR---LPAANFTRYSQLTSLD 55

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
           V  N ++         L  L+VL+L HN LS +        K F   TNL  + L  N +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD------KTFAFCTNLTELHLMSNSI 109

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV 547
           Q            L  LDL +N ++         L  L+ L+L  N+      E    F 
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS-SAYI 606
              L+ ++LS N+     P  +             +L  +       L   L       +
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAI---------GRLFGL-FLNNVQLGPSLTEKLCLEL 219

Query: 607 FDYSLQYIYAY--SITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCL 664
            + S++ +      ++  +    +     +  LT + LS N L      S + L  L   
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 665 NLSGNNLLGHIPSSLGNLTVLESLDLSNN---------NLSGEIPRQLAELTSLAVFDVS 715
            L  NN+      SL  L  +  L+L  +         +L          L  L   ++ 
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 716 DNNLTGQIPQ 725
           DN++ G    
Sbjct: 338 DNDIPGIKSN 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  239 bits (612), Expect = 5e-69
 Identities = 89/710 (12%), Positives = 194/710 (27%), Gaps = 152/710 (21%)

Query: 35  ERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNL 94
           +  AL +  ++L   K  S         A+WN  +E     +  GV  N   G V  L+L
Sbjct: 31  DYLALKEIWDALN-GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSL 88

Query: 95  TSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLK 154
                 G +    ++  L  LE L+L  +    ++                 +      +
Sbjct: 89  EGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGP----------KGISANMSDE 136

Query: 155 CLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
             +  + ++              ++L    + +               + T I    N +
Sbjct: 137 QKQKMRMHYQKTFVDYDP-REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
           T  +   +  L +L    + ++        +          +    Q           LK
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLK 249

Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
            L  +++++        +   L  L  + ++ ++ N      +   +             
Sbjct: 250 DLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDW------------ 295

Query: 335 SCNLKEFLDFLNDQDQLELLDLSANKIP-GKIPGWLLNVTTGNLQFVNLSYNLITGFDRG 393
                + L      ++++++ +  N +    +   L       +                
Sbjct: 296 -----QALADAPVGEKIQIIYIGYNNLKTFPVETSL-----QKM---------------- 329

Query: 394 SVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLS 453
                   L  L+   N+L+G     P                      +   L  L+L+
Sbjct: 330 ------KKLGMLECLYNQLEG---KLPA-------------------FGSEIKLASLNLA 361

Query: 454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA--NCTMLEFLDLGNNQI 511
           +N ++ +                ++ +  +HN L+  IP      + +++  +D   N+I
Sbjct: 362 YNQITEIPAN------FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEI 414

Query: 512 ADIFPSWLGTLPE-------LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
             +       L         +  + L  N+        +       L  I+L  N  +  
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP--KELFSTGSPLSSINLMGNMLTEI 472

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMV 622
             +                                           L  I      +T +
Sbjct: 473 PKNSLKDENENF-----KNTY------------------------LLTSIDLRFNKLTKL 503

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGL------NCLNLSGNNLLGHIP 676
           +         +   L GI LS N    K PT       L      N  +  GN  L   P
Sbjct: 504 SDDFRA--TTLPY-LVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 677 SSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
             +     L  L + +N++   +  ++    +++V D+ DN         
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (519), Expect = 3e-56
 Identities = 81/476 (17%), Positives = 151/476 (31%), Gaps = 73/476 (15%)

Query: 106 SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQV------PSLGNLTKLKCLELS 159
           S ++  L  L    + ++ F  ++   E     +               NL  L  +E+ 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 160 QNNFSSPHSASFSWIAKQTELSWLALAN--------INLIGEFPSWLMNLTQLTYINFDL 211
                +      +++    E+  + +A         +    +  +      ++  I    
Sbjct: 258 NCPNLTKLP---TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 212 NQLT-GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI 270
           N L   P+   L  + +L +L    NQL G LP+  GS  +L +L+L+ NQ      +  
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFC 373

Query: 271 SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF 330
              +++E L    N L   +        +  +  +  S N +  +            F  
Sbjct: 374 GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN--------FDP 424

Query: 331 LGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF 390
           L                   +  ++LS N+I           +   L  +NL  N++T  
Sbjct: 425 LDPTPFKGI----------NVSSINLSNNQISKFPKELFSTGS--PLSSINLMGNMLTEI 472

Query: 391 DRGSVVLL------WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNL 444
            + S+            L ++DLR NKL     +  +                      L
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK---LSDDFRA-----------------TTL 512

Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
             L  +DLS+N  S   P    NS   K        D   N      P  +  C  L  L
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
            +G+N I  +        P + VL ++ N              + +  +  L +++
Sbjct: 572 QIGSNDIRKVNEK---ITPNISVLDIKDNPNISID--LSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (451), Expect = 3e-47
 Identities = 72/450 (16%), Positives = 145/450 (32%), Gaps = 80/450 (17%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFS---------- 141
            N   +  Y + +      +L+ L  + + +     +K+P+ +  L              
Sbjct: 230 ENSEYAQQYKTEDLK--WDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGI 286

Query: 142 ---------GQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192
                      +       K++ + +  NN  +      + + K  +L  L      L G
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEG 344

Query: 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS-QIGSLTQ 251
           + P+   +  +L  +N   NQ+T    N+     ++  LS   N+L+         S++ 
Sbjct: 345 KLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 252 LTALDLSCNQFQG-------PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIV 304
           ++A+D S N+          P+  +  +   +  ++L +N +S     +EL      L  
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF--PKELFSTGSPLSS 461

Query: 305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK 364
           + L  N L+ I +N+                 N             L  +DL  NK+  K
Sbjct: 462 INLMGNMLTEIPKNS--------LKDENENFKNTY----------LLTSIDLRFNKL-TK 502

Query: 365 IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTI 424
           +       T   L  ++LSYN  + F      L  + L    +R+ +             
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQRD------------ 548

Query: 425 HYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
                 N    +    +    SL  L +  N +  V  +   N         + ++D+  
Sbjct: 549 ---AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---------ISVLDIKD 596

Query: 485 NLLQGRIPRSLANCTMLEFLDLGNNQIADI 514
           N         +          L  ++  DI
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (320), Expect = 2e-30
 Identities = 55/377 (14%), Positives = 112/377 (29%), Gaps = 48/377 (12%)

Query: 363 GKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPES 422
           G  PG  LN + G +  ++L     +G    ++  L T+L  L L S+  +    +    
Sbjct: 70  GAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPK 127

Query: 423 TIHYLVS----NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLK 478
            I   +S      +       ++         DL  + ++   PQ  S  K  +      
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS-DPQQKSIKKSSRITLKDT 186

Query: 479 MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE 538
            I    N +   + +++   T L    +GN+                     ++ + +  
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKT 240

Query: 539 IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI 598
                       L  +++ +     KLP+                           +  I
Sbjct: 241 E--DLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--------------------PEMQLI 278

Query: 599 LPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-GKIPTSISE 657
                    + +     +      +     +       +  I +  N L    + TS+ +
Sbjct: 279 ---------NVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQK 328

Query: 658 LKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDN 717
           +K L  L    N L G +P+  G+   L SL+L+ N ++            +     + N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 718 NLTGQIPQGKQFNTFEN 734
            L   IP      +   
Sbjct: 388 KLKY-IPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 1e-22
 Identities = 41/312 (13%), Positives = 81/312 (25%), Gaps = 58/312 (18%)

Query: 433 LTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP 492
             G       N N  + LD+      GV     SN         +  + L      GR+P
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGA-QPGV--SLNSN-------GRVTGLSLEGFGASGRVP 98

Query: 493 RSLANCTMLEFLDLGNNQI----ADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
            ++   T LE L LG++          P  +      +        +     + D    F
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 549 PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD 608
             L    ++ +     +                                I   S+     
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRIT--------------------LKDTQIGQLSN----- 193

Query: 609 YSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSG 668
                    +IT V+K +     +++  L    + N+  + +              N   
Sbjct: 194 ---------NITFVSKAV----MRLTK-LRQFYMGNSPFVAENICEA-----WENENSEY 234

Query: 669 NNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQ 728
                       NL  L  +++ N     ++P  L  L  + + +V+ N           
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 729 FNTFENSSFEGN 740
           +    ++     
Sbjct: 295 WQALADAPVGEK 306

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  222 bits (569), Expect = 3e-63
 Identities = 102/525 (19%), Positives = 180/525 (34%), Gaps = 57/525 (10%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS----------FS 141
           L+L+   I        +   L HL  L L  N             LSS           +
Sbjct: 57  LDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLA 113

Query: 142 GQVP-SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN 200
                 +G+L  LK L ++ N   S     +   +  T L  L L++  +   + + L  
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 201 LTQLTYINFDL----NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQ-IGSLTQLTAL 255
           L Q+  +N  L    N +    P     +  L  L+L++N     +    I  L  L   
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 256 DLSCNQFQG---PVPSSISELKRLEYLDLHSNNLSGNVYIEELLP----KLKSLIVLFLS 308
            L   +F+          S L+ L  L +    L+   Y  + +      L ++    L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 309 ANNLSLITRNTVNIRLQ------NKFVFLGLASCNLKEFLDFLNDQD----------QLE 352
           +  +  +   + N   Q       KF           + L F +++            LE
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 353 LLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKL 412
            LDLS N +  K      +  T +L++++LS+N +       + L    L  LD + + L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNL 408

Query: 413 QGPLPIPPESTIHYLV----SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468
           +         ++  L+    S+             L+SL VL ++ N             
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----P 463

Query: 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVL 528
            IF    NL  +DLS   L+   P +  + + L+ L++ +N    +       L  L+VL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 529 MLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573
               N       + +       L  ++L+ N F+     + F  W
Sbjct: 524 DYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (548), Expect = 2e-60
 Identities = 97/609 (15%), Positives = 170/609 (27%), Gaps = 107/609 (17%)

Query: 135 MNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEF 194
           +N       +P        K L+LS N      S SF                       
Sbjct: 17  LNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFF---------------------- 49

Query: 195 PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
                +  +L  ++    ++         +L+ L+ L L  N ++         L+ L  
Sbjct: 50  -----SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 255 LDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314
           L              I  LK L+ L++  N +     + E    L +L  L LS+N +  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 315 ITRNTVN--IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNV 372
           I    +    ++    + L L+   +         + +L  L L  N     +    +  
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ- 222

Query: 373 TTGNLQFVNLSYNLITGFDRGSVVLLWT--DLVTLDLRSNKLQGPLPIPPESTIHYLVSN 430
               L+   L                     L  L +   +L                  
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA---------------YL 267

Query: 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC---------LSNSKI--FKNATNLKM 479
           +     +      L ++    L    +  V             L N K   F       +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA--DIFPSWLGTLPELKVLMLQFNRFHG 537
             L+    +G    S  +   LEFLDL  N ++              LK L L FN    
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 538 EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY 597
                       +L  +D  H+          F     +   +   + +           
Sbjct: 388 M---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD---ISHTH------TRV 435

Query: 598 ILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKI-PTSIS 656
                                           +  +S+ L  + ++ N       P   +
Sbjct: 436 AFNGI---------------------------FNGLSS-LEVLKMAGNSFQENFLPDIFT 467

Query: 657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716
           EL+ L  L+LS   L    P++  +L+ L+ L++S+NN           L SL V D S 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 717 NNLTGQIPQ 725
           N++     Q
Sbjct: 528 NHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  205 bits (524), Expect = 3e-57
 Identities = 127/661 (19%), Positives = 216/661 (32%), Gaps = 122/661 (18%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147
               L+L+ + +      S S F    L+ L L+        I               + 
Sbjct: 29  STKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEI--QTIEDG------------AY 72

Query: 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYI 207
            +L+ L  L L+ N   S    +FS +   + L  L     NL       + +L  L  +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 208 NFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA----LDLSCNQF 262
           N   N +    +P + +NL  L  L L SN+++    + +  L Q+      LDLS N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI 322
               P +  E+ RL  L L +N  S NV ++  +  L  L V  L          N  N+
Sbjct: 190 NFIQPGAFKEI-RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFR----NEGNL 243

Query: 323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNL 382
              +K    GL +  ++EF        +L  LD   + I   +   L      N+   +L
Sbjct: 244 EKFDKSALEGLCNLTIEEF--------RLAYLDYYLDDIID-LFNCL-----TNVSSFSL 289

Query: 383 SYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC 442
               I      S          L+L + K      +  +S      ++N      +    
Sbjct: 290 VSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EV 344

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
           +L SL  LDLS N LS     C S S      T+LK +DLS N +   +  +      LE
Sbjct: 345 DLPSLEFLDLSRNGLSFK--GCCSQS--DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 503 FLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
            LD  ++ +  +   S   +L  L  L +                    L ++ ++ N F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSF 457

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM 621
                   F     +   +   L   Q      L  + P++   +   SLQ +       
Sbjct: 458 QENFLPDIFTELRNLTFLD---LSQCQ------LEQLSPTAFNSLS--SLQVLN------ 500

Query: 622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGN 681
                               +S+N            L  L  L+ S N+++      L +
Sbjct: 501 --------------------MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 682 L-TVLESLDLSNNNLSG--------------------------EIPRQLAELTSLAVFDV 714
             + L  L+L+ N+ +                             P     +  +   ++
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNI 599

Query: 715 S 715
           +
Sbjct: 600 T 600

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (581), Expect = 3e-63
 Identities = 117/594 (19%), Positives = 207/594 (34%), Gaps = 89/594 (14%)

Query: 35  ERSALLQFKESLTI--NKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKL 92
           +  AL    E+L     +  S   +      +WN  +E        GV  + + G V  L
Sbjct: 270 DYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGL 328

Query: 93  NLTSSCIYGSINSSSSLFHLRHLEWLSLADNN-------FNYSKIPSEIMNLSSFSGQVP 145
           +L      G +    ++  L  L+ LS   ++       F   ++  ++        ++ 
Sbjct: 329 SLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 146 ----SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI-NLIGEFPSWLMN 200
                L    +L   +L Q+  +            +  L    + N+ N I      +  
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 201 LTQLTYINFDLNQLTGP-------------------IPNWLANLNRLTILSLKSNQLRGY 241
           LT+L  I F  +  T                          +NL  LT + L +      
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 242 LPSQIGSLTQLTALDLSCNQFQGP---------VPSSISELKRLEYLDLHSNNLSGNVYI 292
           LP  +  L +L +L+++CN+             +        +++   +  NNL      
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA 565

Query: 293 EELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEF-LDFLNDQDQL 351
              L K+  L +L    N +  +     N++L +    L L    ++E   DF    DQ+
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD----LKLDYNQIEEIPEDFCAFTDQV 621

Query: 352 ELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL----WTDLVTLDL 407
           E L  S NK+   IP      +   +  V+ SYN I    R     +      +  T+ L
Sbjct: 622 EGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 408 RSNKLQGPLPIPPE-----STIHYL-VSNNLLT-------GKLAPWLCNLNSLRVLDLSH 454
             N++Q     P E     S I  + +SNNL+T               N   L  +DL  
Sbjct: 681 SYNEIQK---FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDL------GN 508
           N L+      LS+         L  +D+S+N      P    N + L+   +        
Sbjct: 738 NKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 509 NQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           N+I   +P+ + T P L  L +  N    ++   +   + P+L I+D++ N   
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKV--DEK--LTPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  191 bits (486), Expect = 8e-51
 Identities = 86/544 (15%), Positives = 161/544 (29%), Gaps = 74/544 (13%)

Query: 207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266
            N +L+         L N  R+T LSL     +G +P  IG LT+L  L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 267 PSSISELKRLEYLDLHSNNLSGNVYIEEL--LPKLKSLIVLFLSANNLSLITRNTVNIRL 324
                E    +  +   + +  +     L    +L    +L  + N    +     + R+
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 325 QNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSY 384
             K   +G  +  +      +    +L+++  + +                + +  N  Y
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-------AVDWEDANSDY 476

Query: 385 NLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-------VSNNLLTG-- 435
                 +  S   L  DL  ++L +      LP      ++ L       ++ N      
Sbjct: 477 AKQYENEELSWSNL-KDLTDVELYNCPNMTQLP----DFLYDLPELQSLNIACNRGISAA 531

Query: 436 -------KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
                  +LA        +++  + +N L          S   +    L ++D  HN + 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKV- 585

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
            R   +      L  L L  NQI +I   +     +++ L    N+    I         
Sbjct: 586 -RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643

Query: 549 PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD 608
             +  +D S+N+             +  K  N S +          +        A    
Sbjct: 644 YVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTV----TLSYNEIQKFPTELFATG-- 696

Query: 609 YSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSG 668
             +  I                   +N +T I       +     +      L  ++L  
Sbjct: 697 SPISTIILS----------------NNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 669 NNLLGHIPSSL--GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVF------DVSDNNLT 720
           N  L  +        L  L ++D+S N  S   P Q    + L  F      D   N + 
Sbjct: 738 NK-LTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 721 GQIP 724
            Q P
Sbjct: 796 RQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (413), Expect = 1e-41
 Identities = 68/432 (15%), Positives = 135/432 (31%), Gaps = 68/432 (15%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            + L +      +     L+ L  L+ L++A N            + +  +         
Sbjct: 495 DVELYNCPNMTQL--PDFLYDLPELQSLNIACNRG--ISAAQLKADWTRLA---DDEDTG 547

Query: 151 TKLKCLELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINF 209
            K++   +  NN    P SAS     K  +L  L   + N +    +      +LT +  
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQ---KMVKLGLLDCVH-NKVRHLEA-FGTNVKLTDLKL 602

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS--QIGSLTQLTALDLSCNQFQG--- 264
           D NQ+     ++ A  +++  L    N+L+  +P+     S+  + ++D S N+      
Sbjct: 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 265 --PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI 322
                    +      + L  N +    +  EL      +  + LS N ++ I       
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNNLMTSIP------ 713

Query: 323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNL 382
             +N          N             L  +DL  NK+   +       T   L  +++
Sbjct: 714 --ENSLKPKDGNYKNTY----------LLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDV 760

Query: 383 SYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC 442
           SYN  + F    +    + L    +R  +                   N +  +    + 
Sbjct: 761 SYNCFSSFPTQPLNS--SQLKAFGIRHQRD---------------AEGNRILRQWPTGIT 803

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
              SL  L +  N +  V  +             L ++D++ N        S+       
Sbjct: 804 TCPSLIQLQIGSNDIRKVDEKLT---------PQLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 503 FLDLGNNQIADI 514
              L  ++  DI
Sbjct: 855 MYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  102 bits (256), Expect = 2e-22
 Identities = 42/299 (14%), Positives = 82/299 (27%), Gaps = 52/299 (17%)

Query: 438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN 497
                N N  + LD+  +     L           N   +  + L+    +GR+P ++  
Sbjct: 296 TIHSLNWNFNKELDMWGDQPGVDLD----------NNGRVTGLSLAGFGAKGRVPDAIGQ 345

Query: 498 CTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS 557
            T L+ L  G +        +        +   + +R      +        +L + DL 
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKMFLDYDQRLNLSDLL 404

Query: 558 HNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD-YSLQYIYA 616
            +  +             +K   K     ++D    +L   +   S  I     LQ IY 
Sbjct: 405 QDAINRN---------PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY- 454

Query: 617 YSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP 676
                                     +N+       T  +        N        +  
Sbjct: 455 -------------------------FANSPF-----TYDNIAVDWEDANSDYAKQYENEE 484

Query: 677 SSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENS 735
            S  NL  L  ++L N     ++P  L +L  L   +++ N           +    + 
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 28/179 (15%)

Query: 104 NSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNF 163
               +  +   L  + L  N    + +  +                L  L  +++S N F
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKL--TSLSDDF-----------RATTLPYLSNMDVSYNCF 765

Query: 164 SS-PHSASFSWIAKQTELSWLAL------ANINLIGEFPSWLMNLTQLTYINFDLNQLTG 216
           SS P           ++L    +          ++ ++P+ +     L  +    N +  
Sbjct: 766 SSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
            +   L    +L IL +  N       + +    +     L  ++ Q         ++R
Sbjct: 821 -VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (560), Expect = 4e-62
 Identities = 112/596 (18%), Positives = 206/596 (34%), Gaps = 67/596 (11%)

Query: 136 NLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFP 195
            L+   G +P+       +CLE S N   +  + +FS   +   L++L L    +     
Sbjct: 23  GLNEIPGTLPNS-----TECLEFSFNVLPTIQNTTFS---RLINLTFLDLTRCQIYWIHE 74

Query: 196 SWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTAL 255
               +  +L  +    N L       L+    L  L      +       + +   L +L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 256 DLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL--IVLFLSANNLS 313
            L  N             ++L+ LD  +N +      +E +  L+    + L L+ N+++
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGNDIA 192

Query: 314 LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ-DQLELLDLSANKIPGKIPGWLLNV 372
            I     +     + +  G     L  F    N     L L            P     +
Sbjct: 193 GIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 373 TTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQG-PLPIPPESTIHYL-VSN 430
              +++ +NL  +        +     + L  LDL +  L   P  +   ST+  L +S 
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ-- 488
           N           N  SL  L +  N     L      +   +N  NL+ +DLSH+ ++  
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELG-----TGCLENLENLRELDLSHDDIETS 365

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV- 547
                 L N + L+ L+L  N+   +        P+L++L L F R   +  +  + F  
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK--DAQSPFQN 423

Query: 548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN--KSQLKYMQDQPGQSLNYILPSSSAY 605
              L++++LSH+        + F    A++  N   +       Q   SL   L      
Sbjct: 424 LHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-LGR---- 477

Query: 606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLN 665
                                          L  ++LS   L      + + LK +N ++
Sbjct: 478 -------------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 666 LSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721
           LS N L      +L +L  +  L+L++N++S  +P  L  L+     ++  N L  
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  199 bits (508), Expect = 5e-55
 Identities = 102/506 (20%), Positives = 173/506 (34%), Gaps = 44/506 (8%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-----------F 140
           L LT++ +       ++L   + L+ L       + S     + N  +            
Sbjct: 86  LVLTANPLIFMA--ETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHIS 142

Query: 141 SGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN 200
           S ++P      KLK L+   N          S + + T LS L L   N I        +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNG-NDIAGIEPGAFD 200

Query: 201 LTQLTYINFDLNQLTGPIPNWLAN--LNRLTILSLKSNQLRGYLPSQIGSL--TQLTALD 256
                 +NF   Q    I   L N  +  L + + +        P+    L    + +++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316
           L  + F     ++      L+ LDL + +LS    +   L  L +L  L LSAN    + 
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 317 RNTVNIRLQNKFVFLGLASCNLKEFL--DFLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
           + +           L +     +  L    L + + L  LDLS + I       L     
Sbjct: 318 QIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 375 GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV------ 428
            +LQ +NLSYN        +       L  LDL   +L+       +S    L       
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKV---KDAQSPFQNLHLLKVLN 431

Query: 429 -SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
            S++LL          L +L+ L+L  N       Q  +     +    L+++ LS   L
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN---SLQTLGRLEILVLSFCDL 488

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV 547
                 +  +  M+  +DL +N++       L  L  +  L L  N     +  P    +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL--PSLLPI 545

Query: 548 FPKLRIIDLSHNRFSGKLPSKYFQCW 573
             + R I+L  N       + YF  W
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (270), Expect = 2e-24
 Identities = 61/268 (22%), Positives = 107/268 (39%), Gaps = 27/268 (10%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            L++  +     +  +  L +L +L  L L+ ++   S   +              L NL
Sbjct: 329 HLSIKGNTKRLEL-GTGCLENLENLRELDLSHDDIETSDCCNL------------QLRNL 375

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINF 209
           + L+ L LS N   S  + +F    +  +L  L LA   L   +  S   NL  L  +N 
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFK---ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS---LTQLTALDLSCNQFQGPV 266
             + L          L  L  L+L+ N        +  S   L +L  L LS        
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 267 PSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQN 326
             + + LK + ++DL  N L+ +    E L  LK +  L L++N++S+I  + + I  Q 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSS--SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549

Query: 327 KFVFLG----LASCNLKEFLDFLNDQDQ 350
           + + L       +C+   FL++  +  Q
Sbjct: 550 RTINLRQNPLDCTCSNIYFLEWYKENMQ 577

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.7 bits (223), Expect = 1e-18
 Identities = 46/238 (19%), Positives = 79/238 (33%), Gaps = 24/238 (10%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIM--------------NL 137
           L+L+   I  S   +  L +L HL+ L+L+ N      + +E                 L
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRL 412

Query: 138 SSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL---IGEF 194
                Q P   NL  LK L LS +         F  +     L  L L   +      + 
Sbjct: 413 KVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGL---PALQHLNLQGNHFPKGNIQK 468

Query: 195 PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
            + L  L +L  +      L+    +   +L  +  + L  N+L       +  L  +  
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY- 527

Query: 255 LDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
           L+L+ N     +PS +  L +   ++L  N L         L   K  +       + 
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDT 585

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (529), Expect = 9e-61
 Identities = 80/322 (24%), Positives = 120/322 (37%), Gaps = 46/322 (14%)

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH-NLL 487
            N    G L         +  LDLS   L    P  + +S    N   L  + +   N L
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP--IPSS--LANLPYLNFLYIGGINNL 89

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV 547
            G IP ++A  T L +L + +  ++   P +L  +  L  L   +N   G +  P +   
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISS 147

Query: 548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIF 607
            P L  I    NR SG +P  Y            S+           L   +P +     
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR---------NRLTGKIPPT---FA 195

Query: 608 DYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLS 667
           + +L ++                           LS N L G         K    ++L+
Sbjct: 196 NLNLAFVD--------------------------LSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 668 GNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK 727
            N+L   +   +G    L  LDL NN + G +P+ L +L  L   +VS NNL G+IPQG 
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 728 QFNTFENSSFEGNPGLCGKPLS 749
               F+ S++  N  LCG PL 
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (498), Expect = 2e-56
 Identities = 88/366 (24%), Positives = 146/366 (39%), Gaps = 89/366 (24%)

Query: 29  QLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCC--SWDGVKCNEDT 86
           +LC+  ++ ALLQ K+ L                +SW       DCC  +W GV C+ DT
Sbjct: 1   ELCNPQDKQALLQIKKDL----------GNPTTLSSWL---PTTDCCNRTWLGVLCDTDT 47

Query: 87  --GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQV 144
               V  L+L+   +       SSL +L +L +L +   N     IP  I          
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI---------- 97

Query: 145 PSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQL 204
                LT+L  L ++  N S                           G  P +L  +  L
Sbjct: 98  ---AKLTQLHYLYITHTNVS---------------------------GAIPDFLSQIKTL 127

Query: 205 TYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQL-TALDLSCNQFQ 263
             ++F  N L+G +P  +++L  L  ++   N++ G +P   GS ++L T++ +S N+  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 264 GPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIR 323
           G +P + + L  L ++DL  N L G+     L    K+   + L+ N+L           
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSL----------- 233

Query: 324 LQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLS 383
                      + +L +     N    L  LDL  N+I G +P  L  +    L  +N+S
Sbjct: 234 -----------AFDLGKVGLSKN----LNGLDLRNNRIYGTLPQGLTQLK--FLHSLNVS 276

Query: 384 YNLITG 389
           +N + G
Sbjct: 277 FNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (432), Expect = 3e-47
 Identities = 77/385 (20%), Positives = 134/385 (34%), Gaps = 96/385 (24%)

Query: 193 EFPSWLMNLTQL----TYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG--YLPSQI 246
           +    L N T L       +       G + +      R+  L L    L     +PS +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 247 GSLTQLTALDLS-CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL 305
            +L  L  L +   N   GP+P +I++L +L YL +   N+SG   I + L ++K+L+ L
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--IPDFLSQIKTLVTL 130

Query: 306 FLSANNLS-LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK 364
             S N LS  +  +              ++S               L  +    N+I G 
Sbjct: 131 DFSYNALSGTLPPS--------------ISSLP------------NLVGITFDGNRISGA 164

Query: 365 IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTI 424
           IP    + +      + +S N +TG    +   L  +L  +DL  N L+G          
Sbjct: 165 IPDSYGSFS-KLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDAS------- 214

Query: 425 HYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
                             +  + + + L+ N L+  L +          + NL  +DL +
Sbjct: 215 --------------VLFGSDKNTQKIHLAKNSLAFDLGK-------VGLSKNLNGLDLRN 253

Query: 485 NLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDT 544
           N + G +P+ L     L  L++                         FN   GEI  P  
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVS------------------------FNNLCGEI--PQG 287

Query: 545 GFVFPKLRIIDLSHNRF--SGKLPS 567
           G    +  +   ++N+      LP+
Sbjct: 288 G-NLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 1e-45
 Identities = 76/347 (21%), Positives = 116/347 (33%), Gaps = 98/347 (28%)

Query: 172 SWIAKQTELSWLALANINLIGEF--PSWLMNLTQLTYINF-DLNQLTGPIPNWLANLNRL 228
               +   ++ L L+ +NL   +  PS L NL  L ++    +N L GPIP  +A L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
             L +    + G +P  +  +  L  LD S N   G +P SIS L  L  +    N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 289 NVYIEELLPKLKSLI-VLFLSANNLSLITRNTVNIRLQNKFVFLG-----LASCNLKEFL 342
              I +       L   + +S N L+                  G      A+ NL    
Sbjct: 164 A--IPDSYGSFSKLFTSMTISRNRLT------------------GKIPPTFANLNLAF-- 201

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDL 402
                      +DLS N + G           G+ +                      + 
Sbjct: 202 -----------VDLSRNMLEGDASVLF-----GSDK----------------------NT 223

Query: 403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
             + L  N L   L                        +    +L  LDL +N + G LP
Sbjct: 224 QKIHLAKNSLAFDL----------------------GKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
           Q L+          L  +++S N L G IP+   N    +     NN
Sbjct: 262 QGLT------QLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE--IPRQLAELTSLAVFDVSD-NNLT 720
            +      LG +  +      + +LDLS  NL     IP  LA L  L    +   NNL 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 721 GQIP 724
           G IP
Sbjct: 91  GPIP 94

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS----------F 140
           K++L  + +   +     +   ++L  L L +N   Y  +P  +  L             
Sbjct: 225 KIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 141 SGQVPSLGNLTKLKCLELSQNN 162
            G++P  GNL +      + N 
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNK 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (515), Expect = 5e-56
 Identities = 113/589 (19%), Positives = 189/589 (32%), Gaps = 81/589 (13%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
           +  K ++LS N      S SFS     +EL WL L+   +          L  L+ +   
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFS---NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPSS 269
            N +    P   + L  L  L     +L       IG L  L  L+++ N      +P+ 
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 270 ISELKRLEYLDLHSNNLSG--NVYIEELLPKLKSLIVLFLSANNLSLITRNT-VNIRLQN 326
            S L  L ++DL  N +       ++ L    +  + L +S N +  I       I+L  
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH- 207

Query: 327 KFVFLGLASCNLKEFL--DFLNDQDQLELLDLSANKIPGKI------PGWLLNVTTGNLQ 378
               L L        +    L +   L +  L   +   +       P  +  +    + 
Sbjct: 208 ---ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKL 437
              L+Y      D      L  ++  + L    ++    +P       L +    L    
Sbjct: 265 EFRLTYTNDFSDDIVKFHCL-ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN 497
                +L  L+ L L+ N  S                 +L  +DLS N L      S ++
Sbjct: 324 T---LDLPFLKSLTLTMNKGSISFK--------KVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 498 --CTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIID 555
                L  LDL  N    I  +    L EL+ L  Q +     + E        KL  +D
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLD 430

Query: 556 LSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL--NYILPSSSAYIFD--YSL 611
           +S+           F           + L  +       +  N    ++ + +F    +L
Sbjct: 431 ISYTNTKI-DFDGIFL--------GLTSLNTL------KMAGNSFKDNTLSNVFANTTNL 475

Query: 612 QYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNL 671
            ++                           LS  +L          L  L  LN+S NNL
Sbjct: 476 TFLD--------------------------LSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 672 LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
           L    S    L  L +LD S N +            SLA F++++N++ 
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (485), Expect = 7e-52
 Identities = 82/486 (16%), Positives = 150/486 (30%), Gaps = 49/486 (10%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            L    + +    +    +  L  L+ L++A N  +  K+P+                NL
Sbjct: 108 NLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPA-------------YFSNL 152

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAK-QTELSWLALANINLIGEFPSWLMNLTQLTYINF 209
           T L  ++LS N   +       ++ +       L ++  N I           +L  +  
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLHELTL 211

Query: 210 DLNQLTGPIP-NWLANLNRLTILSLKSNQLRGYLPSQIGSLT--------QLTALDLSCN 260
             N  +  I    L NL  L +  L   + +     +I   +         +    L+  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
                       L  +  + L   ++         +PK      L +    L       +
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLED----VPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
              L+     L L           +     L  LDLS N +         ++ T +L+ +
Sbjct: 328 P-FLK----SLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV----SNNLLTGK 436
           +LS+N         + L   +L  LD + + L+         ++  L+    S       
Sbjct: 382 DLSFNGAIIMSANFMGL--EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA 496
                  L SL  L ++ N              +F N TNL  +DLS   L+        
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSN-----VFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL 556
               L+ L++ +N +  +  S    L  L  L   FNR                L   +L
Sbjct: 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK--GILQHFPKSLAFFNL 552

Query: 557 SHNRFS 562
           ++N  +
Sbjct: 553 TNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (447), Expect = 8e-47
 Identities = 99/487 (20%), Positives = 157/487 (32%), Gaps = 60/487 (12%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
            S S  +   L+WL L+        I  +            +   L  L  L L+ N   
Sbjct: 48  KSYSFSNFSELQWLDLSRCEI--ETIEDK------------AWHGLHHLSNLILTGNPIQ 93

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLA 223
           S    SFS +   T L  L      L       +  L  L  +N   N +    +P + +
Sbjct: 94  SFSPGSFSGL---TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTA----LDLSCNQFQGPVPSSISELKRLEYL 279
           NL  L  + L  N ++    + +  L +       LD+S N     +     +  +L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHEL 209

Query: 280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLK 339
            L  N  S N+ ++  L  L  L V  L          +  N+ +    +  GL    + 
Sbjct: 210 TLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFK----DERNLEIFEPSIMEGLCDVTID 264

Query: 340 EF-LDFLNDQD----------QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388
           EF L + ND             +  + L+   I                Q +++    + 
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF----KWQSLSIIRCQLK 320

Query: 389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLT--GKLAPWLCNLN 445
            F           L +L L  NK           ++ YL +S N L+  G  +      N
Sbjct: 321 QFPTLD----LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS-LANCTMLEFL 504
           SLR LDLS N    +       S  F     L+ +D  H+ L+     S   +   L +L
Sbjct: 377 SLRHLDLSFNGAIIM-------SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
           D+        F      L  L  L +  N F       +       L  +DLS  +    
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQLEQ- 487

Query: 565 LPSKYFQ 571
           +    F 
Sbjct: 488 ISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  108 bits (272), Expect = 1e-24
 Identities = 54/256 (21%), Positives = 84/256 (32%), Gaps = 26/256 (10%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
             + S     L  L +L L+ N             LS       S      L+ L+LS N
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNA------------LSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFP--SWLMNLTQLTYINFDLNQLTGPIP 219
                 +          EL  L   + + +      S  ++L +L Y++           
Sbjct: 387 GAIIMSA----NFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEY 278
                L  L  L +  N  +    S +  + T LT LDLS  Q +         L RL+ 
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLG----LA 334
           L++  NNL           +L SL  L  S N +        +      F  L       
Sbjct: 502 LNMSHNNLLFL--DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

Query: 335 SCNLKEFLDFLNDQDQ 350
            C  ++FL ++ +Q Q
Sbjct: 560 ICEHQKFLQWVKEQKQ 575

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 3e-20
 Identities = 49/234 (20%), Positives = 86/234 (36%), Gaps = 18/234 (7%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-----FSG---- 142
           L+L+ + +  S   S S      L  L L+ N      + +  M L       F      
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLK 412

Query: 143 ---QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS-WL 198
              +  +  +L KL  L++S  N        F      T L+ L +A  +      S   
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL---GLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 199 MNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS 258
            N T LT+++    QL          L+RL +L++  N L     S    L  L+ LD S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
            N+ +          K L + +L +N+++     ++ L  +K      ++   +
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (470), Expect = 8e-49
 Identities = 102/532 (19%), Positives = 181/532 (34%), Gaps = 47/532 (8%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLS 258
            L     +    N +     +    L +L +L L S      +  +   +L  L  LDL 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRN 318
            ++     P +   L  L  L L+   LS  V  +     LK+L  L LS N +  +  +
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 319 TVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ 378
                      F  L S               L+ +D S+N+I       L  +    L 
Sbjct: 142 PS---------FGKLNS---------------LKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLA 438
           F +L+ N +                 + L    + G       +       +N ++   A
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG----WTVDITGNFSNAISKSQA 233

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498
             L   + +       + +        +        ++++ +DLSH  +     R     
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLA----RSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
             L+ L+L  N+I  I       L  L+VL L +N    E+      +  PK+  IDL  
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-EL-YSSNFYGLPKVAYIDLQK 347

Query: 559 NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI----FDYSLQYI 614
           N  +  +  + F+    ++  +             S+  I  S +  +     + +   I
Sbjct: 348 NHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 615 YAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLG 673
           +     + N  I     +V + L  +IL+ N+          SE   L  L L  N L  
Sbjct: 407 HLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 674 HIPSSL-----GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
              + L       L+ L+ L L++N L+   P   + LT+L    ++ N LT
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  182 bits (464), Expect = 5e-48
 Identities = 128/613 (20%), Positives = 217/613 (35%), Gaps = 80/613 (13%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEF-PSWLMNL 201
           QVP    L   + L LS N   +  ++SF       +L  L L +             NL
Sbjct: 18  QVPQ--VLNTTERLLLSFNYIRTVTASSFP---FLEQLQLLELGSQYTPLTIDKEAFRNL 72

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL--PSQIGSLTQLTALDLSC 259
             L  ++   +++    P+    L  L  L L    L   +       +L  LT LDLS 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 260 NQFQG-PVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-KLKSLIVLFLSANNLSLITR 317
           NQ +   +  S  +L  L+ +D  SN +   V   EL P + K+L    L+AN+L     
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRV- 190

Query: 318 NTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL 377
           +    +  N F  + L      E LD   +   +++    +N I       L+     ++
Sbjct: 191 SVDWGKCMNPFRNMVL------EILDVSGNGWTVDITGNFSNAISKSQAFSLILAH--HI 242

Query: 378 QFVNLSYNLITGFDRGSVVLLW-TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGK 436
                 ++ I   D+ +   L  + +  LDL    +     +                  
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRV-------------- 285

Query: 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA 496
                  L  L+VL+L++N ++ +        + F    NL++++LS+NLL      +  
Sbjct: 286 ----FETLKDLKVLNLAYNKINKI------ADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL 556
               + ++DL  N IA I       L +L+ L L+ N          T    P +  I L
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-------TIHFIPSIPDIFL 388

Query: 557 SHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYA 616
           S N+    LP               + L ++ +   ++L+ +            LQ +  
Sbjct: 389 SGNKLV-TLPKINLT----------ANLIHLSENRLENLDILYFLLRV----PHLQILI- 432

Query: 617 YSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISE-----LKGLNCLNLSGNNL 671
            +    +          +  L  + L  N L     T +       L  L  L L+ N L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 672 LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNT 731
               P    +LT L  L L++N L+      L    +L + D+S N L    P    F +
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL--APNPDVFVS 548

Query: 732 FENSSFEGNPGLC 744
                   N  +C
Sbjct: 549 LSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  168 bits (428), Expect = 1e-43
 Identities = 92/497 (18%), Positives = 156/497 (31%), Gaps = 85/497 (17%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151
           L L    +  ++       +L+ L  L L+ N      +              PS G L 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-------------PSFGKLN 148

Query: 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ------LT 205
            LK ++ S N            + +   LS+ +LA  +L                   L 
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207

Query: 206 YINFDLNQLTGPIPN------------WLANLNRLTILSLKSNQLRGYLPSQIGSL--TQ 251
            ++   N  T  I               L   + +       + ++    +    L  + 
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267

Query: 252 LTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLSAN 310
           +  LDLS              LK L+ L+L  N ++    I +     L +L VL LS N
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYN 324

Query: 311 NLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLL 370
            L  +  +           F GL                 +  +DL  N I         
Sbjct: 325 LLGELYSSN----------FYGLPK---------------VAYIDLQKNHIAIIQDQTFK 359

Query: 371 NVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSN 430
            +    LQ ++L  N +T             +  + L  NKL     I   + + +L  N
Sbjct: 360 FLE--KLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411

Query: 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR 490
            L    +  +L  +  L++L L+ N  S                 +L+ + L  N+LQ  
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-----PSENPSLEQLFLGENMLQLA 466

Query: 491 I-----PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG 545
                        + L+ L L +N +  + P     L  L+ L L  NR    +      
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR----LTVLSHN 522

Query: 546 FVFPKLRIIDLSHNRFS 562
            +   L I+D+S N+  
Sbjct: 523 DLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (359), Expect = 5e-35
 Identities = 91/484 (18%), Positives = 163/484 (33%), Gaps = 93/484 (19%)

Query: 90  IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGN 149
           +  N   S +        + F    LE L ++ N +  +   +   + +    Q  SL  
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW--TVDITGNFSNAISKSQAFSLIL 238

Query: 150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINF 209
              +       +N   P   +F+ +A+ + +  L L++  +          L  L  +N 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269
             N++          L+ L +L+L  N L     S    L ++  +DL  N        +
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 270 ISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFV 329
              L++L+ LDL  N L+        +  + S+  +FLS N L                 
Sbjct: 358 FKFLEKLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKLV---------------- 394

Query: 330 FLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG 389
                                L  ++L+AN I                   +LS N +  
Sbjct: 395 --------------------TLPKINLTANLI-------------------HLSENRLEN 415

Query: 390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRV 449
            D    +L    L  L L  N+         + T                      SL  
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSS---CSGDQTPS-----------------ENPSLEQ 455

Query: 450 LDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
           L L  N L       L    +F+  ++L+++ L+HN L    P   ++ T L  L L +N
Sbjct: 456 LFLGENMLQLAWETELCWD-VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514

Query: 510 QIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKY 569
           ++  +  + L     L++L +  N+            VF  L ++D++HN+F  +     
Sbjct: 515 RLTVLSHNDL--PANLEILDISRNQLLAP-----NPDVFVSLSVLDITHNKFICECELST 567

Query: 570 FQCW 573
           F  W
Sbjct: 568 FINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (266), Expect = 1e-23
 Identities = 74/449 (16%), Positives = 126/449 (28%), Gaps = 129/449 (28%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147
           H++        I     ++ +      +  L L+        + S +             
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV--FSLNSRV------------F 286

Query: 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYI 207
             L  LK L L+ N  +     +F                             L  L  +
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFY---------------------------GLDNLQVL 319

Query: 208 NFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267
           N   N L     +    L ++  + L+ N +          L +L  LDL  N       
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----- 374

Query: 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327
           ++I  +  +  + L  N L              +L  + L+AN + L      N+ +   
Sbjct: 375 TTIHFIPSIPDIFLSGNKLV-------------TLPKINLTANLIHLSENRLENLDILYF 421

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
                     +                                     +LQ + L+ N  
Sbjct: 422 L-------LRVP------------------------------------HLQILILNQNRF 438

Query: 388 TGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSL 447
           +             L  L L  N LQ          +                   L+ L
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV----------------FEGLSHL 482

Query: 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507
           +VL L+HN+L+ + P       +F + T L+ + L+ N L       L     LE LD+ 
Sbjct: 483 QVLYLNHNYLNSLPPG------VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534

Query: 508 NNQIADIFPSWLGTLPELKVLMLQFNRFH 536
            NQ+    P        L VL +  N+F 
Sbjct: 535 RNQLLAPNPDV---FVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 54/333 (16%), Positives = 101/333 (30%), Gaps = 56/333 (16%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
             R+       L+          ++ +     + + LS N ++     S      L+ L+
Sbjct: 5   DGRIAFYRFCNLT----------QVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 506 LGNNQIA-DIFPSWLGTLPELKVLMLQFNR--------FHG---------------EIGE 541
           LG+      I       LP L++L L  ++        F G               +   
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 542 PDTGFVF-PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS--QLKYMQDQPGQSLNYI 598
            D  F     L  +DLS N+         F   N++K  + S  Q+  + +   + L   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ-G 173

Query: 599 LPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV----SNFLTGIILSN--NKLIGKIP 652
              S   +   SL    +               ++     N  T  I  N  N +     
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 653 TSISELKGLNCLNLSGNNLLGHIPSSLGNL--TVLESLDLSNNNLSGEIPRQLAELTSLA 710
            S+     +       +N+     ++   L  + +  LDLS+  +     R    L  L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 711 VFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
           V +++ N +              + +F G   L
Sbjct: 294 VLNLAYNKIN----------KIADEAFYGLDNL 316

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (408), Expect = 6e-42
 Identities = 99/581 (17%), Positives = 179/581 (30%), Gaps = 98/581 (16%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
              K L+LS N      S SF                            +  +L  ++  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF---------------------------SFPELQVLDLS 60

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI 270
             ++         +L+ L+ L L  N ++         L+ L  L              I
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 271 SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI--RLQNKF 328
             LK L+ L++  N +  +  + E    L +L  L LS+N +  I    + +  ++    
Sbjct: 121 GHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 329 VFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388
           + L L+   +         + +L  L L  N     +    +      L+   L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA-GLEVHRLVLGEFR 238

Query: 389 GFDR------------GSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGK 436
                            ++ +    L  LD   + +          +   LVS  +   K
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCL----------SNSKIFKNATNLKMIDLSHNL 486
              +      L +++        +  + L           N+    +  +L+ +DLS N 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 487 LQ--GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDT 544
           L   G   +S    T L++LDL  N +  +  S    L +L+ L  Q +    ++ E   
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK-QMSEFSV 416

Query: 545 GFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSA 604
                 L  +D+SH        +  F   ++++V     L  M        N    +   
Sbjct: 417 FLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEV-----L-KMAG------NSFQENFLP 463

Query: 605 YIFD--YSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN 662
            IF    +L ++                           LS  +L    PT+ + L  L 
Sbjct: 464 DIFTELRNLTFLD--------------------------LSQCQLEQLSPTAFNSLSSLQ 497

Query: 663 CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQL 703
            LN++ N L          LT L+ + L  N      PR  
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 8e-41
 Identities = 102/474 (21%), Positives = 164/474 (34%), Gaps = 55/474 (11%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
            S S F    L+ L L+        I               +  +L+ L  L L+ N   
Sbjct: 44  GSYSFFSFPELQVLDLSRCEI--QTIEDG------------AYQSLSHLSTLILTGNPIQ 89

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT-GPIPNWLA 223
           S    +FS +   + L  L     NL       + +L  L  +N   N +    +P + +
Sbjct: 90  SLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTA----LDLSCNQFQGPVPSSISELKRLEYL 279
           NL  L  L L SN+++    + +  L Q+      LDLS N     +     +  RL  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLK 339
            L +N  S NV ++  +  L  L V  L         RN  N+   +K    GL +  ++
Sbjct: 206 TLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEF----RNEGNLEKFDKSALEGLCNLTIE 260

Query: 340 EFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLW 399
           EF        +L  LD   + I              N+   +L    I      S    W
Sbjct: 261 EF--------RLAYLDYYLDDIIDLFNC------LTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
             L  ++ +  +      +  +S      ++N      +    +L SL  LDLS N LS 
Sbjct: 307 QHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLS- 360

Query: 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP-SW 518
               C S S      T+LK +DLS N +   +  +      LE LD  ++ +  +   S 
Sbjct: 361 -FKGCCSQS--DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQC 572
             +L  L  L +                    L ++ ++ N F        F  
Sbjct: 417 FLSLRNLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (379), Expect = 3e-38
 Identities = 90/469 (19%), Positives = 162/469 (34%), Gaps = 66/469 (14%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
           +  +   L  L+ L   + N   + + +              +G+L  LK L ++ N   
Sbjct: 92  ALGAFSGLSSLQKLVAVETNL--ASLENF------------PIGHLKTLKELNVAHNLIQ 137

Query: 165 S-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL----NQLTGPIP 219
           S      FS     T L  L L++  +   + + L  L Q+  +N  L    N +    P
Sbjct: 138 SFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 220 NWLANLNRLTILSLKSNQLRGYLPSQ-IGSLTQLTALDLSCNQFQGP---VPSSISELKR 275
                +  L  L+L++N     +    I  L  L    L   +F+          S L+ 
Sbjct: 195 GAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 276 LEYLDLHSNNLSGN----VYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQN----- 326
           L  L +    L+        I +L   L ++    L +  +  +   + N   Q+     
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313

Query: 327 ------------KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
                           L   S         ++    LE LDLS N +  K      +  T
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 375 GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL------- 427
            +L++++LS+N +       + L    L  LD + + L+    +   S    L       
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLD 427

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
           +S+             L+SL VL ++ N              IF    NL  +DLS   L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----PDIFTELRNLTFLDLSQCQL 482

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
           +   P +  + + L+ L++ +NQ+  +       L  L+ + L  N + 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (348), Expect = 3e-34
 Identities = 86/532 (16%), Positives = 156/532 (29%), Gaps = 102/532 (19%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
                ++   N L         +   L +L L   +++        SL+ L+ L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
            Q     + S L  L+ L     NL+        +  LK+L  L ++ N +         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVT--TGNLQF 379
             L N                        LE LDLS+NKI       L  +         
Sbjct: 146 SNLTN------------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAP 439
           ++LS N +     G+   +   L  L LR+N     +                       
Sbjct: 182 LDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVM--------------------KT 219

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG---RIPRSLA 496
            +  L  L V  L              +    +   NL + +     L      I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 497 NCTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIID 555
             T +    L +  I  +   S+      L+++  +F +F               L+ + 
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLT 331

Query: 556 LSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIY 615
            + N+                                        ++ + +   SL+++ 
Sbjct: 332 FTSNKGG--------------------------------------NAFSEVDLPSLEFLD 353

Query: 616 AYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI 675
                +  KG        +  L  + LS N +I  + ++   L+ L  L+   +NL    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 676 PSS-LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
             S   +L  L  LD+S+ +           L+SL V  ++ N+        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 4e-26
 Identities = 71/386 (18%), Positives = 136/386 (35%), Gaps = 43/386 (11%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            + LDLS N +         +     LQ ++LS   I   + G+   L + L TL L  N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGN 86

Query: 411 KLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470
            +Q    +                         L+SL+ L      L+ +          
Sbjct: 87  PIQS---LALG------------------AFSGLSSLQKLVAVETNLASLENFP------ 119

Query: 471 FKNATNLKMIDLSHNLLQ-GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
             +   LK ++++HNL+Q  ++P   +N T LE LDL +N+I  I+ + L  L ++ +L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 530 LQFNRFHGEIGE-PDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQ 588
           L  +     +       F   +L  + L +N  S  +     Q    +      +L   +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ---GLAGLEVHRLVLGE 236

Query: 589 DQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI 648
            +   +L     S+   + + +++      +      I   +  ++N ++   L +  + 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTI- 294

Query: 649 GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTS 708
            +     S   G   L L            L +L     L  ++N           +L S
Sbjct: 295 -ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAFS--EVDLPS 348

Query: 709 LAVFDVSDNNLTGQIPQGKQFNTFEN 734
           L   D+S N L+ +    +      +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTS 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.5 bits (199), Expect = 8e-16
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 18/200 (9%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            L+L+ + +      S S F    L++L L+ N      + S  + L             
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQ----------- 397

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
             L+ L+   +N       S         L +L +++ +    F      L+ L  +   
Sbjct: 398 --LEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 211 LNQLTGPI-PNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269
            N       P+    L  LT L L   QL    P+   SL+ L  L+++ NQ +      
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 270 ISELKRLEYLDLHSNNLSGN 289
              L  L+ + LH+N    +
Sbjct: 514 FDRLTSLQKIWLHTNPWDCS 533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 2e-40
 Identities = 109/475 (22%), Positives = 169/475 (35%), Gaps = 76/475 (16%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQ------VPSLGNLTKLKC 155
            IN   +   L       L   N   +   +++  +++          +  +  L  L  
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQ 72

Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
           +  S N  +       + +   T+L  + + N N I +    L NLT LT +    NQ+T
Sbjct: 73  INFSNNQLTD-----ITPLKNLTKLVDILMNN-NQIADITP-LANLTNLTGLTLFNNQIT 125

Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
              P  L NL  L  L L SN +     S +  LT L  L              ++ L  
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTT 178

Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
           LE LD+ SN +S       +L KL +L  L  + N +S IT     + +      L L  
Sbjct: 179 LERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG 230

Query: 336 CNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV 395
             LK+ +  L     L  LDL+ N+I    P   L      L  + L  N I+     S 
Sbjct: 231 NQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLT----KLTELKLGANQISNI---SP 282

Query: 396 VLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
           +   T L  L+L  N+L+   PI                        NL +L  L L  N
Sbjct: 283 LAGLTALTNLELNENQLEDISPI-----------------------SNLKNLTYLTLYFN 319

Query: 456 FLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF 515
            +S + P          + T L+ +   +N +      SLAN T + +L  G+NQI+D+ 
Sbjct: 320 NISDISP--------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369

Query: 516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYF 570
           P  L  L  +  L L    +               + I +   N     +     
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVN-----YKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (378), Expect = 9e-39
 Identities = 111/561 (19%), Positives = 187/561 (33%), Gaps = 112/561 (19%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
           Q+ +   L +     L + N +   S          +++ L       I      +  L 
Sbjct: 16  QIFTDTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADR-LGIKSIDG-VEYLN 68

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            LT INF  NQLT   P  L NL +L  + + +NQ+     + + +LT LT L L  NQ 
Sbjct: 69  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI 124

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI 322
                  +  L  L  L+L SN +S    I  L   L SL  L        L       +
Sbjct: 125 TDI--DPLKNLTNLNRLELSSNTISD---ISAL-SGLTSLQQLSFGNQVTDLK-----PL 173

Query: 323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNL 382
                   L ++S  + + +  L     LE L  + N+I    P  +L     NL  ++L
Sbjct: 174 ANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPLGILT----NLDELSL 228

Query: 383 SYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC 442
           + N +        +   T+L  LDL +N++     + P                    L 
Sbjct: 229 NGNQLKDI---GTLASLTNLTDLDLANNQISN---LAP--------------------LS 262

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
            L  L  L L  N +S + P            T L  ++L+ N L+   P  ++N   L 
Sbjct: 263 GLTKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           +L L  N I+DI P  + +L +L+ L    N+    + +  +      +  +   HN+ S
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQIS 366

Query: 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMV 622
              P                                            +  +        
Sbjct: 367 DLTPLANLT--------------------------------------RITQLGLNDQAWT 388

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682
           N    +NY    +    +      LI   P +IS+       +++ N L  +        
Sbjct: 389 N--APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWN-LPSYTNEVSYTF 443

Query: 683 TVLESLDLSNNNLSGEIPRQL 703
           +   ++       SG + + L
Sbjct: 444 SQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (349), Expect = 6e-35
 Identities = 99/536 (18%), Positives = 180/536 (33%), Gaps = 131/536 (24%)

Query: 185 LANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS 244
           +     I +  +    L +          +T  +     +L+++T L      ++     
Sbjct: 8   ITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--ID 62

Query: 245 QIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIV 304
            +  L  LT ++ S NQ      + +  L +L  + +++N ++    I  L   L +L  
Sbjct: 63  GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD---ITPL-ANLTNLTG 116

Query: 305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK 364
           L L  N ++ I                           D L +   L  L+LS+N I   
Sbjct: 117 LTLFNNQITDI---------------------------DPLKNLTNLNRLELSSNTISDI 149

Query: 365 IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTI 424
                L     +LQ ++    +       ++    T L  LD+ SNK+            
Sbjct: 150 SALSGLT----SLQQLSFGNQVTDLKPLANL----TTLERLDISSNKVSDISV------- 194

Query: 425 HYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
                           L  L +L  L  ++N +S + P            TNL  + L+ 
Sbjct: 195 ----------------LAKLTNLESLIATNNQISDITP--------LGILTNLDELSLNG 230

Query: 485 NLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDT 544
           N L+     +LA+ T L  LDL NNQI+++ P  L  L +L  L L  N+          
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG- 285

Query: 545 GFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSA 604
                 L  ++L+ N+     P           ++N   L Y+                 
Sbjct: 286 ---LTALTNLELNENQLEDISP-----------ISNLKNLTYL----------------- 314

Query: 605 YIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCL 664
                    +Y  +I+ ++         ++  L  +   NNK+     +S++ L  +N L
Sbjct: 315 --------TLYFNNISDIS-----PVSSLTK-LQRLFFYNNKV--SDVSSLANLTNINWL 358

Query: 665 NLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
           +   N +    P  L NLT +  L L++   +       A ++           L 
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (342), Expect = 6e-34
 Identities = 99/453 (21%), Positives = 169/453 (37%), Gaps = 61/453 (13%)

Query: 93  NLTSSCIYG-SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151
           NLT        +   + L +L  L  + + +N                    +  L NLT
Sbjct: 69  NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA----------------DITPLANLT 112

Query: 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL 211
            L  L L  N  +         +   T L+ L L++ N I +  + L  LT L  ++F  
Sbjct: 113 NLTGLTLFNNQITDI-----DPLKNLTNLNRLELSS-NTISDISA-LSGLTSLQQLSFG- 164

Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271
           NQ+T   P  LANL  L  L + SN++     S +  LT L +L  + NQ      + + 
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLG 218

Query: 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL 331
            L  L+ L L+ N L     I  L   L +L  L L+ N +S +      +    K   L
Sbjct: 219 ILTNLDELSLNGNQLKD---IGTL-ASLTNLTDLDLANNQISNLA----PLSGLTKLTEL 270

Query: 332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD 391
            L +  +   +  L     L  L+L+ N++    P   L     NL ++ L +N I+   
Sbjct: 271 KLGANQISN-ISPLAGLTALTNLELNENQLEDISPISNLK----NLTYLTLYFNNISDI- 324

Query: 392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVL 450
             S V   T L  L   +NK+     +   + I++L   +N ++      L NL  +  L
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQL 380

Query: 451 DLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLGNN 509
            L+    +       +N         + + +   N+    I P ++++       D+  N
Sbjct: 381 GLNDQAWTNAPVNYKAN---------VSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

Query: 510 QIADIFPSWLGTLPELKVLMLQFNRFHGEIGEP 542
             +        T  +   +      F G + +P
Sbjct: 432 LPSYT-NEVSYTFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (305), Expect = 3e-29
 Identities = 104/467 (22%), Positives = 182/467 (38%), Gaps = 62/467 (13%)

Query: 281 LHSNNLSGNVYIEEL--LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
           L S  ++ +  I ++     L   +   L   N++    +TV+    ++   L      +
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVT----DTVSQTDLDQVTTLQADRLGI 58

Query: 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL 398
           K  +D +   + L  ++ S N++    P  L N+T   L  + ++ N I      + +  
Sbjct: 59  KS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLT--KLVDILMNNNQIADI---TPLAN 110

Query: 399 WTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFL 457
            T+L  L L +N++    P+   + ++ L +S+N ++      L  L SL+ L   +   
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-- 166

Query: 458 SGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPS 517
                  +++ K   N T L+ +D+S N +       LA  T LE L   NNQI+DI P 
Sbjct: 167 -------VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP- 216

Query: 518 WLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIK 577
            LG L  L  L L  N+    + +  T      L  +DL++N+ S   P         +K
Sbjct: 217 -LGILTNLDELSLNGNQ----LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 271

Query: 578 VANKSQLKYMQDQPGQSLNYILPSSSAYIFD-YSLQYIYAYSITMVNKGIEMNYGKVSNF 636
           +                 N I  S+ + +    +L  +        N+  +++       
Sbjct: 272 LGA---------------NQI--SNISPLAGLTALTNLELNE----NQLEDISPISNLKN 310

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           LT + L  N +    P  +S L  L  L    N +     SSL NLT +  L   +N +S
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
              P  LA LT +    ++D   T      K   +  N+       L
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (386), Expect = 3e-39
 Identities = 83/481 (17%), Positives = 160/481 (33%), Gaps = 61/481 (12%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151
           L L SS I  +     + + L  LE L L+DN+   S + S               G L+
Sbjct: 55  LILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSW------------FGPLS 98

Query: 152 KLKCLELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINF 209
            LK L L  N + +   ++ F      T L  L + N+    E        LT L  +  
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFP---NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269
               L       L ++  +  L+L  ++    L      L+ +  L+L          S 
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 270 ISELKRLEYLDLHSNNLS--------GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
           +   +    +   +   S          + +   + +L  +     + N L     +  +
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275

Query: 322 IRLQNKFV------FLGLASCNLKEFLD-FLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
           +  +   V       L +    L   L    +  ++++ + +  +K+   +P        
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334

Query: 375 GNLQFVNLSYNLIT--GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPEST-----IHYL 427
            +L+F++LS NL+        +    W  L TL L  N L+  +    E       +  L
Sbjct: 335 -SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSL 392

Query: 428 -VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN-----------SKIFKNAT 475
            +S N     +         +R L+LS   +  V                          
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP 451

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
            L+ + +S N L+  +P + +   +L  + +  NQ+  +       L  L+ + L  N +
Sbjct: 452 RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 536 H 536
            
Sbjct: 510 D 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  151 bits (383), Expect = 7e-39
 Identities = 98/546 (17%), Positives = 178/546 (32%), Gaps = 74/546 (13%)

Query: 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQL 252
             PS L     +  ++   N++T      L     L +L LKS+++         SL  L
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 253 TALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
             LDLS N       S    L  L+YL+L  N     + +  L P L +L  L +     
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVET 135

Query: 313 SLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNV 372
                         +  F GL S               L  L++ A  +       L ++
Sbjct: 136 ---------FSEIRRIDFAGLTS---------------LNELEIKALSLRNYQSQSLKSI 171

Query: 373 TTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ----GPLPIPPESTIHYLV 428
              ++  + L  +           +L + +  L+LR   L      PLP+   S+    +
Sbjct: 172 R--DIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 429 SNNLLT---------GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK--IFKNATNL 477
           +               KL  ++  L+ +   D + N L    P                +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 478 KMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHG 537
           + + +    L   +    +    ++ + + N+++  +  S+   L  L+ L L  N    
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 538 EIGEPDTGF-VFPKLRIIDLSHNRFSG-KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595
           E  +       +P L+ + LS N     +   +       +   + S+            
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR------------ 396

Query: 596 NYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT 653
           N   P   +  +   ++++   S  I +V   I          L  + +SNN L      
Sbjct: 397 NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-------LEVLDVSNNNL-DSFSL 448

Query: 654 SISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD 713
            +  L+    L +S N L   +P +     VL  + +S N L          LTSL    
Sbjct: 449 FLPRLQE---LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 714 VSDNNL 719
           +  N  
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  150 bits (381), Expect = 1e-38
 Identities = 86/494 (17%), Positives = 170/494 (34%), Gaps = 75/494 (15%)

Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASF 171
              ++ L L+ N    + I                L     L+ L L  +  ++    +F
Sbjct: 25  TAAMKSLDLSFNKI--TYIGHG------------DLRACANLQVLILKSSRINTIEGDAF 70

Query: 172 SWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTI 230
                   L  L L++ +L     SW   L+ L Y+N   N      + +   NL  L  
Sbjct: 71  Y---SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 231 LSLKSNQLRGYLPSQ-IGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGN 289
           L + + +    +       LT L  L++     +     S+  ++ + +L LH +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES--A 185

Query: 290 VYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKF---------VFLGLASCNLKE 340
             +E     L S+  L L   NL+    + + +   +           V    +   L +
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 341 FLDFLNDQDQLELLDLSANKIPG------KIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
            L ++ +  ++E  D + N +         +   L  V T  ++ +++    +       
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305

Query: 395 VVLLWTDLVTLDLRSNKLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPW---LCNLN 445
             LL   +  + + ++K+     +P        ++ +L +S NL+  +            
Sbjct: 306 YSLL-EKVKRITVENSKVFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           SL+ L LS N L   +       +I     NL  +D+S N     +P S      + FL+
Sbjct: 362 SLQTLVLSQNHLR-SMQ---KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 506 LGNNQIADIFPSWLGTL-----------------PELKVLMLQFNRFHGEIGEPDTGFVF 548
           L +  I  +      TL                 P L+ L +  N+    +       +F
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK----LKTLPDASLF 472

Query: 549 PKLRIIDLSHNRFS 562
           P L ++ +S N+  
Sbjct: 473 PVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (354), Expect = 4e-35
 Identities = 86/535 (16%), Positives = 168/535 (31%), Gaps = 82/535 (15%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
           +  L L  N++       + +   L  L L  ++       +   L  LE+LDL  N+LS
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 288 GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFL--DFL 345
                      L SL  L L  N    +   ++   L N    L + +      +     
Sbjct: 88  --SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN-LQTLRIGNVETFSEIRRIDF 144

Query: 346 NDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
                L  L++ A  +       L ++   ++  + L  +           +L + +  L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIR--DIHHLTLHLSESAFLLEIFADIL-SSVRYL 201

Query: 406 DLRSNKLQ----GPLPIPPESTIHYLVSNNLLT---------GKLAPWLCNLNSLRVLDL 452
           +LR   L      PLP+   S+    ++               KL  ++  L+ +   D 
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 453 SHNFLSGVLPQCLSNSK--IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ 510
           + N L    P                ++ + +    L   +    +    ++ + + N++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 511 IADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF-VFPKLRIIDLSHNRFSG-KLPSK 568
           +  +  S+   L  L+ L L  N    E  +       +P L+ + LS N     +   +
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 569 YFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEM 628
                  +   + S+            N   P   +  +   ++++              
Sbjct: 382 ILLTLKNLTSLDISR------------NTFHPMPDSCQWPEKMRFLN------------- 416

Query: 629 NYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESL 688
                        LS+  +   + T I   + L  L++S NNL       L  L  L   
Sbjct: 417 -------------LSSTGI-RVVKTCI--PQTLEVLDVSNNNL-DSFSLFLPRLQEL--- 456

Query: 689 DLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
            +S N L   +P   +    L V  +S N L           +  +  F+    L
Sbjct: 457 YISRNKLK-TLPD-ASLFPVLLVMKISRNQLK----------SVPDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 1e-26
 Identities = 75/491 (15%), Positives = 148/491 (30%), Gaps = 88/491 (17%)

Query: 248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307
           S       D     F   +PS ++    ++ LDL  N ++        L    +L VL L
Sbjct: 3   SCDASGVCDGRSRSFTS-IPSGLTA--AMKSLDLSFNKIT--YIGHGDLRACANLQVLIL 57

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
            ++ ++ I  +           F  L S               LE LDLS N +      
Sbjct: 58  KSSRINTIEGD----------AFYSLGS---------------LEHLDLSDNHLSSLSSS 92

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427
           W   ++  +L+++NL  N        S+    T+L TL + +                  
Sbjct: 93  WFGPLS--SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV----------------- 133

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
                 +         L SL  L++    L           +  K+  ++  + L  +  
Sbjct: 134 ---ETFSEIRRIDFAGLTSLNELEIKALSLRNYQS------QSLKSIRDIHHLTLHLSES 184

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR--------FHGEI 539
              +       + + +L+L +  +A    S L        +     R        F+  +
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 540 GEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI- 598
                     ++   D + N   G          + +       ++ +       +    
Sbjct: 245 KLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRL------HIPQFY 297

Query: 599 LPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKI--- 651
           L    + ++     ++ I   +  + +V      +       L  + LS N ++ +    
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS----LEFLDLSENLMVEEYLKN 353

Query: 652 PTSISELKGLNCLNLSGNNL--LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSL 709
                    L  L LS N+L  +      L  L  L SLD+S N     +P        +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 710 AVFDVSDNNLT 720
              ++S   + 
Sbjct: 413 RFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 7e-17
 Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 44/300 (14%)

Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
             +++ LDLS N ++ +           +   NL+++ L  + +      +  +   LE 
Sbjct: 25  TAAMKSLDLSFNKITYIGHG------DLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78

Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563
           LDL +N ++ +  SW G L  LK L L  N +   +G          L+ + + +     
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 564 KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN 623
           ++    F           + L  +                  I   SL+   + S+  + 
Sbjct: 138 EIRRIDFA--------GLTSLNEL-----------------EIKALSLRNYQSQSLKSIR 172

Query: 624 KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLT 683
                        +  + L  ++    +      L  +  L L   NL     S L    
Sbjct: 173 D------------IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 684 VLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
           V   +       S        EL  L  + +  + +            F  S  +    L
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 49/283 (17%), Positives = 89/283 (31%), Gaps = 77/283 (27%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
            + ++  V D      + + P  L+          +K +DLS N +       L  C  L
Sbjct: 2   LSCDASGVCDGRSRSFTSI-PSGLT--------AAMKSLDLSFNKITYIGHGDLRACANL 52

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
           + L L +++I  I      +L                            L  +DLS N  
Sbjct: 53  QVLILKSSRINTIEGDAFYSLG--------------------------SLEHLDLSDNHL 86

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI--LPSSSAYIFDYSLQYIYAYSI 619
           S  L S +F   +++K  N               N    L  +S +    +LQ +     
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMG------------NPYQTLGVTSLFPNLTNLQTLR---- 129

Query: 620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP-TSISELKGLNCLNLSGNNLLGHIPSS 678
                                 + N +   +I     + L  LN L +   +L  +   S
Sbjct: 130 ----------------------IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721
           L ++  +  L L  +  +  +      L+S+   ++ D NL  
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 1e-38
 Identities = 76/393 (19%), Positives = 150/393 (38%), Gaps = 61/393 (15%)

Query: 142 GQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNL 201
            Q+    +L +     L + + +           +   ++ L +A    +      +  L
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDV-----VTQEELESITKLVVAG-EKVASIQG-IEYL 65

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
           T L Y+N + NQ+T   P  L+NL +LT L + +N++     S + +LT L  L L+ + 
Sbjct: 66  TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
                 S ++ L ++  L+L +N+   ++     L  +  L  L ++ + +  +T     
Sbjct: 122 ISDI--SPLANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVTPIANL 176

Query: 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVN 381
             L +    L L    +++ +  L     L       N+I    P  + N+T   L  + 
Sbjct: 177 TDLYS----LSLNYNQIED-ISPLASLTSLHYFTAYVNQITDITP--VANMT--RLNSLK 227

Query: 382 LSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL 441
           +  N IT      +  L + L  L++ +N++     I                      +
Sbjct: 228 IGNNKITDLS--PLANL-SQLTWLEIGTNQISD---INA--------------------V 261

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
            +L  L++L++  N +S +         +  N + L  + L++N L       +   T L
Sbjct: 262 KDLTKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
             L L  N I DI P  L +L ++         
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 77/367 (20%), Positives = 148/367 (40%), Gaps = 41/367 (11%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFS------GQVPSLGNLTKLKC 155
            IN       L       L   +        E+ +++           +  +  LT L+ 
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEY 70

Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
           L L+ N  +       S ++   +L+ L +   N I +  + L NLT L  +  + + ++
Sbjct: 71  LNLNGNQITD-----ISPLSNLVKLTNLYIGT-NKITDISA-LQNLTNLRELYLNEDNIS 123

Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
              P  LANL ++  L+L +N       S + ++T L  L ++ ++ +    + I+ L  
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDV--TPIANLTD 178

Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
           L  L L+ N +     I  L   L SL       N ++ IT      RL +    L + +
Sbjct: 179 LYSLSLNYNQIED---ISPL-ASLTSLHYFTAYVNQITDITPVANMTRLNS----LKIGN 230

Query: 336 CNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV 395
             + + L  L +  QL  L++  N+I   I   + ++T   L+ +N+  N I+     SV
Sbjct: 231 NKITD-LSPLANLSQLTWLEIGTNQI-SDINA-VKDLT--KLKMLNVGSNQISDI---SV 282

Query: 396 VLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL----VSNNLLTGKLAPWLCNLNSLRVLD 451
           +   + L +L L +N+L     +     +  L    +S N +T      L +L+ +   D
Sbjct: 283 LNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

Query: 452 LSHNFLS 458
            ++  + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 2e-26
 Identities = 73/363 (20%), Positives = 126/363 (34%), Gaps = 85/363 (23%)

Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
              L  +   +NQ+        A+L       L+   +   +      L  +T L ++  
Sbjct: 2   AATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE 54

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
           +        I  L  LEYL+L+ N ++    I  L   L  L  L++  N ++ I+    
Sbjct: 55  KVASI--QGIEYLTNLEYLNLNGNQITD---ISPLS-NLVKLTNLYIGTNKITDIS---- 104

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
                        A  NL            L  L L+ + I    P   L      +  +
Sbjct: 105 -------------ALQNLT----------NLRELYLNEDNISDISPLANLT----KMYSL 137

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440
           NL  N           +  T L  L +  +K++    + P                    
Sbjct: 138 NLGANHNLSDLSPLSNM--TGLNYLTVTESKVKD---VTP-------------------- 172

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
           + NL  L  L L++N +  + P          + T+L       N +    P  +AN T 
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--------LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           L  L +GNN+I D+ P  L  L +L  L +  N+    I + +      KL+++++  N+
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDINAVKDLTKLKMLNVGSNQ 276

Query: 561 FSG 563
            S 
Sbjct: 277 ISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.7 bits (226), Expect = 8e-20
 Identities = 59/324 (18%), Positives = 114/324 (35%), Gaps = 50/324 (15%)

Query: 402 LVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
             TL      +    P    +      +    +T         L S+  L ++   ++ +
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASI 59

Query: 461 LPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520
                      +  TNL+ ++L+ N +    P  L+N   L  L +G N+I DI  S L 
Sbjct: 60  QG--------IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQ 107

Query: 521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN 580
            L  L+ L L  +     I +        K+  ++L  N     L            ++N
Sbjct: 108 NLTNLRELYLNEDN----ISDISPLANLTKMYSLNLGANHNLSDLSP----------LSN 153

Query: 581 KSQLKYMQDQPGQSLNYILPSSSAYIFD-YSLQYIYAYS--ITMVNKGIEMNYGKVSNFL 637
            + L Y+      ++          I +   L  +      I  ++         +++ L
Sbjct: 154 MTGLNYL------TVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-----PLASLTS-L 201

Query: 638 TGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697
                  N++    P  ++ +  LN L +  N +    P  L NL+ L  L++  N +S 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 698 EIPRQLAELTSLAVFDVSDNNLTG 721
                + +LT L + +V  N ++ 
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.9 bits (172), Expect = 7e-13
 Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 47/281 (16%)

Query: 447 LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDL 506
              L      ++ + P          +        L    +   +         +  L +
Sbjct: 2   AATLATLPAPINQIFP--------DADLAEGIRAVLQKASVTDVVT--QEELESITKLVV 51

Query: 507 GNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLP 566
              ++A I    +  L  L+ L L  N+    I +        KL  + +  N+ +  + 
Sbjct: 52  AGEKVASIQG--IEYLTNLEYLNLNGNQ----ITDISPLSNLVKLTNLYIGTNKIT-DIS 104

Query: 567 SKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDY-SLQYIYAYSITMVNKG 625
           +          + N + L+ +       LN    S  + + +   +  +   +    N  
Sbjct: 105 A----------LQNLTNLREL------YLNEDNISDISPLANLTKMYSLNLGA----NHN 144

Query: 626 IEM--NYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLT 683
           +        ++  L  + ++ +K+    P  I+ L  L  L+L+ N +    P  L +LT
Sbjct: 145 LSDLSPLSNMTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 684 VLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIP 724
            L       N ++   P  +A +T L    + +N +T   P
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + + +N++     + ++ L  LN L L+ N L       +G LT L +L LS N+++
Sbjct: 267 LKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 697 GEIPRQLAELTSLAVFDVSDNNLT 720
              P  LA L+ +   D ++  + 
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 9e-10
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           LT + +  N++      ++ +L  L  LN+  N +     S L NL+ L SL L+NN L 
Sbjct: 245 LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIP 724
            E    +  LT+L    +S N++T   P
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 4e-36
 Identities = 73/486 (15%), Positives = 135/486 (27%), Gaps = 107/486 (22%)

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
           N NR  I  +  + L+  L S   S   +  LDLS N       + ++   +LE L+L S
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
           N L       + L  L +L  L L+ N +  +                            
Sbjct: 68  NVLYE---TLD-LESLSTLRTLDLNNNYVQELLVGP------------------------ 99

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
                  +E L  + N I  ++            + + L+ N IT           + + 
Sbjct: 100 ------SIETLHAANNNI-SRVSCSRGQ----GKKNIYLANNKITMLRDLDEGCR-SRVQ 147

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
            LDL+ N++     +                        + ++L  L+L +NF+  V  Q
Sbjct: 148 YLDLKLNEIDT---VNFAELAA-----------------SSDTLEHLNLQYNFIYDVKGQ 187

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                        LK +DLS N L   +     +   + ++ L NN++  I    L    
Sbjct: 188 V--------VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQ 237

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ 583
            L+                            DL  N F       +F     ++   K  
Sbjct: 238 NLEHF--------------------------DLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILS 643
           +K +  Q  +                +L +  AY    +          +      ++  
Sbjct: 272 VKKLTGQNEEECTVP-----------TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 644 NNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQL 703
                 ++            ++         I           +L+     L  ++    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 704 AELTSL 709
                L
Sbjct: 381 RAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (353), Expect = 2e-35
 Identities = 73/402 (18%), Positives = 136/402 (33%), Gaps = 38/402 (9%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259
           N  +        + L   + +   +   +  L L  N L     + +   T+L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNT 319
           N         +  L  L  LDL++N +         L    S+  L  + NN+S ++ + 
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVSCSR 118

Query: 320 VNIRLQNKFVFLGLASCNLKEFLDF-LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ 378
                +N    + LA+  +    D     + +++ LDL  N+I       L   +   L+
Sbjct: 119 -GQGKKN----IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLE 172

Query: 379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE----STIHYL-VSNNLL 433
            +NL YN I         +++  L TLDL SNKL     + PE    + + ++ + NN L
Sbjct: 173 HLNLQYNFIYDVKGQ---VVFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKL 226

Query: 434 TGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR 493
              +   L    +L   DL  N        C +    F     ++   ++   ++    +
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRVQ--TVAKQTVKKLTGQ 278

Query: 494 SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEI--GEPDTGFVFPKL 551
           +   CT+      G     D+   +   L  LK          G              + 
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 552 RIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQ 593
           R ID    ++   +  +      A     + +    +     
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 9e-34
 Identities = 69/424 (16%), Positives = 133/424 (31%), Gaps = 38/424 (8%)

Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
           +    +   + D++    +  + +              +   +K L+LS N  S   +A 
Sbjct: 8   NGNRYKIEKVTDSSL--KQALASL------------RQSAWNVKELDLSGNPLSQISAAD 53

Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
            +     T+L  L L++ N++ E    L +L+ L  ++ + N +       L     +  
Sbjct: 54  LA---PFTKLELLNLSS-NVLYETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIET 103

Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV 290
           L   +N +   +            + L+ N+             R++YLDL  N +   V
Sbjct: 104 LHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TV 159

Query: 291 YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQ 350
              EL     +L  L L  N +  +    V  +L+     L L+S  L            
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT----LDLSSNKLAFMGPEFQSAAG 215

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           +  + L  NK+   I   L      NL+  +L  N                + T+  ++ 
Sbjct: 216 VTWISLRNNKL-VLIEKALRFSQ--NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 411 K-LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
           K L G                       AP+   L +L+  + +     G   + L    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE- 331

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
             +N    + ID      +  I +          L+     + +   +      EL   +
Sbjct: 332 -RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 530 LQFN 533
            Q  
Sbjct: 391 QQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 1e-23
 Identities = 62/435 (14%), Positives = 118/435 (27%), Gaps = 87/435 (20%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           +  +  L  L  L  L L +N                       L     ++ L  + NN
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQ-------------------ELLVGPSIETLHAANNN 110

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTG-PIPN 220
            S    +             + LAN N I           +++ Y++  LN++       
Sbjct: 111 ISRVSCSRG------QGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
             A+ + L  L+L+ N +   +  Q+    +L  LDLS N+    +         + ++ 
Sbjct: 164 LAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKE 340
           L +N L     IE+ L   ++L    L  N     T                        
Sbjct: 221 LRNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTL----------------------- 254

Query: 341 FLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT 400
             DF +   +++ +     K   K+ G             +                   
Sbjct: 255 -RDFFSKNQRVQTVAKQTVK---KLTG-QNEEECTVPTLGHYGAYCCEDLPAPFA----D 305

Query: 401 DLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
            L+ L  + + L              L      T +L     N    R +D        V
Sbjct: 306 RLIALKRKEHAL--------------LSGQGSETERLECERENQARQREIDALKEQYRTV 351

Query: 461 LPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520
           + Q      +         ++     L  ++         L+          ++      
Sbjct: 352 IDQ------VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATE 404

Query: 521 TLPELKVLMLQFNRF 535
               L++L     R+
Sbjct: 405 EQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 25/261 (9%)

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
           I +N    K+  ++ + L+  +     +   ++ LDL  N ++ I  + L    +L++L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQD 589
           L  N     + E         LR +DL++N     L     +  +    A  + +  +  
Sbjct: 65  LSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH----AANNNISRVSC 116

Query: 590 QPGQSLNYI------LPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTG 639
             GQ    I      +             +QY+      I  VN          S+ L  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---SDTLEH 173

Query: 640 IILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI 699
           + L  N +   +   +     L  L+LS N L   +     +   +  + L NN L   I
Sbjct: 174 LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 700 PRQLAELTSLAVFDVSDNNLT 720
            + L    +L  FD+  N   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 37/235 (15%)

Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           I     N    +   + ++ +     S   +   +K L L  N              F K
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTK 59

Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI--LPSSSAYIFD 608
           L +++LS N                  + + S L+ +      + NY+  L         
Sbjct: 60  LELLNLSSNVLYE-TLD----------LESLSTLRTLD----LNNNYVQELLVGP----- 99

Query: 609 YSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNL 666
            S++ ++A +  I+ V+                I L+NNK+             +  L+L
Sbjct: 100 -SIETLHAANNNISRVSCSRGQG-------KKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 667 SGNNLLG-HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
             N +   +      +   LE L+L  N +  ++         L   D+S N L 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 26/221 (11%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
           ++N +        LE L+L  N      +  ++                 KLK L+LS N
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFI--YDVKGQV--------------VFAKLKTLDLSSN 201

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL-TGPIPN 220
             +               ++W++L N N +      L     L + +   N    G + +
Sbjct: 202 KLAFMGPE----FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
           + +   R+  ++     ++          T  T         +         L  L+  +
Sbjct: 257 FFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 281 LHSNNLSGNV--YIEELLPKLKSLIVLFLSANNLSLITRNT 319
               +  G+    +E           +         +    
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 17/71 (23%), Positives = 28/71 (39%)

Query: 651 IPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA 710
           I              ++ ++L   + S   +   ++ LDLS N LS      LA  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 711 VFDVSDNNLTG 721
           + ++S N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 28/242 (11%), Positives = 58/242 (23%), Gaps = 12/242 (4%)

Query: 106 SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSG---------QVPSLGNLTKLKCL 156
             +L   ++LE   L  N F+   +                        +    T     
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 157 ELSQNNFSSPHSASFSWIAKQTELS-WLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
                      +     +         L     +          N  +   I+    Q  
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
             I            L  K   L   + +   +  +L          Q  +  +  E   
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSP 408

Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
           L+ L          +Y+E+   +  ++    +  +  + +      ++  N    L LAS
Sbjct: 409 LQLLR-AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467

Query: 336 CN 337
            N
Sbjct: 468 AN 469

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (350), Expect = 1e-35
 Identities = 74/387 (19%), Positives = 127/387 (32%), Gaps = 55/387 (14%)

Query: 177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
                 + +        F    + L     + F  + +       L +  ++ +L+L   
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
           Q+             +  L +  N  +   P     +  L  L L  N+LS       + 
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIF 137

Query: 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDL 356
                L  L +S NNL  I  +T          F    S               L+ L L
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDT----------FQATTS---------------LQNLQL 172

Query: 357 SANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPL 416
           S+N++   +   L+     +L   N+SYNL++             +  LD   N +   +
Sbjct: 173 SSNRL-THVDLSLIP----SLFHANVSYNLLSTLAIP------IAVEELDASHNSINV-V 220

Query: 417 PIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNAT 475
             P    +  L + +N LT     WL N   L  +DLS+N L  +          F    
Sbjct: 221 RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQ 272

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
            L+ + +S+N L   +         L+ LDL +N +  +          L+ L L  N  
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSI 330

Query: 536 HGEIGEPDTGFVFPKLRIIDLSHNRFS 562
              +           L+ + LSHN + 
Sbjct: 331 V-TLKLS----THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (289), Expect = 1e-27
 Identities = 61/411 (14%), Positives = 130/411 (31%), Gaps = 55/411 (13%)

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
            N Q      D+  +     +     ++T  N + V    + +       +      +  
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-RQVEL 73

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
           L+L   +++    I   +                      ++++ L +  N +  + P  
Sbjct: 74  LNLNDLQIEE---IDTYA------------------FAYAHTIQKLYMGFNAIRYLPPH- 111

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
                +F+N   L ++ L  N L         N   L  L + NN +  I          
Sbjct: 112 -----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQL 584
           L+ L L  NR    +   D   + P L   ++S+N  S        +  +A    + + +
Sbjct: 167 LQNLQLSSNR----LTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDA----SHNSI 217

Query: 585 KYMQDQPGQSLNYI------LPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNF 636
             ++      L  +      L  ++  +    L  +      +  +     +        
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK----MQR 273

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + +SNN+ +  +      +  L  L+LS N+LL H+  +      LE+L L +N++ 
Sbjct: 274 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP 747
             +        +L    +S N+          F      + +     C   
Sbjct: 332 -TLKLST--HHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 53/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C  ++L+   + ++    +  Q +          N K++   ++ ++      L +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
           E L+L + QI +I          ++ L + FN     +  P      P L ++ L  N  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL-PPHVFQNVPLLTVLVLERNDL 129

Query: 562 SGKLPSKYFQCWNAIKVANKS--QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS- 618
           S  LP   F     +   + S   L+ ++D   Q+               SLQ +   S 
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-------------TSLQNLQLSSN 175

Query: 619 -ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS 677
            +T V+  +  +       L    +S N L     ++++    +  L+ S N+ +  +  
Sbjct: 176 RLTHVDLSLIPS-------LFHANVSYNLL-----STLAIPIAVEELDASHNS-INVVRG 222

Query: 678 SLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
            +     L  L L +NNL+ +    L     L   D+S N L 
Sbjct: 223 PV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 5e-35
 Identities = 60/371 (16%), Positives = 113/371 (30%), Gaps = 70/371 (18%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259
           N  +        + L   + +   +   +  L L  N L     + +   T+L  L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNT 319
           N         +  L  L  LDL++N +         L    S+  L  + NN+S ++ + 
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCSR 118

Query: 320 VNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379
                Q                          + + L+ NKI           +   +Q+
Sbjct: 119 ----GQG------------------------KKNIYLANNKITMLRDLDEGCRS--RVQY 148

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL----VSNNLLTG 435
           ++L  N I   +   +      L  L+L+ N +     +  +     L    +S+N L  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLDLSSNKLA- 204

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
            + P   +   +  + L +N L  +        K  + + NL+  DL  N          
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLI-------EKALRFSQNLEHFDLRGNGFH------- 250

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE----IGEPDTGFVFPKL 551
             C  L      N ++  +    +  L                      +    F     
Sbjct: 251 --CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA---D 305

Query: 552 RIIDLSHNRFS 562
           R+I L H+   
Sbjct: 306 RLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 3e-27
 Identities = 60/345 (17%), Positives = 111/345 (32%), Gaps = 36/345 (10%)

Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
           +    +   + D++    +  + +              +   +K L+LS N  S   +A 
Sbjct: 8   NGNRYKIEKVTDSSL--KQALASL------------RQSAWNVKELDLSGNPLSQISAAD 53

Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
            +     T+L  L L++ N++ E    L +L+ L  ++ + N +       L     +  
Sbjct: 54  LA---PFTKLELLNLSS-NVLYETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIET 103

Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV 290
           L   +N +   +            + L+ N+             R++YLDL  N +   V
Sbjct: 104 LHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TV 159

Query: 291 YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQ 350
              EL     +L  L L  N +  +    V  +L+     L L+S  L            
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKT----LDLSSNKLAFMGPEFQSAAG 215

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           +  + L  NK+   I   L      NL+  +L  N                + T+  ++ 
Sbjct: 216 VTWISLRNNKL-VLIEKALRFSQ--NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 411 K-LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSH 454
           K L G                       AP+   L +L      H
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 59/367 (16%), Positives = 104/367 (28%), Gaps = 86/367 (23%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435
             +   ++ + +             ++  LDL  N L     I                 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQ---ISAAD------------- 53

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
                L     L +L+LS N L   L          ++ + L+ +DL++N +Q      L
Sbjct: 54  -----LAPFTKLELLNLSSNVLYETLD--------LESLSTLRTLDLNNNYVQ-----EL 95

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIID 555
                +E L   NN I+ +  S        K + L  N+               +++ +D
Sbjct: 96  LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML--RDLDEGCRSRVQYLD 150

Query: 556 LSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIY 615
           L  N     +                +                           +L+++ 
Sbjct: 151 LKLNEID-TVNFAELA----------ASSD------------------------TLEHLN 175

Query: 616 AYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG 673
                I  V   +          L  + LS+NKL   +        G+  ++L  NN L 
Sbjct: 176 LQYNFIYDVKGQVVFAK------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLR-NNKLV 227

Query: 674 HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFE 733
            I  +L     LE  DL  N       R      +  V  V+   +     Q ++  T  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 734 NSSFEGN 740
                G 
Sbjct: 287 TLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 25/261 (9%)

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
           I +N    K+  ++ + L+  +     +   ++ LDL  N ++ I  + L    +L++L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQD 589
           L  N     + E         LR +DL++N     L     +  +    A  + +  +  
Sbjct: 65  LSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH----AANNNISRVSC 116

Query: 590 QPGQSLNYI------LPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTG 639
             GQ    I      +             +QY+      I  VN          S+ L  
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS---SDTLEH 173

Query: 640 IILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI 699
           + L  N +   +   +     L  L+LS N L   +     +   +  + L NN L   I
Sbjct: 174 LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 700 PRQLAELTSLAVFDVSDNNLT 720
            + L    +L  FD+  N   
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 23/222 (10%)

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDL 402
           +   + ++ ++  ++ + +   +     +    N++ ++LS N ++      +    T L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAW--NVKELDLSGNPLSQISAADLAPF-TKL 60

Query: 403 VTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
             L+L SN L   L +   ST+  L ++NN +       L    S+  L  ++N +S V 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVS 115

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI-FPSWLG 520
                           K I L++N +           + +++LDL  N+I  + F     
Sbjct: 116 CSRG---------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           +   L+ L LQ+N     I +     VF KL+ +DLS N+ +
Sbjct: 167 SSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 34/226 (15%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           +  +  L  L  L  L L +N                       L     ++ L  + NN
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQ-------------------ELLVGPSIETLHAANNN 110

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTG-PIPN 220
            S    +             + LAN N I           +++ Y++  LN++       
Sbjct: 111 ISRVSCSRG------QGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 221 WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD 280
             A+ + L  L+L+ N +   +  Q+    +L  LDLS N+    +         + ++ 
Sbjct: 164 LAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQN 326
           L +N L     IE+ L   ++L    L  N     T      + Q 
Sbjct: 221 LRNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 40/237 (16%), Positives = 74/237 (31%), Gaps = 41/237 (17%)

Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           I     N    +   + ++ +     S   +   +K L L  N              F K
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTK 59

Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY----ILPSSSAYI 606
           L +++LS N    +             + + S L+ +       LN      L       
Sbjct: 60  LELLNLSSNVLY-ETLD----------LESLSTLRTL------DLNNNYVQELLVGP--- 99

Query: 607 FDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCL 664
              S++ ++A +  I+ V+                I L+NNK+             +  L
Sbjct: 100 ---SIETLHAANNNISRVSCSRGQG-------KKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 665 NLSGNNLLG-HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
           +L  N +   +      +   LE L+L  N +  ++         L   D+S N L 
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 45/182 (24%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                     +++L L  N  +                      +   L+ L L  N   
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------------ASSDTLEHLNLQYNF-- 180

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN 224
                                     I +     +   +L  ++   N+L   +     +
Sbjct: 181 --------------------------IYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQS 212

Query: 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ-GPVPSSISELKRLEYLDLHS 283
              +T +SL++N+L   +   +     L   DL  N F  G +    S+ +R++ +   +
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 284 NN 285
             
Sbjct: 272 VK 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  137 bits (346), Expect = 5e-34
 Identities = 96/533 (18%), Positives = 174/533 (32%), Gaps = 41/533 (7%)

Query: 184 ALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLP 243
                       S L        ++ D+             LN   I++ K++ +R    
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 244 SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSL 302
           + + S  Q+  L+L+  Q +     + +    ++ L +  N +    Y+   +   +  L
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLL 125

Query: 303 IVLFLSANNLSLITRNTV--NIRLQNKFVFLGLASCNLKEF-LDFLNDQDQLELLDLSAN 359
            VL L  N+LS + R       +L      L +++ NL+    D       L+ L LS+N
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTT----LSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 360 KIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP 419
           ++   +   L+     +L   N+SYNL++             +  LD   N +   +  P
Sbjct: 182 RL-THVDLSLIP----SLFHANVSYNLLSTLAIP------IAVEELDASHNSINV-VRGP 229

Query: 420 PESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLK 478
               +  L + +N LT     WL N   L  +DLS+N L  +          F     L+
Sbjct: 230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLE 281

Query: 479 MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE 538
            + +S+N L   +         L+ LDL +N +  +          L+ L L  N     
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNS---- 335

Query: 539 IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI 598
           I           L+ + LSHN +        F+      V +  Q   +  Q    L   
Sbjct: 336 IVTLKLS-THHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGL--C 392

Query: 599 LPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEL 658
              S     D  LQYI   S+    +  +          +   LS+              
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452

Query: 659 KGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAV 711
           +    +N     +       +    +L+ L    +            L   + 
Sbjct: 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSD 505

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 4e-28
 Identities = 67/363 (18%), Positives = 125/363 (34%), Gaps = 32/363 (8%)

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
           Q  Y           I + L        + +       Y   +  +L     +    +  
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIE-ELLPKLKSLIVLFLSANNLSLITRNTVN 321
           +    + +   +++E L+L+   +     I+        ++  L++  N +  +  +   
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-- 118

Query: 322 IRLQNKFVFLGLASCNLKEF-LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
            +       L L   +L        ++  +L  L +S N +  +I       TT +LQ +
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATT-SLQNL 176

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAP 439
            LS N +T  D      L   L   ++  N L     +     +  L  S+N +     P
Sbjct: 177 QLSSNRLTHVDLS----LIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVRGP 229

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCT 499
                  L +L L HN         L+++    N   L  +DLS+N L+  +        
Sbjct: 230 VNVE---LTILKLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 500 MLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
            LE L + NN++  +   +   +P LKVL L  N     +        F +L  + L HN
Sbjct: 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HV--ERNQPQFDRLENLYLDHN 334

Query: 560 RFS 562
              
Sbjct: 335 SIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 3e-26
 Identities = 62/413 (15%), Positives = 132/413 (31%), Gaps = 55/413 (13%)

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
            N Q      D+  +     +     ++T  N + V    + +       +      +  
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-RQVEL 79

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
           L+L   +++    I   +                      ++++ L +  N +  + P  
Sbjct: 80  LNLNDLQIEE---IDTYA------------------FAYAHTIQKLYMGFNAIRYLPPH- 117

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
                +F+N   L ++ L  N L         N   L  L + NN +  I          
Sbjct: 118 -----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQL 584
           L+ L L  NR    +   D   + P L   ++S+N  S        +  +A    + + +
Sbjct: 173 LQNLQLSSNR----LTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDA----SHNSI 223

Query: 585 KYMQDQPGQSLNYI------LPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNF 636
             ++      L  +      L  ++  +    L  +      +  +     +        
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK----MQR 279

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + +SNN+ +  +      +  L  L+LS N+LL H+  +      LE+L L +N++ 
Sbjct: 280 LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLS 749
             +   L+   +L    +S N+          F      + +     C     
Sbjct: 338 -TLK--LSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDYQ 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (263), Expect = 1e-23
 Identities = 77/431 (17%), Positives = 125/431 (29%), Gaps = 140/431 (32%)

Query: 106 SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS 165
           ++ L   R +E L+L D      +I +                    ++ L +  N    
Sbjct: 68  AALLDSFRQVELLNLNDLQI--EEIDTYA------------FAYAHTIQKLYMGFNAIRY 113

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANL 225
                F                            N+  LT +  + N L+        N 
Sbjct: 114 LPPHVFQ---------------------------NVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
            +LT LS+ +N L         + T L  L LS N+        +S +  L + ++  N 
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNL 203

Query: 286 LSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFL 345
           LS        L    ++  L  S N+++++                             +
Sbjct: 204 LS-------TLAIPIAVEELDASHNSINVVRGPV------------------------NV 232

Query: 346 NDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
                L +L L  N +      WLLN     L  V+LSYN +                  
Sbjct: 233 E----LTILKLQHNNL--TDTAWLLNYP--GLVEVDLSYNELEKIMYHP----------- 273

Query: 406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465
                                                 +  L  L +S+N L  +     
Sbjct: 274 -----------------------------------FVKMQRLERLYISNNRLVAL----- 293

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
             +   +    LK++DLSHN L   + R+      LE L L +N I  +      T   L
Sbjct: 294 --NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL---STHHTL 347

Query: 526 KVLMLQFNRFH 536
           K L L  N + 
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 81/449 (18%), Positives = 145/449 (32%), Gaps = 47/449 (10%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNY--SKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
              +      L+ L L+ N   +    +   + + +     + +L     ++ L+ S N+
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 222

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
            +              EL+ L L + NL     +WL+N   L  ++   N+L   + +  
Sbjct: 223 INVVRGPVNV------ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
             + RL  L + +N+L   L      +  L  LDLS N     V  +  +  RLE L L 
Sbjct: 275 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLD 332

Query: 283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN----- 337
            N++     ++  L    +L  L LS N+    +   +   +    V      C      
Sbjct: 333 HNSIV---TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 387

Query: 338 ---------LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388
                     K +LD L     L  +     +  G+               +N   +L  
Sbjct: 388 EHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA---------TDTINSVQSLSH 438

Query: 389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLR 448
              +   V L      L+   N+L+  +       I       LL G  A    NL   R
Sbjct: 439 YITQQGGVPL-QGNEQLEAEVNELRAEVQQLTNEQIQ---QEQLLQGLHAEIDTNLRRYR 494

Query: 449 VLDLSHNFLSGVLPQC---LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           +        S  L +    L   + FK          +    +        N  + + LD
Sbjct: 495 LPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD 554

Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNR 534
               + A++         ++K L  + NR
Sbjct: 555 NKRAKQAELRQETSLKRQKVKQLEAKKNR 583

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 75/458 (16%), Positives = 135/458 (29%), Gaps = 46/458 (10%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                 ++  L  L L  N+   S +P  I              N  KL  L +S NN  
Sbjct: 115 PPHVFQNVPLLTVLVLERNDL--SSLPRGI------------FHNTPKLTTLSMSNNNLE 160

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN 224
                +F      T L  L L++ N +      L  +  L + N   N L+      LA 
Sbjct: 161 RIEDDTFQ---ATTSLQNLQLSS-NRLTHVD--LSLIPSLFHANVSYNLLS-----TLAI 209

Query: 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
              +  L    N +   +        +LT L L  N       + +     L  +DL  N
Sbjct: 210 PIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264

Query: 285 NLSGNVYI-EELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
            L     I      K++ L  L++S N L  +      I        L L+  +L     
Sbjct: 265 ELE---KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---TLKVLDLSHNHLLHVER 318

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
                D+LE L L  N I   +     +     L+ + LS+N            L+ ++ 
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKLSTHH----TLKNLTLSHNDWDCNSL---RALFRNVA 370

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
              +        +    E  +    S+     +L  ++   + +  +  +    S     
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ-IADIFPSWLGTL 522
               S          +    +  L+  +    A    L    +   Q +  +       L
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
              ++      R    + +  T     +   +  +  R
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 46/161 (28%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           +  ++ L +   L  + L+ N     KI                   + +L+ L +S N 
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYH------------PFVKMQRLERLYISNNR 289

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
                                       +     +   +  L  ++   N L   +    
Sbjct: 290 ----------------------------LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQ 320

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263
              +RL  L L  N +   L   + +   L  L LS N + 
Sbjct: 321 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (327), Expect = 4e-33
 Identities = 69/341 (20%), Positives = 122/341 (35%), Gaps = 72/341 (21%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
             +L L++N++         +L  L  L L  N+     P + + L +LE L L  N L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 288 GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347
               + E +P  K+L  L +  N ++ + ++           F GL              
Sbjct: 114 ---ELPEKMP--KTLQELRVHENEITKVRKSV----------FNGL-------------- 144

Query: 348 QDQLELLDLSANKIPGKI--PGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
            +Q+ +++L  N +       G    +    L ++ ++   IT   +G    L   L  L
Sbjct: 145 -NQMIVVELGTNPLKSSGIENGAFQGMK--KLSYIRIADTNITTIPQG----LPPSLTEL 197

Query: 406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465
            L  NK+     +   S                  L  LN+L  L LS N +S V     
Sbjct: 198 HLDGNKITK---VDAAS------------------LKGLNNLAKLGLSFNSISAVDNG-- 234

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI------FPSWL 519
                  N  +L+ + L++N L  ++P  LA+   ++ + L NN I+ I       P + 
Sbjct: 235 ----SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
                   + L  N       +P T         + L + +
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (290), Expect = 3e-28
 Identities = 63/317 (19%), Positives = 105/317 (33%), Gaps = 58/317 (18%)

Query: 195 PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
                NL  L  +    N+++   P   A L +L  L L  NQL+  LP        L  
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQE 125

Query: 255 LDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314
           L +  N+      S  + L ++  ++L +N L  +         +K L  + ++  N++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 315 ITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
           I +                                 L  L L  NKI  K+    L    
Sbjct: 186 IPQGLP----------------------------PSLTELHLDGNKI-TKVDAASLKGLN 216

Query: 375 GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLT 434
            NL  + LS+N I+  D GS+      L  L L +NKL                      
Sbjct: 217 -NLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV--------------------- 253

Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI--P 492
            K+   L +   ++V+ L +N +S +               +   + L  N +Q     P
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 493 RSLANCTMLEFLDLGNN 509
            +     +   + LGN 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.2 bits (240), Expect = 9e-22
 Identities = 63/329 (19%), Positives = 110/329 (33%), Gaps = 63/329 (19%)

Query: 401 DLVTLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
            L  +      L+  P  +PP++ +  L  NN +T        NL +L  L L +N +S 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519
           + P        F     L+ + LS N L+  +P  +     L+ L +  N+I  +  S  
Sbjct: 91  ISP------GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVF 141

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVA 579
             L ++ V+ L  N       E        KL  I ++    +  +P             
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-------- 192

Query: 580 NKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFL 637
                                         SL  ++     IT V+             L
Sbjct: 193 ------------------------------SLTELHLDGNKITKVDAASLKGLNN----L 218

Query: 638 TGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697
             + LS N +      S++    L  L+L+ N L+  +P  L +   ++ + L NNN+S 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

Query: 698 ------EIPRQLAELTSLAVFDVSDNNLT 720
                   P    +  S +   +  N + 
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 53/316 (16%), Positives = 91/316 (28%), Gaps = 62/316 (19%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                 +L++L  L L +N    SKI               +   L KL+ L LS+N   
Sbjct: 68  KDGDFKNLKNLHTLILINNKI--SKISPG------------AFAPLVKLERLYLSKNQLK 113

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTGPI--PNW 221
                          L  L +   N I +        L Q+  +    N L         
Sbjct: 114 ELPEKMPK------TLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
              + +L+ + +    +   +P   G    LT L L  N+      +S+  L  L  L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 282 HSNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKE 340
             N++S    ++   L     L  L L+ N L  +                         
Sbjct: 224 SFNSISA---VDNGSLANTPHLRELHLNNNKLVKVPGG-----------LADHKY----- 264

Query: 341 FLDFLNDQDQLELLDLSANKI----PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVV 396
                     ++++ L  N I             N    +   V+L  N +  ++     
Sbjct: 265 ----------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 397 LLW-TDLVTLDLRSNK 411
                    + L + K
Sbjct: 315 FRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 72/290 (24%), Positives = 114/290 (39%), Gaps = 47/290 (16%)

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC 498
           P+ C    LRV+  S   L  V P+ L          +  ++DL +N +         N 
Sbjct: 26  PFRCQ-CHLRVVQCSDLGLEKV-PKDLP--------PDTALLDLQNNKITEIKDGDFKNL 75

Query: 499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
             L  L L NN+I+ I P     L +L+ L L  N+   E+ E     +   L+ + +  
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK----MPKTLQELRVHE 130

Query: 559 NRFSGKLPSKYFQCWNAIKVANKSQLK--YMQDQPGQSLNYILPSS-SAYIFD--YSLQY 613
           N  + K+    F           +Q+    +        N +  S      F     L Y
Sbjct: 131 NEIT-KVRKSVFN--------GLNQMIVVELGT------NPLKSSGIENGAFQGMKKLSY 175

Query: 614 IYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT-SISELKGLNCLNLSGNN 670
           I      IT + +G+  +       LT + L  NK I K+   S+  L  L  L LS N+
Sbjct: 176 IRIADTNITTIPQGLPPS-------LTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS 227

Query: 671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
           +      SL N   L  L L+NN L  ++P  LA+   + V  + +NN++
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 31/203 (15%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            + L ++ +  S   + +   ++ L ++ +AD N   + IP                G  
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--TTIPQ---------------GLP 191

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINF 209
             L  L L  N  +   +AS         L+ L L+  N I    +  L N   L  ++ 
Sbjct: 192 PSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHL 247

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRG------YLPSQIGSLTQLTALDLSCNQFQ 263
           + N+L   +P  LA+   + ++ L +N +          P         + + L  N  Q
Sbjct: 248 NNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 264 GPV--PSSISELKRLEYLDLHSN 284
                PS+   +     + L + 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (324), Expect = 1e-31
 Identities = 63/343 (18%), Positives = 116/343 (33%), Gaps = 49/343 (14%)

Query: 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
              +L L  N+++     +  S   L  L+L+ N      P + + L  L  L L SN L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 287 SGNVYI-EELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFL 345
                I   +   L +L  L +S N + ++              F  L            
Sbjct: 93  K---LIPLGVFTGLSNLTKLDISENKIVILLDYM----------FQDL------------ 127

Query: 346 NDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
                L+ L++  N +          +   +L+ + L    +T     ++  L   L+ L
Sbjct: 128 ---YNLKSLEVGDNDLVYISHRAFSGLN--SLEQLTLEKCNLTSIPTEALSHL-HGLIVL 181

Query: 406 DLRSNKLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
            LR   +     I          +  L +S+      + P      +L  L ++H  L+ 
Sbjct: 182 RLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519
           V           ++   L+ ++LS+N +       L     L+ + L   Q+A + P   
Sbjct: 239 V------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
             L  L+VL +  N+    + E         L  + L  N  +
Sbjct: 293 RGLNYLRVLNVSGNQLT-TL-EESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 2e-29
 Identities = 75/363 (20%), Positives = 125/363 (34%), Gaps = 64/363 (17%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINF 209
           T+ + L+L +N   + +   F+       L  L L   N++         NL  L  +  
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGL 87

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS 269
             N+L          L+ LT L +  N++   L      L  L +L++  N        +
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 270 ISELKRLEYLDLHSNNLSGNVYIE-ELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKF 328
            S L  LE L L   NL+    I  E L  L  LIVL L   N++ I   +         
Sbjct: 148 FSGLNSLEQLTLEKCNLT---SIPTEALSHLHGLIVLRLRHLNINAIRDYS--------- 195

Query: 329 VFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388
            F  L                +L++L++S       +    L     NL  +++++  +T
Sbjct: 196 -FKRLY---------------RLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLT 237

Query: 389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLR 448
                +V  L   L  L+L  N +     I                      L  L  L+
Sbjct: 238 AVPYLAVRHL-VYLRFLNLSYNPIST---IEGSM------------------LHELLRLQ 275

Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508
            + L    L+ V          F+    L+++++S N L         +   LE L L +
Sbjct: 276 EIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 509 NQI 511
           N +
Sbjct: 330 NPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 2e-26
 Identities = 80/371 (21%), Positives = 132/371 (35%), Gaps = 74/371 (19%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
             LLDL  N+I         +    +L+ + L+ N+++  + G+   L  +L TL LRSN
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP--HLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSN 90

Query: 411 KLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470
           +L+    IP                        L++L  LD+S N +  +L         
Sbjct: 91  RLKL---IPLGV------------------FTGLSNLTKLDISENKIVILLDYM------ 123

Query: 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLML 530
           F++  NLK +++  N L     R+ +    LE L L    +  I    L  L  L VL L
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 531 QFNRFHGEIGEPDTGFVF-PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQD 589
           +    +  I   D  F    +L+++++SH  +   +                        
Sbjct: 184 RHLNIN-AI--RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------ 222

Query: 590 QPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIG 649
             G +L  +               I   ++T V      +       L  + LS N  I 
Sbjct: 223 --GLNLTSL--------------SITHCNLTAVPYLAVRHLVY----LRFLNLSYNP-IS 261

Query: 650 KIPTSI-SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTS 708
            I  S+  EL  L  + L G  L    P +   L  L  L++S N L+         + +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 709 LAVFDVSDNNL 719
           L    +  N L
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 4e-25
 Identities = 62/355 (17%), Positives = 101/355 (28%), Gaps = 70/355 (19%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
           +        HLE L L +N    S +               +  NL  L+ L L  N   
Sbjct: 48  NQDEFASFPHLEELELNENIV--SAVEPG------------AFNNLFNLRTLGLRSNRLK 93

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTGPIPNWLA 223
                 F+     + L+ L ++  N I         +L  L  +    N L        +
Sbjct: 94  LIPLGVFT---GLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            LN L  L+L+   L       +  L  L  L L           S   L RL+ L++  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
                   +        +L  L ++  NL+ +                 L          
Sbjct: 210 WPYL--DTMTPNCLYGLNLTSLSITHCNLTAVPYLA----------VRHLVY-------- 249

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
                  L  L+LS N I       L  +    LQ + L    +   +  +   L   L 
Sbjct: 250 -------LRFLNLSYNPISTIEGSMLHELL--RLQEIQLVGGQLAVVEPYAFRGL-NYLR 299

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
            L++  N+L     +                        ++ +L  L L  N L+
Sbjct: 300 VLNVSGNQLTT---LEESV------------------FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-24
 Identities = 73/388 (18%), Positives = 123/388 (31%), Gaps = 91/388 (23%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435
             + ++L  N I   ++         L  L+L  N +     + P +             
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSA---VEPGA------------- 75

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
                  NL +LR L L  N L  +         +F   +NL  +D+S N +   +    
Sbjct: 76  -----FNNLFNLRTLGLRSNRLKLI------PLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRII 554
            +   L+ L++G+N +  I       L  L+ L L+       I  P         L ++
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI--PTEALSHLHGLIVL 181

Query: 555 DLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYI 614
            L H   +  +    F+    +KV   S   Y+       L              +L  +
Sbjct: 182 RLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-----------GLNLTSL 229

Query: 615 YAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT-SISELKGLNCLNLSGNNLLG 673
                                      +++   +  +P  ++  L  L  LNLS N +  
Sbjct: 230 S--------------------------ITHCN-LTAVPYLAVRHLVYLRFLNLSYNPI-S 261

Query: 674 HIPS-SLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQGKQFNT 731
            I    L  L  L+ + L    L+  +       L  L V +VS N LT          T
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT----------T 310

Query: 732 FENSSFEGNPGLC-----GKPLSRNCEI 754
            E S F     L        PL+ +C +
Sbjct: 311 LEESVFHSVGNLETLILDSNPLACDCRL 338

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 61/308 (19%), Positives = 104/308 (33%), Gaps = 48/308 (15%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C+     V          V P+ +         T  +++DL  N ++       A+   L
Sbjct: 9   CSAQDRAV-LCHRKRFVAV-PEGIP--------TETRLLDLGKNRIKTLNQDEFASFPHL 58

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNR 560
           E L+L  N ++ + P     L  L+ L L+ NR    I  P   F     L  +D+S N+
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI--PLGVFTGLSNLTKLDISENK 115

Query: 561 FSGKLPSKYFQCWNAIKV--ANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS 618
               L    FQ    +K      + L Y+  +    LN             SL+ +    
Sbjct: 116 IV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-------------SLEQLTLEK 161

Query: 619 --ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP 676
             +T +      +       L  + L +  +      S   L  L  L +S    L  + 
Sbjct: 162 CNLTSIPTEALSHLHG----LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 677 SSLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQGKQFNTFENS 735
            +      L SL +++ NL+  +P   +  L  L   ++S N ++          T E S
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS----------TIEGS 266

Query: 736 SFEGNPGL 743
                  L
Sbjct: 267 MLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 43/172 (25%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151
           L ++      ++  + +  +  +L  LS+   N   + +P              ++ +L 
Sbjct: 205 LEISHWPYLDTM--TPNCLYGLNLTSLSITHCNL--TAVPYL------------AVRHLV 248

Query: 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL 211
            L+ L LS N  S+   +                               L +L  I    
Sbjct: 249 YLRFLNLSYNPISTIEGSMLH---------------------------ELLRLQEIQLVG 281

Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263
            QL    P     LN L +L++  NQL     S   S+  L  L L  N   
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 637 LTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNN 694
           LT + +S NK I  +   +  +L  L  L +  N+L  +I   +   L  LE L L   N
Sbjct: 106 LTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCN 163

Query: 695 LSGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCE 753
           L+  IP + L+ L  L V  +   N+              + SF+    L    +S    
Sbjct: 164 LT-SIPTEALSHLHGLIVLRLRHLNIN----------AIRDYSFKRLYRLKVLEISHWPY 212

Query: 754 ISESS 758
           +   +
Sbjct: 213 LDTMT 217

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (322), Expect = 1e-31
 Identities = 75/373 (20%), Positives = 131/373 (35%), Gaps = 42/373 (11%)

Query: 195 PSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLT 253
            +    L  L ++  +       I  N    L+ L IL L  NQ           L  L 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 254 ALDLSCNQFQGPV--PSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311
            L L+     G V   +    L  LE L L  NN+   +        ++   VL L+ N 
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNK 165

Query: 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD---------QLELLDLSANKIP 362
           +  I    +       F  L L+S  L++  ++    +          +  LDLS N   
Sbjct: 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 363 GKIPGWLLNVTTGN-----------LQFVNLSYNLITGFDRGSVV-LLWTDLVTLDLRSN 410
             +     +   G                +  +      D  +   L  + + T DL  +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285

Query: 411 KLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPW-LCNLNSLRVLDLSHNFLSGVLPQ 463
           K+     +        + +  L ++ N +  K+       L  L  L+LS NFL  +   
Sbjct: 286 KIFA---LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSI--- 338

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
              +S++F+N   L+++DLS+N ++    +S      L+ L L  NQ+  +       L 
Sbjct: 339 ---DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395

Query: 524 ELKVLMLQFNRFH 536
            L+ + L  N + 
Sbjct: 396 SLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  123 bits (311), Expect = 4e-30
 Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 60/386 (15%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
             + Y++  LN +        + L  L  L ++       + +     L+ L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
           QF      + + L  LE L L   NL G V        L SL +L L  NN+        
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK------- 142

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
             ++Q    FL +                   +LDL+ NK+       LLN    +   +
Sbjct: 143 --KIQPASFFLNMRR---------------FHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 381 NLSYNLITGFDRGSVVLLW-------TDLVTLDLRSNKLQGPLP-----IPPESTIHYLV 428
            LS   +   +   +           T + TLDL  N  +  +          + I  L+
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 429 SNNLLTGKLAPWLCNL-------------NSLRVLDLSHNFLSGVLPQCLSNSKIFKNAT 475
            +N      +    N              + ++  DLS + +  +         +F + T
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL------LKSVFSHFT 299

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           +L+ + L+ N +      +    T L  L+L  N +  I       L +L+VL L +N  
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 536 HGEIGEPDTGFV-FPKLRIIDLSHNR 560
              +   D  F+  P L+ + L  N+
Sbjct: 360 R-AL--GDQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 75/349 (21%), Positives = 117/349 (33%), Gaps = 37/349 (10%)

Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA 309
             +  +DLS N       +S S L+ L++L +        +        L SLI+L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDY 88

Query: 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFL---DFLNDQDQLELLDLSANKIPGKIP 366
           N    +     N  L N    L L  CNL   +   +F      LE+L L  N I    P
Sbjct: 89  NQFLQLETGAFN-GLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 367 GWLLNVTTGNLQFVNLSYNLITGFDRGSVV-LLWTDLVTLDLRSNKLQGPLPIPPES--- 422
                        ++L++N +       ++         L L S  LQ            
Sbjct: 147 ASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 423 ---------TIHYLVSNNL--LTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF 471
                    T   L  N       K          ++ L LS+++  G      +     
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 472 KNA------TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL 525
                    + +K  DLS + +   +    ++ T LE L L  N+I  I  +    L  L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 526 KVLMLQFNRFHGEIGEPDTGFVF---PKLRIIDLSHNRFSGKLPSKYFQ 571
             L L  N     +G  D+  +F    KL ++DLS+N     L  + F 
Sbjct: 326 LKLNLSQNF----LGSIDSR-MFENLDKLEVLDLSYNHIRA-LGDQSFL 368

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 76/381 (19%), Positives = 122/381 (32%), Gaps = 61/381 (16%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
            L+ L +        I        + +L  + L YN     + G+   L  +L  L L  
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQ 112

Query: 410 NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
             L G   +                         L SL +L L  N +  + P       
Sbjct: 113 CNLDG-AVLSGNF------------------FKPLTSLEMLVLRDNNIKKIQPASF---- 149

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTM--LEFLDLGNNQIADIFPSWLGTLPELKV 527
            F N     ++DL+ N ++      L N        L L +  + D+   WLG       
Sbjct: 150 -FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK---- 204

Query: 528 LMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVAN---KSQL 584
                       G P        +  +DLS N F   +  ++F      K+ +    +  
Sbjct: 205 -----------CGNPFK---NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 585 KYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIIL 642
                    +       +   +    ++        I  + K +  ++      L  + L
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD----LEQLTL 306

Query: 643 SNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGEIP 700
           + N+ I KI  +    L  L  LNLS  N LG I S    NL  LE LDLS N++   + 
Sbjct: 307 AQNE-INKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 701 RQL-AELTSLAVFDVSDNNLT 720
            Q    L +L    +  N L 
Sbjct: 364 DQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 61/333 (18%), Positives = 106/333 (31%), Gaps = 38/333 (11%)

Query: 400 TDLVTLDLRSNKLQGPLPIPPESTIHY------LVSNNLLTGKLAPWLC-NLNSLRVLDL 452
             +  +DL  N +     +   S           V        +       L+SL +L L
Sbjct: 30  AHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 453 SHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI--PRSLANCTMLEFLDLGNNQ 510
            +N     L      +  F    NL+++ L+   L G +         T LE L L +N 
Sbjct: 87  DYNQFL-QLE-----TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 511 IADIFPSWL-GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKY 569
           I  I P+     +    VL L FN+      E    F      ++ LS       +   +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYW 199

Query: 570 FQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN 629
                       + +  +              S A  F  ++      S+ + N     +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNG-----FKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL-GNLTVLESL 688
               +NF       N    G   + +         +LS + +   +  S+  + T LE L
Sbjct: 255 SFGHTNFKD---PDNFTFKGLEASGVKTC------DLSKSKI-FALLKSVFSHFTDLEQL 304

Query: 689 DLSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLT 720
            L+ N ++ +I       LT L   ++S N L 
Sbjct: 305 TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 72/376 (19%), Positives = 119/376 (31%), Gaps = 81/376 (21%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL 150
            L LT   + G++ S +    L  LE L L DNN        +I   S F        N+
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI------KKIQPASFFL-------NM 153

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
            +   L+L+ N   S               + L L++I L                 + +
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITL----------------QDMN 196

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTAL-------------DL 257
              L             +T L L  N  +  +  +       T +               
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 258 SCNQFQGPVPSSISELKR--LEYLDLHSNNLSGNVYIEELLPK-LKSLIVLFLSANNLSL 314
               F+ P   +   L+   ++  DL  + +     + + +      L  L L+ N ++ 
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA---LLKSVFSHFTDLEQLTLAQNEINK 313

Query: 315 ITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTT 374
           I  N           F GL                 L  L+LS N + G I   +     
Sbjct: 314 IDDN----------AFWGLT---------------HLLKLNLSQNFL-GSIDSRMFENLD 347

Query: 375 GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLT 434
             L+ ++LSYN I      S + L  +L  L L +N+L+      P+     L S   + 
Sbjct: 348 -KLEVLDLSYNHIRALGDQSFLGL-PNLKELALDTNQLKS----VPDGIFDRLTSLQKIW 401

Query: 435 GKLAPWLCNLNSLRVL 450
               PW C+   +  L
Sbjct: 402 LHTNPWDCSCPRIDYL 417

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 38/281 (13%), Positives = 86/281 (30%), Gaps = 40/281 (14%)

Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL-GTLPELKVLMLQFN 533
            ++  +DLS N +      S +    L+FL +       +  +     L  L +L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 534 RFHGEIGEPDTGFV-FPKLRIIDLSHNRF-SGKLPSKYFQCWNAIKVANKSQLKYMQDQP 591
           +F  ++      F     L ++ L+        L   +F+          + L+ +  + 
Sbjct: 90  QFL-QL--ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL--------TSLEMLVLRD 138

Query: 592 GQSLNYILPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKL 647
              +  I P+S    F        +      +  + +             T + LS+  L
Sbjct: 139 NN-IKKIQPAS---FFLNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITL 192

Query: 648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT 707
                            +++   L      +    T + +LDLS N     + ++  +  
Sbjct: 193 ----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 708 SLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL 748
           +         + +  +        F++       GL    +
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  127 bits (322), Expect = 1e-31
 Identities = 84/469 (17%), Positives = 151/469 (32%), Gaps = 82/469 (17%)

Query: 107 SSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS- 165
               +++       A + +  +  P         +          +   LEL+    SS 
Sbjct: 28  VEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW---- 221
           P             L  L  +  N + E P    +L  L   N +L  L+   P      
Sbjct: 87  PELP--------PHLESLVASC-NSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLG 137

Query: 222 -----------LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI 270
                      L N + L I+ + +N L+  LP    SL  +       NQ +      +
Sbjct: 138 VSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE--ELPEL 191

Query: 271 SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF 330
             L  L  +   +N+L       +L     SL  +    N L  +        L      
Sbjct: 192 QNLPFLTAIYADNNSLK------KLPDLPLSLESIVAGNNILEELPELQNLPFLTT---- 241

Query: 331 LGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWL-----------LNVTTGNLQF 379
           +   +  LK   D     + L + D     +P                  L+    NL +
Sbjct: 242 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE-STIHYL-VSNNLLTGKL 437
           +N S N I      S+  L   L  L++ +NKL     +P     +  L  S N L  ++
Sbjct: 302 LNASSNEIR-----SLCDLPPSLEELNVSNNKLIE---LPALPPRLERLIASFNHLA-EV 352

Query: 438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSN----------SKIFKNATNLKMIDLSHNLL 487
                NL   + L + +N L    P    +          +++ +   NLK + +  N L
Sbjct: 353 PELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
           +   P    +   +E L + + ++ D +     T  +L+  + + +  H
Sbjct: 409 R-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (298), Expect = 2e-28
 Identities = 82/509 (16%), Positives = 159/509 (31%), Gaps = 98/509 (19%)

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
            +   L      S+ L   +P +  ++   T    + ++++   P    E + +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFL 342
                            +    L L+   LS +     ++        L  +  +L E  
Sbjct: 67  DC-------------LDRQAHELELNNLGLSSLPELPPHLE------SLVASCNSLTELP 107

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDL 402
           +       L + + +   +    P          L+++ +S N +        +   + L
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKLP---ELQNSSFL 155

Query: 403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
             +D+ +N L+  LP  P S       NN L  +L P L NL  L  +   +N L     
Sbjct: 156 KIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNNSLK---- 208

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                 K+     +L+ I   +N+L       L N   L  +   NN +  + P    +L
Sbjct: 209 ------KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTL-PDLPPSL 259

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPS-KYFQCWNAIKVANK 581
             L V                       L + +   +  S   P+  Y    +       
Sbjct: 260 EALNVRDNYLTDLPELPQS------LTFLDVSENIFSGLSELPPNLYYLNASSN------ 307

Query: 582 SQLKYMQDQPGQ------SLNYI--LPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYG 631
            +++ + D P        S N +  LP+         L+ + A    +  V +  +    
Sbjct: 308 -EIRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIASFNHLAEVPELPQ---- 357

Query: 632 KVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLS 691
                L  + +  N L  + P     ++     +L  N+ L  +P    NL     L + 
Sbjct: 358 ----NLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLKQ---LHVE 404

Query: 692 NNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
            N L  E P     +  L    ++   + 
Sbjct: 405 TNPLR-EFPDIPESVEDL---RMNSERVV 429

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (289), Expect = 3e-27
 Identities = 72/379 (18%), Positives = 133/379 (35%), Gaps = 65/379 (17%)

Query: 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS 248
           + + E P    N+   T      ++     P        + +  L+              
Sbjct: 21  SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------L 69

Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308
             Q   L+L+       +P        LE L    N+L+    + EL   LKSL+V   +
Sbjct: 70  DRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT---ELPELPQSLKSLLVDNNN 122

Query: 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGW 368
              LS +      + +          S N  E L  L +   L+++D+  N +  K+P  
Sbjct: 123 LKALSDLPPLLEYLGV----------SNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 369 LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428
                  +L+F+    N +       +  L   L  +   +N L+  LP  P S    + 
Sbjct: 172 P-----PSLEFIAAGNNQLEELP--ELQNL-PFLTAIYADNNSLKK-LPDLPLSLESIVA 222

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
            NN+L     P L NL  L  +   +N L            +     +L+ +++  N L 
Sbjct: 223 GNNILE--ELPELQNLPFLTTIYADNNLL----------KTLPDLPPSLEALNVRDNYLT 270

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
             +P    + T L+  +   + ++++ P+       L  L    N        P      
Sbjct: 271 -DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCDLP------ 316

Query: 549 PKLRIIDLSHNRFSGKLPS 567
           P L  +++S+N+   +LP+
Sbjct: 317 PSLEELNVSNNKLI-ELPA 334

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 5e-22
 Identities = 67/363 (18%), Positives = 120/363 (33%), Gaps = 57/363 (15%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFS------GQVPSLGNLTKLKC 155
            +     L +   L+ + + +N+    K+P    +L   +       ++P L NL  L  
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA 199

Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLT 215
           +    N+         S       L  +   N N++ E P  L NL  LT I  D N L 
Sbjct: 200 IYADNNSLKKLPDLPLS-------LESIVAGN-NILEELPE-LQNLPFLTTIYADNNLLK 250

Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR 275
             +P+   +L  L +           LP    SLT L   +   +               
Sbjct: 251 T-LPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLS-------ELPPN 298

Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
           L YL+  SN +        L     SL  L +S N L  +      +        L  + 
Sbjct: 299 LYYLNASSNEIR------SLCDLPPSLEELNVSNNKLIELPALPPRLE------RLIASF 346

Query: 336 CNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV 395
            +L E  +       L+ L +  N +  + P         +++ + ++ +L    +    
Sbjct: 347 NHLAEVPELP---QNLKQLHVEYNPLR-EFPDIP-----ESVEDLRMNSHLAEVPE---- 393

Query: 396 VLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
             L  +L  L + +N L+   P  PES     +++  +           + L      H+
Sbjct: 394 --LPQNLKQLHVETNPLRE-FPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 456 FLS 458
              
Sbjct: 451 HHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 1e-21
 Identities = 59/334 (17%), Positives = 103/334 (30%), Gaps = 55/334 (16%)

Query: 241 YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL----- 295
           ++  +  S T L       +     +P     +K         +    N           
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 296 ----LPKL--KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD 349
               L     +    L L+   LS +     ++        L  +  +L E  +      
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLE------SLVASCNSLTELPELPQSLK 114

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
            L + + +   +    P          L+++ +S N +        +   + L  +D+ +
Sbjct: 115 SLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKLP---ELQNSSFLKIIDVDN 162

Query: 410 NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
           N L+  LP  P S       NN L  +L P L NL  L  +   +N L           K
Sbjct: 163 NSLKK-LPDLPPSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNNSL----------KK 209

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
           +     +L+ I   +N+L       L N   L  +   NN +  + P    +L  L V  
Sbjct: 210 LPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRD 266

Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563
                                L  +D+S N FSG
Sbjct: 267 NYLTDLPELPQ---------SLTFLDVSENIFSG 291

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 60/320 (18%), Positives = 98/320 (30%), Gaps = 58/320 (18%)

Query: 426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFK-------NATNLK 478
              S+NL    +     N+ S      + +      P      +                
Sbjct: 17  LRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 479 MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE 538
            ++L++  L   +P    +   LE L    N + ++ P    +L  L V           
Sbjct: 75  ELELNNLGLS-SLPELPPH---LESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDL 129

Query: 539 IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS--QLKYMQDQPGQSLN 596
                     P L  + +S+N+   KLP    Q  + +K+ +     LK + D P     
Sbjct: 130 P---------PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPP---- 173

Query: 597 YILPSSSAYIFDYSLQYIYAYSITMVNKGIEM-NYGKVSNFLTGIILSNNKLIGKIPTSI 655
                        SL++I A +    N+  E+     +   LT I   NN L        
Sbjct: 174 -------------SLEFIAAGN----NQLEELPELQNLPF-LTAIYADNNSL----KKLP 211

Query: 656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715
                L  +    N L       L NL  L ++   NN L   +P     L +L V D  
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNY 268

Query: 716 DNNLTGQIPQGKQFNTFENS 735
             +L          +  EN 
Sbjct: 269 LTDLPELPQSLTFLDVSENI 288

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  125 bits (315), Expect = 2e-31
 Identities = 64/341 (18%), Positives = 112/341 (32%), Gaps = 73/341 (21%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
            T+L L++N +          L  L AL L  N+       + S L++L+ L +  N+L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 288 GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347
               I   LP   SL+ L +  N +  + +            F GL +            
Sbjct: 116 ---EIPPNLP--SSLVELRIHDNRIRKVPKGV----------FSGLRN------------ 148

Query: 348 QDQLELLDLSANKIPGKI--PGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
              +  +++  N +      PG    +    L ++ +S   +TG  +     L   L  L
Sbjct: 149 ---MNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKD----LPETLNEL 198

Query: 406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL 465
            L  NK+Q    I  E                   L   + L  L L HN +  +     
Sbjct: 199 HLDHNKIQA---IELED------------------LLRYSKLYRLGLGHNQIRMI----- 232

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPS------WL 519
             +        L+ + L +N L  R+P  L +  +L+ + L  N I  +  +      + 
Sbjct: 233 -ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
                   + L  N       +P T         I   + +
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 59/353 (16%), Positives = 116/353 (32%), Gaps = 74/353 (20%)

Query: 401 DLVTLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
            L  +      L+  P  I P++T+  L  NN ++         L  L  L L +N +S 
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519
           +        K F     L+ + +S N L    P   ++   L  L + +N+I  +     
Sbjct: 93  IHE------KAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVF 143

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVA 579
             L  +  + +  N       EP   F   KL  + +S  + +  +P    +        
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGA-FDGLKLNYLRISEAKLT-GIPKDLPE-------- 193

Query: 580 NKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFL 637
                                         +L  ++     I  +     + Y K    L
Sbjct: 194 ------------------------------TLNELHLDHNKIQAIELEDLLRYSK----L 219

Query: 638 TGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697
             + L +N++      S+S L  L  L+L  N  L  +P+ L +L +L+ + L  NN++ 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 698 EIP-------RQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGL 743
           ++            +        + +N +         +   + ++F      
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVP--------YWEVQPATFRCVTDR 322

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 59/349 (16%), Positives = 103/349 (29%), Gaps = 80/349 (22%)

Query: 114 HLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSW 173
               L L +N+   S++  +                L  L  L L  N  S  H  +FS 
Sbjct: 55  DTTLLDLQNNDI--SELRKD------------DFKGLQHLYALVLVNNKISKIHEKAFS- 99

Query: 174 IAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233
                +L  L ++  N + E P  L   + L  +    N++        + L  +  + +
Sbjct: 100 --PLRKLQKLYISK-NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154

Query: 234 KSNQLR-GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYI 292
             N L             +L  L +S  +  G +P  +   + L  L L  N +     I
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ---AI 208

Query: 293 EE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQL 351
           E   L +   L  L L  N + +I   +             L +               L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGS----------LSFLPT---------------L 243

Query: 352 ELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS-----VVLLWTDLVTLD 406
             L L  NK+  ++P  L ++    LQ V L  N IT             +       + 
Sbjct: 244 RELHLDNNKL-SRVPAGLPDLK--LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
           L +N +     + P +                     +     +   + 
Sbjct: 301 LFNNPVP-YWEVQPAT------------------FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 33/213 (15%), Positives = 62/213 (29%), Gaps = 28/213 (13%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                  LR++  + +  N    S          +F G         KL  L +S+   +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEP-----GAFDGL--------KLNYLRISEAKLT 185

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTGPIPNWLA 223
                          L+ L L + N I       L+  ++L  +    NQ+       L+
Sbjct: 186 GIPKDLPE------TLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG------PVPSSISELKRLE 277
            L  L  L L +N+L   +P+ +  L  L  + L  N                 +     
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 278 YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
            + L +N +            +   + +     
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (316), Expect = 2e-30
 Identities = 83/508 (16%), Positives = 160/508 (31%), Gaps = 82/508 (16%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259
           +L++L  +    N++     +       L  L L  N+L   +         L  LDLS 
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSF 99

Query: 260 NQFQG-PVPSSISELKRLEYLDLHSNNLSG-------NVYIEELLPKLKSLIVLFLSANN 311
           N F   P+      + +L++L L + +L         ++ I ++L  L            
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159

Query: 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLN 371
           L      +++I       F  +   ++K   +      +  L D   +     +     N
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 372 VTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNN 431
               NL   N+       F R   ++  T +    + + KLQG L               
Sbjct: 220 PKLSNLTLNNIETTW-NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG------ 272

Query: 432 LLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI 491
                      +L +L +  +  +            S I++  +N+ + + + +  +   
Sbjct: 273 ----------TSLKALSIHQVVSDVFG------FPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 492 PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF--- 548
               +  +    LD  NN + D      G L EL+ L+LQ N+            +    
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK---ELSKIAEMTTQM 373

Query: 549 PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY-ILPSSSAYIF 607
             L+ +D+S N  S                     L  +      +++  IL  +     
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCS--------WTKSLLSL------NMSSNILTDTIFRCL 419

Query: 608 DYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLS 667
              ++ +                           L +NK+   IP  + +L+ L  LN++
Sbjct: 420 PPRIKVLD--------------------------LHSNKI-KSIPKQVVKLEALQELNVA 452

Query: 668 GNNLLGHIPSSLGNLTVLESLDLSNNNL 695
            N L          LT L+ + L  N  
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 4e-24
 Identities = 81/468 (17%), Positives = 159/468 (33%), Gaps = 59/468 (12%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPS---------EIMNLSSFSGQVPSLGNLTKLKC 155
            +S +  L  L  L ++ N      +           E ++LS       S      LK 
Sbjct: 37  WTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH 94

Query: 156 LELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
           L+LS N F + P    F      ++L +L L+  +L       + +L     +       
Sbjct: 95  LDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
                     L      SL            I  ++  T  +L  +  +  +  +     
Sbjct: 152 GEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF--LG 332
                 L +N    N+ +  +     S I +     + ++   +  N++LQ +  F    
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 333 LASCNLKE--FLDFLNDQDQ------------LELLDLSANK---IPGKIPGWLLNVTTG 375
            +  +LK       ++D               + + + + +    +    P  +      
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI-----S 324

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE------STIHYLVS 429
               ++ S NL+T           T+L TL L+ N+L+  L    E      S     +S
Sbjct: 325 PFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKE-LSKIAEMTTQMKSLQQLDIS 382

Query: 430 NNLLTGKLAPWLC-NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
            N ++       C    SL  L++S N L+  + +CL           +K++DL  N ++
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--------PRIKVLDLHSNKIK 434

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
             IP+ +     L+ L++ +NQ+  +       L  L+ + L  N + 
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.1 bits (239), Expect = 8e-21
 Identities = 56/373 (15%), Positives = 115/373 (30%), Gaps = 37/373 (9%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
             +L++S N I       +L+++   L+ + +S+N I   D         +L  LDL  N
Sbjct: 23  TTILNISQNYISELWTSDILSLS--KLRILIISHNRIQYLDISVFKFN-QELEYLDLSHN 79

Query: 411 KLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470
           KL   +   P                         +L+ LDLS N         L   K 
Sbjct: 80  KLVK-ISCHP-----------------------TVNLKHLDLSFNAF-----DALPICKE 110

Query: 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLML 530
           F N + LK + LS   L+      +A+  + + L +               L +     L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDFNTESL 168

Query: 531 QFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590
                  +            +  ++LS+ +   +     +      K+    +L  +   
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII---LSNNKL 647
             ++           ++  ++ Y    ++ +  +    ++      L  +    + ++  
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT 707
                        +N  N + +            ++    LD SNN L+  +      LT
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348

Query: 708 SLAVFDVSDNNLT 720
            L    +  N L 
Sbjct: 349 ELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 37/309 (11%)

Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508
           ++D S N L  V P+ LS            ++++S N +       + + + L  L + +
Sbjct: 4   LVDRSKNGLIHV-PKDLS--------QKTTILNISQNYISELWTSDILSLSKLRILIISH 54

Query: 509 NQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSK 568
           N+I  +  S      EL+ L L  N+       P        L+ +DLS N F      K
Sbjct: 55  NRIQYLDISVFKFNQELEYLDLSHNKLVKISCHP-----TVNLKHLDLSFNAFDALPICK 109

Query: 569 YFQCWNAIKV-------------ANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIY 615
            F   + +K                 + L   +        Y        + D++ + ++
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 616 AYSITMVNKGIEMNYG-------KVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSG 668
               T       ++         ++SN    +  +       I   +     L+ L L+ 
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 669 NNLLGHIPSSLGNL---TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725
                +    +  L   T +    +SN  L G++  +  + +  ++  +S + +   +  
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 726 GKQFNTFEN 734
             Q   +E 
Sbjct: 290 FPQSYIYEI 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 2e-26
 Identities = 49/339 (14%), Positives = 101/339 (29%), Gaps = 44/339 (12%)

Query: 400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVS--NNLLTGKLAPW-LCNLNSLRVLDLSHNF 456
           +    L  + +    P        +       N       + W   N N+ ++   +   
Sbjct: 12  SGRENLYFQGSTALRPYH----DVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516
           L       L ++           ++L    L  + P      + L+ + +    + ++ P
Sbjct: 68  LK-ATADLLEDAT----QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-P 120

Query: 517 SWLGTLPELKVLMLQFNRFH---GEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573
             +     L+ L L  N        I          +LR + +       +LP       
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIAS------LNRLRELSIRACPELTELPEPLASTD 174

Query: 574 NAIKVANKSQLKYMQDQPGQSLNY----ILPSSSAYIFD-YSLQYIYAY--SITMVNKGI 626
            + +      L+ +       L +     LP+S   I +  +L+ +      ++ +   I
Sbjct: 175 ASGEHQGLVNLQSL------RLEWTGIRSLPAS---IANLQNLKSLKIRNSPLSALGPAI 225

Query: 627 EMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLE 686
                 +   L  + L     +   P        L  L L   + L  +P  +  LT LE
Sbjct: 226 ----HHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 687 SLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ 725
            LDL        +P  +A+L +  +  V  +        
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 3e-25
 Identities = 59/367 (16%), Positives = 105/367 (28%), Gaps = 74/367 (20%)

Query: 178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ 237
           +    L       +  +   L    +    + +         N     N   I +     
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRA 67

Query: 238 LRGYLPSQIGSLTQ--LTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL 295
           L+      +   TQ    AL+L         P     L  L+++ + +  L         
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME------- 118

Query: 296 LP----KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQL 351
           LP    +   L  L L+ N L  +  +                  +L           +L
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASI----------------ASLN----------RL 152

Query: 352 ELLDLSANKIPGKIPGWLLNVTTG-------NLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
             L + A     ++P  L +           NLQ + L +  I      S+  L  +L +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANL-QNLKS 210

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVS--------NNLLTGKLAPWLCNLNSLRVLDLSHNF 456
           L +R++ L     + P   IH+L             L     P       L+ L L    
Sbjct: 211 LKIRNSPLSA---LGPA--IHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCS 264

Query: 457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516
               LP  +         T L+ +DL   +   R+P  +A       + +  +  A +  
Sbjct: 265 NLLTLPLDIHR------LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

Query: 517 SWLGTLP 523
                 P
Sbjct: 319 HRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 8e-24
 Identities = 55/396 (13%), Positives = 103/396 (26%), Gaps = 93/396 (23%)

Query: 108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH 167
              H    E L    +             L  +      L    +    + ++       
Sbjct: 7   HHHHSSGRENLYFQGST-----------ALRPYHD---VLSQWQRHYNADRNRW------ 46

Query: 168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ--LTYINFDLNQLTGPIPNWLANL 225
               +W    +    +       +      L + TQ     +      L    P+    L
Sbjct: 47  --HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRL 103

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
           + L  +++ +  L   LP  +     L  L L+ N  +  +P+SI+ L RL  L + +  
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACP 161

Query: 286 LS-------GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
                     +         L +L  L L    +  +  +  N++       L + +  L
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ---NLKSLKIRNSPL 218

Query: 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL 398
                 ++   +LE LDL         P        G                       
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIF-----GGR--------------------- 252

Query: 399 WTDLVTLDLRS-NKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFL 457
              L  L L+  + L     +P +                   +  L  L  LDL     
Sbjct: 253 -APLKRLILKDCSNLLT---LPLD-------------------IHRLTQLEKLDLRGCVN 289

Query: 458 SGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR 493
              LP  ++            +I +  +L       
Sbjct: 290 LSRLPSLIA------QLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 3e-23
 Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 56/245 (22%)

Query: 107 SSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS- 165
              F L HL+ +++        ++P  +                  L+ L L++N   + 
Sbjct: 98  DQAFRLSHLQHMTIDAAGL--MELPDTM-------------QQFAGLETLTLARNPLRAL 142

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPS---------WLMNLTQLTYINFDLNQLTG 216
           P S     IA    L  L++     + E P              L  L  +  +   +  
Sbjct: 143 PAS-----IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS-CNQFQGPVPSSISELKR 275
            +P  +ANL  L  L ++++ L   L   I  L +L  LDL  C   +   P        
Sbjct: 198 -LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAP 254

Query: 276 LEYLDLHSNN-------------------LSGNVYIEEL---LPKLKSLIVLFLSANNLS 313
           L+ L L   +                   L G V +  L   + +L +  ++ +  +  +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 314 LITRN 318
            + ++
Sbjct: 315 QLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.7 bits (244), Expect = 3e-22
 Identities = 45/305 (14%), Positives = 93/305 (30%), Gaps = 43/305 (14%)

Query: 443 NLNSLRVLDLSHNF--------------LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
           + +    L    +                         ++    N+ N ++   +   L+
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK 69

Query: 489 GRIPRSLANCTM--LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH---GEIGEPD 543
                 L + T      L+L +  +    P     L  L+ + +           + +  
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQ-- 125

Query: 544 TGFVFPKLRIIDLSHNRFSGKLPSKYFQCWN--AIKVANKSQLKYMQDQPGQSLNYILPS 601
               F  L  + L+ N     LP+          + +    +L  + +           +
Sbjct: 126 ----FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-----TDA 175

Query: 602 SSAYIFDYSLQYIYAY--SITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELK 659
           S  +    +LQ +      I  +   I      + N L  + + N+ L   +  +I  L 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPASI----ANLQN-LKSLKIRNSPLS-ALGPAIHHLP 229

Query: 660 GLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719
            L  L+L G   L + P   G    L+ L L + +    +P  +  LT L   D+     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 720 TGQIP 724
             ++P
Sbjct: 290 LSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 19/162 (11%)

Query: 101 GSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-----FSG----QVP-SLGNL 150
            S ++S     L +L+ L L         +P+ I NL +             +  ++ +L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 151 TKLKCLELSQNNFSS--PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
            KL+ L+L         P          +  L  L L + + +   P  +  LTQL  ++
Sbjct: 229 PKLEELDLRGCTALRNYPPI-----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 209 FDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250
                    +P+ +A L    I+ +  +        +  +  
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 14/73 (19%), Positives = 27/73 (36%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  +IL +   +  +P  I  L  L  L+L G   L  +PS +  L     + +  +  +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 697 GEIPRQLAELTSL 709
                +     + 
Sbjct: 315 QLDQHRPVARPAE 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (276), Expect = 3e-25
 Identities = 69/342 (20%), Positives = 118/342 (34%), Gaps = 53/342 (15%)

Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
                 +N   + LT  +P+ L     +T L +  N L   LP+      +L  L++S N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
           Q    +P     L  L        +L        L   L  L   ++  N L+ +     
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLP------ALPSGLCKL---WIFGNQLTSLPVLPP 141

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
            ++       L ++   L           +L  L    N++   +P          LQ +
Sbjct: 142 GLQ------ELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPMLP-----SGLQEL 186

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440
           ++S N +      S+  L ++L  L   +N+L   LP  P      +VS N LT  L   
Sbjct: 187 SVSDNQLA-----SLPTLPSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LPVL 239

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
              L   + L +S N L+  LP            + L  + +  N L  R+P SL + + 
Sbjct: 240 PSEL---KELMVSGNRLTS-LPMLP---------SGLLSLSVYRNQLT-RLPESLIHLSS 285

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEP 542
              ++L  N +++     L  +           RF       
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 6e-25
 Identities = 71/386 (18%), Positives = 120/386 (31%), Gaps = 79/386 (20%)

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
              N   +L++  + L   LP  +     +T L +  N     +P+   EL+    L++ 
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELR---TLEVS 89

Query: 283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFL 342
            N L+    +  L P L  L +      +L  +        L      L +    L    
Sbjct: 90  GNQLT---SLPVLPPGLLELSIFSNPLTHLPALPSG-----LCK----LWIFGNQLTSLP 137

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDL 402
                   L+ L +S N++   +P          L  +    N +T     S+ +L + L
Sbjct: 138 VLPP---GLQELSVSDNQL-ASLPALP-----SELCKLWAYNNQLT-----SLPMLPSGL 183

Query: 403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
             L +  N+L   LP  P         NN LT  L      L   + L +S N L+  LP
Sbjct: 184 QELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTS-LP 237

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                       + LK + +S N L   +P   +    L  L +  NQ+  + P  L  L
Sbjct: 238 VLP---------SELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTRL-PESLIHL 283

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS 582
                +                          +L  N  S +      +  +A   +   
Sbjct: 284 SSETTV--------------------------NLEGNPLSERTLQALREITSAPGYSGPI 317

Query: 583 QLKYMQDQPGQSLNYILPSSSAYIFD 608
               M           L  ++A    
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 4e-21
 Identities = 60/374 (16%), Positives = 120/374 (32%), Gaps = 97/374 (25%)

Query: 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLR 408
           +   +L++  + +   +P  L      ++  + +  N +T         L  +L TL++ 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTSLPA-----LPPELRTLEVS 89

Query: 409 SNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468
            N+L     +P                        L  L +       L  +        
Sbjct: 90  GNQLTS---LPVL-------------------PPGLLELSIFSNPLTHLPALP------- 120

Query: 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVL 528
                 + L  + +  N L   +P        L+ L + +NQ+A + P+    L +L   
Sbjct: 121 ------SGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLASL-PALPSELCKLWAY 169

Query: 529 MLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQ 588
             Q                   L+ + +S N+ +  LP+           +   +L    
Sbjct: 170 NNQLTSLPMLPS---------GLQELSVSDNQLA-SLPTL---------PSELYKLWAYN 210

Query: 589 DQPGQSLNYILPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNK 646
           ++    L  +    S       L+ +      +T +              L  +++S N+
Sbjct: 211 NR----LTSLPALPS------GLKELIVSGNRLTSLPVLPSE--------LKELMVSGNR 252

Query: 647 LIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL 706
           L   +P   S L  L+       N L  +P SL +L+   +++L  N LS    + L E+
Sbjct: 253 LT-SLPMLPSGLLSLSV----YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI 307

Query: 707 TSLAVFDVSDNNLT 720
           TS          + 
Sbjct: 308 TSA---PGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 4e-20
 Identities = 79/430 (18%), Positives = 129/430 (30%), Gaps = 104/430 (24%)

Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS-PHSAS 170
                 L++ ++    + +P  +                  +  L +  NN +S P    
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCL---------------PAHITTLVIPDNNLTSLPALP- 80

Query: 171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI 230
                   EL  L ++  N +   P     L +L+  +  L  L             L  
Sbjct: 81  -------PELRTLEVSG-NQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCK 125

Query: 231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV 290
           L +  NQL   LP     L +   L +S NQ    +P+  SEL +   L  ++N L    
Sbjct: 126 LWIFGNQLT-SLPVLPPGLQE---LSVSDNQLAS-LPALPSELCK---LWAYNNQL---- 173

Query: 291 YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQ 350
               L      L  L +S N L+                 L      L +          
Sbjct: 174 --TSLPMLPSGLQELSVSDNQLA----------------SLPTLPSELYK---------- 205

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           L   +     +P              L+ + +S N +T         L ++L  L +  N
Sbjct: 206 LWAYNNRLTSLPALP---------SGLKELIVSGNRLTSLPV-----LPSELKELMVSGN 251

Query: 411 KLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS---------GVL 461
           +L   LP+ P   +   V  N LT +L   L +L+S   ++L  N LS            
Sbjct: 252 RLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN-----CTMLEFLDLGNNQIADIFP 516
               S   I  +         +  L        +            +   G    AD F 
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFS 369

Query: 517 SWLGTLPELK 526
            +L  L E +
Sbjct: 370 LFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 5e-20
 Identities = 59/316 (18%), Positives = 100/316 (31%), Gaps = 92/316 (29%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C  N   VL++  + L+  LP CL          ++  + +  N L   +P        L
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--------PAHITTLVIPDNNLT-SLPALPPE---L 83

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
             L++  NQ+  + P     L EL +                       L  + +  N+ 
Sbjct: 84  RTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALP---------SGLCKLWIFGNQL 133

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI--LPSSSAYIFDYSLQYIYAYS- 618
           +  LP                 L+ +      S N +  LP+  +      L  ++AY+ 
Sbjct: 134 T-SLP------------VLPPGLQELSV----SDNQLASLPALPS-----ELCKLWAYNN 171

Query: 619 -ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLS---------- 667
            +T +              L  + +S+N+L   +PT  SEL  L   N            
Sbjct: 172 QLTSLPMLPSG--------LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG 222

Query: 668 ------GNNLLGHIPSSLGNLTVL-----------------ESLDLSNNNLSGEIPRQLA 704
                   N L  +P     L  L                  SL +  N L+  +P  L 
Sbjct: 223 LKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLI 281

Query: 705 ELTSLAVFDVSDNNLT 720
            L+S    ++  N L+
Sbjct: 282 HLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
              + +  + L   +P  +     +  L +  NNL   +P+    L    +L++S N L+
Sbjct: 42  NAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT 94

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENS 735
             +P     L  L++F     +L        +   F N 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ 132

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 3e-24
 Identities = 68/311 (21%), Positives = 107/311 (34%), Gaps = 62/311 (19%)

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
           T +   S  L   +P+ I   +  T L+L  N+ Q        +L +L  L L SN LS 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 289 NVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ 348
                +      SL  L LS N +  ++ N           FLGL               
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----------FLGLEQ------------- 102

Query: 349 DQLELLDLSANKIPGKIP--GWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406
             LE LD   + +  ++      L++   NL ++++S+        G    L + L  L 
Sbjct: 103 --LEHLDFQHSNL-KQMSEFSVFLSLR--NLIYLDISHTHTRVAFNGIFNGL-SSLEVLK 156

Query: 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS 466
           +  N  Q                 ++ T         L +L  LDLS   L  +      
Sbjct: 157 MAGNSFQENFL------------PDIFTE--------LRNLTFLDLSQCQLEQL------ 190

Query: 467 NSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE-L 525
           +   F + ++L+++++SHN               L+ LD   N I       L   P  L
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 526 KVLMLQFNRFH 536
             L L  N F 
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 68/289 (23%), Positives = 111/289 (38%), Gaps = 61/289 (21%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ--FQGPVPSSISELKRLEYLDLHSNN 285
            T L L+SN+L+         LTQLT L LS N   F+G    S      L+YLDL  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 286 LSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFL 345
           +     +      L+ L  L    +NL          ++    VFL L +          
Sbjct: 90  VI---TMSSNFLGLEQLEHLDFQHSNLK---------QMSEFSVFLSLRN---------- 127

Query: 346 NDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN-LITGFDRGSVVLLWTDLVT 404
                L  LD+S         G    ++  +L+ + ++ N     F       L  +L  
Sbjct: 128 -----LIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTEL-RNLTF 179

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
           LDL   +L+    + P +                    +L+SL+VL++SHN    +    
Sbjct: 180 LDLSQCQLEQ---LSPTA------------------FNSLSSLQVLNMSHNNFFSL---- 214

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN-CTMLEFLDLGNNQIA 512
             ++  +K   +L+++D S N +     + L +  + L FL+L  N  A
Sbjct: 215 --DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 32/272 (11%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
            VP+ G  +    LEL  N   S     F  + + T+L  L+   ++  G         T
Sbjct: 21  SVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKL-SLSSNGLSFKGCCSQSDFGTT 78

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQ 261
            L Y++   N +   + +    L +L  L  + + L+      +  SL  L  LD+S   
Sbjct: 79  SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
            +       + L  LE L +  N+   N  + ++  +L++L  L LS   L  ++     
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTA-- 194

Query: 322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVN 381
                   F  L+S               L++L++S N            +   +LQ ++
Sbjct: 195 --------FNSLSS---------------LQVLNMSHNNFFSLDTFPYKCLN--SLQVLD 229

Query: 382 LSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413
            S N I    +  +    + L  L+L  N   
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 64/286 (22%), Positives = 105/286 (36%), Gaps = 57/286 (19%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQL--RGYLPSQIGSLTQLTALDLSC 259
           +  T +  + N+L          L +LT LSL SN L  +G         T L  LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNT 319
           N     + S+   L++LE+LD   +NL   +    +   L++LI L +S  +  +     
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG- 144

Query: 320 VNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379
                    +F GL+S               LE+L ++ N         +      NL F
Sbjct: 145 ---------IFNGLSS---------------LEVLKMAGNSFQENFLPDIFTELR-NLTF 179

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAP 439
           ++LS   +      +   L + L  L++  N       +                     
Sbjct: 180 LDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFS---LDTFP----------------- 218

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485
               LNSL+VLD S N +     Q L +       ++L  ++L+ N
Sbjct: 219 -YKCLNSLQVLDYSLNHIMTSKKQELQHF-----PSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 59/257 (22%), Positives = 97/257 (37%), Gaps = 31/257 (12%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                  L  L  LSL+ N  ++    S             S    T LK L+LS N   
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCS------------QSDFGTTSLKYLDLSFNGVI 91

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFP--SWLMNLTQLTYINFDLNQLTGPIPNWL 222
           +  S++F       +L  L   + + + +    S  ++L  L Y++              
Sbjct: 92  T-MSSNFL---GLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 223 ANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
             L+ L +L +  N  +      I   L  LT LDLS  Q +   P++ + L  L+ L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 282 HSNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA------ 334
             NN      ++      L SL VL  S N++    +  +     +   FL L       
Sbjct: 207 SHNNFF---SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFAC 262

Query: 335 SCNLKEFLDFLNDQDQL 351
           +C  + FL ++ DQ QL
Sbjct: 263 TCEHQSFLQWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 47/236 (19%), Positives = 82/236 (34%), Gaps = 19/236 (8%)

Query: 91  KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS-----FSG--- 142
           KL+L+S+ +      S S F    L++L L+ N      + S  + L       F     
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNL 113

Query: 143 -QVPSLG---NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS-W 197
            Q+       +L  L  L++S  +     +  F      + L  L +A  +    F    
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDI 170

Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
              L  LT+++    QL    P    +L+ L +L++  N            L  L  LD 
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 258 SCNQFQGPVPSSISEL-KRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
           S N         +      L +L+L  N+ +     +  L  +K    L +    +
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 286

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 64/321 (19%), Positives = 102/321 (31%), Gaps = 76/321 (23%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
            +   S  L   P  IP  +T   L  +N L          L  L  L LS N LS    
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                S+     T+LK +DLS N +   +  +      LE LD  ++ +  +        
Sbjct: 70  ----CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVF 122

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS 582
             L                         L  +D+SH        +  F           S
Sbjct: 123 LSL-----------------------RNLIYLDISHTHTR-VAFNGIFN--------GLS 150

Query: 583 QLK--YMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGI 640
            L+   M        N    +    IF                        ++ N LT +
Sbjct: 151 SLEVLKMAG------NSFQENFLPDIFT-----------------------ELRN-LTFL 180

Query: 641 ILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI 699
            LS  + + ++  +  + L  L  LN+S NN           L  L+ LD S N++    
Sbjct: 181 DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 700 PRQLAEL-TSLAVFDVSDNNL 719
            ++L    +SLA  +++ N+ 
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 61/288 (21%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           S   +  +   L+ V P  +         ++   ++L  N LQ          T L  L 
Sbjct: 8   SGTEIRCNSKGLTSV-PTGIP--------SSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 506 LGNNQIA--DIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNRFS 562
           L +N ++              LK L L FN     +    + F+   +L  +D  H+   
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY-ILPSSSAYIFD--YSLQYIYAYSI 619
                  F         +   L Y+       +++     +   IF+   SL+ +     
Sbjct: 115 QMSEFSVFL--------SLRNLIYL------DISHTHTRVAFNGIFNGLSSLEVLK---- 156

Query: 620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPSS 678
                                 ++ N         I +EL+ L  L+LS   L    P++
Sbjct: 157 ----------------------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
             +L+ L+ L++S+NN           L SL V D S N++     + 
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNL-LGHIPS-SLGNLTVLESLDLSNNN 694
            T + L +NKL         +L  L  L+LS N L      S S    T L+ LDLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 695 LSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF 729
           +   +      L  L   D   +NL  Q+ +   F
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 5e-23
 Identities = 59/313 (18%), Positives = 98/313 (31%), Gaps = 65/313 (20%)

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
           N+ + +      L   +P  I   +    L+L  N  Q     +   L  LE L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 286 LSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF 344
           +     IE      L SL  L L  N L++I              F  L+          
Sbjct: 111 IR---QIEVGAFNGLASLNTLELFDNWLTVIPSGA----------FEYLSK--------- 148

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLS-YNLITGFDRGSVVLLWTDLV 403
                 L  L L  N I          V   +L  ++L     +     G+   L  +L 
Sbjct: 149 ------LRELWLRNNPIESIPSYAFNRVP--SLMRLDLGELKKLEYISEGAFEGL-FNLK 199

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
            L+L    +           +              P L  L  L  L++S N    + P 
Sbjct: 200 YLNLGMCNI---------KDM--------------PNLTPLVGLEELEMSGNHFPEIRPG 236

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                  F   ++LK + + ++ +      +      L  L+L +N ++ +       L 
Sbjct: 237 S------FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 524 ELKVLMLQFNRFH 536
            L  L L  N ++
Sbjct: 291 YLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 62/311 (19%), Positives = 99/311 (31%), Gaps = 67/311 (21%)

Query: 251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLSA 309
           Q + +  +       VP  I       YL+L  NN+     I+      L  L VL L  
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQ---MIQADTFRHLHHLEVLQLGR 108

Query: 310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWL 369
           N++  I              F GLAS               L  L+L  N +     G  
Sbjct: 109 NSIRQIEVGA----------FNGLAS---------------LNTLELFDNWLTVIPSGAF 143

Query: 370 LNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDL-RSNKLQGPLPIPPESTIHYLV 428
             ++   L+ + L  N I      +   +   L+ LDL    KL+    I   +      
Sbjct: 144 EYLS--KLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEY---ISEGA------ 191

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
                          L +L+ L+L    +  +                L+ +++S N   
Sbjct: 192 ------------FEGLFNLKYLNLGMCNIKDM--------PNLTPLVGLEELEMSGNHFP 231

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
              P S    + L+ L + N+Q++ I  +    L  L  L L  N     +   D     
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL-PHDLFTPL 289

Query: 549 PKLRIIDLSHN 559
             L  + L HN
Sbjct: 290 RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 26/218 (11%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
            + +  HL HLE L L  N+    +I        +F+G       L  L  LEL  N  +
Sbjct: 91  QADTFRHLHHLEVLQLGRNSI--RQIEVG-----AFNG-------LASLNTLELFDNWLT 136

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYIN-FDLNQLTGPIPNWL 222
              S +F      ++L  L L N N I   PS     +  L  ++  +L +L        
Sbjct: 137 VIPSGAFE---YLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
             L  L  L+L    ++  +P+ +  L  L  L++S N F    P S   L  L+ L + 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 283 SNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNT 319
           ++ +S    IE      L SL+ L L+ NNLS +  + 
Sbjct: 251 NSQVS---LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 54/235 (22%), Positives = 87/235 (37%), Gaps = 22/235 (9%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
               L+L  N I         ++   +L+ + L  N I   + G+   L   L TL+L  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGAFNGL-ASLNTLELFD 132

Query: 410 NKLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
           N L     IP       S +  L + NN +    +     + SL  LDL        +  
Sbjct: 133 NWLTV---IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS- 188

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                  F+   NLK ++L    ++  +P +L     LE L++  N   +I P     L 
Sbjct: 189 ----EGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKV 578
            LK L +  ++    I E +       L  ++L+HN  S  LP   F     +  
Sbjct: 243 SLKKLWVMNSQVS-LI-ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVE 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 52/210 (24%), Positives = 77/210 (36%), Gaps = 24/210 (11%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
              +   L  L  L L DN    + IPS      +F         L+KL+ L L  N   
Sbjct: 115 EVGAFNGLASLNTLELFDNWL--TVIPSG-----AFEY-------LSKLRELWLRNNPIE 160

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTGPIPNWLA 223
           S  S +F+   +   L  L L  +  +          L  L Y+N  +  +   +PN L 
Sbjct: 161 SIPSYAFN---RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LT 215

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            L  L  L +  N      P     L+ L  L +  +Q      ++   L  L  L+L  
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 284 NNLSGNVYI-EELLPKLKSLIVLFLSANNL 312
           NNLS    +  +L   L+ L+ L L  N  
Sbjct: 276 NNLS---SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 74/299 (24%)

Query: 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFS 172
            +  +L+L +NN     I ++            +  +L  L+ L+L +N+       +F+
Sbjct: 75  SNTRYLNLMENNI--QMIQAD------------TFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 173 WIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS 232
                                       L  L  +    N LT         L++L  L 
Sbjct: 121 ---------------------------GLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153

Query: 233 LKSNQLRGYLPSQIGSLTQLTALDLS-CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY 291
           L++N +          +  L  LDL    + +     +   L  L+YL+L   N+     
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---D 210

Query: 292 IEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQL 351
           +  L P L  L  L +S N+   I   +          F GL+S               L
Sbjct: 211 MPNLTP-LVGLEELEMSGNHFPEIRPGS----------FHGLSS---------------L 244

Query: 352 ELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           + L +  +++          +   +L  +NL++N ++         L   LV L L  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLA--SLVELNLAHNNLSSLPHDLFTPL-RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 53/279 (18%), Positives = 85/279 (30%), Gaps = 54/279 (19%)

Query: 178 TELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
           +   +L L   N I    +    +L  L  +    N +          L  L  L L  N
Sbjct: 75  SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
            L          L++L  L L  N  +     + + +  L  LDL        +  E   
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAF 192

Query: 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDL 356
             L +L  L L   N+  +                 L                 LE L++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPN------------LTPLVG---------------LEELEM 225

Query: 357 SANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPL 416
           S N  P   PG    ++  +L+ + +  + ++  +R +   L   LV L+L  N L    
Sbjct: 226 SGNHFPEIRPGSFHGLS--SLKKLWVMNSQVSLIERNAFDGL-ASLVELNLAHNNLSS-- 280

Query: 417 PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
            +P +                      L  L  L L HN
Sbjct: 281 -LPHDL------------------FTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 49/275 (17%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           + R L+L  N +  +          F++  +L+++ L  N ++     +      L  L+
Sbjct: 76  NTRYLNLMENNIQMIQA------DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF-PKLRIIDLSHNRFSGK 564
           L +N +  I       L +L+ L L+ N     I  P   F   P L  +DL   +    
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SI--PSYAFNRVPSLMRLDLGELKKLEY 186

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNK 624
           +    F+            LKY+                  +   +++ +   +      
Sbjct: 187 ISEGAFE--------GLFNLKYL-----------------NLGMCNIKDMPNLT------ 215

Query: 625 GIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV 684
                   +   L  + +S N      P S   L  L  L +  + +     ++   L  
Sbjct: 216 -------PLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 685 LESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719
           L  L+L++NNLS         L  L    +  N  
Sbjct: 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 70/314 (22%), Positives = 104/314 (33%), Gaps = 63/314 (20%)

Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
           N    +  +   LS V PQ      I  N   L   +L  N +Q     +  +   LE L
Sbjct: 54  NQFSKVVCTRRGLSEV-PQ-----GIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVL 104

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
            LG N I  I       L  L  L L  N     I          KLR + L +N     
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI-PSGAFEYLSKLRELWLRNNPIE-S 161

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD--YSLQYIYAYSITMV 622
           +PS  F             L  +     + L YI    S   F+  ++L+Y+        
Sbjct: 162 IPSYAFN--------RVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLN------- 202

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682
                              L    +   +P  ++ L GL  L +SGN+     P S   L
Sbjct: 203 -------------------LGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 683 TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG--KQFNTFENSSFEGN 740
           + L+ L + N+ +S         L SL   +++ NNL+  +P                 N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 741 PGLCGKPLSRNCEI 754
           P  C      +C+I
Sbjct: 301 PWNC------DCDI 308

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 21/136 (15%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
           S  +   L +L++L+L   N                   +P+L  L  L+ LE+S N+F 
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD----------------MPNLTPLVGLEELEMSGNHFP 231

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTGPIPNWLA 223
                SF      + L  L + N + +          L  L  +N   N L+    +   
Sbjct: 232 EIRPGSFH---GLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 224 NLNRLTILSLKSNQLR 239
            L  L  L L  N   
Sbjct: 288 PLRYLVELHLHHNPWN 303

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (252), Expect = 1e-22
 Identities = 84/444 (18%), Positives = 151/444 (34%), Gaps = 93/444 (20%)

Query: 93  NLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK 152
           +  ++        + S   L  L  L   +++                   +  +  LT 
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT----------------DMTGIEKLTG 65

Query: 153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN 212
           L  L  + NN ++        +++ T L++LA  + N +      +  LT+LTY+N D N
Sbjct: 66  LTKLICTSNNITTLD------LSQNTNLTYLACDS-NKLTNLD--VTPLTKLTYLNCDTN 116

Query: 213 QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272
           +LT  +   ++    LT L+   N L       +   TQLT LD   N+    +   ++ 
Sbjct: 117 KLT-KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTP 168

Query: 273 LKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLG 332
             +L  LD   N ++     E  + + K L  L    NN++ +                 
Sbjct: 169 QTQLTTLDCSFNKIT-----ELDVSQNKLLNRLNCDTNNITKLD---------------- 207

Query: 333 LASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDR 392
                       LN   QL  LD S+NK+  +I    L      L + + S N +T  D 
Sbjct: 208 ------------LNQNIQLTFLDCSSNKLT-EIDVTPLT----QLTYFDCSVNPLTELDV 250

Query: 393 GSVVLLWTDLVTLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLD 451
            ++    + L TL      L    L    +           +       + +   L +LD
Sbjct: 251 STL----SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLD 303

Query: 452 LSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQI 511
                ++                  L  + L++  L   +   +++ T L+ L   N  I
Sbjct: 304 CQAAGIT---------ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 512 ADIFPSWLGTLPELKVLMLQFNRF 535
            D   S +G +P L        + 
Sbjct: 352 QDF--SSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 80/375 (21%), Positives = 127/375 (33%), Gaps = 53/375 (14%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSC 259
           N        F++             L  LT L   ++ +     + I  LT LT L  + 
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTS 73

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNT 319
           N         +S+   L YL   SN L+        +  L  L  L    N L+      
Sbjct: 74  NNITTL---DLSQNTNLTYLACDSNKLT-----NLDVTPLTKLTYLNCDTNKLT-----K 120

Query: 320 VNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379
           +++       +L  A   L E +D  +   QL  LD   NK   K+           L  
Sbjct: 121 LDVSQNPLLTYLNCARNTLTE-IDVSH-NTQLTELDCHLNKKITKLDVTPQT----QLTT 174

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLA 438
           ++ S+N IT  D    V     L  L+  +N +   L +     + +L  S+N LT    
Sbjct: 175 LDCSFNKITELD----VSQNKLLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTEID- 228

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSN-SKIFKNATNLKMIDLSHNL---------LQ 488
             +  L  L   D S N L+ +    LS  + +    T+L  IDL+HN           +
Sbjct: 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHG-EIGEPDTGFV 547
                 + + T L  LD     I ++    L   P+L  L L        ++        
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSH------ 337

Query: 548 FPKLRIIDLSHNRFS 562
             KL+ +   +    
Sbjct: 338 NTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 8e-20
 Identities = 83/420 (19%), Positives = 139/420 (33%), Gaps = 59/420 (14%)

Query: 180 LSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLR 239
            +    A   +          L  LT ++   + +T  +   +  L  LT L   SN + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTG-IEKLTGLTKLICTSNNIT 77

Query: 240 GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKL 299
             L   +   T LT L    N+        ++ L +L YL+  +N L+        + + 
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD-----VSQN 126

Query: 300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSAN 359
             L  L  + N L+      +++    +   L          LD    Q QL  LD S N
Sbjct: 127 PLLTYLNCARNTLT-----EIDVSHNTQLTELDCHLNKKITKLDVTP-QTQLTTLDCSFN 180

Query: 360 KIPGKIPGWLLNVTT-GNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI 418
           KI        L+V+    L  +N   N IT  D          L  LD  SNKL   + +
Sbjct: 181 KITE------LDVSQNKLLNRLNCDTNNITKLDLNQ----NIQLTFLDCSSNKLTE-IDV 229

Query: 419 PPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV----LPQ-----CLSNS 468
            P + + Y   S N LT      +  L+ L  L      L  +      Q          
Sbjct: 230 TPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 469 KI----FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
           KI      + T L ++D     +   +   L+    L +L L N ++ ++    +    +
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELD---VSHNTK 340

Query: 525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQL 584
           LK L          I +  +    P L     +  +    +P +     +     +   L
Sbjct: 341 LKSLSCVNAH----IQDFSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 89/495 (17%), Positives = 164/495 (33%), Gaps = 97/495 (19%)

Query: 252 LTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN 311
             +   +  + Q     S  +L  L  LD H+++++    +   + KL  L  L  ++NN
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD---MTG-IEKLTGLTKLICTSNN 75

Query: 312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLN 371
           ++     T+++       +L   S  L   LD      +L  L+   NK+  K+      
Sbjct: 76  IT-----TLDLSQNTNLTYLACDSNKLTN-LDVTP-LTKLTYLNCDTNKL-TKLDVSQNP 127

Query: 372 VTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSN 430
                L ++N + N +T  D    V   T L  LD   NK    L + P++ +  L  S 
Sbjct: 128 ----LLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF 179

Query: 431 NLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR 490
           N +T +L   +     L  L+   N ++ +                L  +D S N L   
Sbjct: 180 NKIT-ELD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLT-E 226

Query: 491 IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
           I   +   T L + D   N + ++    + TL +L  L                      
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQT----------------D 265

Query: 551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYS 610
           L  IDL+HN    +L     +    IK  + +                            
Sbjct: 266 LLEIDLTHNT---QLIYFQAEGCRKIKELDVTHNT------------------------Q 298

Query: 611 LQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN 670
           L  +   +        E++  +    L  + L+N +L  ++   +S    L  L+    +
Sbjct: 299 LYLLDCQA----AGITELDLSQNPK-LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH 350

Query: 671 LLGHIPSSLGNLTVLESLDLSNNNLSGEIP-----RQLAELTSLAVFDVSDNNLTGQIPQ 725
           +     SS+G +  L +   +                L    S  + D   N +  +   
Sbjct: 351 IQD--FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 726 GKQFNTFENSSFEGN 740
           G  ++   N+    N
Sbjct: 409 GGVYDQATNTITWEN 423

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.9 bits (148), Expect = 8e-10
 Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 48/340 (14%)

Query: 97  SCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCL 156
            C      +   +     L  L  + N             ++        +     L  L
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNK------------ITELD-----VSQNKLLNRL 196

Query: 157 ELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG 216
               NN +         + +  +L++L  ++ N + E    +  LTQLTY +  +N LT 
Sbjct: 197 NCDTNNITKLD------LNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSVNPLTE 247

Query: 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL 276
              + L+    LT L      L   +   +   TQL          +      ++   +L
Sbjct: 248 LDVSTLSK---LTTLHCIQTDLL-EID--LTHNTQLI--YFQAEGCRKIKELDVTHNTQL 299

Query: 277 EYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASC 336
             LD  +  ++    ++  L +   L+ L+L+   L+      +++    K   L   + 
Sbjct: 300 YLLDCQAAGIT---ELD--LSQNPKLVYLYLNNTELT-----ELDVSHNTKLKSLSCVNA 349

Query: 337 NLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVV 396
           ++++    +     L     +  +        L N +       +L        +     
Sbjct: 350 HIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 397 LLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGK 436
               D  T  +    L       P  T  +   N  + G 
Sbjct: 409 GGVYDQATNTITWENLST---DNPAVTYTFTSENGAIVGT 445

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 2e-22
 Identities = 81/507 (15%), Positives = 153/507 (30%), Gaps = 68/507 (13%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
              LSL  N +       I  L++L  L LS N+ +          + LEYLD+  N L 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 288 GNVYIEELLP--KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFL 345
                   +    + SL  L LS N+  ++              F  L            
Sbjct: 114 N-------ISCCPMASLRHLDLSFNDFDVLPVCK---------EFGNLTK---------- 147

Query: 346 NDQDQLELLDLSANKI----PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD 401
                L  L LSA K        +    L+    +L   ++           +  +L   
Sbjct: 148 -----LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
                L S ++   +       +  +  N+    +L  +L  L     L           
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCT-----MLEFLDLGNNQIADIFP 516
            +C      F     ++ +++ +  +  RI R     +      L    + N        
Sbjct: 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 517 SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576
           +      E+ + ML  +                    ++ + N F+     +       +
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPS--SFTFLNFTQNVFT-DSVFQGCSTLKRL 379

Query: 577 KVANKS--QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAY--SITMVNKGIEMNYGK 632
           +        LK        + N              +  +     S+  +N         
Sbjct: 380 QTLILQRNGLKNFFKVALMTKN--------------MSSLETLDVSLNSLNSHAYDRTCA 425

Query: 633 VSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSN 692
            +  +  + LS+N L G +   +     +  L+L  N ++  IP  + +L  L+ L++++
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482

Query: 693 NNLSGEIPR-QLAELTSLAVFDVSDNN 718
           N L   +P      LTSL    + DN 
Sbjct: 483 NQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 76/453 (16%), Positives = 151/453 (33%), Gaps = 81/453 (17%)

Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
            L++L+ L LS N   S     F       +L +L +++ N +         +  L +++
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL---FNQDLEYLDVSH-NRLQNISC--CPMASLRHLD 127

Query: 209 FDLNQLTG-PIPNWLANLNRLTILSLKSNQLR--------------------------GY 241
              N     P+     NL +LT L L + + R                          G 
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 242 LPSQIGSLTQLTALDLSCNQ-FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLK 300
             S     T +  L    N  F   V  S++ L  L+  ++  N+ +    +  L    +
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 301 SLIVLFLSANNLSLITRNTVNI--RLQNKFV-FLGLASCNLKEFLDFLNDQ------DQL 351
              +L ++  ++    + +V +      + V +L + +  + E +D             L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 352 ELLDLSANKIPGKIPG---WLLNVTT-------------------GNLQFVNLSYNLITG 389
            +  +                  +                      +  F+N + N+ T 
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 390 FDRGSVVLLWTDLVTLDLRSNKLQ------GPLPIPPESTIHYLVSNNLLTGKLAPWLCN 443
                       L TL L+ N L+                   +  N+L +         
Sbjct: 368 SVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF 503
             S+ VL+LS N L+G + +CL           +K++DL +N +   IP+ + +   L+ 
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLP--------PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
           L++ +NQ+  +       L  L+ + L  N + 
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 81/460 (17%), Positives = 156/460 (33%), Gaps = 60/460 (13%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWL-MNL 201
            VP      + K L LSQN+ S       S++   +EL  L L++ N I      + +  
Sbjct: 45  HVPK-DLPPRTKALSLSQNSISELRMPDISFL---SELRVLRLSH-NRIRSLDFHVFLFN 99

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY-LPSQIGSLTQLTALDLSCN 260
             L Y++   N+L   I      +  L  L L  N      +  + G+LT+LT L LS  
Sbjct: 100 QDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL-------------IVLFL 307
           +F+      ++ L  L  + L   +        E L    +              + + +
Sbjct: 157 KFRQLDLLPVAHLH-LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEF----------------------LDFL 345
           S N L  +  + + +  +N    +   S   +                          + 
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 346 NDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL 405
              + L + +L+  +   +           +L   ++   +          +   ++   
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIK 334

Query: 406 DLRSNKLQGPLPIPPE--STIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
            L  +       + P   S+  +L  + N+ T  +      L  L+ L L  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC-TMLEFLDLGNNQIADIFPSWLGT 521
                + + KN ++L+ +D+S N L              +  L+L +N +       L  
Sbjct: 395 V----ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448

Query: 522 LPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
            P++KVL L  NR    I  P        L+ ++++ N+ 
Sbjct: 449 PPKVKVLDLHNNRIM-SI--PKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 5e-17
 Identities = 60/371 (16%), Positives = 117/371 (31%), Gaps = 41/371 (11%)

Query: 354 LDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413
           L LS N I       +  ++   L+ + LS+N I   D    +    DL  LD+  N+LQ
Sbjct: 57  LSLSQNSISELRMPDISFLS--ELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRLQ 113

Query: 414 GPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKN 473
               I                         + SLR LDLS N         L   K F N
Sbjct: 114 N---ISCC---------------------PMASLRHLDLSFNDF-----DVLPVCKEFGN 144

Query: 474 ATNLKMIDLSHNLLQGRIPRSLAN-CTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF 532
            T L  + LS    +      +A+       LDL +  I       L       + ++  
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 533 NRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPG 592
                 +    +      L++ ++  N  + +    +        +     L  +  Q  
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-----LTRGPTLLNVTLQHI 259

Query: 593 QSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII---LSNNKLIG 649
           ++          + +   ++Y+  Y++T+  +     +      L  ++   + N   + 
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 650 KIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSL 709
                 S    +N   LS ++          + +    L+ + N  +  + +  + L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 710 AVFDVSDNNLT 720
               +  N L 
Sbjct: 380 QTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 4e-15
 Identities = 59/349 (16%), Positives = 104/349 (29%), Gaps = 63/349 (18%)

Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASF 171
           +  L  L L++   N         N       +  L     L  + L     +   S   
Sbjct: 217 VNALGHLQLSNIKLND-------ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 172 SWIAKQTELSWLALANINLIG-----EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226
                   + +L + N+ +       EF      L  L   +              +   
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
            + I  L  +           S +  T L+ + N F   V    S LKRL+ L L  N L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 287 SGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLN 346
                +  +   + SL  L +S N+L+                           +     
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSH------------------------AYDRTCA 425

Query: 347 DQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406
             + + +L+LS+N + G +   L       ++ ++L  N I    +    L    L  L+
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNNRIMSIPKDVTHL--QALQELN 479

Query: 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
           + SN+L+    +P                        L SL+ + L  N
Sbjct: 480 VASNQLKS---VPDGV------------------FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNY---SKIPSEIMNLSSFSGQVPSL- 147
            ++ +     S  +  S+F   +++ LS++D  F +      PS    L+          
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 148 ----GNLTKLKCLELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
                 L +L+ L L +N   +    A  +      E   ++L ++N    +        
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCAWAE 428

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            +  +N   N LTG +   L    ++ +L L +N++   +P  +  L  L  L+++ NQ 
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL 485

Query: 263 QGPVPSSISELKRLEYLDLHSNN 285
           +         L  L+Y+ LH N 
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 51/334 (15%), Positives = 107/334 (32%), Gaps = 41/334 (12%)

Query: 422 STIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMID 481
            + H++ +  L+ G + P   +     ++D S+  L+ V P+ L            K + 
Sbjct: 10  GSFHFVCALALIVGSMTP--FSNELESMVDYSNRNLTHV-PKDLP--------PRTKALS 58

Query: 482 LSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGE 541
           LS N +       ++  + L  L L +N+I  +         +L+ L +  NR       
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN---- 114

Query: 542 PDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW----------NAIK---VANKSQLKYMQ 588
             +      LR +DLS N F      K F                +   +   + L    
Sbjct: 115 -ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 589 DQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI 648
                   +I    +  +   +   ++       N    +      N L  + LSN KL 
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHP--NSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 649 GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV----------LESLDLSNNNLSGE 698
            +    +           +  N+      +    +V          +E L++ N  ++  
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 699 IPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTF 732
           I R+    +  A+  +   ++  Q+    +   +
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 68/313 (21%), Positives = 111/313 (35%), Gaps = 65/313 (20%)

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
           N+ + +      LR  +P  I   T    L+L  NQ Q    +S   L+ LE L L  N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 286 LSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF 344
           +     IE      L +L  L L  N L+ I              F+ L+          
Sbjct: 100 IR---TIEIGAFNGLANLNTLELFDNRLTTIPNGA----------FVYLSK--------- 137

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLS-YNLITGFDRGSVVLLWTDLV 403
                 L+ L L  N I   IP +  N    +L+ ++L     ++    G+   L ++L 
Sbjct: 138 ------LKELWLRNNPI-ESIPSYAFNRIP-SLRRLDLGELKRLSYISEGAFEGL-SNLR 188

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
            L+L    L           I  L                L  L  LDLS N LS + P 
Sbjct: 189 YLNLAMCNL---------REIPNLT--------------PLIKLDELDLSGNHLSAIRPG 225

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                  F+   +L+ + +  + +Q     +  N   L  ++L +N +  +       L 
Sbjct: 226 ------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

Query: 524 ELKVLMLQFNRFH 536
            L+ + L  N ++
Sbjct: 280 HLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
             +S  HLRHLE L L+ N+     I        +F+G       L  L  LEL  N  +
Sbjct: 80  KVNSFKHLRHLEILQLSRNHI--RTIEIG-----AFNG-------LANLNTLELFDNRLT 125

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYIN-FDLNQLTGPIPNWL 222
           +  + +F      ++L  L L N N I   PS     +  L  ++  +L +L+       
Sbjct: 126 TIPNGAFV---YLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
             L+ L  L+L    LR  +P+ +  L +L  LDLS N      P S   L  L+ L + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 283 SNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLG----LASCN 337
            + +     IE      L+SL+ + L+ NNL+L+  +        + + L       +C+
Sbjct: 240 QSQIQ---VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296

Query: 338 LKEFLDFLND 347
           +     ++ D
Sbjct: 297 ILWLSWWIKD 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 63/295 (21%), Positives = 95/295 (32%), Gaps = 64/295 (21%)

Query: 266 VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
           VP  IS       L+LH N +   +        L+ L +L LS N++  I          
Sbjct: 58  VPDGIST--NTRLLNLHENQIQ-IIK-VNSFKHLRHLEILQLSRNHIRTIEIGA------ 107

Query: 326 NKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN 385
               F GLA+               L  L+L  N++     G  + ++   L+ + L  N
Sbjct: 108 ----FNGLAN---------------LNTLELFDNRLTTIPNGAFVYLS--KLKELWLRNN 146

Query: 386 LITGFDRGSVVLLWTDLVTLDL-RSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNL 444
            I      +   +   L  LDL    +L     I   +                     L
Sbjct: 147 PIESIPSYAFNRI-PSLRRLDLGELKRLSY---ISEGA------------------FEGL 184

Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
           ++LR L+L+   L  +                L  +DLS N L    P S      L+ L
Sbjct: 185 SNLRYLNLAMCNLREIPN--------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
            +  +QI  I  +    L  L  + L  N     +   D       L  I L HN
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL-PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
              LL+L  N+I         ++   +L+ + LS N I   + G+   L  +L TL+L  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFD 121

Query: 410 NKLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
           N+L     IP       S +  L + NN +    +     + SLR LDL        +  
Sbjct: 122 NRLTT---IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS- 177

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                  F+  +NL+ ++L+   L+  IP +L     L+ LDL  N ++ I P     L 
Sbjct: 178 ----EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKV 578
            L+ L +  ++    I E +       L  I+L+HN  +  LP   F   + ++ 
Sbjct: 232 HLQKLWMIQSQIQ-VI-ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.7 bits (215), Expect = 5e-18
 Identities = 54/275 (19%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           + R+L+L  N +  +          FK+  +L+++ LS N ++     +      L  L+
Sbjct: 65  NTRLLNLHENQIQIIKVNS------FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF-PKLRIIDLSHNRFSGK 564
           L +N++  I       L +LK L L+ N     I  P   F   P LR +DL   +    
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI--PSYAFNRIPSLRRLDLGELKRLSY 175

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNK 624
           +    F+                           L          +L+Y+          
Sbjct: 176 ISEGAFEG--------------------------LS---------NLRYLNLAM----CN 196

Query: 625 GIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV 684
             E+        L  + LS N L    P S   L  L  L +  + +     ++  NL  
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 685 LESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNL 719
           L  ++L++NNL+         L  L    +  N  
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 56/279 (20%), Positives = 85/279 (30%), Gaps = 54/279 (19%)

Query: 178 TELSWLALANINLIGEFP-SWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
           T    L L   N I     +   +L  L  +    N +          L  L  L L  N
Sbjct: 64  TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
           +L          L++L  L L  N  +     + + +  L  LDL        +  E   
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAF 181

Query: 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDL 356
             L +L  L L+  NL  I                 L                 L+ LDL
Sbjct: 182 EGLSNLRYLNLAMCNLREIP------------NLTPLIK---------------LDELDL 214

Query: 357 SANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPL 416
           S N +    PG    +   +LQ + +  + I   +R +   L   LV ++L  N L    
Sbjct: 215 SGNHLSAIRPGSFQGLM--HLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTL-- 269

Query: 417 PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
            +P +                      L+ L  + L HN
Sbjct: 270 -LPHDL------------------FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 61/299 (20%), Positives = 97/299 (32%), Gaps = 74/299 (24%)

Query: 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFS 172
            +   L+L +N          I  +   S       +L  L+ L+LS+N+  +    +F+
Sbjct: 64  TNTRLLNLHENQ---------IQIIKVNS-----FKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 173 WIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS 232
                                       L  L  +    N+LT         L++L  L 
Sbjct: 110 ---------------------------GLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 233 LKSNQLRGYLPSQIGSLTQLTALDLS-CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY 291
           L++N +          +  L  LDL    +       +   L  L YL+L   NL     
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---E 199

Query: 292 IEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQL 351
           I  L P L  L  L LS N+LS I   +          F GL                 L
Sbjct: 200 IPNLTP-LIKLDELDLSGNHLSAIRPGS----------FQGLMH---------------L 233

Query: 352 ELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
           + L +  ++I         N+   +L  +NL++N +T         L   L  + L  N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQ--SLVEINLAHNNLTLLPHDLFTPL-HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 72/315 (22%), Positives = 109/315 (34%), Gaps = 65/315 (20%)

Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
           N    +      L  V P  +S        TN ++++L  N +Q     S  +   LE L
Sbjct: 43  NQFSKVICVRKNLREV-PDGIS--------TNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
            L  N I  I       L  L  L L  NR    I          KL+ + L +N     
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI-PNGAFVYLSKLKELWLRNNPIE-S 150

Query: 565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD--YSLQYIYAYSITMV 622
           +PS  F             L+ +     + L+YI    S   F+   +L+Y+        
Sbjct: 151 IPSYAFN--------RIPSLRRLDLGELKRLSYI----SEGAFEGLSNLRYLN------- 191

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGN 681
                              L+   L  +IP  ++ L  L+ L+LSGN+L   I   S   
Sbjct: 192 -------------------LAMCNLR-EIPN-LTPLIKLDELDLSGNHL-SAIRPGSFQG 229

Query: 682 LTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG--KQFNTFENSSFEG 739
           L  L+ L +  + +          L SL   +++ NNLT  +P       +  E      
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

Query: 740 NPGLCGKPLSRNCEI 754
           NP  C      NC+I
Sbjct: 289 NPWNC------NCDI 297

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693
           SN  + +I     L  ++P  IS       LNL  N +     +S  +L  LE L LS N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
           ++          L +L   ++ DN LT  IP G
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNG 130

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 58/311 (18%), Positives = 101/311 (32%), Gaps = 54/311 (17%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
             +  ++   N++T    + L     L  L L SN +   +      SL  L  LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-LSLITRNT 319
                  S    L  L +L+L  N     +    L   L  L +L +   +  + I R  
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK- 168

Query: 320 VNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF 379
                     F GL                 LE L++ A+ +    P  L ++   N+  
Sbjct: 169 ---------DFAGLTF---------------LEELEIDASDLQSYEPKSLKSIQ--NVSH 202

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAP 439
           + L            V +  + +  L+LR   L         S +    +N+L+      
Sbjct: 203 LILHMKQHILLLEIFVDVT-SSVECLELRDTDLDT----FHFSELSTGETNSLI------ 251

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS-LANC 498
                 + R + ++               K+    + L  ++ S N L+  +P       
Sbjct: 252 ---KKFTFRNVKITDE-------SLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRL 300

Query: 499 TMLEFLDLGNN 509
           T L+ + L  N
Sbjct: 301 TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 66/321 (20%), Positives = 112/321 (34%), Gaps = 45/321 (14%)

Query: 225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
            +R  I    S  L   +PS +     + +LDLS N+      S +     L+ L L SN
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 285 NLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
            ++    IEE     L SL  L LS N LS ++ +           F  L+S        
Sbjct: 87  GIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSS----------WFKPLSS-------- 125

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
                  L  L+L  N         L +  T        + +  T   R     L T L 
Sbjct: 126 -------LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLE 177

Query: 404 TLDLRSNKLQGPLPIPPES-----TIHYLV-SNNLLTGKLAPWLCNLNSLRVLDLSHNFL 457
            L++ ++ LQ      P+S      + +L+         L  ++   +S+  L+L    L
Sbjct: 178 ELEIDASDLQS---YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 458 SGVLPQCLSNSKI--FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF 515
                  LS  +          + + ++   L  ++ + L   + L  L+   NQ+  + 
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVP 293

Query: 516 PSWLGTLPELKVLMLQFNRFH 536
                 L  L+ + L  N + 
Sbjct: 294 DGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 52/280 (18%), Positives = 107/280 (38%), Gaps = 21/280 (7%)

Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLT 202
           +PS G    +K L+LS N  +   ++      +   L  L L + N I         +L 
Sbjct: 46  IPS-GLTEAVKSLDLSNNRITYISNSDLQ---RCVNLQALVLTS-NGINTIEEDSFSSLG 100

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQ 261
            L +++   N L+    +W   L+ LT L+L  N  +    + +   LT+L  L +    
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 262 FQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
               +     + L  LE L++ +++L    Y  + L  ++++  L L      L+    V
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 321 NIRLQNKFVFLG---LASCNLKEF----LDFLNDQDQLELLDLSANKIPGKIPGWLLNVT 373
           ++    + + L    L + +  E      + L  +     + ++   +  ++   L  ++
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 374 TGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413
              L  +  S N +     G +    T L  + L +N   
Sbjct: 278 --GLLELEFSRNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 31/284 (10%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD 505
           +++ LDLS+N ++ +           +   NL+ + L+ N +      S ++   LE LD
Sbjct: 53  AVKSLDLSNNRITYISNSD------LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL 565
           L  N ++++  SW   L  L  L L  N +   +GE        KL+I+ + +     K+
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 566 PSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKG 625
             K F        A  + L+ ++      L    P S   I + S   ++     ++ + 
Sbjct: 166 QRKDF--------AGLTFLEELEID-ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 626 IEMNYGKVSNFLTGIILSNNKLIGKIPTSISE--------LKGLNCLNLSGNNLLGHIPS 677
                  V++ +  + L +  L     + +S               + ++  +L   +  
Sbjct: 217 F----VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 678 SLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLT 720
            L  ++ L  L+ S N L   +P      LTSL    +  N   
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 53/266 (19%), Positives = 95/266 (35%), Gaps = 33/266 (12%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
           S+S L    +L+ L L  N             +++      S  +L  L+ L+LS N  S
Sbjct: 68  SNSDLQRCVNLQALVLTSNG------------INTIEEDSFS--SLGSLEHLDLSYNYLS 113

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFP--SWLMNLTQLTYINFDLNQLTGPIP-NW 221
           +  S+ F      + L++L L   N        S   +LT+L  +          I    
Sbjct: 114 NLSSSWF---KPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
            A L  L  L + ++ L+ Y P  + S+  ++ L L   Q    +   +     +E L+L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 282 HSNNLSGNVYIE------ELLPKLKSLIVLFLSANNLSLITRNTVNI-RLQNKFVFLGLA 334
              +L    + E        L K  +   + ++  +L  + +    I  L      L  +
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE----LEFS 285

Query: 335 SCNLKEF-LDFLNDQDQLELLDLSAN 359
              LK       +    L+ + L  N
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 48/320 (15%), Positives = 104/320 (32%), Gaps = 57/320 (17%)

Query: 427 LVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL 486
           ++ +            + +   +   S   L+ + P  L+          +K +DLS+N 
Sbjct: 13  VIISLSKEESSNQASLSCDRNGICKGSSGSLNSI-PSGLT--------EAVKSLDLSNNR 63

Query: 487 LQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR--------FHGE 538
           +       L  C  L+ L L +N I  I      +L  L+ L L +N         F   
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP- 122

Query: 539 IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI 598
                       L  ++L  N +     +  F            +L+ ++     +   I
Sbjct: 123 ---------LSSLTFLNLLGNPYKTLGETSLFSHLT--------KLQILRVGNMDTFTKI 165

Query: 599 LPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654
                   F     L+ +   +  +         +       ++ +IL   + I  +   
Sbjct: 166 ----QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN----VSHLILHMKQHILLLEIF 217

Query: 655 ISELKGLNCLNLSGNNL----LGHIPS----SLGNLTVLESLDLSNNNLSGEIPRQLAEL 706
           +     + CL L   +L       + +    SL       ++ +++ +L  ++ + L ++
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 707 TSLAVFDVSDNNLTGQIPQG 726
           + L   + S N L   +P G
Sbjct: 277 SGLLELEFSRNQLKS-VPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 29/195 (14%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
           ++  +S   HL  L+ L +  N   ++KI  +                LT L+ LE+  +
Sbjct: 138 TLGETSLFSHLTKLQILRV-GNMDTFTKIQRKD------------FAGLTFLEELEIDAS 184

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLNQLTGP--- 217
           +  S    S   I     +S L L             +   + +  +      L      
Sbjct: 185 DLQSYEPKSLKSI---QNVSHLILHM-KQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 218 -----IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-S 271
                  N L        + +    L   +   +  ++ L  L+ S NQ +  VP  I  
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFD 298

Query: 272 ELKRLEYLDLHSNNL 286
            L  L+ + LH+N  
Sbjct: 299 RLTSLQKIWLHTNPW 313

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 83/420 (19%), Positives = 138/420 (32%), Gaps = 65/420 (15%)

Query: 199 MNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILSLKSNQLR----GYLPSQIGSLTQLT 253
           M+L  +  ++    +L+       L  L +  ++ L    L       + S +     L 
Sbjct: 1   MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 254 ALDLSCNQFQGPVPSSISE-LK----RLEYLDLHSNNLS--GNVYIEELLPKLKSLIVLF 306
            L+L  N+        + + L+    +++ L L +  L+  G   +   L  L +L  L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 307 LSANNLS-----LITRN--TVNIRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELL 354
           LS N L      L+         RL+     L L  C+L     +     L  +   + L
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEK----LQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 355 DLSANKIPGKIPGWL---LNVTTGNLQFVNLSYNLITGFDRGSVVLLW-----TDLVTLD 406
            +S N I       L   L  +   L+ + L    +T        L         L  L 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVASKASLRELA 233

Query: 407 LRSNKLQ-------GPLPIPPESTIHYL-VSNNLLTGK----LAPWLCNLNSLRVLDLSH 454
           L SNKL         P  + P S +  L +    +T K    L   L    SL+ L L+ 
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFLDLGNNQ 510
           N L     + L  + + +    L+ + +                LA    L  L + NN+
Sbjct: 294 NELGDEGARLLCET-LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 511 IAD-----IFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF---PKLRIIDLSHNRFS 562
           + D     +          L+VL L       +               LR +DLS+N   
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.9 bits (216), Expect = 4e-18
 Identities = 79/423 (18%), Positives = 142/423 (33%), Gaps = 73/423 (17%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL----IGEFPSWLMNLTQLTY 206
             ++ L++     S    A    +    +   + L +  L      +  S L     L  
Sbjct: 3   LDIQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 207 INFDLNQLTGP----IPNWLANLN-RLTILSLKSNQLR----GYLPSQIGSLTQLTALDL 257
           +N   N+L       +   L   + ++  LSL++  L     G L S + +L  L  L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 258 SCNQFQGPVPSSISELKR-----LEYLDLHSNNLS--GNVYIEELLPKLKSLIVLFLSAN 310
           S N         + E        LE L L   +LS      +  +L        L +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 311 NLS---------LITRNTVNIRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDL 356
           +++          +  +   +        L L SC +     ++    +  +  L  L L
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLE------ALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 357 SANKIPG---KIPGWLLNVTTGNLQFVNLSYNLITGFDRG-----SVVLLWTDLVTLDLR 408
            +NK+           L   +  L+ + +    IT   +G      V+     L  L L 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLCRVLRAKESLKELSLA 292

Query: 409 SNKLQ-------GPLPIPPESTIHYL-VSNNLLTGK----LAPWLCNLNSLRVLDLSHNF 456
            N+L            + P   +  L V +   T       +  L     L  L +S+N 
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 457 L--SGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ----GRIPRSLANCTMLEFLDLGNNQ 510
           L  +GV  + L    + +  + L+++ L+   +       +  +L     L  LDL NN 
Sbjct: 353 LEDAGV--RELCQG-LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 511 IAD 513
           + D
Sbjct: 410 LGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 85/453 (18%), Positives = 151/453 (33%), Gaps = 78/453 (17%)

Query: 92  LNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT 151
           L++    +      +  L  L+  + + L D         +   ++SS      +L    
Sbjct: 8   LDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLT----EARCKDISS------ALRVNP 56

Query: 152 KLKCLELSQNNFSSPHSASFSWIAK--QTELSWLALANINL----IGEFPSWLMNLTQLT 205
            L  L L  N              +    ++  L+L N  L     G   S L  L  L 
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 206 YINFDLNQLTGPIPNWLA-----NLNRLTILSLKSNQLR----GYLPSQIGSLTQLTALD 256
            ++   N L       L         RL  L L+   L       L S + +      L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 257 LSCNQFQGPVPSSISE-LK----RLEYLDLHSNNLS--GNVYIEELLPKLKSLIVLFLSA 309
           +S N         + + LK    +LE L L S  ++      +  ++    SL  L L +
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 310 NNLS-------LITRNTVNIRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLS 357
           N L               + RL+     L +  C +      +    L  ++ L+ L L+
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRT----LWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 358 ANKIPGK----IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLW-----TDLVTLDLR 408
            N++  +    +   LL      L+ + +     T                  L+ L + 
Sbjct: 293 GNELGDEGARLLCETLLEPGC-QLESLWVKSCSFT--AACCSHFSSVLAQNRFLLELQIS 349

Query: 409 SNKLQ--GPLPI-----PPESTIHYL-VSNNLLTGK----LAPWLCNLNSLRVLDLSHNF 456
           +N+L+  G   +      P S +  L +++  ++      LA  L   +SLR LDLS+N 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 457 L--SGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
           L  +G+    L  S + +    L+ + L     
Sbjct: 410 LGDAGI--LQLVES-VRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 59/359 (16%), Positives = 108/359 (30%), Gaps = 69/359 (19%)

Query: 400 TDLVTLDLRSNKLQGP-----LPIPPESTIHYLVSNNLL---TGKLAPWLCNLNSLRVLD 451
            D+ +LD++  +L        LP+  +  +  L    L       ++  L    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 452 LSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFLDLG 507
           L  N L  V   C+    +   +  ++ + L +  L G     +  +L     L+ L L 
Sbjct: 63  LRSNELGDVGVHCVL-QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 508 NNQIAD-----IFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF---PKLRIIDLSHN 559
           +N + D     +    L     L+ L L++              V    P  + + +S+N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNN 180

Query: 560 RFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI 619
             +                          +   + L   L  S        L+ +   S 
Sbjct: 181 DIN--------------------------EAGVRVLCQGLKDSPC-----QLEALKLESC 209

Query: 620 TMVNKGIEM--NYGKVSNFLTGIILSNNKLIGKIPTSISE-LKGLNC----LNLSGNNL- 671
            + +               L  + L +NKL       +   L   +     L +    + 
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 672 ---LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL-----TSLAVFDVSDNNLTGQ 722
               G +   L     L+ L L+ N L  E  R L E        L    V   + T  
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 74/413 (17%), Positives = 127/413 (30%), Gaps = 77/413 (18%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRG-----SVVLLWTDLVTL 405
           ++ LD+   ++       LL +     Q V L    +T  +       S + +   L  L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLT--EARCKDISSALRVNPALAEL 61

Query: 406 DLRSNKLQGP--------LPIPPESTIHYLVSNNLLTGK----LAPWLCNLNSLRVLDLS 453
           +LRSN+L           L  P        + N  LTG     L+  L  L +L+ L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFL----- 504
            N L     Q L    +      L+ + L +  L       +   L      + L     
Sbjct: 122 DNLLGDAGLQLLCEG-LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF---PKLRIIDLSHNRF 561
           D+    +  +      +  +L+ L L+           D   +      LR + L     
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGS--- 236

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM 621
                       N +     ++L      P   L   L      I       +    +  
Sbjct: 237 ------------NKLGDVGMAELCPGLLHPSSRLRT-LWIWECGITAKGCGDL-CRVL-- 280

Query: 622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISE-LKGLNC----LNLSGNNL----L 672
                     +    L  + L+ N+L  +    + E L    C    L +   +      
Sbjct: 281 ----------RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330

Query: 673 GHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL-----TSLAVFDVSDNNLT 720
            H  S L     L  L +SNN L     R+L +      + L V  ++D +++
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.9 bits (233), Expect = 4e-20
 Identities = 64/406 (15%), Positives = 118/406 (29%), Gaps = 86/406 (21%)

Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
             +L+Q ++ N  ++       +      +  +     N+    L      + Q + L L
Sbjct: 10  NFSLSQNSFYN-TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQL 66

Query: 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITR 317
           +       +P ++    ++  L++  N L        L     SL  L    N LS    
Sbjct: 67  NRLNLSS-LPDNL--PPQITVLEITQNALI------SLPELPASLEYLDACDNRLS---- 113

Query: 318 NTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL 377
                               L E          L+ LD+  N++   +P          L
Sbjct: 114 -------------------TLPELPA------SLKHLDVDNNQLT-MLPELP-----ALL 142

Query: 378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKL 437
           +++N   N +T         L T L  L +R+N+L     +P                  
Sbjct: 143 EYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTF---LPEL---------------- 178

Query: 438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN 497
                   SL  LD+S N L   LP     +    +           N +   IP ++ +
Sbjct: 179 ------PESLEALDVSTNLLES-LPAVPVRNH--HSEETEIFFRCRENRIT-HIPENILS 228

Query: 498 CTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS 557
                 + L +N ++      L               F    G+ +T        + D  
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH----RPLADAV 284

Query: 558 HNRFSGKLPSKYFQCWNAI-KVANKSQLKYMQDQPGQSLNYILPSS 602
              F     S   Q W+A     + +      D+   +++    S 
Sbjct: 285 TAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 6e-16
 Identities = 49/332 (14%), Positives = 97/332 (29%), Gaps = 76/332 (22%)

Query: 415 PLPIPPESTIHYLVSNNLLTG---KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF 471
            LPI    ++      N ++G                +   + N    +L +CL      
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL------ 57

Query: 472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQ 531
                   + L+   L   +P +L     +  L++  N +  + P    +L  L     +
Sbjct: 58  --INQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALISL-PELPASLEYLDACDNR 111

Query: 532 FNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQP 591
            +                 L+ +D+ +N                       QL  + + P
Sbjct: 112 LSTLPELPA---------SLKHLDVDNN-----------------------QLTMLPELP 139

Query: 592 GQ------SLNYI--LPSSSAYIFDYSLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGII 641
                     N +  LP         SL+ +   +  +T + +  E         L  + 
Sbjct: 140 ALLEYINADNNQLTMLPELPT-----SLEVLSVRNNQLTFLPELPES--------LEALD 186

Query: 642 LSNNKLIGKIPTSISELKGL----NCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG 697
           +S N L   +P                     N + HIP ++ +L    ++ L +N LS 
Sbjct: 187 VSTNLLES-LPAVPVRNHHSEETEIFFRCR-ENRITHIPENILSLDPTCTIILEDNPLSS 244

Query: 698 EIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF 729
            I   L++ T+   +       +    Q    
Sbjct: 245 RIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.5 bits (193), Expect = 3e-15
 Identities = 71/425 (16%), Positives = 133/425 (31%), Gaps = 59/425 (13%)

Query: 92  LNLTSSCIYGSINS--SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGN 149
            +L+ +  Y +I+   +         E  +L   N N            S    +     
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN---------EAVS----LLKECL 57

Query: 150 LTKLKCLELSQNNFSS-PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
           + +   L+L++ N SS P +     +  Q  ++ L +   N +   P    +L  L   +
Sbjct: 58  INQFSELQLNRLNLSSLPDN-----LPPQ--ITVLEITQ-NALISLPELPASLEYL---D 106

Query: 209 FDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268
              N+L+  +P   A+L     L + +NQL   LP     L     ++   NQ    +P 
Sbjct: 107 ACDNRLST-LPELPASLKH---LDVDNNQLT-MLPELPALLEY---INADNNQLTM-LPE 157

Query: 269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN-IRLQNK 327
             +    LE L + +N L        L    +SL  L +S N L  +    V     +  
Sbjct: 158 LPT---SLEVLSVRNNQL------TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEET 208

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
            +F       +    + +   D    + L  N +  +I   L   T          Y  +
Sbjct: 209 EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 388 TGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSL 447
           +   + ++     D VT     NK      I       +    N  +  L   L +  S 
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIW--HAFEHEEHANTFSAFLD-RLSDTVSA 325

Query: 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507
           R        ++  L +           +    +      +      S  +   L + +L 
Sbjct: 326 RNTSGFREQVAAWLEKL----------SASAELRQQSFAVAADATESCEDRVALTWNNLR 375

Query: 508 NNQIA 512
              + 
Sbjct: 376 KTLLV 380

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 61/347 (17%), Positives = 96/347 (27%), Gaps = 63/347 (18%)

Query: 124 NFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWL 183
           NF+  K           +  V   G    L+ L    +  +      F+ I K   L  L
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQ--FTDIIKSLSLKRL 73

Query: 184 ALANINLIGEFPSW---LMNLTQLTYINFDLNQLTGPIPNWLANL--NRLTILSLKSNQL 238
            +    +          ++ ++ L  +  +  ++TG  P  L       L IL+L++   
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 239 RGYLPS----QIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE 294
                     Q      L  L ++           +     L  LDL  N   G   +  
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 295 LLP--KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLE 352
            L   K  +L VL L    +   +                               + QL+
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPS----------------------GVCSALAAARVQLQ 231

Query: 353 LLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKL 412
            LDLS N +     G         L  +NLS+  +    +G    L   L  LDL  N+L
Sbjct: 232 GLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKG----LPAKLSVLDLSYNRL 286

Query: 413 QGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
                                     P    L  +  L L  N    
Sbjct: 287 DR-----------------------NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 56/303 (18%), Positives = 94/303 (31%), Gaps = 47/303 (15%)

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISEL---KRLEYLD 280
             +   +L     +      + I     L  L +   +    +      +     L+ L 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKE 340
           L +  ++G      L      L +L L             N+    +  +L      LK 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLR------------NVSWATRDAWLAELQQWLKP 149

Query: 341 FLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG---FDRGSVVL 397
                     L++L ++            + V    L  ++LS N   G          L
Sbjct: 150 ---------GLKVLSIAQAHS-LNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPL 198

Query: 398 LWTDLVTLDLRSNKLQGPLPIPPEST-----IHYL-VSNNLLTGKLAPWLC-NLNSLRVL 450
            +  L  L LR+  ++ P  +          +  L +S+N L        C   + L  L
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 451 DLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ 510
           +LS   L  V P+ L           L ++DLS+N L  R P S      +  L L  N 
Sbjct: 259 NLSFTGLKQV-PKGLP--------AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNP 307

Query: 511 IAD 513
             D
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 28/233 (12%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147
            + +L L +  + G+            L  L+L   N +++   + +  L  +       
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNL--RNVSWATRDAWLAELQQWL------ 147

Query: 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGE-------FPSWLMN 200
                LK L ++Q +     + S   +     LS L L++   +GE        P     
Sbjct: 148 --KPGLKVLSIAQAHSL---NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS-LTQLTALDLSC 259
           L  L   N  +   +G      A   +L  L L  N LR    +      +QL +L+LS 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL 312
              +  VP  +    +L  LDL  N L  N   +E LP++ +   L L  N  
Sbjct: 263 TGLKQ-VPKGLP--AKLSVLDLSYNRLDRNPSPDE-LPQVGN---LSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 54/291 (18%), Positives = 95/291 (32%), Gaps = 39/291 (13%)

Query: 104 NSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNF 163
             +        ++ LSL       ++IPS I+           +  ++ L+ L L     
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILF------GALRVLGISGLQELTLENLEV 107

Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA 223
           +          A   +L+ L L N++      +WL  L Q                    
Sbjct: 108 TGTAPPPLL-EATGPDLNILNLRNVSWAT-RDAWLAELQQWL------------------ 147

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS----ELKRLEYL 279
               L +LS+       +   Q+     L+ LDLS N   G      +    +   L+ L
Sbjct: 148 -KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 280 DLHSNNL-SGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
            L +  + + +     L      L  L LS N+L        +    ++   L L+   L
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-AGAPSCDWPSQLNSLNLSFTGL 265

Query: 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG 389
           K+    L    +L +LDLS N++        L      +  ++L  N    
Sbjct: 266 KQVPKGLP--AKLSVLDLSYNRLDRNPSPDELP----QVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 60/284 (21%), Positives = 90/284 (31%), Gaps = 50/284 (17%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM--LEF 503
           SL+ L +    +   +             + L+ + L +  + G  P  L   T   L  
Sbjct: 69  SLKRLTVRAARIPSRILFGALR---VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 504 LDLGNNQIADIFPSWLGTL-----PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH 558
           L+L N   A    +WL  L     P LKVL +            +   VFP L  +DLS 
Sbjct: 126 LNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHS--LNFSCEQVRVFPALSTLDLSD 182

Query: 559 NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYS 618
           N   G+       C          Q+  +++   ++ + +  + +A      LQ +    
Sbjct: 183 NPELGERGLISALCPLKFP---TLQVLALRNAGMETPSGVCSALAAAR--VQLQGLD--- 234

Query: 619 ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPS 677
                                  LS+N L              LN LNLS   L   +P 
Sbjct: 235 -----------------------LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPK 270

Query: 678 SLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721
            L     L  LDLS N L    P    EL  +    +  N    
Sbjct: 271 GL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 11/207 (5%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL------VS 429
           +L+++    +      + + ++    L  L +R+ ++   +       +         + 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 430 NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG 489
           N  +TG   P L       +  L+   +S                  LK++ ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 490 RIPRSLANCTMLEFLDLGNNQIADIFPSW----LGTLPELKVLMLQFNRFHGEIGEPDTG 545
                +     L  LDL +N                 P L+VL L+        G     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 546 FV-FPKLRIIDLSHNRFSGKLPSKYFQ 571
                +L+ +DLSHN       +    
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 5e-08
 Identities = 39/273 (14%), Positives = 79/273 (28%), Gaps = 50/273 (18%)

Query: 463 QCLSNS--KIFKNATNLKMIDLSHNL-LQGRIPRSLANCTMLEFLDLGNNQIADIFPSW- 518
            CL  +  +++    +L+ +    +          +     L+ L +   +I        
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 519 --LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576
             +  +  L+ L L+     G    P      P L I++L +  ++              
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------------- 135

Query: 577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN-KGIEMNYGKVSN 635
                                   +  A +  +    +   SI   +         +V  
Sbjct: 136 ----------------------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 636 FLTGIILSNNKLIGKI-------PTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESL 688
            L+ + LS+N  +G+        P     L+ L   N       G   +       L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 689 DLSNNNLSGEIPRQL-AELTSLAVFDVSDNNLT 720
           DLS+N+L            + L   ++S   L 
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 57/272 (20%), Positives = 89/272 (32%), Gaps = 60/272 (22%)

Query: 266 VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
           VP  I      + + LH N +S            ++L +L+L +N L+ I          
Sbjct: 26  VPVGIPA--ASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAA------ 75

Query: 326 NKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIP-GWLLNVTTGNLQFVNLSY 384
               F GLA                LE LDLS N     +       +    L  ++L  
Sbjct: 76  ----FTGLAL---------------LEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDR 114

Query: 385 NLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNL 444
             +     G    L   L  L L+ N LQ    +P +                     +L
Sbjct: 115 CGLQELGPGLFRGL-AALQYLYLQDNALQA---LPDD------------------TFRDL 152

Query: 445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFL 504
            +L  L L  N +S V        + F+   +L  + L  N +    P +  +   L  L
Sbjct: 153 GNLTHLFLHGNRISSVPE------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 505 DLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
            L  N ++ +    L  L  L+ L L  N + 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 53/211 (25%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN-F 163
            ++S    R+L  L L  N    ++I +             +   L  L+ L+LS N   
Sbjct: 48  PAASFRACRNLTILWLHSNVL--ARIDAA------------AFTGLALLEQLDLSDNAQL 93

Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTGPIPNWL 222
            S   A+F        L  L L     + E        L  L Y+    N L     +  
Sbjct: 94  RSVDPATFH---GLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
            +L  LT L L  N++          L  L  L L  N+     P +  +L RL  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 283 SNNLSGNVYI-EELLPKLKSLIVLFLSANNL 312
           +NNLS    +  E L  L++L  L L+ N  
Sbjct: 210 ANNLS---ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 52/262 (19%), Positives = 80/262 (30%), Gaps = 58/262 (22%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
              + L  N++     +   +   LT L L  N       ++ + L  LE LDL  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 288 GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND 347
            +V        L  L  L L    L  +              F GLA+            
Sbjct: 94  RSVD-PATFHGLGRLHTLHLDRCGLQELGPGL----------FRGLAA------------ 130

Query: 348 QDQLELLDLSANKIPGKIP-GWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406
              L+ L L  N +   +P     ++   NL  + L  N I+     +   L   L  L 
Sbjct: 131 ---LQYLYLQDNAL-QALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGL-HSLDRLL 183

Query: 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS 466
           L  N++     + P +                    +L  L  L L  N LS  LP    
Sbjct: 184 LHQNRVAH---VHPHA------------------FRDLGRLMTLYLFANNLS-ALPT--- 218

Query: 467 NSKIFKNATNLKMIDLSHNLLQ 488
             +       L+ + L+ N   
Sbjct: 219 --EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 55/262 (20%), Positives = 85/262 (32%), Gaps = 60/262 (22%)

Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLS 308
                + L  N+      +S    + L  L LHSN L+    I+      L  L  L LS
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA---RIDAAAFTGLALLEQLDLS 88

Query: 309 ANN-LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
            N  L  +   T          F GL                +L  L L    +    PG
Sbjct: 89  DNAQLRSVDPAT----------FHGLG---------------RLHTLHLDRCGLQELGPG 123

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427
               +    LQ++ L  N +      +   L  +L  L L  N++     +P  +     
Sbjct: 124 LFRGLA--ALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISS---VPERA----- 172

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
                           L+SL  L L  N ++ V      +   F++   L  + L  N L
Sbjct: 173 -------------FRGLHSLDRLLLHQNRVAHV------HPHAFRDLGRLMTLYLFANNL 213

Query: 488 QGRIPRSLANCTMLEFLDLGNN 509
                 +LA    L++L L +N
Sbjct: 214 SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 50/236 (21%), Positives = 72/236 (30%), Gaps = 35/236 (14%)

Query: 178 TELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
                + L   N I   P+        LT +    N L          L  L  L L  N
Sbjct: 32  AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 237 QLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYI-EE 294
                +       L +L  L L     Q   P     L  L+YL L  N L     + ++
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---ALPDD 147

Query: 295 LLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELL 354
               L +L  LFL  N +S +              F GL S               L+ L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERA----------FRGLHS---------------LDRL 182

Query: 355 DLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            L  N++    P    ++    L  + L  N ++     ++  L   L  L L  N
Sbjct: 183 LLHQNRVAHVHPHAFRDLG--RLMTLYLFANNLSALPTEALAPL-RALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 50/260 (19%), Positives = 83/260 (31%), Gaps = 36/260 (13%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C              L  V P  +            + I L  N +      S   C  L
Sbjct: 8   CYNEPKVTTSCPQQGLQAV-PVGIP--------AASQRIFLHGNRISHVPAASFRACRNL 58

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF-PKLRIIDLSHNR 560
             L L +N +A I  +    L  L+ L L  N     +      F    +L  + L    
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV--DPATFHGLGRLHTLHLDRCG 116

Query: 561 FSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY-ILPSSSAYIFDY--SLQYIYAY 617
              +L    F+          + L+Y+       L    L +     F    +L +++ +
Sbjct: 117 LQ-ELGPGLFR--------GLAALQYL------YLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 618 S--ITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI 675
              I+ V +            L  ++L  N++    P +  +L  L  L L  NNL    
Sbjct: 162 GNRISSVPERAFRGLHS----LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 676 PSSLGNLTVLESLDLSNNNL 695
             +L  L  L+ L L++N  
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 41/252 (16%), Positives = 74/252 (29%), Gaps = 51/252 (20%)

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
            + + L  N+I+ +  +       L +L L  N     I +         L  +DLS N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI-DAAAFTGLALLEQLDLSDNA 91

Query: 561 FSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620
               +    F            +L  +                         ++    + 
Sbjct: 92  QLRSVDPATFH--------GLGRLHTL-------------------------HLDRCGLQ 118

Query: 621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPSSL 679
            +  G+          L  + L +N  +  +P     +L  L  L L GN +      + 
Sbjct: 119 ELGPGLFRGLAA----LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEG 739
             L  L+ L L  N ++   P    +L  L    +  NNL+  +P           +   
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE---------ALAP 223

Query: 740 NPGLCGKPLSRN 751
              L    L+ N
Sbjct: 224 LRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 30/136 (22%), Positives = 41/136 (30%), Gaps = 19/136 (13%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
                  L  L++L L DN      +P +               +L  L  L L  N  S
Sbjct: 121 GPGLFRGLAALQYLYLQDNAL--QALPDDT------------FRDLGNLTHLFLHGNRIS 166

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTGPIPNWLA 223
           S    +F        L  L L   N +         +L +L  +    N L+      LA
Sbjct: 167 SVPERAFR---GLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 224 NLNRLTILSLKSNQLR 239
            L  L  L L  N   
Sbjct: 223 PLRALQYLRLNDNPWV 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 51/276 (18%), Positives = 95/276 (34%), Gaps = 38/276 (13%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
           +IN       L +   ++   +N                     +  +L  +  L     
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVT----------------DTVTQADLDGITTLSAFGT 51

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW 221
             +     +   +     L  L L + N I +    L NLT++T +    N L       
Sbjct: 52  GVT-----TIEGVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGNPLKNVSA-- 102

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
           +A L  +  L L S Q+     + +  L+ L  L L  NQ      S ++ L  L+YL +
Sbjct: 103 IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSI 158

Query: 282 HSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEF 341
            +  +S    +   L  L  L  L    N +S I+       L      + L +  + + 
Sbjct: 159 GNAQVSD---LTP-LANLSKLTTLKADDNKISDISPLASLPNLIE----VHLKNNQISD- 209

Query: 342 LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL 377
           +  L +   L ++ L+   I  +   +  N+   N+
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 27/235 (11%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQ---- 143
           + IK+    S    ++  + +   L  +  LS         +    + NL     +    
Sbjct: 20  NAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 144 --VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNL 201
             +  L NLTK+  LELS N        + S IA    +  L L +   I +    L  L
Sbjct: 76  TDLAPLKNLTKITELELSGNPLK-----NVSAIAGLQSIKTLDLTS-TQITDVTP-LAGL 128

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
           + L  +  DLNQ+T  I   LA L  L  LS+ + Q+    P  + +L++LT L    N+
Sbjct: 129 SNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316
                 S ++ L  L  + L +N +S        L    +L ++ L+   ++   
Sbjct: 185 ISD--ISPLASLPNLIEVHLKNNQISD----VSPLANTSNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 24/262 (9%)

Query: 178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ 237
                +A    N+         +L  +T ++     +T  I   +  LN L  L LK NQ
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQ 74

Query: 238 LRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP 297
           +    P  + +LT++T L+LS N  +    S+I+ L+ ++ LDL S  ++    +   L 
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITD---VTP-LA 126

Query: 298 KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLS 357
            L +L VL+L  N ++ I+       LQ     L + +  + + L  L +  +L  L   
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQY----LSIGNAQVSD-LTPLANLSKLTTLKAD 181

Query: 358 ANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP 417
            NKI   I   L ++   NL  V+L  N I+     S +   ++L  + L +  +     
Sbjct: 182 DNKIS-DISP-LASLP--NLIEVHLKNNQISDV---SPLANTSNLFIVTLTNQTITNQPV 234

Query: 418 IPPESTIHYLVSNNLLTGKLAP 439
               + +   V        +AP
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 55/268 (20%), Positives = 97/268 (36%), Gaps = 53/268 (19%)

Query: 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327
                L     +    +N++  V   +    L  +  L      ++ I            
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQAD----LDGITTLSAFGTGVTTI------------ 56

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
                       E + +LN    L  L+L  N+I   +   L N+T   +  + LS N +
Sbjct: 57  ------------EGVQYLN---NLIGLELKDNQI-TDLAP-LKNLT--KITELELSGNPL 97

Query: 388 TGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNS 446
                 S +     + TLDL S ++    P+   S +  L +  N +T  ++P L  L +
Sbjct: 98  KNV---SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTN 152

Query: 447 LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDL 506
           L+ L + +  +S + P          N + L  +    N +   I   LA+   L  + L
Sbjct: 153 LQYLSIGNAQVSDLTP--------LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHL 202

Query: 507 GNNQIADIFPSWLGTLPELKVLMLQFNR 534
            NNQI+D+  S L     L ++ L    
Sbjct: 203 KNNQISDV--SPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 26/214 (12%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
               +    + +   +    L+     +  ++     +T       V    +L+ L+L+ 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLD----GITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72

Query: 410 NKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468
           N++    P+   + I  L +S N L   ++  +  L S++ LDL+   ++ V P      
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP------ 124

Query: 469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVL 528
                 +NL+++ L  N +    P  LA  T L++L +GN Q++D+ P  L  L +L  L
Sbjct: 125 --LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 529 MLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
               N+    I +       P L  + L +N+ S
Sbjct: 179 KADDNK----ISDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 62/280 (22%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
             +L+ +  L      ++ +        +  +   NL  ++L  N +   +   L N T 
Sbjct: 37  QADLDGITTLSAFGTGVTTI--------EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTK 86

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           +  L+L  N + ++    +  L  +K L L   +                L+++ L  N 
Sbjct: 87  ITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAG----LSNLQVLYLDLN- 139

Query: 561 FSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT 620
                           ++ N S L  +                      +LQY+   +  
Sbjct: 140 ----------------QITNISPLAGLT---------------------NLQYLSIGN-- 160

Query: 621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG 680
              +  ++      + LT +   +NK I  I   ++ L  L  ++L  N +     S L 
Sbjct: 161 --AQVSDLTPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDV--SPLA 214

Query: 681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
           N + L  + L+N  ++ +       L    V         
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 44/264 (16%), Positives = 87/264 (32%), Gaps = 58/264 (21%)

Query: 459 GVLPQCLSNSKIF--KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516
           G + Q  + + IF      N   I    + +   +    A+   +  L      +  I  
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58

Query: 517 SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI 576
             +  L  L  L L+ N+    I +        K+  ++LS N                 
Sbjct: 59  --VQYLNNLIGLELKDNQ----ITDLAPLKNLTKITELELSGNPLK-------------- 98

Query: 577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNF 636
            V+  + L+                        S++ +   S     +  ++      + 
Sbjct: 99  NVSAIAGLQ------------------------SIKTLDLTS----TQITDVTPLAGLSN 130

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + L  N+ I  I   ++ L  L  L++    +     + L NL+ L +L   +N +S
Sbjct: 131 LQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS 186

Query: 697 GEIPRQLAELTSLAVFDVSDNNLT 720
              P  LA L +L    + +N ++
Sbjct: 187 DISP--LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQ------VPSLGNLTKLKCL 156
           I   + L  L +L+ L L  N        + + NL   S        +  L NL+KL  L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178

Query: 157 ELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG 216
           +   N  S       S +A    L  + L N N I +    L N + L  +      +T 
Sbjct: 179 KADDNKISD-----ISPLASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTNQTITN 231

Query: 217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
               +  NL    ++   S       P+ I       + +L+ N 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + + N + +  +   ++ L  L  L    N +     S L +L  L  + L NN +S
Sbjct: 153 LQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQIS 208

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENS 735
              P  LA  ++L +  +++  +T Q           N 
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           +T +       +  I   +  L  L  L L  N +   + + L NLT +  L+LS N L 
Sbjct: 43  ITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQI-TDL-APLKNLTKITELELSGNPLK 98

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIP 724
                 +A L S+   D++   +T   P
Sbjct: 99  NVSA--IAGLQSIKTLDLTSTQITDVTP 124

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 4e-17
 Identities = 54/301 (17%), Positives = 107/301 (35%), Gaps = 40/301 (13%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147
             IK NL       S+  + +   L  ++ +   ++            ++ S  G    +
Sbjct: 22  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNS------------DIKSVQG----I 61

Query: 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYI 207
             L  +  L L+ N  +         +     L WL L   N I +  S L +L +L  +
Sbjct: 62  QYLPNVTKLFLNGNKLT-----DIKPLTNLKNLGWLFLDE-NKIKDLSS-LKDLKKLKSL 114

Query: 208 NFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267
           + + N ++  I   L +L +L  L L +N++     + +  LT+L  L L  NQ      
Sbjct: 115 SLEHNGISD-ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD--I 168

Query: 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327
             ++ L +L+ L L  N++S    +   L  LK+L VL L +        N  +  +   
Sbjct: 169 VPLAGLTKLQNLYLSKNHIS---DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
            V     +       + ++D    E  ++  +          +      +      ++  
Sbjct: 225 TVKN---TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281

Query: 388 T 388
            
Sbjct: 282 V 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 9e-17
 Identities = 53/336 (15%), Positives = 94/336 (27%), Gaps = 102/336 (30%)

Query: 201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
           + +   ++  + Q+                 +LK   +   +      L  +  +  + +
Sbjct: 1   MGETITVSTPIKQIFP-----DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS 53

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTV 320
             +      I  L  +  L L+ N L+    I+ L   LK+L  LFL  N +  +     
Sbjct: 54  DIK--SVQGIQYLPNVTKLFLNGNKLTD---IKPL-TNLKNLGWLFLDENKIKDL----- 102

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
                                   L D  +L+ L L  N I                   
Sbjct: 103 ----------------------SSLKDLKKLKSLSLEHNGI------------------- 121

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440
               + I G            L +L L +NK+                            
Sbjct: 122 ----SDINGLVH------LPQLESLYLGNNKITDITV----------------------- 148

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
           L  L  L  L L  N +S ++P            T L+ + LS N +     R+LA    
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYLSKNHIS--DLRALAGLKN 198

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
           L+ L+L + +  +   +    L     +        
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.8 bits (204), Expect = 2e-16
 Identities = 57/335 (17%), Positives = 112/335 (33%), Gaps = 40/335 (11%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           I               +L   +                     +   L  +  +  + ++
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVT----------------DAVTQNELNSIDQIIANNSD 54

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
                  S   I     ++ L L   N + +    L NL  L ++  D N++   + + L
Sbjct: 55  IK-----SVQGIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDENKIKD-LSS-L 105

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
            +L +L  LSL+ N +     + +  L QL +L L  N+      + +S L +L+ L L 
Sbjct: 106 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161

Query: 283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFL 342
            N +S    I   L  L  L  L+LS N++S +        L    +F            
Sbjct: 162 DNQIS---DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDL 402
             L   + ++  D       G +    +    G+ +  N+ ++L    +  S +      
Sbjct: 218 SNLVVPNTVKNTD-------GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

Query: 403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKL 437
           +         +   P+    T+ Y V   ++  K+
Sbjct: 271 IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKV 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 46/227 (20%)

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           +      +  I  IFP       E     L+       + + +       +  I  +++ 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQNE----LNSIDQIIANNSD 54

Query: 561 FSGKLPSKYFQCWNAIKVANKSQLKYMQ--DQPGQSLNYILPSSSAYIFDYSLQYIYAYS 618
                            V     L  +      G  L  I P ++      +L +++   
Sbjct: 55  IK--------------SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLK----NLGWLF--- 93

Query: 619 ITMVNKGIEMNYGKVSNF-----LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG 673
             +    I+     +S+      L  + L +N  I  I   +  L  L  L L  N +  
Sbjct: 94  --LDENKIK----DLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKI-- 143

Query: 674 HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
              + L  LT L++L L +N +S  +P  LA LT L    +S N+++
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + L +N+ I  I   ++ L  L  L LS N++      +L  L  L+ L+L +    
Sbjct: 155 LDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 210

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLC 744
            +     + L        +D +L          +  + +     P   
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 29/213 (13%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
            S S F    L+ L L+        I         +         L+ L  L L+ N   
Sbjct: 44  GSYSFFSFPELQVLDLSRCEI--QTIEDGA-----YQS-------LSHLSTLILTGNPIQ 89

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWL-MNLTQLTYINFDLNQLTG-PIPNWL 222
           S    +FS     + L  L       +    ++   +L  L  +N   N +    +P + 
Sbjct: 90  SLALGAFS---GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 223 ANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTA----LDLSCNQFQGPVPSSISELKRLE 277
           +NL  L  L L SN+++  +       L Q+      LDLS N     +     +  RL+
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLK 203

Query: 278 YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
            L L +N L      + +  +L SL  ++L  N
Sbjct: 204 ELALDTNQLK--SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 58/216 (26%), Positives = 87/216 (40%), Gaps = 16/216 (7%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWL-MNLTQLTYINF 209
              K L+LS N      S SF       EL  L L+    I         +L+ L+ +  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLIL 83

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPS 268
             N +        + L+ L  L      L       IG L  L  L+++ N  Q   +P 
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 269 SISELKRLEYLDLHSNNLSGNVYIEEL--LPKLKSLIV-LFLSANNLSLITRNT-VNIRL 324
             S L  LE+LDL SN +  ++Y  +L  L ++  L + L LS N ++ I       IRL
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 325 QNKFVFLGLASCNLKEFLDFLNDQ-DQLELLDLSAN 359
           +     L L +  LK   D + D+   L+ + L  N
Sbjct: 203 KE----LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 26/220 (11%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            + LDLS N +         +     LQ ++LS   I   + G+   L + L TL L  N
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGN 86

Query: 411 KLQ----GPLPIPPESTIHYLVSNNLLTGKLAPWL-CNLNSLRVLDLSHNFLSGVLPQCL 465
            +Q    G             V  NL +  L  +   +L +L+ L+++HN +     Q  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLI-----QSF 139

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIP----RSLANCTMLEF-LDLGNNQIADIFPSWLG 520
              + F N TNL+ +DLS N +Q  I     R L    +L   LDL  N +  I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAF 197

Query: 521 TLPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHN 559
               LK L L  N+       PD  F     L+ I L  N
Sbjct: 198 KEIRLKELALDTNQLK---SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 35/175 (20%)

Query: 400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG 459
                LDL  N L+    +   S                    +   L+VLDLS   +  
Sbjct: 28  FSTKNLDLSFNPLRH---LGSYS------------------FFSFPELQVLDLSRCEIQ- 65

Query: 460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL 519
            +         +++ ++L  + L+ N +Q     + +  + L+ L      +A +    +
Sbjct: 66  TIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFVF---PKLRIIDLSHNRFSGKLPSKYFQ 571
           G L  LK L +  N        P+    F     L  +DLS N+    +     +
Sbjct: 121 GHLKTLKELNVAHNLIQ-SFKLPE---YFSNLTNLEHLDLSSNKIQ-SIYCTDLR 170

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 45/226 (19%), Positives = 73/226 (32%), Gaps = 26/226 (11%)

Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
            + K +DLS N L+     S  +   L+ LDL   +I  I      +L  L  L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 535 FHGEIGEPDTGFVF---PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQP 591
               I     G  F     L+ +       +  L +            +   LK +    
Sbjct: 88  ----IQSLALG-AFSGLSSLQKLVAVETNLA-SLENFPIG--------HLKTLKELNVAH 133

Query: 592 GQSLNYILPSSSAYIFDY--SLQYIYAYS--ITMVNKGIEMNYGKVSNFLTGIILSNNKL 647
               ++ LP      F    +L+++   S  I  +         ++      + LS N  
Sbjct: 134 NLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP- 188

Query: 648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693
           +  I     +   L  L L  N L          LT L+ + L  N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 637 LTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNL 695
           L+ +IL+ N +   +     S L  L  L     NL       +G+L  L+ L++++N +
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 696 -SGEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
            S ++P   + LT+L   D+S N +   I   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 28/196 (14%), Positives = 74/196 (37%), Gaps = 24/196 (12%)

Query: 93  NLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK 152
              +  +  S  ++ +   +  L +++LA+ N            ++  +G    +     
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANIN------------VTDLTG----IEYAHN 67

Query: 153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN 212
           +K L ++  + ++     ++ I+  + L  L +   ++  +    L  LT LT ++   +
Sbjct: 68  IKDLTINNIHATN-----YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 213 QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE 272
                I   +  L ++  + L  N     +   + +L +L +L++  +         I +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIED 179

Query: 273 LKRLEYLDLHSNNLSG 288
             +L  L   S  + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 28/168 (16%), Positives = 60/168 (35%), Gaps = 13/168 (7%)

Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
                    L Q++ ++   A          L+++ LAN   + +    +     +  + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM------NSLTYITLAN-INVTDLTG-IEYAHNIKDLT 72

Query: 209 FDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268
            +    T   P  ++ L+ L  L +    +       +  LT LT LD+S +     + +
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316
            I+ L ++  +DL  N    ++     L  L  L  L +  + +    
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDGVHDYR 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 13/160 (8%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLT 434
           +L ++ L+   +T      +     ++  L + +       PI   S +  L +    +T
Sbjct: 45  SLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS 494
               P L  L SL +LD+SH+     +   ++          +  IDLS+N     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL------PKVNSIDLSYNGAITDIM-P 154

Query: 495 LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
           L     L+ L++  + + D     +   P+L  L      
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 19/122 (15%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
           +   ++++ L +++   +   P            +NL+ + +    +      +L+  T 
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--------ISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           L  LD+ ++   D   + + TLP++  + L +N   G I +       P+L+ +++  + 
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYN---GAITDIMPLKTLPELKSLNIQFDG 170

Query: 561 FS 562
             
Sbjct: 171 VH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 20/168 (11%)

Query: 400 TDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
             L  + L +  +     I     I  L ++N   T    P +  L++L  L +    ++
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVT 101

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDL-GNNQIADIFPS 517
                 LS        T+L ++D+SH+     I   +     +  +DL  N  I DI P 
Sbjct: 102 SDKIPNLSGL------TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 518 WLGTLPELKVLMLQFNRFHG--EIGEPDTGFVFPKLRIIDLSHNRFSG 563
            L TLPELK L +QF+  H    I +      FPKL  +        G
Sbjct: 155 -LKTLPELKSLNIQFDGVHDYRGIED------FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           LT + +S++     I T I+ L  +N ++LS N  +  I   L  L  L+SL++  + + 
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTG 721
                 + +   L         + G
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           +  + ++N          IS L  L  L + G ++      +L  LT L  LD+S++   
Sbjct: 68  IKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQI 723
             I  ++  L  +   D+S N     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 23/170 (13%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLR 408
           + L  + L+   +   + G +      N++ + ++    T +   + +   ++L  L + 
Sbjct: 44  NSLTYITLANINV-TDLTG-IEYAH--NIKDLTINNIHATNY---NPISGLSNLERLRIM 96

Query: 409 SNKLQGPLPIPPESTIHYL----VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
              +     IP  S +  L    +S++     +   +  L  +  +DLS+N         
Sbjct: 97  GKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN-------GA 148

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI 514
           +++    K    LK +++  + +       + +   L  L   +  I   
Sbjct: 149 ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           LT I L+N   +  + T I     +  L ++  +      + +  L+ LE L +   +++
Sbjct: 46  LTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVT 101

Query: 697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQG 726
            +    L+ LTSL + D+S +     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 33/188 (17%)

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLT-------------------QLTALDLSCNQFQ 263
           +         L  +       +Q+ SLT                    +  L ++     
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 264 GPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIR 323
               + IS L  LE L +   +++ +  I   L  L SL +L +S +       +++  +
Sbjct: 80  N--YNPISGLSNLERLRIMGKDVT-SDKIPN-LSGLTSLTLLDISHSAHD----DSILTK 131

Query: 324 LQN--KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVN 381
           +    K   + L+       +  L    +L+ L++  + +     G + +     L  + 
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV-HDYRG-IEDFP--KLNQLY 187

Query: 382 LSYNLITG 389
                I G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 29/207 (14%), Positives = 57/207 (27%), Gaps = 51/207 (24%)

Query: 494 SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRI 553
           + A    L ++ L N  + D+    +     +K L +            +       L  
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH----ATNYNPISGLSNLER 92

Query: 554 IDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY 613
           + +     +              K+ N S L                         SL  
Sbjct: 93  LRIMGKDVTS------------DKIPNLSGLT------------------------SLTL 116

Query: 614 IYAYSITMVNKGIEMNYGKVSNF--LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNL 671
           +        +   +    K++    +  I LS N  I  I   +  L  L  LN+  + +
Sbjct: 117 LDISH----SAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 672 LGHIPSSLGNLTVLESLDLSNNNLSGE 698
             H    + +   L  L   +  + G+
Sbjct: 172 --HDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 10/116 (8%)

Query: 457 LSGVLPQCLSNSKI----FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA 512
               L   L  S           +L  I L++  +       +     ++ L + N    
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT 79

Query: 513 DIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSK 568
           +  P  +  L  L+ L +       +     +G     L ++D+SH+     + +K
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHDDSILTK 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 16/187 (8%)

Query: 130 IPSEIMNLSSFSGQVPSL-----GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLA 184
           +P +   L      + +         T+L  L L +   +               L  L 
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----GTLPVLGTLD 83

Query: 185 LANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPS 244
           L++ N +   P     L  LT ++   N+LT      L  L  L  L LK N+L+  LP 
Sbjct: 84  LSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 245 QI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLI 303
            +     +L  L L+ N         ++ L+ L+ L L  N+L     I +       L 
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT---IPKGFFGSHLLP 198

Query: 304 VLFLSAN 310
             FL  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 21/182 (11%)

Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ 203
           +P          L LS+N   +   A+       T L+ L L     + +       L  
Sbjct: 25  LPP-DLPKDTTILHLSENLLYTFSLATLM---PYTRLTQLNLDR-AELTKLQVD-GTLPV 78

Query: 204 LTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQF 262
           L  ++   NQL   +P     L  LT+L +  N+L   LP      L +L  L L  N+ 
Sbjct: 79  LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIVLFLSANNLSLITR 317
           +   P  ++   +LE L L +NNL+        LP      L++L  L L  N+L  I +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-------LPAGLLNGLENLDTLLLQENSLYTIPK 189

Query: 318 NT 319
             
Sbjct: 190 GF 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 48/185 (25%), Positives = 70/185 (37%), Gaps = 32/185 (17%)

Query: 178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ 237
            + + L L+   L     + LM  T+LT +N D  +LT  +      L  L  L L  NQ
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQ 88

Query: 238 LRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LL 296
           L+  LP    +L  LT LD+S N+       ++  L  L+ L L  N L     +   LL
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---TLPPGLL 144

Query: 297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDL 356
                L  L L+ NNL+ +             +  GL                 L+ L L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAG----------LLNGLE---------------NLDTLLL 179

Query: 357 SANKI 361
             N +
Sbjct: 180 QENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 52/216 (24%), Positives = 82/216 (37%), Gaps = 29/216 (13%)

Query: 351 LELLDLSANK---IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDL 407
              ++        +P  +P         +   ++LS NL+  F   +++   T L  L+L
Sbjct: 12  HLEVNCDKRNLTALPPDLPK--------DTTILHLSENLLYTFSLATLMPY-TRLTQLNL 62

Query: 408 RSNKLQGPLPIPPESTIHYL----VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
              +L     +  + T+  L    +S+N L   L      L +L VLD+S N L+  LP 
Sbjct: 63  DRAELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP- 116

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
                   +    L+ + L  N L+   P  L     LE L L NN + ++    L  L 
Sbjct: 117 ----LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
            L  L+LQ N  +     P   F    L    L  N
Sbjct: 173 NLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 50/215 (23%), Positives = 68/215 (31%), Gaps = 46/215 (21%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
              T ++   N L       L    RLT L+L   +L   L    G+L  L  LDLS NQ
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRNTV 320
            Q  +P     L  L  LD+  N L+    +    L  L  L  L+L  N L  +     
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLT---SLPLGALRGLGELQELYLKGNELKTLPPG-- 142

Query: 321 NIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFV 380
                   +                    +LE L L+ N +     G L  +   NL  +
Sbjct: 143 --------LLTPTP---------------KLEKLSLANNNLTELPAGLLNGLE--NLDTL 177

Query: 381 NLSYNLITG-----FDRGSVVLLWTDLVTLDLRSN 410
            L  N +       F           L    L  N
Sbjct: 178 LLQENSLYTIPKGFFGSHL-------LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 57/286 (19%), Positives = 90/286 (31%), Gaps = 88/286 (30%)

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            +     ++     L   LP  +      T L LS N       +++    RL  L+L  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
             L+        L                                V   L          
Sbjct: 65  AELTK-------LQ-------------------------------VDGTLP--------- 77

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
                  L  LDLS N++   +P     +    L  +++S+N +T    G++  L  +L 
Sbjct: 78  ------VLGTLDLSHNQLQ-SLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGL-GELQ 127

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQ 463
            L L+ N+L+    +PP           LLT            L  L L++N L+  LP 
Sbjct: 128 ELYLKGNELKT---LPP----------GLLTP--------TPKLEKLSLANNNLT-ELP- 164

Query: 464 CLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
               + +     NL  + L  N L   IP+      +L F  L  N
Sbjct: 165 ----AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           LT + L   +L  K+      L  L  L+LS N L   +P     L  L  LD+S N L+
Sbjct: 57  LTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT 113

Query: 697 GEIP----RQLAELTSLAVFDVSDNNLTGQIPQG 726
             +P    R L EL  L    +  N L   +P G
Sbjct: 114 -SLPLGALRGLGELQEL---YLKGNELK-TLPPG 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 34/187 (18%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
             LLDLS N +      W     T NL  + LS+N +      + V +  +L  LDL SN
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSN 98

Query: 411 KLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470
            L     +                        +L +L VL L +N +  V          
Sbjct: 99  HLHT---LDEFL------------------FSDLQALEVLLLYNNHIVVVDR------NA 131

Query: 471 FKNATNLKMIDLSHNLLQGRIP----RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELK 526
           F++   L+ + LS N +  R P    +       L  LDL +N++  +  + L  LP   
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 527 VLMLQFN 533
              L  +
Sbjct: 191 KNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 9/170 (5%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
            L     +L   P  +P  + +  L  NNL   +       L +L  L LSHN L+ +  
Sbjct: 22  ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-- 79

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
               +S+ F    NL+ +DLS N L        ++   LE L L NN I  +  +    +
Sbjct: 80  ----SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 523 PELKVLMLQFNRFHG-EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQ 571
            +L+ L L  N+     +     G   PKL ++DLS N+   KLP    Q
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 25/181 (13%)

Query: 113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFS 172
            +   L L+ NN   S++ +E     + +        LT L  L LS N+ +   S +F 
Sbjct: 39  SYTALLDLSHNNL--SRLRAE----WTPTR-------LTNLHSLLLSHNHLNFISSEAFV 85

Query: 173 WIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL 231
                  L +L L++ N +     +   +L  L  +    N +     N   ++ +L  L
Sbjct: 86  ---PVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 232 SLKSNQLRGYLPSQI----GSLTQLTALDLSCNQFQGPVPSSISELKRL--EYLDLHSNN 285
            L  NQ+    P ++      L +L  LDLS N+ +    + + +L       L LH+N 
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 286 L 286
           L
Sbjct: 201 L 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 202 TQLTYINFDLNQLTGPIPNW-LANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSC 259
           +    ++   N L+     W    L  L  L L  N L  ++ S+    +  L  LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 260 NQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRN 318
           N          S+L+ LE L L++N++     ++      +  L  L+LS N +S     
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 319 TVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ 378
                                  +   N   +L LLDLS+NK+       L  +      
Sbjct: 155 L----------------------IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 379 FVNLSYN 385
            + L  N
Sbjct: 193 GLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
            + +L +L L+ N+     +   +     FS        L  L+ L L  N+       +
Sbjct: 86  PVPNLRYLDLSSNHL--HTLDEFL-----FSD-------LQALEVLLLYNNHIVVVDRNA 131

Query: 171 FSWIAKQTELSWLALANINLIGEFP----SWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226
           F       +L  L L+  N I  FP         L +L  ++   N+L       L  L 
Sbjct: 132 FE---DMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 227 RLT--ILSLKSNQLR 239
                 L L +N L 
Sbjct: 188 AWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 642 LSNNKLIGKIP--TSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGE 698
           LS+N  + ++    + + L  L+ L LS N+L   I S +   +  L  LDLS+N+L   
Sbjct: 46  LSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 699 IPRQ-LAELTSLAVFDVSDNNLTGQIPQG 726
           +     ++L +L V  + +N++   + + 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 106 SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS 165
                 L+ LE L L +N+     +        +F         + +L+ L LSQN  S 
Sbjct: 105 EFLFSDLQALEVLLLYNNHI--VVVDRN-----AFED-------MAQLQKLYLSQNQISR 150

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN 212
                     K  +L  L L++  L     + L  L         L+
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 637 LTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIP----SSLGNLTVLESLDLS 691
           L  ++L NN  I  +  +   ++  L  L LS  N +   P         L  L  LDLS
Sbjct: 114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLS 171

Query: 692 NNNLSGEIPRQLAELTSLAVFDVS-DNN 718
           +N L       L +L +     +   NN
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 61/318 (19%), Positives = 113/318 (35%), Gaps = 56/318 (17%)

Query: 248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307
           +  +    +L        V    +EL  ++ +  +++++     ++ +   L ++  LFL
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGI-QYLPNVTKLFL 75

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
           + N L+ I        L      L L    +K+ L  L D  +L+ L L  N I   I G
Sbjct: 76  NGNKLTDIKPLANLKNLGW----LFLDENKVKD-LSSLKDLKKLKSLSLEHNGI-SDING 129

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427
            L+++    L+ + L  N IT     +V+   T L TL L  N++               
Sbjct: 130 -LVHLP--QLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS-------------- 169

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL 487
                    + P L  L  L+ L LS N +S +               NL +++L     
Sbjct: 170 --------DIVP-LAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQEC 212

Query: 488 QGRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546
             +     +N  +   +   +  +      S  G   +  V       +H      +  F
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK------WHLPEFTNEVSF 266

Query: 547 VFPKLRIIDLSHNRFSGK 564
           +F +   I  +  RF G+
Sbjct: 267 IFYQPVTIGKAKARFHGR 284

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 60/275 (21%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
            I    S          +L   +                     +   L  +  +  + +
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVT----------------DAVTQNELNSIDQIIANNS 56

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW 221
           +       S   I     ++ L L   N + +    L NL  L ++  D N++   + + 
Sbjct: 57  DIK-----SVQGIQYLPNVTKLFLNG-NKLTDIKP-LANLKNLGWLFLDENKVKD-LSS- 107

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
           L +L +L  LSL+ N +     + +  L QL +L L  N+      + +S L +L+ L L
Sbjct: 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL 163

Query: 282 HSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEF 341
             N +S    I   L  L  L  L+LS N++S +                          
Sbjct: 164 EDNQIS---DIVP-LAGLTKLQNLYLSKNHISDL-------------------------- 193

Query: 342 LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN 376
              L     L++L+L + +   K      N+   N
Sbjct: 194 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 27/193 (13%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           +     L +L++L WL L +N             +   S     L +L KLK L L  N 
Sbjct: 80  LTDIKPLANLKNLGWLFLDENK------------VKDLSS----LKDLKKLKSLSLEHNG 123

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
            S       + +    +L  L L N N I +    L  LT+L  ++ + NQ++  +P  L
Sbjct: 124 IS-----DINGLVHLPQLESLYLGN-NKITDITV-LSRLTKLDTLSLEDNQISDIVP--L 174

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
           A L +L  L L  N +       +  L  L  L+L   +      +  S L     +   
Sbjct: 175 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 283 SNNLSGNVYIEEL 295
             +L     I + 
Sbjct: 233 DGSLVTPEIISDD 245

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 50/267 (18%), Positives = 85/267 (31%), Gaps = 73/267 (27%)

Query: 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327
            S          +L   +++  V   EL     S+  +  + +++  +            
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNEL----NSIDQIIANNSDIKSV------------ 61

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
                       + + +L     +  L L+ NK+   I   L N+   NL ++ L  N +
Sbjct: 62  ------------QGIQYLP---NVTKLFLNGNKL-TDIKP-LANLK--NLGWLFLDENKV 102

Query: 388 TGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSL 447
                 S+  L   L +L L  N +                        +   L +L  L
Sbjct: 103 KDLS--SLKDL-KKLKSLSLEHNGIS----------------------DING-LVHLPQL 136

Query: 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507
             L L +N ++ +              T L  + L  N +   I   LA  T L+ L L 
Sbjct: 137 ESLYLGNNKITDITV--------LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLS 186

Query: 508 NNQIADIFPSWLGTLPELKVLMLQFNR 534
            N I+D+    L  L  L VL L    
Sbjct: 187 KNHISDLRA--LAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
                     +L    ++  + Q            ++  I  +++ ++  +   +     
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--------NELNSIDQIIANNSDIK-SVQ-GIQYLPN 69

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           +  L L  N++ DI P  L  L  L  L L  N+    + +  +     KL+ + L HN 
Sbjct: 70  VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNG 123

Query: 561 FS 562
            S
Sbjct: 124 IS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + L +N  I  I   +  L  L  L L  N +     + L  LT L++L L +N +S
Sbjct: 114 LKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 169

Query: 697 GEIPRQLAELTSLAVFDVSDNNLT 720
            +I   LA LT L    +S N+++
Sbjct: 170 -DIV-PLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           +T + L+ NK +  I   ++ LK L  L L  N +     SSL +L  L+SL L +N +S
Sbjct: 70  VTKLFLNGNK-LTDI-KPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS 125

Query: 697 GEIPRQLAELTSLAVFDVSDNNLT 720
            +I   L  L  L    + +N +T
Sbjct: 126 -DIN-GLVHLPQLESLYLGNNKIT 147

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 21/176 (11%)

Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
            L  L  L L DN      +P+ I     F         L  L+ L ++ N   +     
Sbjct: 59  RLTKLRLLYLNDNKL--QTLPAGI-----FKE-------LKNLETLWVTDNKLQALPIGV 104

Query: 171 FSWIAKQTELSWLALANINLIGEFPSWL-MNLTQLTYINFDLNQLTGPIPNWL-ANLNRL 228
           F  +    EL  L   + N +   P  +  +LT+LTY++   N+L   +P  +   L  L
Sbjct: 105 FDQLVNLAEL-RL---DRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
             L L +NQL+         LT+L  L L  NQ +     +   L++L+ L L  N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 115 LEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWI 174
            + L L  N    S +PS      +F         LTKL+ L L+ N   +  +  F   
Sbjct: 39  TKKLDLQSNKL--SSLPS-----KAFHR-------LTKLRLLYLNDNKLQTLPAGIFK-- 82

Query: 175 AKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233
            +   L  L + + N +   P  +   L  L  +  D NQL    P    +L +LT LSL
Sbjct: 83  -ELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 234 KSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYI 292
             N+L+  LP  +   LT L  L L  NQ +     +  +L  L+ L L +N L      
Sbjct: 141 GYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR--VP 197

Query: 293 EELLPKLKSLIVLFLSAN 310
           E     L+ L +L L  N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 47/212 (22%), Positives = 77/212 (36%), Gaps = 36/212 (16%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
                ++   N+L+         L +L +L L  N+L+  LP+ I   L  L  L ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 261 QFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLSANNLSLITRN 318
           + Q  +P  +  +L  L  L L  N L     +   +   L  L  L L  N L  + + 
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 319 TVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQ 378
                     VF  L                 L+ L L  N++  ++P    +  T  L+
Sbjct: 152 ----------VFDKLT---------------SLKELRLYNNQLK-RVPEGAFDKLT-ELK 184

Query: 379 FVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            + L  N +     G+   L   L  L L+ N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSL-EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            + LDL +NK+          +T   L+ + L+ N +     G    L  +L TL +  N
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLT--KLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDN 95

Query: 411 KLQ----GPLPIPPESTIHYLVSNNLLTGKLAPWLC-NLNSLRVLDLSHNFLSGVLPQCL 465
           KLQ    G            L   N L   L P +  +L  L  L L +N L   LP   
Sbjct: 96  KLQALPIGVFDQLVNLAELRL-DRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLP--- 149

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSL-ANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
               +F   T+LK + L +N L+ R+P       T L+ L L NNQ+  +      +L +
Sbjct: 150 --KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206

Query: 525 LKVLMLQFN 533
           LK+L LQ N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 53/241 (21%), Positives = 81/241 (33%), Gaps = 67/241 (27%)

Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIV 304
                LDL  N+       +   L +L  L L+ N L         LP     +LK+L  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-------LPAGIFKELKNLET 89

Query: 305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK 364
           L+++ N L  +             VF  L +               L  L L  N++   
Sbjct: 90  LWVTDNKLQALPIG----------VFDQLVN---------------LAELRLDRNQL-KS 123

Query: 365 IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTI 424
           +P  + +  T  L +++L YN +    +G    L T L  L L +N+L+           
Sbjct: 124 LPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQLKR---------- 171

Query: 425 HYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
              V               L  L+ L L +N L  V          F +   LKM+ L  
Sbjct: 172 ---VPEGAFDK--------LTELKTLKLDNNQLKRVPEG------AFDSLEKLKMLQLQE 214

Query: 485 N 485
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 46/222 (20%)

Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
            + K +DL  N L     ++    T L  L L +N++  +       L  L+ L +  N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 535 FHGEIGEPDTGFVFP-KLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQ 593
               +  P   F     L  + L  N+    LP + F         + ++L Y+      
Sbjct: 97  LQ-AL--PIGVFDQLVNLAELRLDRNQLK-SLPPRVF--------DSLTKLTYL------ 138

Query: 594 SLNY-ILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP 652
           SL Y  L S    +FD                       K+++ L  + L NN+L  ++P
Sbjct: 139 SLGYNELQSLPKGVFD-----------------------KLTS-LKELRLYNNQL-KRVP 173

Query: 653 TSI-SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN 693
                +L  L  L L  N L      +  +L  L+ L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 55/350 (15%), Positives = 102/350 (29%), Gaps = 67/350 (19%)

Query: 198 LMNLTQLTYINFDLNQLTG----PIPNWLANLNRLTILSLKSNQL--RG--YLPSQIGSL 249
           +   + +   +  L+ +T      +   L   + +  + L  N +      +L   I S 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 250 TQLTALDLSCNQFQGPVP----------SSISELKRLEYLDLHSNNLS--GNVYIEELLP 297
             L   + S                    ++ +  +L  + L  N         + + L 
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 298 KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLS 357
           K   L  L+L  N L                +   L    + +          L  +   
Sbjct: 120 KHTPLEHLYLHNNGLGPQA---------GAKIARALQELAVNKKAKNAP---PLRSIICG 167

Query: 358 ANKI---PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL------WTDLVTLDLR 408
            N++     K            L  V +  N I     G   LL        +L  LDL+
Sbjct: 168 RNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIR--PEGIEHLLLEGLAYCQELKVLDLQ 224

Query: 409 SNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS 468
            N            +             LA  L +  +LR L L+   LS      + ++
Sbjct: 225 DNT------FTHLGSSA-----------LAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 469 KIFKNATNLKMIDLSHNLLQGRIPRSLA-----NCTMLEFLDLGNNQIAD 513
                   L+ + L +N ++    R+L          L FL+L  N+ ++
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 51/352 (14%), Positives = 99/352 (28%), Gaps = 82/352 (23%)

Query: 252 LTALDLSCNQFQG----PVPSSISELKRLEYLDLHSNNLS--GNVYIEELLPKLKSLIVL 305
           +    L  +         V + + E   ++ + L  N +      ++ E +   K L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 306 FLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKI 365
             S      +                      L+  L  L    +L  + LS N      
Sbjct: 66  EFSDIFTGRVKDEIPE---------------ALRLLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 366 PGWLLNVTTGN--LQFVNLSYNLIT------------GFDRGSVVLLWTDLVTLDLRSNK 411
              L++  + +  L+ + L  N +                          L ++    N+
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS--GVLPQCLSNSK 469
           L+        S               A    +   L  + +  N +   G+        +
Sbjct: 171 LE------NGSMKE-----------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLL---LE 210

Query: 470 IFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFLDLGNNQIADIFPSWL------ 519
                  LK++DL  N         +  +L +   L  L L +  ++    + +      
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 520 GTLPELKVLMLQFNRFHGEIGEPDTGFV---------FPKLRIIDLSHNRFS 562
                L+ L LQ+N    EI                  P L  ++L+ NRFS
Sbjct: 271 LENIGLQTLRLQYN----EIE--LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 60/372 (16%), Positives = 100/372 (26%), Gaps = 87/372 (23%)

Query: 146 SLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLT 205
            L     +K + LS N   +  +                L+           + +   L 
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAAR--------------WLSEN---------IASKKDLE 63

Query: 206 YINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG- 264
              F               L  L   +L                 +L  + LS N F   
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLL-QALLKC-------------PKLHTVRLSDNAFGPT 109

Query: 265 ---PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN 321
              P+   +S+   LE+L LH+N L G     ++   L+ L V   + N   L +     
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRS----- 163

Query: 322 IRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLSANKI----PGKIPGWLLNV 372
                    +      L     KE+         L  + +  N I       +    L  
Sbjct: 164 ---------IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 373 TTGNLQFVNLSYNLITGFDRGSVVL-----LWTDLVTLDLRSNKLQGP--------LPIP 419
               L+ ++L  N  T    GS  L      W +L  L L    L               
Sbjct: 215 CQ-ELKVLDLQDNTFT--HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 420 PESTIHYL-VSNNLLTGKLAPWLC-----NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKN 473
               +  L +  N +       L       +  L  L+L+ N  S          ++F  
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331

Query: 474 ATNLKMIDLSHN 485
               ++ +L   
Sbjct: 332 RGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 55/377 (14%), Positives = 102/377 (27%), Gaps = 99/377 (26%)

Query: 377 LQFVNLSYNLITGFDRGSVVLLW-----TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNN 431
           ++  +L  + IT        +         +  + L  N +        E+         
Sbjct: 6   IEGKSLKLDAIT--TEDEKSVFAVLLEDDSVKEIVLSGNTIG------TEAARW------ 51

Query: 432 LLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF----KNATNLKMIDLSHNLL 487
                L+  + +   L + + S  F   V  +     ++          L  + LS N  
Sbjct: 52  -----LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

Query: 488 QGR----IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPD 543
                  +   L+  T LE L L NN +     + +          LQ      E+    
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------ALQ------ELAVNK 153

Query: 544 TGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSS 603
                P LR I    NR                           ++   +       S  
Sbjct: 154 KAKNAPPLRSIICGRNRL--------------------------ENGSMKEWAKTFQSHR 187

Query: 604 AYIFDYSLQYIYAYSITMVNKGIEMNYG---KVSNFLTGIILSNNKLIGK-----IPTSI 655
                  L  +      +  +GIE            L  + L +N          +  ++
Sbjct: 188 ------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIAL 240

Query: 656 SELKGLNCLNLSGNNL-------LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAE--- 705
                L  L L+   L       +    S L N+  L++L L  N +  +  R L     
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVID 299

Query: 706 --LTSLAVFDVSDNNLT 720
             +  L   +++ N  +
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 45/225 (20%), Positives = 67/225 (29%), Gaps = 41/225 (18%)

Query: 106 SSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSS 165
             +L     L  + L+DN F     P+    L  F      L   T L+ L L  N    
Sbjct: 87  LQALLKCPKLHTVRLSDNAFG----PTAQEPLIDF------LSKHTPLEHLYLHNNGL-G 135

Query: 166 PHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP----IPNW 221
           P + +              +A             N   L  I    N+L           
Sbjct: 136 PQAGA-------------KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 222 LANLNRLTILSLKSNQLR-----GYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE---- 272
             +   L  + +  N +R       L   +    +L  LDL  N F     S+++     
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 273 LKRLEYLDLHSNNLS--GNVYIEELLPKL--KSLIVLFLSANNLS 313
              L  L L+   LS  G   + +   KL    L  L L  N + 
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 41/311 (13%), Positives = 88/311 (28%), Gaps = 64/311 (20%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTML 501
           S+    L  + ++    + +    +     ++K I LS N +       +  ++A+   L
Sbjct: 5   SIEGKSLKLDAITTEDEKSVF--AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 502 EFLDLGNNQIADIFP----------SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK- 550
           E  +  +     +              L   P+L  + L  N F G   +        K 
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKH 121

Query: 551 --LRIIDLSHNRFSGK----LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSA 604
             L  + L +N    +    +     +     K  N   L+ +        N +   S  
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII----CGRNRLENGSMK 177

Query: 605 YIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKL-----IGKIPTSISELK 659
                      A +             +    L  + +  N +        +   ++  +
Sbjct: 178 EW---------AKTF------------QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 660 GLNCLNLSGNNL----LGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL------TSL 709
            L  L+L  N         +  +L +   L  L L++  LS      + +         L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 710 AVFDVSDNNLT 720
               +  N + 
Sbjct: 277 QTLRLQYNEIE 287

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 34/212 (16%)

Query: 102 SINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQN 161
            IN       L +    +L   +                   + S   L+ ++      +
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVT----------------DLVSQKELSGVQNFNGDNS 51

Query: 162 NFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW 221
           N       S + +   T L  L L++ N I +    L +LT+L  ++ + N+L   +   
Sbjct: 52  NIQ-----SLAGMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLKN-LNG- 102

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
           + +   L+ L L +N+LR      +  L  L  L +  N+ +      +  L +LE LDL
Sbjct: 103 IPSAC-LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDL 157

Query: 282 HSNNLSGNVYIEELLPKLKSLIVLFLSANNLS 313
           H N ++        L +LK +  + L+     
Sbjct: 158 HGNEIT---NTGG-LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 38/230 (16%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL 147
           + +K NL       S+    S   L  ++  +  ++            N+ S +G    +
Sbjct: 20  NAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNS------------NIQSLAG----M 59

Query: 148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYI 207
              T LK L LS N  S       S +   T+L  L++   N +       +    L+ +
Sbjct: 60  QFFTNLKELHLSHNQIS-----DLSPLKDLTKLEELSVNR-NRLKNLNG--IPSACLSRL 111

Query: 208 NFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP 267
             D N+L       L +L  L ILS+++N+L+      +G L++L  LDL  N+      
Sbjct: 112 FLDNNELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT--NT 165

Query: 268 SSISELKRLEYLDLHSNNLS--GNVYIEEL--LPKLKSLIVLFLSANNLS 313
             ++ LK++ ++DL           Y  EL     +K     ++S   +S
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 18/174 (10%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
           QV     L       L + + +           + + +      N + I      +   T
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTD-----LVSQKELSGVQNFNGDN-SNIQSLAG-MQFFT 63

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            L  ++   NQ++  +   L +L +L  LS+  N+L+            L+ L L  N+ 
Sbjct: 64  NLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNEL 118

Query: 263 QGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT 316
           +     S+  LK LE L + +N L     I   L  L  L VL L  N ++   
Sbjct: 119 RDT--DSLIHLKNLEILSIRNNKLK---SIVM-LGFLSKLEVLDLHGNEITNTG 166

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 23/186 (12%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLT 434
           N    NL    +T  D  S   L + +   +  ++ +Q    +   + +  L +S+N ++
Sbjct: 20  NAVKQNLGKQSVT--DLVSQKEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS 76

Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS 494
             L+P L +L  L  L ++ N L  +    + +         L  + L +N L+     S
Sbjct: 77  -DLSP-LKDLTKLEELSVNRNRLKNLNG--IPS-------ACLSRLFLDNNELRD--TDS 123

Query: 495 LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRII 554
           L +   LE L + NN++  I    LG L +L+VL L  N     I          K+  I
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWI 177

Query: 555 DLSHNR 560
           DL+  +
Sbjct: 178 DLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 36/233 (15%), Positives = 82/233 (35%), Gaps = 46/233 (19%)

Query: 296 LPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLD 355
            P L + +   L   +++ +        +QN        + N++  L  +     L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQN----FNGDNSNIQS-LAGMQFFTNLKELH 69

Query: 356 LSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGP 415
           LS N+I   +   L ++T   L+ ++++ N +   +     +    L  L L +N+L+  
Sbjct: 70  LSHNQI-SDLSP-LKDLT--KLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDT 121

Query: 416 LPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNAT 475
                                    L +L +L +L + +N         L +  +    +
Sbjct: 122 DS-----------------------LIHLKNLEILSIRNN--------KLKSIVMLGFLS 150

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVL 528
            L+++DL  N +       L     + ++DL   +  +    +   L     +
Sbjct: 151 KLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 38/293 (12%), Positives = 78/293 (26%), Gaps = 74/293 (25%)

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL 281
              L      +L    +   +      L+ +   +   +  Q    + +     L+ L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 282 HSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEF 341
             N +S    +  L   L  L  L ++ N L  +                G+ S  L   
Sbjct: 71  SHNQISD---LSPL-KDLTKLEELSVNRNRLKNLN---------------GIPSACLSR- 110

Query: 342 LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD 401
                       L L  N++       L+++   NL+ +++  N +       ++   + 
Sbjct: 111 ------------LFLDNNELR-DTDS-LIHLK--NLEILSIRNNKLKSI---VMLGFLSK 151

Query: 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
           L  LDL  N++                            L  L  +  +DL+        
Sbjct: 152 LEVLDLHGNEITNTGG-----------------------LTRLKKVNWIDLTGQKCVNEP 188

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI 514
            +      I     +     +S        P  ++N        +        
Sbjct: 189 VKYQPELYITNTVKDPDGRWIS--------PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLN--CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNN 694
           L  + ++ N+L      +++ +       L L  N L      SL +L  LE L + NN 
Sbjct: 87  LEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNK 139

Query: 695 LSGEIPRQLAELTSLAVFDVSDNNLT 720
           L   I   L  L+ L V D+  N +T
Sbjct: 140 LK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 50/193 (25%)

Query: 103 INSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN 162
           I+  S L  L  LE LS+  N          + NL+              L  L L  N 
Sbjct: 75  ISDLSPLKDLTKLEELSVNRNR---------LKNLNGIP--------SACLSRLFLDNNE 117

Query: 163 FSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWL 222
                S                             L++L  L  ++   N+L   I   L
Sbjct: 118 LRDTDS-----------------------------LIHLKNLEILSIRNNKLKS-IVM-L 146

Query: 223 ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH 282
             L++L +L L  N++       +  L ++  +DL+  +          EL     +   
Sbjct: 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 283 SNNLSGNVYIEEL 295
                   YI   
Sbjct: 205 DGRWISPYYISNG 217

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 56/379 (14%), Positives = 104/379 (27%), Gaps = 72/379 (18%)

Query: 155 CLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL 214
           CL +  +   +  S   + +    E               PS +           D    
Sbjct: 256 CLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQ 315

Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
                 W  + ++   + LK             +  QL   +LS  +    + S +   K
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPEC--WCRDSATDEQLFRCELSVEKST-VLQSELESCK 372

Query: 275 RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLA 334
            L+ L+  +        +  ++  +++L  L      L   +     +          L 
Sbjct: 373 ELQELEPENK-----WCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLDDLR 426

Query: 335 SCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGS 394
           S  L E      +   + +L L+   +   +   L  +    +  ++LS+N +       
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLL--LVTHLDLSHNRLR------ 476

Query: 395 VVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSH 454
                                                     L P L  L  L VL  S 
Sbjct: 477 -----------------------------------------ALPPALAALRCLEVLQASD 495

Query: 455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIAD 513
           N L  V            N   L+ + L +N LQ     + L +C  L  L+L  N +  
Sbjct: 496 NALENVDG--------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

Query: 514 IFPSW---LGTLPELKVLM 529
                      LP +  ++
Sbjct: 548 EEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPR 701
           L++  L   +   + +L  +  L+LS +N L  +P +L  L  LE L  S+N L   +  
Sbjct: 448 LAHKDLT-VLC-HLEQLLLVTHLDLS-HNRLRALPPALAALRCLEVLQASDNALE-NVD- 502

Query: 702 QLAELTSLAVFDVSDNNLTGQIPQGKQFNTFEN---SSFEGNPGLCGKPLSRN 751
            +A L  L    + +N L  Q    +   +       + +GN  LC +   + 
Sbjct: 503 GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQE 553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 59/165 (35%)

Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ 203
           +  L  L  +  L+LS N   +                                      
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-------------------------------------- 477

Query: 204 LTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263
                         +P  LA L  L +L    N L   +   + +L +L  L L  N+ Q
Sbjct: 478 --------------LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

Query: 264 G-PVPSSISELKRLEYLDLHSNNLSGNV----YIEELLPKLKSLI 303
                  +    RL  L+L  N+L         + E+LP + S++
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWL-MNLTQLTYINFDLNQL 214
           + L QN        +FS      +L  + L+N N I E        L  L  +    N++
Sbjct: 37  IRLEQNTIKVIPPGAFS---PYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELK 274
           T    +    L  L +L L +N++          L  L  L L  N+ Q     + S L+
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 275 RLEYLDLHSN 284
            ++ + L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
             +T I  + N +    P   +   +L  + L +NQ+   L       L  L +L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIVLFLSANNLSLI 315
           +      S    L  L+ L L++N ++        L       L +L +L L  N L  I
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINC-------LRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 316 TRNTVN 321
            + T +
Sbjct: 144 AKGTFS 149

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 38/174 (21%)

Query: 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPP 420
           IP  +P      T   +    L  N I     G+       L  +DL +N++     + P
Sbjct: 26  IPTNLP-----ETITEI---RLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISE---LAP 73

Query: 421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMI 480
                     +   G        L SL  L L  N ++  LP       +F+   +L+++
Sbjct: 74  ----------DAFQG--------LRSLNSLVLYGNKIT-ELP-----KSLFEGLFSLQLL 109

Query: 481 DLSHNLLQGRIPR-SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
            L+ N +   +   +  +   L  L L +N++  I       L  ++ + L  N
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 19/146 (13%)

Query: 118 LSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQ 177
           + L  N      IP       +FS          KL+ ++LS N  S     +F      
Sbjct: 37  IRLEQNTI--KVIPP-----GAFSP-------YKKLRRIDLSNNQISELAPDAFQ---GL 79

Query: 178 TELSWLALANINLIGEFPSWLM-NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
             L+ L L   N I E P  L   L  L  +  + N++     +   +L+ L +LSL  N
Sbjct: 80  RSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138

Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQF 262
           +L+         L  +  + L+ N F
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 30/156 (19%)

Query: 354 LDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413
           + L  N I    PG         L+ ++LS N I+     +   L   L +L L  NK+ 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKIT 93

Query: 414 GPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKN 473
               +P                        L SL++L L+ N ++ +          F++
Sbjct: 94  E---LPKSL------------------FEGLFSLQLLLLNANKINCLRVD------AFQD 126

Query: 474 ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
             NL ++ L  N LQ     + +    ++ + L  N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 40/166 (24%)

Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIV 304
             +T + L  N  +   P + S  K+L  +DL +N +S        L       L+SL  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------LAPDAFQGLRSLNS 84

Query: 305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK 364
           L L  N ++ + ++          +F GL                 L+LL L+ANKI   
Sbjct: 85  LVLYGNKITELPKS----------LFEGLF---------------SLQLLLLNANKINCL 119

Query: 365 IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
                 ++   NL  ++L  N +    +G+   L   + T+ L  N
Sbjct: 120 RVDAFQDLH--NLNLLSLYDNKLQTIAKGTFSPL-RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGEIP 700
           L  N +    P + S  K L  ++LS NN +  +   +   L  L SL L  N ++    
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97

Query: 701 RQLAELTSLAVFDVSDNNLTGQIPQG 726
                L SL +  ++ N +   +   
Sbjct: 98  SLFEGLFSLQLLLLNANKIN-CLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
             +  I L  N ++   P + +    L  +DL NNQI+++ P     L  L  L+L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 535 FHGEIGEPDTGFVF---PKLRIIDLSHNR 560
               I E     +F     L+++ L+ N+
Sbjct: 92  ----ITELPKS-LFEGLFSLQLLLLNANK 115

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 51/320 (15%), Positives = 92/320 (28%), Gaps = 65/320 (20%)

Query: 200 NLTQLTYINFDLNQLTGPIP-NWLANLNRLTILSL-KSNQLRGYLPSQIGSLTQLTALDL 257
               L  I    N +   I  +  +NL +L  + + K+N L    P    +L  L  L +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITR 317
           S    +           +   LD+  N                          N+  I R
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDN-------------------------INIHTIER 146

Query: 318 NTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL 377
           N+          F+GL+               +  +L L+ N I  +I     N  T   
Sbjct: 147 NS----------FVGLSF--------------ESVILWLNKNGIQ-EIHNSAFN-GTQLD 180

Query: 378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPE--STIHYLVSNNLLTG 435
           +      N +            +  V LD+   ++     +P      +  L + +    
Sbjct: 181 ELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIH---SLPSYGLENLKKLRARSTYNL 236

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
           K  P L  L +L    L++         C + +   +  + L  I     L Q     + 
Sbjct: 237 KKLPTLEKLVALMEASLTYPS------HCCAFANWRRQISELHPICNKSILRQEVDYMTQ 290

Query: 496 ANCTMLEFLDLGNNQIADIF 515
           A        +   +  +  F
Sbjct: 291 ARGQRSSLAEDNESSYSRGF 310

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 47/304 (15%), Positives = 85/304 (27%), Gaps = 63/304 (20%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDL-HSNN 285
              L     +LR            L  +++S N     + + + S L +L  + +  +NN
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 286 LSGNVYIE-ELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF 344
           L    YI  E    L +L  L +S   +  +               +             
Sbjct: 92  LL---YINPEAFQNLPNLQYLLISNTGIKHL----------PDVHKIHSL---------- 128

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
                Q  LLD+  N     I        +     + L+ N I      +          
Sbjct: 129 -----QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDEL 182

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
               +N L+    +P +                       +   +LD+S   +   LP  
Sbjct: 183 NLSDNNNLEE---LPNDV------------------FHGASGPVILDISRTRIH-SLP-- 218

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE 524
              S   +N   L+     +     ++P +L     L    L        F +W   + E
Sbjct: 219 ---SYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYPSHCCAFANWRRQISE 271

Query: 525 LKVL 528
           L  +
Sbjct: 272 LHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 8e-09
 Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 25/211 (11%)

Query: 105 SSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQ-NNF 163
              +      LE + ++ N+        E++    FS       NL KL  + + + NN 
Sbjct: 46  QKGAFSGFGDLEKIEISQNDV------LEVIEADVFS-------NLPKLHEIRIEKANNL 92

Query: 164 SSPHSASFSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINF-DLNQLTGPIPNW 221
              +  +F        L +L ++N   I   P    ++  Q   ++  D   +     N 
Sbjct: 93  LYINPEAFQ---NLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 222 LANL-NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS-CNQFQGPVPSSISELKRLEYL 279
              L     IL L  N ++  + +   + TQL  L+LS  N  +               L
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 280 DLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
           D+    +         L  LK L        
Sbjct: 208 DISRTRIH--SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 24/220 (10%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF-DRGSVVLLWTDLVTLDL-R 408
              L     K+     G        +L+ + +S N +    +      L   L  + + +
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEK 88

Query: 409 SNKLQGPLPIPPE-----STIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
           +N L     I PE       + YL +SN  +         +     +LD+  N     + 
Sbjct: 89  ANNLLY---INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 463 QCLSNSKIFKN-ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGT 521
                   F   +    ++ L+ N +Q     +     + E     NN + ++       
Sbjct: 146 -----RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 522 LPELKVLMLQFNRFHGEIGEPDTGFV-FPKLRIIDLSHNR 560
                +L +   R H  +  P  G     KLR     + +
Sbjct: 201 ASGPVILDISRTRIH-SL--PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 637 LTGIILSNNKLIGKIPTSI-SELKGLNCLNLSGNNLLGHIPSS-LGNLTVLESLDLSNNN 694
           L  I +S N ++  I   + S L  L+ + +   N L +I      NL  L+ L +SN  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 695 LSGEIPRQL-AELTSLAVFDVSDNNLTGQIPQG 726
           +   +P           + D+ DN     I + 
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 48/255 (18%)

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           + ++     + +   IP  L        L     ++  I         +L+ + +  N  
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 536 HGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595
              I E D     PKL  I +        +  + FQ        N   L+Y+       +
Sbjct: 67  LEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQ--------NLPNLQYL------LI 111

Query: 596 NY-ILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPT- 653
           +   +         +SLQ                           + + +N  I  I   
Sbjct: 112 SNTGIKHLPDVHKIHSLQ------------------------KVLLDIQDNINIHTIERN 147

Query: 654 SISELKG-LNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAV 711
           S   L      L L+ N +   I +S  N T L+ L+LS+NN   E+P       +   +
Sbjct: 148 SFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 712 FDVSDNNLTGQIPQG 726
            D+S   +   +P  
Sbjct: 207 LDISRTRIH-SLPSY 220

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLS 258
            L QL  INF  N++T          + +  + L SN+L   +  ++   L  L  L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPK-----LKSLIVLFLSAN 310
            N+       S   L  +  L L+ N ++        +       L SL  L L AN
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITT-------VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
           T+D  + KL   P  IP  +    L +N     +       L  LR ++ S+N ++ +  
Sbjct: 15  TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                   F+ A+ +  I L+ N L+    +       L+ L L +N+I  +       L
Sbjct: 75  ------GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128

Query: 523 PELKVLMLQFNRFH 536
             +++L L  N+  
Sbjct: 129 SSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 35/173 (20%)

Query: 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPP 420
           IP  IP       T  L    L+ N  T  +   +      L  ++  +NK+     I  
Sbjct: 26  IPEHIP-----QYTAEL---RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEE 74

Query: 421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMI 480
                         G         + +  + L+ N L   +       K+FK   +LK +
Sbjct: 75  ----------GAFEG--------ASGVNEILLTSNRLEN-VQ-----HKMFKGLESLKTL 110

Query: 481 DLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
            L  N +      S    + +  L L +NQI  + P    TL  L  L L  N
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 202 TQLTYINFDLNQLTGPIPN-WLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN 260
                +  + N+ T          L +L  ++  +N++           + +  + L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIVLFLSANNLSLI 315
           + +         L+ L+ L L SN ++        +       L S+ +L L  N ++ +
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITC-------VGNDSFIGLSSVRLLSLYDNQITTV 144

Query: 316 TRNT 319
               
Sbjct: 145 APGA 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 27/136 (19%)

Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
            L +L+ +  S N  +     +F                              + +  I 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFE---------------------------GASGVNEIL 87

Query: 209 FDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS 268
              N+L          L  L  L L+SN++          L+ +  L L  NQ     P 
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 269 SISELKRLEYLDLHSN 284
           +   L  L  L+L +N
Sbjct: 148 AFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 250 TQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFL 307
                L L+ N+F     + I  +L +L  ++  +N ++    IEE        +  + L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILL 88

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
           ++N L  +             +F GL                 L+ L L +N+I      
Sbjct: 89  TSNRLENVQHK----------MFKGLE---------------SLKTLMLRSNRITCVGND 123

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
             + ++  +++ ++L  N IT    G+   L   L TL+L +N
Sbjct: 124 SFIGLS--SVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLAN 163

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 37/197 (18%)

Query: 98  CIYGSINSSSSLFHLRHLEWLSLADNNFNYSK---IPSEIMNLSSFSGQVPSLG---NLT 151
               S+  + +   L  ++ +   +++    +       +  L+    ++  +     LT
Sbjct: 26  LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELT 85

Query: 152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDL 211
            L  L L+ N   S  +  F                             LT L  +    
Sbjct: 86  NLTYLILTGNQLQSLPNGVFD---------------------------KLTNLKELVLVE 118

Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSI 270
           NQL          L  LT L+L  NQL+  LP  +   LT LT LDLS NQ Q  +P  +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176

Query: 271 -SELKRLEYLDLHSNNL 286
             +L +L+ L L+ N L
Sbjct: 177 FDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 51/225 (22%), Positives = 78/225 (34%), Gaps = 62/225 (27%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
            +    N     +T  +      LN +  +   ++ ++  +   I  L  +  L L  N+
Sbjct: 19  AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNK 74

Query: 262 FQGPVPSSIS---ELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIVLFLSANNLS 313
                   IS   EL  L YL L  N L         LP     KL +L  L L  N L 
Sbjct: 75  LH-----DISALKELTNLTYLILTGNQLQS-------LPNGVFDKLTNLKELVLVENQLQ 122

Query: 314 LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVT 373
            +             VF  L                 L  L+L+ N++   +P  + +  
Sbjct: 123 SLPDG----------VFDKLT---------------NLTYLNLAHNQLQ-SLPKGVFDKL 156

Query: 374 TGNLQFVNLSYNLITG-----FDRGSVVLLWTDLVTLDLRSNKLQ 413
           T NL  ++LSYN +       FD+       T L  L L  N+L+
Sbjct: 157 T-NLTELDLSYNQLQSLPEGVFDK------LTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 31/177 (17%)

Query: 343 DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG---FDRGSVVLLW 399
           + LN  DQ+   +     + G I          N++++ L  N +               
Sbjct: 38  NELNSIDQIIANNSDIKSVQG-IQ------YLPNVRYLALGGNKLHDISALKE------L 84

Query: 400 TDLVTLDLRSNKLQ----GPLPIPPESTIHYLVSNNLLTGKLAPWLCN-LNSLRVLDLSH 454
           T+L  L L  N+LQ    G            LV N L    L   + + L +L  L+L+H
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLAH 142

Query: 455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL-ANCTMLEFLDLGNNQ 510
           N L   LP       +F   TNL  +DLS+N LQ  +P  +    T L+ L L  NQ
Sbjct: 143 NQLQ-SLP-----KGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 18/158 (11%)

Query: 380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL-VSNNLLTGKLA 438
            NL    +T             +  +   ++ ++    I     + YL +  N L   + 
Sbjct: 24  ANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DI- 78

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ---GRIPRSL 495
             L  L +L  L L+ N L   LP     + +F   TNLK + L  N LQ     +   L
Sbjct: 79  SALKELTNLTYLILTGNQLQS-LP-----NGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
            N   L +L+L +NQ+  +       L  L  L L +N
Sbjct: 133 TN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLS 258
           +L  L  +    NQL         +L +LT+L L +NQL   LPS +   L  L  L + 
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC 120

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
           CN+    +P  I  L  L +L L  N L           +L SL   +L  N
Sbjct: 121 CNKLTE-LPRGIERLTHLTHLALDQNQLKS--IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LT 202
           VP+ G  T  + L L  N  +      F  +     L  L L + N +G  P  + + LT
Sbjct: 34  VPA-GIPTNAQILYLHDNQITKLEPGVFDSL---INLKELYLGS-NQLGALPVGVFDSLT 88

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
           QLT ++   NQLT         L  L  L +  N+L   LP  I  LT LT L L  NQ 
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

Query: 263 QGPVPSSISELKRLEYLDLHSN 284
           +     +   L  L +  L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 5/117 (4%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
           T    +    NQ+T   P    +L  L  L L SNQL   LP  +  SLTQLT LDL  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTN 98

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITR 317
           Q      +    L  L+ L +  N L+    +   + +L  L  L L  N L  I  
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLTE---LPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 39/174 (22%)

Query: 361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQG-PLPIP 419
           +P  IP          L    L  N IT  + G    L  +L  L L SN+L   P+ + 
Sbjct: 34  VPAGIP-----TNAQILY---LHDNQITKLEPGVFDSL-INLKELYLGSNQLGALPVGVF 84

Query: 420 PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM 479
                                   L  L VLDL  N L+ VLP     S +F    +LK 
Sbjct: 85  DS----------------------LTQLTVLDLGTNQLT-VLP-----SAVFDRLVHLKE 116

Query: 480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN 533
           + +  N L   +PR +   T L  L L  NQ+  I       L  L    L  N
Sbjct: 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 56/302 (18%), Positives = 106/302 (35%), Gaps = 63/302 (20%)

Query: 250 TQLTALDLSCNQFQGPVPSSISEL-----KRLEYLDLHSNNLS--GNVYIEELLPKLK-S 301
             +T+LDLS N         + +        +  L+L  N+L    +  + ++L  +  +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 302 LIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKI 361
           +  L LS N LS  +         +  +   LA+               + +LDL  N  
Sbjct: 82  VTSLNLSGNFLSYKS---------SDELVKTLAAIPFT-----------ITVLDLGWNDF 121

Query: 362 PGK----IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVL------LWTDLVTLDLRSNK 411
             K          N+   ++  +NL  N +    + S  L      +  ++ +L+LR N 
Sbjct: 122 SSKSSSEFKQAFSNLPA-SITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 412 LQGP--------LPIPPESTIHYLVSNNLLTGKLAPWLC-----NLNSLRVLDLSHNFLS 458
           L           L   P S     +S NLL  K    L        N +  L+L  N L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLLQG-------RIPRSLANCTMLEFLDLGNNQI 511
           G   + L    +  +  +L+ + L +++++         +  +  N   +  +D    +I
Sbjct: 239 GPSLENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 512 AD 513
             
Sbjct: 297 HP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 65/360 (18%)

Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLA-----NLNRLTILSLKSNQLRGYLPSQIGSL--- 249
                 +T ++  LN L       L          +T L+L  N L      ++  +   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 250 --TQLTALDLSCNQFQGPVPSSISEL-----KRLEYLDLHSNNLS--GNVYIEELLPKL- 299
               +T+L+LS N         + +        +  LDL  N+ S   +   ++    L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 300 KSLIVLFLSANNLS-----LITR--NTVNIRLQNKFVFLGLASCNL-----KEFLDFL-N 346
            S+  L L  N+L       + +    +   + +    L L   NL      E   FL +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNS----LNLRGNNLASKNCAELAKFLAS 193

Query: 347 DQDQLELLDLSANKI---PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVL-----L 398
               +  LDLSAN +         ++ +    ++  +NL  N +         L      
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH--GPSLENLKLLKDS 251

Query: 399 WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
              L T+ L  + ++       ++              L     N+  + ++D +   + 
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKA--------------LGAAFPNIQKIILVDKNGKEIH 297

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLL-----QGRIPRSLANCTMLEFLDLGNNQIAD 513
                 +SN  I + +    +  L +  L            L     L         + +
Sbjct: 298 PSHSIPISNL-IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 54/309 (17%), Positives = 103/309 (33%), Gaps = 59/309 (19%)

Query: 279 LDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS---------LITRNTVNIRLQNKFV 329
           ++       G+  +EE       +  L LS NNL                 ++       
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVT------ 54

Query: 330 FLGLASCNL-----KEFLDFLNDQD-QLELLDLSANKIPGKIPGWL---LNVTTGNLQFV 380
            L L+  +L      E +  L      +  L+LS N +  K    L   L      +  +
Sbjct: 55  SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVL 114

Query: 381 NLSYNLITGFDRGSVVL------LWTDLVTLDLRSNKLQGP--------LPIPPESTIHY 426
           +L +N  +   + S         L   + +L+LR N L           L   P + ++ 
Sbjct: 115 DLGWNDFS--SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNS 171

Query: 427 L-VSNNLLTGK----LAPWLCNLN-SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMI 480
           L +  N L  K    LA +L ++  S+  LDLS N L       L+         ++  +
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA-YIFSSIPNHVVSL 230

Query: 481 DLSHNLLQG----RIPRSLANCTMLEFLDLGNNQIADIFP-------SWLGTLPELKVLM 529
           +L  N L G     +     +   L+ + L  + + ++         +    + ++ ++ 
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 530 LQFNRFHGE 538
                 H  
Sbjct: 291 KNGKEIHPS 299

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 12/164 (7%)

Query: 128 SKIPSEIMNLSSFSGQVPSL-----GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSW 182
           S IP++   L   S  + +L       LTKL  L L  N   +  +  F  +   TEL  
Sbjct: 31  SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGT 87

Query: 183 LALANINLIGEFPSWLM-NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGY 241
           L LAN N +   P  +  +LTQL  +    NQL          L +L  L L +NQL+  
Sbjct: 88  LGLAN-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS- 145

Query: 242 LPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSN 284
           +P+     LT L  L LS NQ Q     +   L +L+ + L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 49/184 (26%), Positives = 69/184 (37%), Gaps = 34/184 (18%)

Query: 352 ELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK 411
           E LDL +  +          +T   L ++NL YN +     G    L T+L TL L +N+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLT--KLTWLNLDYNQLQTLSAGVFDDL-TELGTLGLANNQ 94

Query: 412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWL-CNLNSLRVLDLSHNFLSGVLPQCLSNSKI 470
           L                        L   +  +L  L  L L  N L   LP     S +
Sbjct: 95  LA----------------------SLPLGVFDHLTQLDKLYLGGNQLKS-LP-----SGV 126

Query: 471 FKNATNLKMIDLSHNLLQGRIPRSL-ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
           F   T LK + L+ N LQ  IP       T L+ L L  NQ+  +       L +L+ + 
Sbjct: 127 FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 530 LQFN 533
           L  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 106 SSSLFH-LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS 164
           S + F  L  L WL+L  N      + + +     F         LT+L  L L+ N  +
Sbjct: 51  SDATFRGLTKLTWLNLDYNQL--QTLSAGV-----FDD-------LTELGTLGLANNQLA 96

Query: 165 SPHSASFSWIAKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLNQLTGPIPNWLA 223
           S     F      T+L  L L   N +   PS +   LT+L  +  + NQL         
Sbjct: 97  SLPLGVFD---HLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
            L  L  LSL +NQL+         L +L  + L  NQF
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
             N    R LDL    +  +         +         ID S N ++ ++         
Sbjct: 15  YTNAVRDRELDLRGYKIPVI-------ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRR 65

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
           L+ L + NN+I  I       LP+L  L+L  N    E+G+ D       L  + +  N
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGS 248
            LI +      N  +   ++    ++   I N  A L++   +    N++R         
Sbjct: 7   ELIEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPL 62

Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL--LPKLKSLIVLF 306
           L +L  L ++ N+           L  L  L L +N+L     + +L  L  LKSL  L 
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV---ELGDLDPLASLKSLTYLC 119

Query: 307 LSAN 310
           +  N
Sbjct: 120 ILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN 508
           ++ L+           +  +  + NA   + +DL    +   I    A     + +D  +
Sbjct: 1   MVKLTAE--------LIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSD 51

Query: 509 NQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           N+I  +       L  LK L++  NR              P L  + L++N   
Sbjct: 52  NEIRKL--DGFPLLRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 45/170 (26%)

Query: 143 QVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLT 202
           Q     N  + + L+L                          +  I  +G        L 
Sbjct: 11  QAAQYTNAVRDRELDLRGYK----------------------IPVIENLGA------TLD 42

Query: 203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQF 262
           Q   I+F  N++   +      L RL  L + +N++         +L  LT L L+ N  
Sbjct: 43  QFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

Query: 263 QGPVPSSISELKRLEYL-DLHSNNLSGN---------VYIEELLPKLKSL 302
                  + +L  L  L  L    +  N         +Y+   +P+++ L
Sbjct: 101 -----VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 61/188 (32%)

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
             +  +   LDL   KIP  I    L  T      ++ S N I                 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIR---------------- 55

Query: 405 LDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
                 KL G                             L  L+ L +++N +  +    
Sbjct: 56  ------KLDG--------------------------FPLLRRLKTLLVNNNRICRIGE-- 81

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADIF---PSWLG 520
                + +   +L  + L++N L        LA+   L +L +  N + +        + 
Sbjct: 82  ----GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 137

Query: 521 TLPELKVL 528
            +P+++VL
Sbjct: 138 KVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
              I  S+N+ I K+      L+ L  L ++ N +          L  L  L L+NN+L 
Sbjct: 44  FDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 697 --GEIPRQLAELTSLAVFDVSDNNLT 720
             G++   LA L SL    +  N +T
Sbjct: 102 ELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 29/152 (19%)

Query: 304 VLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG 363
           ++ L+A  +    + T  +R +     L L    +    +     DQ + +D S N+I  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRE----LDLRGYKIPVIENLGATLDQFDAIDFSDNEIR- 55

Query: 364 KIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPEST 423
           K+ G+ L      L+ + ++ N I     G    L  DL  L L +N       +     
Sbjct: 56  KLDGFPLLR---RLKTLLVNNNRICRIGEGLDQAL-PDLTELILTNNS------LVELGD 105

Query: 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
           +  L               +L SL  L +  N
Sbjct: 106 LDPLA--------------SLKSLTYLCILRN 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI 246
           + N     P  L N   LT I+   N+++       +N+ +L  L L  N+LR  +P + 
Sbjct: 39  DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRT 97

Query: 247 -GSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSN 284
              L  L  L L  N     VP    ++L  L +L + +N
Sbjct: 98  FDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
           T L L  NQ    +P ++ +   LT +DLS N+       S S + +L  L L  N L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 289 NVYIEELLP-----KLKSLIVLFLSANNLSLITR 317
                  +P      LKSL +L L  N++S++  
Sbjct: 93  -------IPPRTFDGLKSLRLLSLHGNDISVVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
            +   +  L+  P  IP + T  YL  N      +   L N   L ++DLS+N +S  L 
Sbjct: 14  VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRIS-TLS 70

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQI 511
                ++ F N T L  + LS+N L+   PR+      L  L L  N I
Sbjct: 71  -----NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 19/204 (9%)

Query: 218 IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCN-QFQGPVPSSISELKRL 276
           IP+   +      L L    LR        +L  ++ + +S +   Q     S   L ++
Sbjct: 26  IPSLPPST---QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 277 EYLDLHSNNLSGNVYIEELLP----KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLG 332
            ++++ +        +  + P    +L  L  L +    L +    T        F+   
Sbjct: 83  THIEIRNTRN-----LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 333 LASCNLKEFLD--FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN-LITG 389
             +  +       F    ++   L L  N     + G+  N T   L  V L+ N  +T 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT--KLDAVYLNKNKYLTV 194

Query: 390 FDRGSVVLLWTDLVTLDLRSNKLQ 413
            D+ +   +++    LD+    + 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 33/214 (15%)

Query: 112 LRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN-FSSPHSAS 170
               + L L + +     IPS             +  NL  +  + +S +       S S
Sbjct: 30  PPSTQTLKLIETHL--RTIPSH------------AFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 171 FSWIAKQTELSWLALANINLIGEFPS-WLMNLTQLTYINFDLNQLTG-PIPNWLANLNRL 228
           F      ++++ + + N   +       L  L  L ++      L   P    + + +  
Sbjct: 76  FY---NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132

Query: 229 TILSLKSNQLRGYLPSQI--GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
            IL +  N     +P     G   +   L L  N F   V        +L+ + L+ N  
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNK- 190

Query: 287 SGNVYIEELLP----KLKSLI-VLFLSANNLSLI 315
               Y+  +       + S   +L +S  +++ +
Sbjct: 191 ----YLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 56/252 (22%)

Query: 249 LTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPK----LKSLIV 304
                 L L     +     + S L  +  + +  +       +++L       L  +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSFYNLSKVTH 84

Query: 305 LFLSANN-LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG 363
           + +     L+ I  +              L                 L+ L +    +  
Sbjct: 85  IEIRNTRNLTYIDPDA----------LKELP---------------LLKFLGIFNTGL-K 118

Query: 364 KIPGWLLNVTTGNLQFVNLSYNL-ITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPES 422
             P      +T     + ++ N  +T     +   L  + +TL L +N       +   +
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---VQGYA 175

Query: 423 ------TIHYLVSNNLLTGKLAPWLCN--LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNA 474
                    YL  N  LT  +         +   +LD+S   ++  LP     SK  ++ 
Sbjct: 176 FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT-ALP-----SKGLEHL 228

Query: 475 TNLKMIDLSHNL 486
             L   +    L
Sbjct: 229 KELIARNT-WTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 45/284 (15%), Positives = 83/284 (29%), Gaps = 65/284 (22%)

Query: 250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE-LLPKLKSLIVLFLS 308
            Q     ++C   Q  +PS     + L    L   +L     I       L ++  +++S
Sbjct: 11  HQEEDFRVTCKDIQR-IPSLPPSTQTL---KLIETHLR---TIPSHAFSNLPNISRIYVS 63

Query: 309 ANN-LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIP- 366
            +  L  +  +           F  L+                +  +++   +    I  
Sbjct: 64  IDVTLQQLESH----------SFYNLSK---------------VTHIEIRNTRNLTYIDP 98

Query: 367 GWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHY 426
             L  +    L+F+ +    +  F   + V        L++  N     +P         
Sbjct: 99  DALKELP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP--------- 147

Query: 427 LVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL 486
               N   G     LCN      L L +N  + V          F N T L  + L+ N 
Sbjct: 148 ---VNAFQG-----LCNE--TLTLKLYNNGFTSV------QGYAF-NGTKLDAVYLNKNK 190

Query: 487 LQGRIPR-SLAN-CTMLEFLDLGNNQIADIFPSWLGTLPELKVL 528
               I + +     +    LD+    +  +    L  L EL   
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 34/245 (13%), Positives = 77/245 (31%), Gaps = 34/245 (13%)

Query: 475 TNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR 534
              +   ++   +Q RIP    +    + L L    +  I       LP +  + +  + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 535 FHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQS 594
              ++ E  + +   K+  I++ + R    +     +            LK++       
Sbjct: 67  TLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALK--------ELPLLKFL------G 111

Query: 595 LNY----ILPSSSAYIFDYSLQYIYAYS---ITMVNKGIEMNYGKVSNFLTGIILSNNKL 647
           +      + P  +          +       +T +       +  + N    + L NN  
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLKLYNNG- 167

Query: 648 IGKIPTSISELKGLNCLNLSGNNLLGHIPSSL--GNLTVLESLDLSNNNLSGEIP-RQLA 704
              +         L+ + L+ N  L  I      G  +    LD+S  +++  +P + L 
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE 226

Query: 705 ELTSL 709
            L  L
Sbjct: 227 HLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNL 695
              + L    L      + S L  ++ + +S +  L  + S S  NL+ +  +++ N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 696 SGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQGKQFN 730
              I    L EL  L    + +  L    P   +  
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVY 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 43/184 (23%)

Query: 381 NLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW 440
           +     I   D     L       L L +N ++                      K++  
Sbjct: 31  HGMIPPIEKMDATLSTL--KACKHLALSTNNIE----------------------KISS- 65

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
           L  + +LR+L L  N +  +         +   A  L+ + +S+N +   +   +     
Sbjct: 66  LSGMENLRILSLGRNLIKKI-------ENLDAVADTLEELWISYNQIA-SL-SGIEKLVN 116

Query: 501 LEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTG--------FVFPKL 551
           L  L + NN+I +      L  L +L+ L+L  N  + +  E +             P L
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176

Query: 552 RIID 555
           + +D
Sbjct: 177 KKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 178 TELSWLALAN-INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSN 236
           TE   + L   I  I +  + L  L    ++    N +   I + L+ +  L ILSL  N
Sbjct: 23  TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISS-LSGMENLRILSLGRN 80

Query: 237 QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL 296
            ++  + +       L  L +S NQ      S I +L  L  L + +N ++    I++ L
Sbjct: 81  LIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDK-L 136

Query: 297 PKLKSLIVLFLSAN 310
             L  L  L L+ N
Sbjct: 137 AALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
              + LS N  I KI +S+S ++ L  L+L  N +   I +       LE L +S N ++
Sbjct: 50  CKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA 106

Query: 697 GEIPRQLAELTSLAVFDVSDNNLT--GQIPQGKQFNTFENSSFEGNP 741
             +   + +L +L V  +S+N +T  G+I +    +  E+    GNP
Sbjct: 107 -SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKF 328
             +E +++E L      +     ++  L  LK+   L LS NN+  I+    ++      
Sbjct: 21  VATEAEKVE-LHGMIPPIEK---MDATLSTLKACKHLALSTNNIEKIS----SLSGMENL 72

Query: 329 VFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT 388
             L L    +K+  +     D LE L +S N+I   + G    V   NL+ + +S N IT
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSGIEKLV---NLRVLYMSNNKIT 128

Query: 389 GFDRGSVVLLWTDLVTLDLRSNKLQ 413
            +     +     L  L L  N L 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 473 NATNLKMIDL--SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLML 530
            AT  + ++L      ++ ++  +L+     + L L  N I  I  S L  +  L++L L
Sbjct: 21  VATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSL 77

Query: 531 QFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
             N    +I   D   V   L  + +S+N+ +
Sbjct: 78  GRNLIK-KIENLDA--VADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 44/209 (21%)

Query: 307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIP 366
              + + +       +  + + V L      +++    L+     + L LS N I  KI 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS 64

Query: 367 GWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHY 426
              L+    NL+ ++L  NLI   +      +   L  L +  N++              
Sbjct: 65  S--LSGME-NLRILSLGRNLIKKIENLDA--VADTLEELWISYNQIA------------- 106

Query: 427 LVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL 486
                     L+  +  L +LRVL +S+N ++                  L+ + L+ N 
Sbjct: 107 ---------SLSG-IEKLVNLRVLYMSNNKITN-----WGEIDKLAALDKLEDLLLAGNP 151

Query: 487 LQGRIPRS----------LANCTMLEFLD 505
           L      +          +     L+ LD
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM 500
                S+   +     L G++P               K + LS N ++ +I  SL+    
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMEN 71

Query: 501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR 560
           L  L LG N I  I  +       L+ L + +N+    I           LR++ +S+N+
Sbjct: 72  LRILSLGRNLIKKI-ENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 33/161 (20%)

Query: 107 SSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP 166
           ++L  L+  + L+L+ NN        +I +LS           +  L+ L L +N     
Sbjct: 42  ATLSTLKACKHLALSTNNI------EKISSLS----------GMENLRILSLGRNLIKKI 85

Query: 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANL 225
                +  A    L  L ++  N I      +  L  L  +    N++T     + LA L
Sbjct: 86  E----NLDAVADTLEELWISY-NQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 226 NRLTILSLKSNQL----------RGYLPSQIGSLTQLTALD 256
           ++L  L L  N L            Y    +  L  L  LD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 3/103 (2%)

Query: 644 NNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGEIPRQ 702
                      +   + L  L +     L H+    L  L  L +L +  + L   +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 703 -LAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLC 744
                  L+  ++S N L     +  Q  + +     GNP  C
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 218 IPNWLANLNRLTILSLKSNQLRGYLPSQ-IGSLTQLTALDLSCNQFQGPVPSSISELKRL 276
             + L     LT L +++ Q   +L  + +  L +L  L +  +  +   P +     RL
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 277 EYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL 314
             L+L  N L     +     +  SL  L LS N L  
Sbjct: 83  SRLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 8e-08
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
              +L  L + +      L       +  +    L+ + +  + L+   P +      L 
Sbjct: 29  GAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH 536
            L+L  N +  +    +  L  L+ L+L  N  H
Sbjct: 84  RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 490 RIPRSLANCTMLEFLDL-GNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
                L     L  L +     +  +    L  L EL+ L +  +     +  PD     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV-APDAFHFT 79

Query: 549 PKLRIIDLSHNRFSGKLPSKYFQ 571
           P+L  ++LS N     L  K  Q
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSW-LMNLTQLTYINF 209
           + L+C         S H      +     L+ L + N   +       L  L +L  +  
Sbjct: 11  SGLRCTR--DGALDSLHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 210 DLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263
             + L    P+      RL+ L+L  N L   L  +      L  L LS N   
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 29/120 (24%)

Query: 266 VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQ 325
               +   + L  L + +     ++     L  L  L  L +  + L  +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDA------ 75

Query: 326 NKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN 385
               F                   +L  L+LS N +       +  +   +LQ + LS N
Sbjct: 76  ----FHFT---------------PRLSRLNLSFNALESLSWKTVQGL---SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 24/167 (14%), Positives = 45/167 (26%), Gaps = 57/167 (34%)

Query: 74  CCSWD-GVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPS 132
           C     G++C  D               G+++S   L    +L  L + +   +   +  
Sbjct: 6   CPHGSSGLRCTRD---------------GALDSLHHLPGAENLTELYIENQQ-HLQHLEL 49

Query: 133 EIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG 192
                         L  L +L+ L + ++        +F                     
Sbjct: 50  R------------DLRGLGELRNLTIVKSGLRFVAPDAFH-------------------- 77

Query: 193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLR 239
                     +L+ +N   N L       +  L+ L  L L  N L 
Sbjct: 78  -------FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 15/97 (15%)

Query: 656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDV 714
               GL C      +        L     L  L + N      +  + L  L  L    +
Sbjct: 8   HGSSGLRCTR----DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 715 SDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRN 751
             + L   +            +F   P L    LS N
Sbjct: 64  VKSGLR-FVAPD---------AFHFTPRLSRLNLSFN 90

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 407 LRSNKLQGPLPIPPESTIH--YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC 464
            R   L     +P    +   Y+ +   L       L  L  LR L +  + L  V P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD- 74

Query: 465 LSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN 509
                 F     L  ++LS N L+  +         L+ L L  N
Sbjct: 75  -----AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 183 LALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL 242
           L L   +L          LT LT +    N+L          L  LT L+L +NQL+  L
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 243 PSQI-GSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSNNL 286
           P+ +   LTQL  L L+ NQ Q  +P  +  +L +L+ L L+ N L
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
            Q TY++ + N L          L  LT L L  N+L+  LP+ +   LT LT L+LS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN 86

Query: 261 QFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLP-----KLKSLIVLFLSANNL 312
           Q Q        +L +L+ L L++N L         LP     KL  L  L L  N L
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQS-------LPDGVFDKLTQLKDLRLYQNQL 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 107/681 (15%), Positives = 185/681 (27%), Gaps = 247/681 (36%)

Query: 48  INKEASAHRSAHAKFASWNLEE--EDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINS 105
           ++ E   H+  +    S   +   ++ DC         +D   + K  L+   I   I S
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDC---------KDVQDMPKSILSKEEIDHIIMS 57

Query: 106 SSSLFHLRHLEWL---------------SLADN-NFNYSKI------PSEIMNL------ 137
             ++     L W                 L  N  F  S I      PS +  +      
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 138 ------SSFS-GQVPSLGNLTKLK-CL-ELSQNNFSSPHS-ASF--SWIAKQT------- 178
                   F+   V  L    KL+  L EL                +W+A          
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 179 -----ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL 233
                ++ WL L N N     P  ++ + Q      D        PNW +  +  + + L
Sbjct: 178 CKMDFKIFWLNLKNCNS----PETVLEMLQKLLYQID--------PNWTSRSDHSSNIKL 225

Query: 234 KSNQLRGYLPSQIG------SL---------TQLTALDLSC------------NQFQGPV 266
           + + ++  L   +        L             A +LSC            +      
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 267 PSSISELKRL------EYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI---TR 317
            + IS           E   L    L  +   ++L P+             LS+I    R
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDL-PREVLTTNPRR----LSIIAESIR 338

Query: 318 NTVNIRLQN-KFVFLGLASCNLKEFLDFLNDQDQLELL-DLSANKI-PG--KIPGWLLNV 372
           + +     N K V     +  ++  L+ L   +  ++   LS   + P    IP  LL  
Sbjct: 339 DGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTILL-- 392

Query: 373 TTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNL 432
                                   L+W D++  D                 ++ L   +L
Sbjct: 393 -----------------------SLIWFDVIKSD-------------VMVVVNKLHKYSL 416

Query: 433 LTGKLAPWLCNLNSLRVLDLS---------HNFL--SGVLPQCLSNSKIFKNATNLKMID 481
           +  +      ++ S+  L+L          H  +     +P+   +  +         +D
Sbjct: 417 VEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY-----LD 470

Query: 482 ---LSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE 538
               SH      I   L N    E + L        F              L F      
Sbjct: 471 QYFYSH------IGHHLKNIEHPERMTL--------FRMVF----------LDFR----- 501

Query: 539 IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI 598
                  F+  K+R    + N     L +   Q           QLK+ +        YI
Sbjct: 502 -------FLEQKIRHDSTAWNASGSILNT--LQ-----------QLKFYKP-------YI 534

Query: 599 LPSSSAY------IFDYSLQY 613
             +   Y      I D+  + 
Sbjct: 535 CDNDPKYERLVNAILDFLPKI 555

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 5e-04
 Identities = 47/299 (15%), Positives = 87/299 (29%), Gaps = 78/299 (26%)

Query: 531 QFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590
              +F  E+   +  F+   ++      +  +     +  + +N  +V  K  +   + Q
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQ 135

Query: 591 PGQSLNYILPSSSAYIFDYSLQ---YIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKL 647
           P   L   L           L+    +      +   G     GK    +   +  + K+
Sbjct: 136 PYLKLRQAL---------LELRPAKNVLIDG--V--LGS----GKTW--VALDVCLSYKV 176

Query: 648 IGKIPTSISELKGLNC-------LNLSGNNLLGHI-PSSLGNLTVLESLDLSNNNLSGEI 699
             K+   I  L   NC         L    LL  I P+         ++ L  +++  E+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 700 PRQLAEL---TSLAVFD-VSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPL--SRNCE 753
            R L        L V   V +            +N F  S        C K L  +R  +
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKA---------WNAFNLS--------C-KILLTTRFKQ 276

Query: 754 ISESSQKEDQDSETPFEFGWKIVLTGYASGLIVGVVIGQTFTTR-INAWFAKTLGMRVQ 811
           +++                    L+   +  I       T T   + +   K L  R Q
Sbjct: 277 VTD-------------------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLSCN 260
           +  T +  + N+L          L +LT LSL  NQ++  LP  +   LT+LT L L  N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86

Query: 261 QFQGPVPSSI-SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN 310
           + Q  +P+ +  +L +L+ L L +N L      + +  +L SL  ++L  N
Sbjct: 87  KLQS-LPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG 288
           T L L+SN+L+         LTQLT L LS NQ Q        +L +L  L LH N L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 289 NVYIEELLP-----KLKSLIVLFLSANNLSLITR 317
                  LP     KL  L  L L  N L  +  
Sbjct: 91  -------LPNGVFDKLTQLKELALDTNQLKSVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 156 LELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMN-LTQLTYINFDLNQL 214
           LEL  N   S     F    K T+L+ L+L+  N I   P  + + LT+LT +    N+L
Sbjct: 33  LELESNKLQSLPHGVFD---KLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 215 TGPIPNWL-ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ 261
              +PN +   L +L  L+L +NQL+         LT L  + L  N 
Sbjct: 89  QS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485
            L ++    GKL         L  L   +  L+ +                LK ++LS N
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDN 74

Query: 486 LLQGRIPRSLANCTMLEFLDLGNNQIADI-FPSWLGTLPELKVLMLQFN 533
            + G +      C  L  L+L  N+I D+     L  L  LK L L   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
             + ++ L L ++              +      L+ +   +  L   I  +L     L+
Sbjct: 15  TPSDVKELVLDNSRS-----NEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLK 67

Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
            L+L +N+++          P L  L L  N+   ++   +       L+ +DL + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 465 LSNSKIFKNATNLKMIDLS-HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
           +      +  +++K + L      +G++         LEFL   N  +  I  + L  L 
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN 64

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           +LK L L  NR  G  G        P L  ++LS N+  
Sbjct: 65  KLKKLELSDNRVSG--GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI 246
           + +  G+         +L +++     LT  I N L  LN+L  L L  N++ G L    
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELSDNRVSGGLEVLA 84

Query: 247 GSLTQLTALDLSCNQFQGP-VPSSISELKRLEYLDLHSNNLSGN----VYIEELLPKLKS 301
                LT L+LS N+ +       + +L+ L+ LDL +  ++        + +LLP+L  
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144

Query: 302 L 302
           L
Sbjct: 145 L 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  +   N   +  I  ++ +L  L  L LS N + G +         L  L+LS N + 
Sbjct: 44  LEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 697 G-EIPRQLAELTSLAVFDVSDNNLT 720
                  L +L +L   D+ +  +T
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVT 126

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 200 NLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI-GSLTQLTALDLS 258
            L  L  +    NQLTG  PN     + +  L L  N+++  + +++   L QL  L+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLY 110

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSN 284
            NQ    +P S   L  L  L+L SN
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 205 TYINFDLNQLTGPIPNWL-ANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ 263
           T +  + N+L     + L   L  L  L LK NQL G  P+     + +  L L  N+ +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 264 GPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPK-----LKSLIVLFLSAN 310
                    L +L+ L+L+ N +S        +       L SL  L L++N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-------VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 229 TILSLKSNQLRGYLPSQI-GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
           T L L  N+L       + G L  L  L+L  NQ  G  P++      ++ L L  N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 288 GNVYIEELLP-----KLKSLIVLFLSANNLSLITR 317
                   +       L  L  L L  N +S +  
Sbjct: 92  E-------ISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
           T+D     L+  P  IP  +T   L  N L           L  L  L+L  N L+G + 
Sbjct: 12  TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IE 70

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                   F+ A++++ + L  N ++    +       L+ L+L +NQI+ + P     L
Sbjct: 71  -----PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 523 PELKVLMLQFN 533
             L  L L  N
Sbjct: 126 NSLTSLNLASN 136

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 52/372 (13%), Positives = 108/372 (29%), Gaps = 36/372 (9%)

Query: 222 LANLNRLTILSLKSNQLRGYLPSQIGSL----TQLTALDLSCNQFQGPVPSSISEL---- 273
           + +  ++  L ++ +         +  L    T L  L+    +F    P  +  +    
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 274 KRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGL 333
           + L  + +    +   V   +    L+      L+      +    +N+    K   LGL
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN--EDIGMPEKYMNLVFPRKLCRLGL 277

Query: 334 ASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRG 393
           +     E         Q+  LDL    +  +    L+     NL+ +    N+I      
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP-NLEVLETR-NVIGDRGLE 335

Query: 394 SVVLLWTDLVTLDLRSNKLQGPLPIPP----ESTIHYLVSN-----------NLLTGK-- 436
            +      L  L +     +  +        +  +  L              + +T +  
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395

Query: 437 --LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN--LLQGRIP 492
             +  +L NL   R++ L        LP       +      L+          L     
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455

Query: 493 RSLA-NCTMLEFLDLGNNQIADI-FPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK 550
             +      + ++ LG    +D     +    P L+ L ++   F  E          P 
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPS 514

Query: 551 LRIIDLSHNRFS 562
           LR + +   R S
Sbjct: 515 LRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 59/409 (14%), Positives = 129/409 (31%), Gaps = 49/409 (11%)

Query: 111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS 170
           H R ++ L + +++F+  K    +  L+          + T L+ L      F+      
Sbjct: 162 HCRKIKTLLMEESSFS-EKDGKWLHELAQ---------HNTSLEVLNFYMTEFAKISPKD 211

Query: 171 FSWIAKQ-TELSWLALANINLI--GEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR 227
              IA+    L  + + +  ++    F     NL +    + + +         L    +
Sbjct: 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLS-CNQFQGPVPSSISELKRLEYLDLHSNNL 286
           L  L L        +P       Q+  LDL           + I +   LE L+    N+
Sbjct: 272 LCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NV 328

Query: 287 SGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLN 346
            G+  +E L    K L  L +                +  + +      C          
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIE-RGADEQGMEDEEGLVSQRGLIALAQGCQ--------- 378

Query: 347 DQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD 406
              +LE + +  + I  +    L ++ T      +    L+   +R + + L   + +L 
Sbjct: 379 ---ELEYMAVYVSDITNE---SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 407 LRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLC-NLNSLRVLDLSHNFLSGVLPQCL 465
           +   KL+            + +    LT     ++     ++R + L +    G   + L
Sbjct: 433 IGCKKLR---------RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY---VGESDEGL 480

Query: 466 SNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-NCTMLEFLDLGNNQIAD 513
                 +   NL+ +++       R   +       L +L +   + + 
Sbjct: 481 ME--FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485
            L +     GK+        +L  L L +  L  V                LK ++LS N
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSEN 81

Query: 486 LLQGRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFN 533
            + G +         L  L+L  N++ DI     L  L  LK L L   
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 179 ELSWLALANI-NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ 237
            +  L L N  +  G+          L +++     L   + N L  L +L  L L  N+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELSENR 82

Query: 238 LRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGN----VYI 292
           + G L      L  LT L+LS N+ +       + +L+ L+ LDL +  ++        +
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 293 EELLPKLKSL 302
            +LLP+L  L
Sbjct: 143 FKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 465 LSNSKIFKNATNLKMIDLS-HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLP 523
           +      +    ++ + L       G+I    A    LEFL L N  +  +  S L  LP
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP 71

Query: 524 ELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           +LK L L  NR  G  G        P L  ++LS N+  
Sbjct: 72  KLKKLELSENRIFG--GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS 696
           L  + L N   +  + +++ +L  L  L LS N + G +      L  L  L+LS N L 
Sbjct: 51  LEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 697 --GEIPRQLAELTSLAVFDVSDNNLT 720
               +   L +L  L   D+ +  +T
Sbjct: 109 DISTL-EPLKKLECLKSLDLFNCEVT 133

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 51/301 (16%), Positives = 89/301 (29%), Gaps = 56/301 (18%)

Query: 249 LTQLTALDLSCNQFQGPVPSSISEL-----KRLEYLDLHSNNLSGNVYIEELLPKLKSLI 303
           L+ L  L+L+  +      + ++ +       L+ ++L S  L     +  LLP      
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRAR 129

Query: 304 VLFLSANNL---------SLITRNTVNIRLQNKFVFLGLASCNL-----KEFLDFLNDQD 349
            L L  N+L          L+  +   I        L L++  L        ++ L    
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQIT------TLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 350 QLELLDLSANKIPGKIPGWLL------NVTTGNLQFVNLSYNLITGFDRGSVVLLW---- 399
            +  L L    + G     LL      N     LQ +N++YN     D  ++ L      
Sbjct: 184 SVTHLSLLHTGL-GDEGLELLAAQLDRNRQ---LQELNVAYNGAG--DTAALALARAARE 237

Query: 400 -TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
              L  L L  N+L        E             G     +       V +     LS
Sbjct: 238 HPSLELLHLYFNELS------SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILS 291

Query: 459 GVL--PQCLSNSKIFKNATNLKMIDLSHNLLQ----GRIPRSLANCTMLEFLDLGNNQIA 512
            V         +++ ++   L + DL  +        R  + L     +  L        
Sbjct: 292 EVQRNLNSWDRARVQRHLE-LLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

Query: 513 D 513
            
Sbjct: 351 S 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 33/257 (12%)

Query: 331 LGLASCN----LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNL 386
           +GL S +    L +    + + D LE       K+     G L        + ++  +  
Sbjct: 4   VGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKL-----GKLGRQVLPPSELLDHLFFH 58

Query: 387 ITGFDRGSVVLLWTDLVTLDLRSNKLQGP---------LPIPPESTIHYLVSNNLLTGKL 437
               ++     + + L  L+L   ++  P         L     +     +++  L    
Sbjct: 59  YEFQNQRFSAEVLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117

Query: 438 APWLCN-LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IP 492
              L       R L L  N L     + L    +  +   +  + LS+N L       + 
Sbjct: 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLR-DLLLHDQCQITTLRLSNNPLTAAGVAVLM 176

Query: 493 RSLANCTMLEFLDLGNNQIADIFPSWLGTL----PELKVLMLQFNRFHGEIGEPDTGFVF 548
             LA  T +  L L +  + D     L        +L+ L + +N   G+          
Sbjct: 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAA 235

Query: 549 ---PKLRIIDLSHNRFS 562
              P L ++ L  N  S
Sbjct: 236 REHPSLELLHLYFNELS 252

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 8e-06
 Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 637 LTGIILSNNKLIGKIPTSISE---LKGLNCLNLSGNNL----LGHIPSSLGNLTVLESLD 689
           L  + + + +    +     E   L  L  +++S   L       +   +  +  L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 690 LSNNNLSGEIPRQLAE 705
           +  N LS E+ ++L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 437 LAPWLCN--LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR---- 490
             P        +L+ L +       V+ +    S I      L+ +D+S  +L       
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ---LETMDISAGVLTDEGARL 298

Query: 491 IPRSLANCTMLEFLDLGNNQIAD 513
           +   +     L+F+++  N ++D
Sbjct: 299 LLDHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 12/133 (9%)

Query: 441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA---- 496
                +L+ L++    L   + + +  S    N   L +     +               
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSD-LPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 497 --NCTMLEFLDLGNNQIADIFPSWLGT---LPELKVLMLQFNRFHGEIGE--PDTGFVFP 549
                 L++L + + +  ++          LP+L+ + +       E      D      
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 550 KLRIIDLSHNRFS 562
            L+ I++ +N  S
Sbjct: 308 HLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 29/172 (16%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL--------WTD 401
            L+ L++ +  +P  +   +L     NL+ + L   +      G + +         + +
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253

Query: 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
           L  L +   + Q  +                L          L  L  +D+S   L+   
Sbjct: 254 LKWLGIVDAEEQNVVVEM------------FLESD------ILPQLETMDISAGVLTDEG 295

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD 513
            + L +        +LK I++ +N L   + + L     ++ +D+ ++Q  D
Sbjct: 296 ARLLLDH--VDKIKHLKFINMKYNYLSDEMKKELQKSLPMK-IDVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 7e-05
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 38/205 (18%)

Query: 114 HLEWLSLADNNFNYSKIPS-EIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFS 172
            + W+   D +     +P    + +   +           LK LE+              
Sbjct: 155 EISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSV----- 209

Query: 173 WIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA------NLN 226
                  +  +  ++          L NL +L       +       N            
Sbjct: 210 -------VEDILGSD----------LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 227 RLTILSLKSNQLRGYLPSQIGS---LTQLTALDLSCNQFQG----PVPSSISELKRLEYL 279
            L  L +   + +  +         L QL  +D+S           +   + ++K L+++
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 280 DLHSNNLS--GNVYIEELLPKLKSL 302
           ++  N LS      +++ LP    +
Sbjct: 313 NMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 658 LKGLNCLNLSGNNLLGHIPSSLGN---LTVLESLDLSNNNLSGEIPRQLAE----LTSLA 710
              L  L +        +         L  LE++D+S   L+ E  R L +    +  L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 711 VFDVSDNNLTGQ 722
             ++  N L+ +
Sbjct: 311 FINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 216 GPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI--SEL 273
             +   L  +  L  L +K                 L +L++        V   I  S+L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---RPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 274 KRLEYLDLH--SNNLSGNVYIEELLP-----KLKSLIVLFLSANNLS-----LITRNTVN 321
             LE L L+    +   +  +    P     +  +L  L +           +   + + 
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 322 IRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLSANKI 361
            +L+     + +++  L     +  LD ++    L+ +++  N +
Sbjct: 279 PQLE----TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 14/88 (15%)

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSNNLS 287
            +L L  NQ+    P     LTQLT LDL  NQ    +P+ +  +L +L  L L+ N L 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK 91

Query: 288 GNVYIEELLPK-----LKSLIVLFLSAN 310
                   +P+     LKSL  ++L  N
Sbjct: 92  S-------IPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI-SELKRLEYLDLHSNNLS 287
             L L +NQ+    P     L  L  L  + N+    +P+ +  +L +L  LDL+ N+L 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94

Query: 288 GNVYIEELLP-----KLKSLIVLFLSAN 310
                   +P      LKSL  ++L  N
Sbjct: 95  S-------IPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	821
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.59

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.3e-84  Score=770.98  Aligned_cols=682  Identities=30%  Similarity=0.421  Sum_probs=505.5

Q ss_pred             CCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCccc---ccCCc
Q 041782           31 CHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGS---INSSS  107 (821)
Q Consensus        31 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~---~~~~~  107 (821)
                      +.++||+|||+||+++.++.          .+++|+.   +++||+|+||+|+  .+||++|+|++.++.|.   +++  
T Consensus         9 ~~~~~~~all~~k~~~~~~~----------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--   71 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN----------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--   71 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT----------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--
T ss_pred             CCHHHHHHHHHHHhhCCCcc----------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--
Confidence            46789999999999997542          5899985   6899999999998  58999999999999998   765  


Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccC----------CCcccCCC---CCCCCCCCEEEcCCCCCCCCCCCCchhc
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLS----------SFSGQVPS---LGNLTKLKCLELSQNNFSSPHSASFSWI  174 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~----------~~~~~ip~---l~~l~~L~~L~Ls~n~~~~~~~~~~~~l  174 (821)
                      ++.++++|+.++++.+.+.  .+|+.+++++          .+.|.+|.   ++++++|++|+|++|.+.+..|   ..+
T Consensus        72 ~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~  146 (768)
T 3rgz_A           72 SLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK---VSG  146 (768)
T ss_dssp             HTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS---CCS
T ss_pred             hHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC---HHH
Confidence            6777777777777777653  2445533332          12233332   5666666666666666665555   222


Q ss_pred             -cCCCCCCEEecCCccccccCCcc---ccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782          175 -AKQTELSWLALANINLIGEFPSW---LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT  250 (821)
Q Consensus       175 -~~l~~L~~L~L~~n~~~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  250 (821)
                       .++++|++|++++|.+.+..|..   +.++++|++|++++|.+++..|.  ..+++|++|++++|.+++.+|. +++++
T Consensus       147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~  223 (768)
T 3rgz_A          147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS  223 (768)
T ss_dssp             CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred             hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence             55666666666666666665555   56666677777777666655443  6677777777777777776666 77788


Q ss_pred             CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeE
Q 041782          251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF  330 (821)
Q Consensus       251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  330 (821)
                      +|++|++++|.+++.+|..+.++++|++|++++|.+.+.++.   . .+++|++|++++|.+++..+..+. ..+++|++
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~-~l~~L~~L~L~~n~l~~~ip~~~~-~~~~~L~~  298 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---L-PLKSLQYLSLAENKFTGEIPDFLS-GACDTLTG  298 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---C-CCTTCCEEECCSSEEEESCCCCSC-TTCTTCSE
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---c-ccCCCCEEECcCCccCCccCHHHH-hhcCcCCE
Confidence            888888888888777777778888888888888887766554   2 677888888888887755544432 12478888


Q ss_pred             EecCCCCC-chhhhhhcCCCccceEecccCCCCCCCCcc-hhccCCCCeeEEEcCCCCCCCCCCCccccccC-CccEEEe
Q 041782          331 LGLASCNL-KEFLDFLNDQDQLELLDLSANKIPGKIPGW-LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT-DLVTLDL  407 (821)
Q Consensus       331 L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~-~L~~L~L  407 (821)
                      |++++|.+ +.+|..++.+++|++|++++|++.+.+|.. +..+  ++|++|++++|.+++..+.. +..++ +|++|++
T Consensus       299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L  375 (768)
T 3rgz_A          299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSGELPES-LTNLSASLLTLDL  375 (768)
T ss_dssp             EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEECCCTT-HHHHTTTCSEEEC
T ss_pred             EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCCEEeCcCCccCccccHH-HHhhhcCCcEEEc
Confidence            88888888 577888888888899999888888777765 7777  78899999999888766653 34444 8888888


Q ss_pred             ccCcccCcCCCC-----CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEec
Q 041782          408 RSNKLQGPLPIP-----PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDL  482 (821)
Q Consensus       408 ~~n~l~~~~~~~-----~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~L  482 (821)
                      ++|.+++.+|..     ..+++.+++++|.+++.+|..++++++|++|++++|++++.+|..++      .+++|++|++
T Consensus       376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~L  449 (768)
T 3rgz_A          376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG------SLSKLRDLKL  449 (768)
T ss_dssp             CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG------GCTTCCEEEC
T ss_pred             cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh------cCCCCCEEEC
Confidence            888888766654     45688888888988888888888899999999999998888887654      3677888888


Q ss_pred             cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782          483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS  562 (821)
Q Consensus       483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  562 (821)
                      ++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++.+.+|..+  ..+++|++|+|++|+++
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCccc
Confidence            8888887788888888888888888888887778778888888888888888877777665  55778888888888888


Q ss_pred             cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc--------cccccccc--------c--------------c
Q 041782          563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS--------SAYIFDYS--------L--------------Q  612 (821)
Q Consensus       563 g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~--------~--------------~  612 (821)
                      |.+|.. +..+++|+.++++.+...+..|...........        ..+.....        .              .
T Consensus       528 ~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          528 GNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             CcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            777755 667777777777655443332211100000000        00000000        0              0


Q ss_pred             eeeeeeEE---EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEe
Q 041782          613 YIYAYSIT---MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLD  689 (821)
Q Consensus       613 ~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  689 (821)
                      ........   ....+........++.|+.|||++|+++|.+|.+++++++|++|+|++|+++|.+|..|+++++|++||
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence            00000000   000111111122356799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 041782          690 LSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEIS  755 (821)
Q Consensus       690 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~  755 (821)
                      |++|+++|.+|..+..+++|++||+++|+++|.||.+++|.++...+|.|||++||.|+. .|...
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            999999999999999999999999999999999999999999999999999999999987 89643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.3e-64  Score=596.40  Aligned_cols=601  Identities=29%  Similarity=0.399  Sum_probs=480.7

Q ss_pred             CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782           88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH  167 (821)
Q Consensus        88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~  167 (821)
                      +++.|+|+++.+.|.++....++++++|++|||++|.+.+ .+|..+            +.++++|++|+|++|.+++..
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~------------~~~l~~L~~L~Ls~n~l~~~~  167 (768)
T 3rgz_A          101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSG------------GLKLNSLEVLDLSANSISGAN  167 (768)
T ss_dssp             TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCS------------CCCCTTCSEEECCSSCCEEET
T ss_pred             CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHH------------hccCCCCCEEECCCCccCCcC
Confidence            4555666666665555433355566666666666665542 223221            488999999999999999988


Q ss_pred             CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782          168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIG  247 (821)
Q Consensus       168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  247 (821)
                      |..+..+.++++|++|++++|.+.+.+|.  .++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+.
T Consensus       168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          168 VVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             HHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred             ChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence            73333388999999999999999887764  8999999999999999988887 99999999999999999999999999


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCC
Q 041782          248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK  327 (821)
Q Consensus       248 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  327 (821)
                      ++++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|. .....+++|++|++++|.+++..+..+  ..+++
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~  319 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFF--GSCSL  319 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC-CSCTTCTTCSEEECCSSEEEECCCGGG--GGCTT
T ss_pred             cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH-HHHhhcCcCCEEECcCCcCCCccchHH--hcCCC
Confidence            9999999999999999888775  899999999999999987776 434446999999999999998777665  36899


Q ss_pred             eeEEecCCCCC-chhhhh-hcCCCccceEecccCCCCCCCCcchhccCCC-CeeEEEcCCCCCCCCCCCcccc-ccCCcc
Q 041782          328 FVFLGLASCNL-KEFLDF-LNDQDQLELLDLSANKIPGKIPGWLLNVTTG-NLQFVNLSYNLITGFDRGSVVL-LWTDLV  403 (821)
Q Consensus       328 L~~L~L~~~~l-~~~~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~-~~~~L~  403 (821)
                      |++|++++|.+ +.+|.. +..+++|++|++++|++.+.+|..+..+  + +|++|++++|.+++..+..... .+++|+
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH--TTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh--hcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            99999999999 488866 8999999999999999999999999888  5 8999999999998866653222 267899


Q ss_pred             EEEeccCcccCcCCCC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEE
Q 041782          404 TLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMI  480 (821)
Q Consensus       404 ~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L  480 (821)
                      +|++++|.+++.+|..   ..+++.+++++|.+++.+|..++++++|++|++++|++.+.+|..+.      .+++|++|
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L  471 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETL  471 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEE
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEE
Confidence            9999999999888765   67899999999999999999999999999999999999999988654      47999999


Q ss_pred             eccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782          481 DLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR  560 (821)
Q Consensus       481 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  560 (821)
                      ++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|++|+|++|++.+.+|..+  ..+++|++|++++|+
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNL  549 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCc
Confidence            999999999999999999999999999999999999999999999999999999999998877  679999999999999


Q ss_pred             CccCCChhhhhccchhhhhcccc---chhcccCCC------------------CCcccccCC-----c----cccccccc
Q 041782          561 FSGKLPSKYFQCWNAIKVANKSQ---LKYMQDQPG------------------QSLNYILPS-----S----SAYIFDYS  610 (821)
Q Consensus       561 l~g~ip~~~~~~l~~l~~l~~~~---~~~~~~~~~------------------~~l~~~~~~-----~----~~~~~~~~  610 (821)
                      ++|.+|..++...... .+....   ..++.....                  ..+......     .    ........
T Consensus       550 l~g~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKI-AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EESBCCGGGGTTTTCB-CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             cCCcCChHHhcccchh-hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            9999998865533221 111110   000000000                  000000000     0    00000000


Q ss_pred             cceeeeeeEEEEecceeeecc---cccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCe
Q 041782          611 LQYIYAYSITMVNKGIEMNYG---KVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLES  687 (821)
Q Consensus       611 ~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  687 (821)
                      ........+++..+.+...++   ..++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            111223345555554443332   23678999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcccccCCCCccccCCccEEEcccCc-ccc
Q 041782          688 LDLSNNNLSGEIPRQLAELTSLAVFDVSDNN-LTG  721 (821)
Q Consensus       688 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g  721 (821)
                      |||++|+++|.+|.. ..+..+....+.+|+ +.|
T Consensus       709 L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             EECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             EECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            999999999999975 233445555667776 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.2e-57  Score=532.03  Aligned_cols=579  Identities=20%  Similarity=0.173  Sum_probs=400.4

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP  166 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~  166 (821)
                      .+++.|+|+++.+.+..+.  ++.++++|++|+|++|.+.+ ..|..             ++++++|++|+|++|.+++.
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~~~-------------~~~l~~L~~L~L~~n~l~~l   88 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISK-LEPEL-------------CQKLPMLKVLNLQHNELSQL   88 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCC-CCTTH-------------HHHCTTCCEEECCSSCCCCC
T ss_pred             CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCc-cCHHH-------------HhcccCcCEEECCCCccCcc
Confidence            4788999999988876544  78899999999999998864 23444             67788999999999999877


Q ss_pred             CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782          167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI  246 (821)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  246 (821)
                      .+   ..++++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+
T Consensus        89 ~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A           89 SD---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CT---TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             Ch---hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence            66   567888999999999999877777788999999999999999988888888899999999999999887776665


Q ss_pred             C--CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccc--cCCCCCCCeEECCCcccceeccccchh
Q 041782          247 G--SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEEL--LPKLKSLIVLFLSANNLSLITRNTVNI  322 (821)
Q Consensus       247 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~  322 (821)
                      .  .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+.... ..  ....++|+.|++++|.+++..+..+..
T Consensus       166 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE-KLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH-HHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH-HHHHHhhhccccEEEccCCcccccChhHhhc
Confidence            4  568899999999999888888888888888888888776532211 00  113477888888888888777666543


Q ss_pred             ccCCCeeEEecCCCCCchh-hhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCC--------C
Q 041782          323 RLQNKFVFLGLASCNLKEF-LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDR--------G  393 (821)
Q Consensus       323 ~~~~~L~~L~L~~~~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~--------~  393 (821)
                      ...++|+.|++++|.+..+ +..+..+++|++|++++|++.+..|..+..+  ++|++|++++|...+...        .
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~  322 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDD  322 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECT
T ss_pred             cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccCh
Confidence            3335588888888888544 4667888888888888888887777777777  788888888765442111        1


Q ss_pred             ccccccCCccEEEeccCcccCcCCCC---CcccceeeccCCccCCCC--chhhhC--CCCCcEEEcCCCcCcccCCcccc
Q 041782          394 SVVLLWTDLVTLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKL--APWLCN--LNSLRVLDLSHNFLSGVLPQCLS  466 (821)
Q Consensus       394 ~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~  466 (821)
                      ..+..+++|++|++++|.+.+..+..   ..+++.+++++|.+....  ...+..  .++|+.|++++|++++..|..+ 
T Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-  401 (680)
T 1ziw_A          323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-  401 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-
T ss_pred             hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-
Confidence            13456678888888888887765543   466777778777654322  112222  2578888888888877766543 


Q ss_pred             CcccccCCCcccEEeccCccccccCc-hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCc--ccCCCCC
Q 041782          467 NSKIFKNATNLKMIDLSHNLLQGRIP-RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH--GEIGEPD  543 (821)
Q Consensus       467 ~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~  543 (821)
                           ..+++|++|++++|.+++.+| ..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+
T Consensus       402 -----~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          402 -----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             -----TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             -----hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence                 446778888888888776555 56777888888888888887777777778888888888888776  3445544


Q ss_pred             ccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEe
Q 041782          544 TGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN  623 (821)
Q Consensus       544 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  623 (821)
                        ..+++|++|++++|+++ .+|...|..+++|+.++++.+....... ....                           
T Consensus       477 --~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~---------------------------  525 (680)
T 1ziw_A          477 --QPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWK-HANP---------------------------  525 (680)
T ss_dssp             --TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGS-TTST---------------------------
T ss_pred             --ccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccch-hhcc---------------------------
Confidence              56778888888888877 4554545555555555444322110000 0000                           


Q ss_pred             cceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCc
Q 041782          624 KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQL  703 (821)
Q Consensus       624 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  703 (821)
                       +........++.|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+
T Consensus       526 -~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          526 -GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             -TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             -CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence             0000001113446666666666663333346666666666666666665555556666666666666666666555555


Q ss_pred             c-ccCCccEEEcccCcccccCCC
Q 041782          704 A-ELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       704 ~-~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      . .+++|+.|++++|++.+.++.
T Consensus       605 ~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          605 GPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccccCEEEccCCCcccCCcc
Confidence            5 566666666666666666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-56  Score=532.82  Aligned_cols=559  Identities=22%  Similarity=0.232  Sum_probs=392.4

Q ss_pred             ccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCC-CccccccCCCcccCCCCCCCCCC
Q 041782           75 CSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKI-PSEIMNLSSFSGQVPSLGNLTKL  153 (821)
Q Consensus        75 c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~l-p~~~~~l~~~~~~ip~l~~l~~L  153 (821)
                      |.|..|.+  ...+++.|+|+++.+++..+.  ++.++++|++|||++|.+.+ .+ |..             ++++++|
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~-~i~~~~-------------f~~L~~L   75 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPL-TIDKEA-------------FRNLPNL   75 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCC-EECTTT-------------TSSCTTC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCcc-ccCHHH-------------hcCCCCC
Confidence            56777777  346788999999888876665  88899999999999886532 23 333             7888899


Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCcc--ccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCE
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSW--LMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTI  230 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~  230 (821)
                      ++|+|++|.+++..|   ..+.++++|++|++++|.+.+.+|..  |.++++|++|++++|.+++..+ ..|+++++|++
T Consensus        76 ~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           76 RILDLGSSKIYFLHP---DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             CEEECTTCCCCEECT---TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CEEECCCCcCcccCH---hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            999999999988888   67788888999999999888876665  8889999999999998887654 57888999999


Q ss_pred             EEccCCcCCCCCccccCCC--CCCCEEEccCccCCCCCCccccCCCC------cCeeccccCCceeecccccccC--CCC
Q 041782          231 LSLKSNQLRGYLPSQIGSL--TQLTALDLSCNQFQGPVPSSISELKR------LEYLDLHSNNLSGNVYIEELLP--KLK  300 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~~~l~--~l~  300 (821)
                      |++++|.+++..+..+..+  ++|++|++++|.+.+..|..++.+++      |++|++++|.+++..+. ....  ...
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~l~~~  231 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISKS  231 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS-GGGGTSCSC
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH-HHHhhcCcc
Confidence            9999998888888888777  88899999999888888877776665      88888888887765443 2111  235


Q ss_pred             CCCeEECCCcccceeccccchhccCCCeeEEecCCCCCc-hhhhhhcC--CCccceEecccCCCCCCCCcchhccCCCCe
Q 041782          301 SLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLK-EFLDFLND--QDQLELLDLSANKIPGKIPGWLLNVTTGNL  377 (821)
Q Consensus       301 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L  377 (821)
                      +++.+.++.+.....                 +..+.+. .....+..  .++|+.|++++|.+.+..|..+..+  ++|
T Consensus       232 ~l~~L~l~~~~~~~~-----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L  292 (844)
T 3j0a_A          232 QAFSLILAHHIMGAG-----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL--KDL  292 (844)
T ss_dssp             CBSEEECCSSCCBCS-----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC--CCC
T ss_pred             cccceeccccccccc-----------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC--CCC
Confidence            667777664322110                 0001110 00111111  1445555555555554444444444  455


Q ss_pred             eEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCC
Q 041782          378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSH  454 (821)
Q Consensus       378 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~  454 (821)
                      +.|+|++|.+++..+. .+..+++|++|++++|.+.+..+..   .++++.+++++|.+.+..+..+..+++|++|++++
T Consensus       293 ~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          293 KVLNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CEEEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CEEECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            5555555555544433 2334455555555555554433322   33455555555555555566788889999999999


Q ss_pred             CcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC-chhhCCCCCCCEEEccCC
Q 041782          455 NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF-PSWLGTLPELKVLMLQFN  533 (821)
Q Consensus       455 n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N  533 (821)
                      |.+++.           ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+..+++|++|+|++|
T Consensus       372 N~l~~i-----------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  436 (844)
T 3j0a_A          372 NALTTI-----------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN  436 (844)
T ss_dssp             CCSCCC-----------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred             CCCCcc-----------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence            988743           12678999999999988 45543   567899999999998863 344668999999999999


Q ss_pred             cCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782          534 RFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY  613 (821)
Q Consensus       534 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  613 (821)
                      ++++..+.. ....+++|+.|++++|.+++..+.....                                          
T Consensus       437 ~l~~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------  473 (844)
T 3j0a_A          437 RFSSCSGDQ-TPSENPSLEQLFLGENMLQLAWETELCW------------------------------------------  473 (844)
T ss_dssp             CCCCCCSSS-SSCSCTTCCBCEEESCCCSSSCCSCCCS------------------------------------------
T ss_pred             ccccccccc-ccccCCccccccCCCCccccccccccch------------------------------------------
Confidence            988654332 2245789999999999987332211000                                          


Q ss_pred             eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782          614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN  693 (821)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  693 (821)
                                     .....++.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+.  ++|+.|||++|
T Consensus       474 ---------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          474 ---------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             ---------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             ---------------hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence                           0001134588999999999999999999999999999999999987777665  89999999999


Q ss_pred             cccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 041782          694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISES  757 (821)
Q Consensus       694 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~~  757 (821)
                      ++++.+|..|.   +|+.|++++|++.|.++... |..+   ...++..+||.+....|..|..
T Consensus       537 ~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~-f~~~---~~~~~~~~~~~~~~~~C~~p~~  593 (844)
T 3j0a_A          537 QLLAPNPDVFV---SLSVLDITHNKFICECELST-FINW---LNHTNVTIAGPPADIYCVYPDS  593 (844)
T ss_dssp             CCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS-HHHH---HHHTTTTTCCCGGGCCCSSCSS
T ss_pred             cCCCCChhHhC---CcCEEEecCCCcccccccHH-HHHH---HHhcCcccccccccCccCCchh
Confidence            99999998764   78899999999999887432 2111   1245667788777778875543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-53  Score=505.14  Aligned_cols=544  Identities=21%  Similarity=0.180  Sum_probs=341.1

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP  166 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~  166 (821)
                      .+++.|+|+++.+.+..+.  ++.++++|++|+|++|.+.  .+|+..            ++++++|++|+|++|.+++.
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~--~l~~~~------------~~~l~~L~~L~L~~n~l~~~  112 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELS--QLSDKT------------FAFCTNLTELHLMSNSIQKI  112 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCC--CCCTTT------------TTTCTTCSEEECCSSCCCCC
T ss_pred             CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccC--ccChhh------------hccCCCCCEEECCCCccCcc
Confidence            5789999999999887765  8999999999999999986  355431            78999999999999999988


Q ss_pred             CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhh--cCCCCCEEEccCCcCCCCCcc
Q 041782          167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLA--NLNRLTILSLKSNQLRGYLPS  244 (821)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~  244 (821)
                      .|   ..++++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|.
T Consensus       113 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          113 KN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             CS---CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             Ch---hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            88   6778999999999999999998899999999999999999999987777665  568999999999999988888


Q ss_pred             ccCCCCCCCEEEccCccCCCCCCccc---cCCCCcCeeccccCCceeecccccccCCCC--CCCeEECCCcccceecccc
Q 041782          245 QIGSLTQLTALDLSCNQFQGPVPSSI---SELKRLEYLDLHSNNLSGNVYIEELLPKLK--SLIVLFLSANNLSLITRNT  319 (821)
Q Consensus       245 ~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~  319 (821)
                      .+..+++|+.|+++++.+.+.....+   ...++|++|++++|.+.+..+.  .+..++  +|++|++++|.++++.+..
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~--~~~~l~~~~L~~L~Ls~n~l~~~~~~~  267 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT--TFLGLKWTNLTMLDLSYNNLNVVGNDS  267 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT--TTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh--HhhccCcCCCCEEECCCCCcCccCccc
Confidence            88777666666555554432111111   0224555555555555543322  233332  2555555555555544433


Q ss_pred             chhccCCCeeEEecCCCCC-chhhhhhcCCCccceEecccCCCCC-----CCCc----chhccCCCCeeEEEcCCCCCCC
Q 041782          320 VNIRLQNKFVFLGLASCNL-KEFLDFLNDQDQLELLDLSANKIPG-----KIPG----WLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       320 ~~~~~~~~L~~L~L~~~~l-~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~p~----~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                      +  ..+++|++|++++|.+ +..|..+..+++|++|++++|...+     .+|.    .+..+  ++|++|++++|.+++
T Consensus       268 ~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l--~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          268 F--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL--KCLEHLNMEDNDIPG  343 (680)
T ss_dssp             T--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC--TTCCEEECCSCCBCC
T ss_pred             c--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC--CCCCEEECCCCccCC
Confidence            3  2345555555555555 2233445555555555555543332     1121    23333  455555555555555


Q ss_pred             CCCCccccccCCccEEEeccCcccCcC-CCC------CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCC
Q 041782          390 FDRGSVVLLWTDLVTLDLRSNKLQGPL-PIP------PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP  462 (821)
Q Consensus       390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~------~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  462 (821)
                      ..+. .+..+++|++|++++|.+.... +..      ..+++.+++++|.+++..|..+..+++|++|++++|.+.+.+|
T Consensus       344 ~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          344 IKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred             CChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence            4433 2344455555555555433211 100      1245555555555555555555555555555555555554444


Q ss_pred             ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCC--cCCchhhCCCCCCCEEEccCCcCcccCC
Q 041782          463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA--DIFPSWLGTLPELKVLMLQFNRFHGEIG  540 (821)
Q Consensus       463 ~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~  540 (821)
                      ..     .|.++++|++|++++|++.+..+..|..+++|++|++++|.+.  +..|..+..+++|++|++++|++++..+
T Consensus       423 ~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~  497 (680)
T 1ziw_A          423 GQ-----EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND  497 (680)
T ss_dssp             SG-----GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cc-----cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence            21     2334555555555555555555555555555555555555554  3345555555555555555555554333


Q ss_pred             CCCccCCCCCCcEEEccCCcCccCC-------ChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccce
Q 041782          541 EPDTGFVFPKLRIIDLSHNRFSGKL-------PSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY  613 (821)
Q Consensus       541 ~~~~~~~l~~L~~L~Ls~N~l~g~i-------p~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  613 (821)
                      ..+  ..+++|++|++++|++++..       |...+..++.|+.++++.+... ..+                      
T Consensus       498 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~----------------------  552 (680)
T 1ziw_A          498 DML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIP----------------------  552 (680)
T ss_dssp             TTT--TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCC----------------------
T ss_pred             hhh--ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCC----------------------
Confidence            333  34555555555555554311       1111334444444443322110 000                      


Q ss_pred             eeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc-CccCCCeEeCCC
Q 041782          614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG-NLTVLESLDLSN  692 (821)
Q Consensus       614 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~  692 (821)
                                    ......++.|+.|+|++|++++..+..|.++++|++|+|++|++++..|..++ .+++|+.|++++
T Consensus       553 --------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          553 --------------VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             --------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             --------------HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence                          00001145599999999999977777789999999999999999999999888 899999999999


Q ss_pred             CcccccCC
Q 041782          693 NNLSGEIP  700 (821)
Q Consensus       693 N~l~~~~p  700 (821)
                      |++.+.-+
T Consensus       619 N~~~c~c~  626 (680)
T 1ziw_A          619 NPFDCTCE  626 (680)
T ss_dssp             CCCCBCCC
T ss_pred             CCcccCCc
Confidence            99987654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.8e-53  Score=491.75  Aligned_cols=516  Identities=21%  Similarity=0.175  Sum_probs=362.8

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      +++++|||++|.+++. .|..             ++++++|++|+|++|.+.+..|   ..+.++++|++|++++|.+.+
T Consensus        33 ~~l~~L~Ls~n~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTI-QNTT-------------FSRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             TTCCEEECTTCCCSEE-CTTT-------------STTCTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSE
T ss_pred             CcCcEEEccCCccCcC-ChhH-------------hccCccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccc
Confidence            4789999999888631 2333             7888889999999998888877   667788888888888888888


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccC
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE  272 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  272 (821)
                      ..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  175 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS  175 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence            88888888888888888888888766777888888888888888888654445556888888888888888777778888


Q ss_pred             CCCcC--eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCC---Cchh-hhhhc
Q 041782          273 LKRLE--YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN---LKEF-LDFLN  346 (821)
Q Consensus       273 l~~L~--~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~---l~~~-~~~l~  346 (821)
                      +++|+  .|++++|.+++..+.   .....+|++|++++|.....   .+.......+..+.+....   ...+ +..+.
T Consensus       176 l~~L~~l~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~  249 (606)
T 3t6q_A          176 LQQATNLSLNLNGNDIAGIEPG---AFDSAVFQSLNFGGTQNLLV---IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE  249 (606)
T ss_dssp             TTTCCSEEEECTTCCCCEECTT---TTTTCEEEEEECTTCSCHHH---HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred             hcccceeEEecCCCccCccChh---HhhhccccccccCCchhHHH---HhhhccccchhheechhhccccccccChhHhc
Confidence            88888  788888888865443   23446788888887752110   0000001122222222111   0011 11111


Q ss_pred             CCC--ccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC---Cc
Q 041782          347 DQD--QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP---PE  421 (821)
Q Consensus       347 ~l~--~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~  421 (821)
                      .+.  +|+.|++++|.+.+..+..+..+  ++|++|++++|.++.++..  +..+++|++|++++|.+.+..|..   .+
T Consensus       250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          250 GLCEMSVESINLQKHYFFNISSNTFHCF--SGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGSEEEEEECTTCCCSSCCTTTTTTC--TTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             hhhcCceeEEEeecCccCccCHHHhccc--cCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCchhhhhccC
Confidence            111  56666666666666555556665  6666666666666654432  445566666666666666543322   34


Q ss_pred             ccceeeccCCccCCCCch-hhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782          422 STIHYLVSNNLLTGKLAP-WLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC  498 (821)
Q Consensus       422 ~l~~l~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  498 (821)
                      +++.+++++|.+.+.++. .+..+++|++|++++|.+.+..  |..      +..+++|++|++++|.+.+..|..|..+
T Consensus       326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            555556666655554443 3667777777777777776553  322      3456777777777777776667777777


Q ss_pred             CCCCEEeCCCCcCCcCCch-hhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCC-Ch-hhhhccch
Q 041782          499 TMLEFLDLGNNQIADIFPS-WLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL-PS-KYFQCWNA  575 (821)
Q Consensus       499 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i-p~-~~~~~l~~  575 (821)
                      ++|++|++++|++++..+. .+..+++|++|++++|.+.+..+..+  ..+++|++|++++|++++.. |. ..+     
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~-----  472 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL-----  472 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG-----
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh-----
Confidence            7777777777777766443 36677777777777777776655554  45777777777777776421 10 000     


Q ss_pred             hhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc
Q 041782          576 IKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI  655 (821)
Q Consensus       576 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l  655 (821)
                                                                              ..++.|+.|++++|++++..|..|
T Consensus       473 --------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          473 --------------------------------------------------------QTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             --------------------------------------------------------GGCTTCCEEECTTSCCCEECTTTT
T ss_pred             --------------------------------------------------------ccCCCccEEECCCCccCccChhhh
Confidence                                                                    114458899999999998889999


Q ss_pred             ccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       656 ~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      +++++|++|+|++|++++.+|..|.+++.| +|+|++|++++.+|..+..+++|++|++++|+++|.++.
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999999999999999 999999999998888899999999999999999987764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.6e-55  Score=511.49  Aligned_cols=522  Identities=20%  Similarity=0.278  Sum_probs=334.9

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccc---cceeeCCCCCCEEEEEcCCCCCcccccCC
Q 041782           30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSW---DGVKCNEDTGHVIKLNLTSSCIYGSINSS  106 (821)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~g~~~~~  106 (821)
                      .....|+.||.+||+++.++.-. ......+...+|+.   +.+||.|   +||+|+.. |||++|+|+++++.|.+++ 
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~-~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~-   99 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWS-QQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD-   99 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCC-CCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG-
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcc-cCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh-
Confidence            34457999999999998654210 00011224568987   6899999   99999865 8999999999999999987 


Q ss_pred             cccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecC
Q 041782          107 SSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALA  186 (821)
Q Consensus       107 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~  186 (821)
                       +++++++|++|+|++|.+..+.  ..++.. .....+|. ..+.+|+ +++++|.+.+.+|..+..+  +..+..+++.
T Consensus       100 -~l~~L~~L~~L~Ls~N~~~~~~--~~~~~~-~~~~~~~~-~~~~~l~-l~l~~~~l~~~~~~~~~~~--~~~l~~~~l~  171 (636)
T 4eco_A          100 -AIGQLTELEVLALGSHGEKVNE--RLFGPK-GISANMSD-EQKQKMR-MHYQKTFVDYDPREDFSDL--IKDCINSDPQ  171 (636)
T ss_dssp             -GGGGCTTCCEEESCCGGGGGTC--CSBSTT-SBCTTCCH-HHHHHHH-THHHHHHTCCCGGGGSCHH--HHHHHHHCTT
T ss_pred             -HHhcCccceEEECcCCccccCC--cccccc-ccccCchH-HHHHHHH-hhHHHhhhccCchhhHHHH--HHHHhhcCcc
Confidence             9999999999999999762111  000000 00002222 0145666 7888887777766322211  2222223332


Q ss_pred             CccccccCCccccCCCCCCEEEcc--CCcCCCCcchhhhcCCCCCEEEccCCcCCCC-----------------CccccC
Q 041782          187 NINLIGEFPSWLMNLTQLTYINFD--LNQLTGPIPNWLANLNRLTILSLKSNQLRGY-----------------LPSQIG  247 (821)
Q Consensus       187 ~n~~~~~~p~~l~~l~~L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~  247 (821)
                      ...+.      ......++.+.+.  .|++++ +|..++++++|++|+|++|.+++.                 +|..++
T Consensus       172 ~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          172 QKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             SCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             ccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence            21111      0111222222222  456665 666777777777777777777764                 777777


Q ss_pred             --CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCC-cee-ecccccccCCC------CCCCeEECCCcccceecc
Q 041782          248 --SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN-LSG-NVYIEELLPKL------KSLIVLFLSANNLSLITR  317 (821)
Q Consensus       248 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~l~~l------~~L~~L~L~~n~l~~~~~  317 (821)
                        ++++|++|++++|.+.+.+|..|+++++|++|++++|+ ++| .+|.  .+..+      ++|++|++++|.++    
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~----  318 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLK----  318 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCS----
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCCCcCC----
Confidence              77778888888777777777777777888888888777 665 4443  12222      34444444443333    


Q ss_pred             ccchhccCCCeeEEecCCCCCchhhh--hhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCcc
Q 041782          318 NTVNIRLQNKFVFLGLASCNLKEFLD--FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV  395 (821)
Q Consensus       318 ~~~~~~~~~~L~~L~L~~~~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~  395 (821)
                                            .+|.  .++.+++|++|++++|++.|.+| .+..+  ++|++|++++|.++       
T Consensus       319 ----------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--~~L~~L~L~~N~l~-------  366 (636)
T 4eco_A          319 ----------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--IKLASLNLAYNQIT-------  366 (636)
T ss_dssp             ----------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--EEESEEECCSSEEE-------
T ss_pred             ----------------------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--CCCCEEECCCCccc-------
Confidence                                  3333  45555666666666666665555 44444  44444444444443       


Q ss_pred             ccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCC-CcEEEcCCCcCcccCCccccCcccccCC
Q 041782          396 VLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNS-LRVLDLSHNFLSGVLPQCLSNSKIFKNA  474 (821)
Q Consensus       396 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~~~~~~~l  474 (821)
                                                              .+|..+..+++ |++|++++|+++ .+|..+..    ..+
T Consensus       367 ----------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~----~~l  401 (636)
T 4eco_A          367 ----------------------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA----KSV  401 (636)
T ss_dssp             ----------------------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT----TCS
T ss_pred             ----------------------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhh----ccc
Confidence                                                    23334555555 666666666666 45544322    113


Q ss_pred             CcccEEeccCccccccCchhhc-------CCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCcc--
Q 041782          475 TNLKMIDLSHNLLQGRIPRSLA-------NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG--  545 (821)
Q Consensus       475 ~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--  545 (821)
                      ++|++|++++|.+++..|..+.       .+++|++|++++|+++...+..+..+++|++|+|++|+++ .+|.....  
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            3666667777766666666665       5667777777777777655555556777777777777777 45543311  


Q ss_pred             ----CCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEE
Q 041782          546 ----FVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM  621 (821)
Q Consensus       546 ----~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (821)
                          ..+++|++|+|++|+++ .+|..++.                                                  
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------------------  509 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------------------------------------  509 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------------------------
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhh--------------------------------------------------
Confidence                11238889999999887 67754210                                                  


Q ss_pred             EecceeeecccccccccEEEcccccccCccccccccCCCCCEEeC------CCcccCcchhhhhcCccCCCeEeCCCCcc
Q 041782          622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNL------SGNNLLGHIPSSLGNLTVLESLDLSNNNL  695 (821)
Q Consensus       622 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  695 (821)
                                ..++.|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..++++++|++|+|++|++
T Consensus       510 ----------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          510 ----------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             ----------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             ----------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence                      013348889999999987 8888999999999999      56888999999999999999999999999


Q ss_pred             cccCCCCccccCCccEEEcccCcccc
Q 041782          696 SGEIPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       696 ~~~~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                       +.+|..+.  ++|++||+++|++..
T Consensus       579 -~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          579 -RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             -CccCHhHh--CcCCEEECcCCCCcc
Confidence             68888766  799999999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-52  Score=489.65  Aligned_cols=513  Identities=21%  Similarity=0.154  Sum_probs=264.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      ++|++|+|++|.+.+  +|..            .+.++++|++|+|++|.+++..|   ..+.++++|++|++++|.+.+
T Consensus        32 ~~l~~L~Ls~n~l~~--~~~~------------~~~~l~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI--LKSY------------SFSNFSELQWLDLSRCEIETIED---KAWHGLHHLSNLILTGNPIQS   94 (606)
T ss_dssp             TTCCEEECTTSCCCE--ECTT------------TTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCC
T ss_pred             CCcCEEECCCCCcCE--eChh------------hccCCccCcEEeCCCCcccccCH---HHhhchhhcCEeECCCCcccc
Confidence            556666666665542  2221            05556666666666666655555   444555555555555555555


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSIS  271 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  271 (821)
                      ..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..++
T Consensus        95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  174 (606)
T 3vq2_A           95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ  174 (606)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred             cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence            555555555555555555555554444555555555555555555553 3455555555555555555555554454454


Q ss_pred             CCCCcC----eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhh
Q 041782          272 ELKRLE----YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFL  345 (821)
Q Consensus       272 ~l~~L~----~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l  345 (821)
                      .+++|+    +|++++|.++                          .+++..+.   ..+|+.|++++|.+  ..+|..+
T Consensus       175 ~l~~L~~~l~~L~l~~n~l~--------------------------~~~~~~~~---~~~L~~L~L~~n~~~~~~~~~~~  225 (606)
T 3vq2_A          175 FLRENPQVNLSLDMSLNPID--------------------------FIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCL  225 (606)
T ss_dssp             HHHHCTTCCCEEECTTCCCC--------------------------EECTTTTT---TCEEEEEEEESCCSCHHHHHHHH
T ss_pred             hhhccccccceeeccCCCcc--------------------------eeCccccc---CceeeeeeccCCccchhHHHHHh
Confidence            444433    4555555554                          44333321   12445555555544  2445555


Q ss_pred             cCCCccceEecccCCCCCC------CCcchhccCCCCeeEEEc-CCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782          346 NDQDQLELLDLSANKIPGK------IPGWLLNVTTGNLQFVNL-SYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI  418 (821)
Q Consensus       346 ~~l~~L~~L~Ls~n~l~~~------~p~~l~~~~~~~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  418 (821)
                      ..++.++.+++..+.+.+.      .+..+..+....++.+++ ..+.+.+..+.  +..+++|++|++++|.+......
T Consensus       226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l  303 (606)
T 3vq2_A          226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDV  303 (606)
T ss_dssp             HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCC
T ss_pred             ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhc
Confidence            5555555555543332211      111111111123444555 44444444443  44455555555555555432211


Q ss_pred             C-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc--Cchhh
Q 041782          419 P-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR--IPRSL  495 (821)
Q Consensus       419 ~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~  495 (821)
                      . ..+++.+++++|.+ +.+|. + .+++|++|++++|+..+.+        .+..+++|++|++++|.+++.  .|..+
T Consensus       304 ~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~l~~~~~~~~~~  372 (606)
T 3vq2_A          304 PKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--------KKVALPSLSYLDLSRNALSFSGCCSYSD  372 (606)
T ss_dssp             CTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--------CCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred             cccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--------hhccCCCCCEEECcCCccCCCcchhhhh
Confidence            1 33555555555555 44552 3 5666666666666443332        123456666666666666544  25556


Q ss_pred             cCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCC-CCCccCCCCCCcEEEccCCcCccCCChhhhhccc
Q 041782          496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG-EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWN  574 (821)
Q Consensus       496 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~  574 (821)
                      ..+++|++|++++|.+++. |..+..+++|++|++++|++.+..+ ..+  ..+++|++|++++|.+++..|.. +..++
T Consensus       373 ~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~l~  448 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGI-FLGLT  448 (606)
T ss_dssp             HCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEECCTTT-TTTCT
T ss_pred             ccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCccchhh-hcCCC
Confidence            6666666666666666553 3555566666666666666655444 222  44566666666666665544432 33333


Q ss_pred             hhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccc
Q 041782          575 AIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS  654 (821)
Q Consensus       575 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~  654 (821)
                      +|+.++++.+.....                                    ........++.|+.|++++|++++..|..
T Consensus       449 ~L~~L~l~~n~l~~~------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDN------------------------------------TLSNVFANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             TCCEEECTTCEEGGG------------------------------------EECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCEEECCCCcCCCc------------------------------------chHHhhccCCCCCEEECCCCcCCccChhh
Confidence            222222221110000                                    00000001234666666666666666666


Q ss_pred             cccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccC-CccEEEcccCcccccCCC
Q 041782          655 ISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT-SLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       655 l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~  725 (821)
                      ++++++|++|+|++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|++|++++|++.+.+|.
T Consensus       493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            666666666666666666666666666666666666666666 4455566665 466666666666665553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-51  Score=480.10  Aligned_cols=526  Identities=20%  Similarity=0.205  Sum_probs=425.4

Q ss_pred             ccceeeCCC---------CCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCC
Q 041782           77 WDGVKCNED---------TGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSL  147 (821)
Q Consensus        77 w~gv~C~~~---------~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l  147 (821)
                      +..+.|...         ...++.|+|+++.+++..+.  ++.++++|++|+|++|.+.. ..|..             +
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~-~~~~~-------------~   77 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYW-IHEDT-------------F   77 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCE-ECTTT-------------T
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChh--HhccCccceEEECCCCccce-eChhh-------------c
Confidence            455778542         24789999999999987665  89999999999999999863 23444             8


Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCC
Q 041782          148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR  227 (821)
Q Consensus       148 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  227 (821)
                      +++++|++|+|++|.+++..|   ..++++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+..+++
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  154 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAE---TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK  154 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECT---TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred             cCccccCeeeCCCCcccccCh---hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence            999999999999999999888   77889999999999999998877788999999999999999999754445556999


Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCC--EEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782          228 LTILSLKSNQLRGYLPSQIGSLTQLT--ALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL  305 (821)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  305 (821)
                      |++|++++|.+++..|..++.+++|+  +|++++|.+++..|..+. ..+|++|++++|....     ..+..+..++..
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~-----~~~~~l~~~~l~  228 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLL-----VIFKGLKNSTIQ  228 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHH-----HHHHHTTTCEEE
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHH-----HHhhhccccchh
Confidence            99999999999988889999999999  999999999987777654 4789999999986221     223344443333


Q ss_pred             ECCCcccc-----eeccccchhccCCCeeEEecCCCCCchhhh-hhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782          306 FLSANNLS-----LITRNTVNIRLQNKFVFLGLASCNLKEFLD-FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF  379 (821)
Q Consensus       306 ~L~~n~l~-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~  379 (821)
                      .+....+.     .+....+......+++.+++++|.+..++. .+..+++|++|++++|+++ .+|..+..+  ++|++
T Consensus       229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l--~~L~~  305 (606)
T 3t6q_A          229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL--STLKK  305 (606)
T ss_dssp             EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC--TTCCE
T ss_pred             heechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccc--ccCCE
Confidence            32222111     111222221122378888888888865544 4778888888888888887 677777777  78888


Q ss_pred             EEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCC----CcccceeeccCCccCCCC--chhhhCCCCCcEEEcC
Q 041782          380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP----PESTIHYLVSNNLLTGKL--APWLCNLNSLRVLDLS  453 (821)
Q Consensus       380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~l~l~~n~~~~~~--~~~l~~l~~L~~L~Ls  453 (821)
                      |++++|.+++..+. .+..+++|++|++++|.+.+.++..    ..+++.+++++|.+.+..  +..+..+++|++|+++
T Consensus       306 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  384 (606)
T 3t6q_A          306 LVLSANKFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS  384 (606)
T ss_dssp             EECTTCCCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred             EECccCCcCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence            88888888877654 4567788888888888887665543    567888888888887765  7788999999999999


Q ss_pred             CCcCcccCCccccCcccccCCCcccEEeccCccccccCch-hhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccC
Q 041782          454 HNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPR-SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF  532 (821)
Q Consensus       454 ~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  532 (821)
                      +|++.+..|..+      ..+++|++|++++|.+++..+. .+..+++|++|++++|++++..|..++.+++|++|++++
T Consensus       385 ~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          385 YNEPLSLKTEAF------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             SCSCEEECTTTT------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CCcCCcCCHHHh------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            999998877654      4589999999999999877654 489999999999999999999999999999999999999


Q ss_pred             CcCccc-CCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccccc
Q 041782          533 NRFHGE-IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSL  611 (821)
Q Consensus       533 N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  611 (821)
                      |++.+. ++.......+++|++|++++|++++..|.. |..                                       
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~---------------------------------------  498 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTS---------------------------------------  498 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTT---------------------------------------
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhh-hcc---------------------------------------
Confidence            999863 333333467999999999999998655532 221                                       


Q ss_pred             ceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCC
Q 041782          612 QYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLS  691 (821)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  691 (821)
                                            ++.|+.|+|++|++++..|..+.+++.| +|+|++|++++.+|..++.+++|++|+++
T Consensus       499 ----------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          499 ----------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             ----------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             ----------------------ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence                                  3448999999999999999999999999 99999999999999999999999999999


Q ss_pred             CCcccccCC
Q 041782          692 NNNLSGEIP  700 (821)
Q Consensus       692 ~N~l~~~~p  700 (821)
                      +|++.+..+
T Consensus       556 ~N~~~c~c~  564 (606)
T 3t6q_A          556 QNPLDCTCS  564 (606)
T ss_dssp             TCCEECSGG
T ss_pred             CCCccccCC
Confidence            999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-52  Score=495.01  Aligned_cols=260  Identities=21%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCC--CCCCC--ccc------------cceeeCCCCCCEEE
Q 041782           28 HQLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEE--EDRDC--CSW------------DGVKCNEDTGHVIK   91 (821)
Q Consensus        28 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~   91 (821)
                      .+.+..+|+.||++||+++.++              +|+.+.  ...+|  |.|            .||+|+. .+||++
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~  327 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTG  327 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEE
Confidence            3456678999999999999532              575421  01344  999            9999986 589999


Q ss_pred             EEcCCCCCcccccCCcccccCCCCCEEeC-CCCCCCCCCCCcccccc----C-------------CCcccCCCCCCCCCC
Q 041782           92 LNLTSSCIYGSINSSSSLFHLRHLEWLSL-ADNNFNYSKIPSEIMNL----S-------------SFSGQVPSLGNLTKL  153 (821)
Q Consensus        92 L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~~~~l----~-------------~~~~~ip~l~~l~~L  153 (821)
                      |+|+++++.|.+|+  ++++|++|++||| ++|.+.+. .|-.....    +             .+....+. ..+..+
T Consensus       328 L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~-~~~s~l  403 (876)
T 4ecn_A          328 LSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR-LNLSDL  403 (876)
T ss_dssp             EECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG-GGSCHH
T ss_pred             EECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcc-hhhhHH
Confidence            99999999999987  9999999999999 88877653 22110000    0             00000000 000000


Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC--ccccccCCccccCCCCCCEEEccCCcCCC---------------
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALAN--INLIGEFPSWLMNLTQLTYINFDLNQLTG---------------  216 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~---------------  216 (821)
                      ..-.+..+  ....+   ........++.+.+..  |.+.+ +|..|+++++|++|+|++|.+++               
T Consensus       404 ~~~~l~~~--~~~~~---i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~  477 (876)
T 4ecn_A          404 LQDAINRN--PEMKP---IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA  477 (876)
T ss_dssp             HHHHHHTC--TTSCC---CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHhhhC--ccccc---cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence            00000000  00000   0001122233333332  55555 66666666666667766666665               


Q ss_pred             --Ccchhhh--cCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCC-CCCccccCCC-------CcCeecccc
Q 041782          217 --PIPNWLA--NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQG-PVPSSISELK-------RLEYLDLHS  283 (821)
Q Consensus       217 --~~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~  283 (821)
                        .+|..++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++       +|++|++++
T Consensus       478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~  557 (876)
T 4ecn_A          478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY  557 (876)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred             cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence              2666655  77777777777777666777777777777777777776 665 5665555444       777777777


Q ss_pred             CCceeecccccccCCCCCCCeEECCCcccc
Q 041782          284 NNLSGNVYIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       284 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                      |.++ .+|....+.++++|++|++++|.++
T Consensus       558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             SCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            7766 3332114666666666666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-51  Score=497.40  Aligned_cols=523  Identities=23%  Similarity=0.232  Sum_probs=340.8

Q ss_pred             cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC-CCCchhccCCCCCCEEecCCcc
Q 041782          111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH-SASFSWIAKQTELSWLALANIN  189 (821)
Q Consensus       111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~l~~L~~L~L~~n~  189 (821)
                      -.++|++|||++|.+++. .|..             +.++++|++|+|++|.+.+.+ |   ..+.++++|++|+|++|.
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~-------------~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASS-------------FPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSS-------------CSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTCC
T ss_pred             CCCCcCEEECCCCcCCcc-ChhH-------------CcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCCc
Confidence            457788888888777531 2333             677778888888877555443 4   556777778888888887


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCCCCcchh--hhcCCCCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCccCCCCC
Q 041782          190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNW--LANLNRLTILSLKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPV  266 (821)
Q Consensus       190 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~  266 (821)
                      +.+..|..|.++++|++|+|++|.+++.+|..  |+++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            77777777777888888888888777655554  7777788888888877776544 46777788888888887777777


Q ss_pred             CccccCC--CCcCeeccccCCceeecccccccCCCCC------CCeEECCCcccceeccccchh-ccCCCeeEEecCCCC
Q 041782          267 PSSISEL--KRLEYLDLHSNNLSGNVYIEELLPKLKS------LIVLFLSANNLSLITRNTVNI-RLQNKFVFLGLASCN  337 (821)
Q Consensus       267 p~~l~~l--~~L~~L~L~~n~l~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~~~  337 (821)
                      +..+..+  ++|+.|++++|.+.+..+.  .+..+.+      |++|++++|.++...+..+.. ....++..+.+..+.
T Consensus       165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          165 EHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             SGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             HHHcccccCCccceEECCCCcccccccc--chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            7777666  7777777777777664443  1333332      666666666655433332210 011223333332221


Q ss_pred             CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782          338 LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP  417 (821)
Q Consensus       338 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  417 (821)
                      .+.              ++..+.+.+..+..+..+..++|+.|++++|.+++..+. .+..+++|++|++++|++.+..+
T Consensus       243 ~~~--------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          243 MGA--------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             CBC--------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECT
T ss_pred             ccc--------------cccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCCh
Confidence            110              011222332333334443336788888888888776654 45667788888888887776544


Q ss_pred             CC---CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh
Q 041782          418 IP---PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS  494 (821)
Q Consensus       418 ~~---~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~  494 (821)
                      ..   ..+++.+++++|.+.+..+..+..+++|++|++++|++.+..+..      |.++++|++|++++|.+++.    
T Consensus       308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~------~~~l~~L~~L~Ls~N~l~~i----  377 (844)
T 3j0a_A          308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT------FKFLEKLQTLDLRDNALTTI----  377 (844)
T ss_dssp             TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC------SCSCCCCCEEEEETCCSCCC----
T ss_pred             HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh------hcCCCCCCEEECCCCCCCcc----
Confidence            32   345566666666666555556666666666666666665443332      33455666666666665521    


Q ss_pred             hcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccc
Q 041782          495 LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWN  574 (821)
Q Consensus       495 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~  574 (821)
                       ..+++|+.|++++|+++.. |.   ...+++.|++++|++.+. +.......+++|++|+|++|++++..+...     
T Consensus       378 -~~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----  446 (844)
T 3j0a_A          378 -HFIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQT-----  446 (844)
T ss_dssp             -SSCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSS-TTHHHHTTCTTCCEEEEESCCCCCCCSSSS-----
T ss_pred             -cCCCCcchhccCCCCcccc-cc---cccccceeecccCccccC-chhhhhhcCCccceeeCCCCcccccccccc-----
Confidence             1255566666666666543 22   134556666666665532 111111245566666666666553221100     


Q ss_pred             hhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEccccccc-----C
Q 041782          575 AIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-----G  649 (821)
Q Consensus       575 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~  649 (821)
                                                                              ....+.|+.|+|++|.++     +
T Consensus       447 --------------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~  470 (844)
T 3j0a_A          447 --------------------------------------------------------PSENPSLEQLFLGENMLQLAWETE  470 (844)
T ss_dssp             --------------------------------------------------------SCSCTTCCBCEEESCCCSSSCCSC
T ss_pred             --------------------------------------------------------cccCCccccccCCCCccccccccc
Confidence                                                                    001345899999999997     4


Q ss_pred             ccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCC
Q 041782          650 KIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF  729 (821)
Q Consensus       650 ~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  729 (821)
                      ..|..|.++++|++|+|++|++++.+|..|+++++|+.|+|++|++++..|..+.  ++|++||+++|++++.+|..  |
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~  546 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--F  546 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--C
T ss_pred             cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--h
Confidence            5567799999999999999999999999999999999999999999988887776  89999999999999988854  5


Q ss_pred             CCCCCCccCCCCCCCCCCC
Q 041782          730 NTFENSSFEGNPGLCGKPL  748 (821)
Q Consensus       730 ~~~~~~~~~gn~~lc~~~~  748 (821)
                      ..+....+.|||+.|++++
T Consensus       547 ~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          547 VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             SSCCEEEEEEECCCCSSSC
T ss_pred             CCcCEEEecCCCccccccc
Confidence            6777888999999998875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.8e-50  Score=467.68  Aligned_cols=531  Identities=17%  Similarity=0.113  Sum_probs=384.2

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL  233 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  233 (821)
                      ++++.+++.++..+.    .+  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        14 ~~~~c~~~~l~~ip~----~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPD----DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TEEECTTSCCSSCCT----TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CceEccCCCcccCCC----CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence            455555555544322    11  145555556555555555555666666666666666666555555666666666666


Q ss_pred             cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCcee-ecccccccCCCCCCCeEECCCccc
Q 041782          234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSG-NVYIEELLPKLKSLIVLFLSANNL  312 (821)
Q Consensus       234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~l~~l~~L~~L~L~~n~l  312 (821)
                      ++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|  ..+.++++|++|++++|.+
T Consensus        88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp--~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP--AYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC--GGGGTCTTCCEEECCSSCC
T ss_pred             CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech--HhHhhcCCCCEEEccCCcc
Confidence            6666665556666666666666666666665554556666666666666666553 122  3356666666666666666


Q ss_pred             ceeccccch-hccCC-CeeEEecCCCCCchhhhhhcCCCccceEecccCCCC-CCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782          313 SLITRNTVN-IRLQN-KFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIP-GKIPGWLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       313 ~~~~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                      +++.+..+. ...++ .+..+++++|.+..++.......+|+.|++++|.+. +..|..+.++  +.++.+++..+.+.+
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l--~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL--AGLHVHRLILGEFKD  243 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTT--TTCEEEEEEEECCTT
T ss_pred             eecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccc--ccccccccccccccc
Confidence            665554432 11122 255899999999888776666669999999999887 4566677777  788888886655443


Q ss_pred             CCCC-----cccccc--CCccEEEe-ccCcccCcCCCC--CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcc
Q 041782          390 FDRG-----SVVLLW--TDLVTLDL-RSNKLQGPLPIP--PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG  459 (821)
Q Consensus       390 ~~~~-----~~~~~~--~~L~~L~L-~~n~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  459 (821)
                      ....     .....+  -.++.+++ ..+.+.+.+|..  ..+++.+++++|.+.. +| .+..+++|++|++++|.+ +
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~  320 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-K  320 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-S
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-c
Confidence            2211     011111  24667777 667777766653  5689999999999864 55 788999999999999999 6


Q ss_pred             cCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC--CchhhCCCCCCCEEEccCCcCcc
Q 041782          460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI--FPSWLGTLPELKVLMLQFNRFHG  537 (821)
Q Consensus       460 ~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~  537 (821)
                      .+|..        .+++|++|++++|...+..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+.+
T Consensus       321 ~lp~~--------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  390 (606)
T 3vq2_A          321 QFPTL--------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII  390 (606)
T ss_dssp             SCCCC--------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred             ccccC--------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence            77732        4799999999999765444  677999999999999999887  47889999999999999999885


Q ss_pred             cCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeee
Q 041782          538 EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAY  617 (821)
Q Consensus       538 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  617 (821)
                       +|..+  ..+++|+.|++++|++++..|...+..+++|+.++++.+......+                          
T Consensus       391 -~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------  441 (606)
T 3vq2_A          391 -MSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--------------------------  441 (606)
T ss_dssp             -ECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT--------------------------
T ss_pred             -chhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch--------------------------
Confidence             45444  6799999999999999987775668888888888777554322111                          


Q ss_pred             eEEEEecceeeecccccccccEEEcccccccC-ccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc
Q 041782          618 SITMVNKGIEMNYGKVSNFLTGIILSNNKLIG-KIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS  696 (821)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  696 (821)
                                 .....++.|+.|++++|++++ .+|..++++++|++|+|++|++++.+|..|+++++|++|+|++|+++
T Consensus       442 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          442 -----------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             -----------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence                       001124669999999999998 47899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCccccCCccEEEcccCcccccCCCC-CCCC-CCCCCccCCCCCCCCCCC
Q 041782          697 GEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFN-TFENSSFEGNPGLCGKPL  748 (821)
Q Consensus       697 ~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lc~~~~  748 (821)
                      +.+|..|..+++|++|++++|+++ .+|.. ..+. ++....+.|||+.|+++.
T Consensus       511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999999999999 56765 2232 366778899999998765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-47  Score=439.96  Aligned_cols=492  Identities=21%  Similarity=0.198  Sum_probs=318.0

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      ++++|+|++|.+++..+   ..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             cccEEEccCCccCccCh---hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            34444444444444443   333444444444444444444444445555555555555555544444455555555555


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCC-CCCccccCCCCcCeeccccCCceeecccccccCCCCCC----CeEE
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL----IVLF  306 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L----~~L~  306 (821)
                      ++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+  ..+..+++|    +.|+
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~~~~L~  183 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLD  183 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTCCCEEE
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH--HHccchhccchhhhhcc
Confidence            555555544333345555555555555555543 234555555555555555555543221  123334444    4555


Q ss_pred             CCCcccceeccccchhccCCCeeEEecCCCCC--chhhhhhcCCCccceEecccCCCCC------CCCcchhccCCCCee
Q 041782          307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNL--KEFLDFLNDQDQLELLDLSANKIPG------KIPGWLLNVTTGNLQ  378 (821)
Q Consensus       307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l--~~~~~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~~~~~~L~  378 (821)
                      +++|.++.+.+..+.   ..+|+.+++++|..  ..++..+..++.++.+++....+..      .....+..+..-.++
T Consensus       184 l~~n~l~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          184 LSLNPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             CTTCCCCEECTTTTT---TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             cCCCCceecCHHHhc---cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            555555555444432   22455555555533  3455556666666555544322211      111122222112455


Q ss_pred             EEEcCCC-CCCCCCCCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCc
Q 041782          379 FVNLSYN-LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF  456 (821)
Q Consensus       379 ~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  456 (821)
                      .++++++ .+.+..+. .+..+++|++|++++|.+.+..+.. ..+++.+++++|.+. .+|.  ..+++|++|++++|.
T Consensus       261 ~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          261 EFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred             hhhhhcchhhhhhchh-hhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence            6666665 44444433 3455667777777777666422111 116667777777766 4454  467899999999999


Q ss_pred             CcccCCccccCcccccCCCcccEEeccCccccccC--chhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCc
Q 041782          457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI--PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNR  534 (821)
Q Consensus       457 l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~  534 (821)
                      +.+..+.        ..+++|++|++++|.+++..  |..+..+++|++|++++|++++..+. +..+++|++|++++|.
T Consensus       337 ~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          337 GGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             SCCBCCC--------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred             ccccccc--------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence            8876554        34789999999999988654  77889999999999999999887555 8899999999999999


Q ss_pred             CcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccccccee
Q 041782          535 FHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYI  614 (821)
Q Consensus       535 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  614 (821)
                      +.+..+.. ....+++|++|++++|.+++..|.. +..                                          
T Consensus       408 l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~------------------------------------------  443 (570)
T 2z63_A          408 LKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGI-FNG------------------------------------------  443 (570)
T ss_dssp             EESCTTSC-TTTTCTTCCEEECTTSCCEECCTTT-TTT------------------------------------------
T ss_pred             cccccchh-hhhcCCCCCEEeCcCCcccccchhh-hhc------------------------------------------
Confidence            98765522 2266899999999999998665532 211                                          


Q ss_pred             eeeeEEEEecceeeecccccccccEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCC
Q 041782          615 YAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNN  693 (821)
Q Consensus       615 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  693 (821)
                                         ++.|+.|++++|.++ +.+|..++.+++|++|+|++|++++..|..|+++++|++|++++|
T Consensus       444 -------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          444 -------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             -------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence                               345899999999998 689999999999999999999999988999999999999999999


Q ss_pred             cccccCCCCccccCCccEEEcccCcccccCCCCC
Q 041782          694 NLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK  727 (821)
Q Consensus       694 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  727 (821)
                      ++++..|..|..+++|++|++++|+++|.+|...
T Consensus       505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             cCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            9999988899999999999999999999998754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.7e-48  Score=449.19  Aligned_cols=501  Identities=21%  Similarity=0.233  Sum_probs=362.3

Q ss_pred             CccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 041782           74 CCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKL  153 (821)
Q Consensus        74 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L  153 (821)
                      .|.|.|+ |+...          ++++ .+|.  .+.  ++|++|+|++|.+++. .|..             +.++++|
T Consensus         3 ~C~~~~~-c~~~~----------~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~-------------~~~l~~L   52 (549)
T 2z81_A            3 SCDASGV-CDGRS----------RSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGD-------------LRACANL   52 (549)
T ss_dssp             EECTTSE-EECTT----------SCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSST-------------TSSCTTC
T ss_pred             cCCCCce-EECCC----------Cccc-cccc--cCC--CCccEEECcCCccCcc-Chhh-------------hhcCCcc
Confidence            4999999 96542          2332 3343  332  7899999999988531 2333             7888899


Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEE
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILS  232 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~  232 (821)
                      ++|+|++|++++..|   ..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+++ ..|..++++++|++|+
T Consensus        53 ~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           53 QVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             CEEECTTSCCCEECT---TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             cEEECCCCCcCccCh---hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            999999999988887   667788889999999998887777778889999999999998886 3567788888999999


Q ss_pred             ccCCcCCCCCc-cccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          233 LKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       233 Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      +++|.+.+.+| ..|.++++|++|++++|.+++..|..++++++|++|+++.|.+.. ++. ..+..+++|++|++++|.
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~-~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLE-IFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHH-HHHHSTTTBSEEEEESCB
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cch-hhHhhcccccEEEccCCc
Confidence            98888444444 678888889999999988888888888888889999888887652 222 334568888888888888


Q ss_pred             cceeccccch-hccCCCeeEEecCCCCCc-----hhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCC
Q 041782          312 LSLITRNTVN-IRLQNKFVFLGLASCNLK-----EFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYN  385 (821)
Q Consensus       312 l~~~~~~~~~-~~~~~~L~~L~L~~~~l~-----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n  385 (821)
                      +++....... ...+++|+.|++++|.+.     .++..+..+++|+.+++++|.+.+.....  .              
T Consensus       208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~--~--------------  271 (549)
T 2z81_A          208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN--P--------------  271 (549)
T ss_dssp             CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC--C--------------
T ss_pred             cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc--c--------------
Confidence            7765321110 112445555555555441     12223334444555555544433211000  0              


Q ss_pred             CCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccc
Q 041782          386 LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCL  465 (821)
Q Consensus       386 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l  465 (821)
                           ........+.+++.|++.++.+....                ....++..+...++|++|++++|++. .+|..+
T Consensus       272 -----~~~~~~~~l~~L~~L~l~~~~i~~~~----------------~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~  329 (549)
T 2z81_A          272 -----SESDVVSELGKVETVTIRRLHIPQFY----------------LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF  329 (549)
T ss_dssp             -----CTTTCCCCCTTCCEEEEESCBCSCGG----------------GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred             -----cchhhhhhhcccccccccccccchhh----------------hcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence                 00001234567888888777654211                01123334455678999999999886 555443


Q ss_pred             cCcccccCCCcccEEeccCccccccCch---hhcCCCCCCEEeCCCCcCCcCCc--hhhCCCCCCCEEEccCCcCcccCC
Q 041782          466 SNSKIFKNATNLKMIDLSHNLLQGRIPR---SLANCTMLEFLDLGNNQIADIFP--SWLGTLPELKVLMLQFNRFHGEIG  540 (821)
Q Consensus       466 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~  540 (821)
                           +.++++|++|++++|.+++.+|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|
T Consensus       330 -----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  403 (549)
T 2z81_A          330 -----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP  403 (549)
T ss_dssp             -----HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred             -----HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence                 23478899999999999877653   36788999999999999987643  56888999999999999988 566


Q ss_pred             CCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEE
Q 041782          541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT  620 (821)
Q Consensus       541 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  620 (821)
                      ..+  ..+++|++|++++|+++ .+|...                                                   
T Consensus       404 ~~~--~~~~~L~~L~Ls~N~l~-~l~~~~---------------------------------------------------  429 (549)
T 2z81_A          404 DSC--QWPEKMRFLNLSSTGIR-VVKTCI---------------------------------------------------  429 (549)
T ss_dssp             SCC--CCCTTCCEEECTTSCCS-CCCTTS---------------------------------------------------
T ss_pred             hhh--cccccccEEECCCCCcc-cccchh---------------------------------------------------
Confidence            655  56889999999999986 344210                                                   


Q ss_pred             EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCC
Q 041782          621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIP  700 (821)
Q Consensus       621 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  700 (821)
                                   .+.|+.|++++|++++.+    .++++|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|
T Consensus       430 -------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          430 -------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             -------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred             -------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence                         124889999999998753    57899999999999999 6776 4789999999999999999999


Q ss_pred             CCccccCCccEEEcccCcccccCCCC
Q 041782          701 RQLAELTSLAVFDVSDNNLTGQIPQG  726 (821)
Q Consensus       701 ~~l~~l~~L~~L~ls~N~l~g~iP~~  726 (821)
                      ..+..+++|++|++++|+++|.+|..
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          491 GIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             TGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             HHHhcCcccCEEEecCCCccCCCccH
Confidence            99999999999999999999988843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.5e-46  Score=431.11  Aligned_cols=498  Identities=23%  Similarity=0.208  Sum_probs=334.9

Q ss_pred             CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782           88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH  167 (821)
Q Consensus        88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~  167 (821)
                      +++.|+|+++.+++..+.  ++.++++|++|+|++|.+.+  ++...            ++++++|++|+|++|.+++..
T Consensus        29 ~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~--i~~~~------------~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGA------------YQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             SCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEEC
T ss_pred             cccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCc--cCccc------------ccCchhCCEEeCcCCcCCccC
Confidence            566677777766655443  66667777777777776642  22211            566667777777777766666


Q ss_pred             CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782          168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQI  246 (821)
Q Consensus       168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  246 (821)
                      |   ..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..+
T Consensus        93 ~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~  169 (570)
T 2z63_A           93 L---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (570)
T ss_dssp             T---TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred             H---hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence            5   455666677777777776655444456667777777777776665 356666777777777777777666656666


Q ss_pred             CCCCCC----CEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchh
Q 041782          247 GSLTQL----TALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNI  322 (821)
Q Consensus       247 ~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  322 (821)
                      +.+++|    ++|++++|.+++..|..+... +|++|++++|...... .+..+..++.++.+.+....+....      
T Consensus       170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~-~~~~~~~l~~l~~~~l~~~~~~~~~------  241 (570)
T 2z63_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEG------  241 (570)
T ss_dssp             HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH-HHHHHHTTTTCEEEEEEEEECCCCS------
T ss_pred             cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc-hhhhhcCccccceeeeccccccCch------
Confidence            666666    667777776666555555544 5667766666433211 1133445555555444322211100      


Q ss_pred             ccCCCeeEEecCCCCCchhhhhhcCCCccceEecccC-CCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCC
Q 041782          323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSAN-KIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD  401 (821)
Q Consensus       323 ~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  401 (821)
                          .++.  +....+.    .+..+ .++.++++++ .+.+..|..+..+  ++|++|++++|.+++.+..  ...+ +
T Consensus       242 ----~l~~--~~~~~~~----~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~l~~~--~~~~-~  305 (570)
T 2z63_A          242 ----NLEK--FDKSALE----GLCNL-TIEEFRLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIERVKDF--SYNF-G  305 (570)
T ss_dssp             ----SCEE--CCTTTTG----GGGGS-EEEEEEEEETTEEESCSTTTTGGG--TTCSEEEEESCEECSCCBC--CSCC-C
T ss_pred             ----hhhh--cchhhhc----ccccc-chhhhhhhcchhhhhhchhhhcCc--CcccEEEecCccchhhhhh--hccC-C
Confidence                0000  0000000    11111 2445555555 4455555555555  5666666666666544332  2333 6


Q ss_pred             ccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccE
Q 041782          402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKM  479 (821)
Q Consensus       402 L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~  479 (821)
                      |++|++++|.+.........+++.+++++|.+.+..+.  ..+++|++|++++|++++..  |.      .+.++++|++
T Consensus       306 L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~~~L~~  377 (570)
T 2z63_A          306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQ------SDFGTTSLKY  377 (570)
T ss_dssp             CSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEH------HHHTCSCCCE
T ss_pred             ccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccc------cccccCccCE
Confidence            66666666666533333355666666666666655554  67899999999999998653  33      3456899999


Q ss_pred             EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccC
Q 041782          480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSH  558 (821)
Q Consensus       480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~  558 (821)
                      |++++|.+.+..+ .+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+  ..+++|++|++++
T Consensus       378 L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~  454 (570)
T 2z63_A          378 LDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAG  454 (570)
T ss_dssp             EECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTT
T ss_pred             EECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcC
Confidence            9999999986544 49999999999999999998766 578899999999999999998877766  6789999999999


Q ss_pred             CcCc-cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccc
Q 041782          559 NRFS-GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFL  637 (821)
Q Consensus       559 N~l~-g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  637 (821)
                      |.++ +.+|.. +.                                                             .++.|
T Consensus       455 n~l~~~~~p~~-~~-------------------------------------------------------------~l~~L  472 (570)
T 2z63_A          455 NSFQENFLPDI-FT-------------------------------------------------------------ELRNL  472 (570)
T ss_dssp             CEEGGGEECSC-CT-------------------------------------------------------------TCTTC
T ss_pred             CcCccccchhh-hh-------------------------------------------------------------cccCC
Confidence            9987 455532 11                                                             13458


Q ss_pred             cEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCC
Q 041782          638 TGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPR  701 (821)
Q Consensus       638 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  701 (821)
                      +.|++++|++++..|..|+++++|++|+|++|++++.+|..|+++++|++|++++|++++..|.
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            9999999999998899999999999999999999999889999999999999999999988775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.2e-45  Score=421.83  Aligned_cols=469  Identities=21%  Similarity=0.215  Sum_probs=369.7

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP  166 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~  166 (821)
                      .+++.|+|+++.+++..+.  ++.++++|++|+|++|.+.+. .|..             ++++++|++|+|++|.+++.
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~-------------~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDA-------------FYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTT-------------TTTCTTCCEEECTTSCCCSC
T ss_pred             CCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-Chhh-------------ccccccCCEEECCCCccCcc
Confidence            5799999999999887665  899999999999999998631 2233             88999999999999999998


Q ss_pred             CCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCEEEccCCcCCCCCcc
Q 041782          167 HSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTILSLKSNQLRGYLPS  244 (821)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~  244 (821)
                      .+   ..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..|.
T Consensus        90 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           90 SS---SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CH---HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CH---HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            87   678999999999999999986 467889999999999999999555554 6899999999999999999999999


Q ss_pred             ccCCCCCCCEEEccCccCCCCCCcc-ccCCCCcCeeccccCCceeecc-cccccCCCCCCCeEECCCcccceeccccc--
Q 041782          245 QIGSLTQLTALDLSCNQFQGPVPSS-ISELKRLEYLDLHSNNLSGNVY-IEELLPKLKSLIVLFLSANNLSLITRNTV--  320 (821)
Q Consensus       245 ~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--  320 (821)
                      .+.++++|++|++++|.+. .+|.. +..+++|++|++++|++++... .......+++|+.|++++|.+++.....+  
T Consensus       167 ~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence            9999999999999999987 44544 3579999999999999986321 11234568899999999998876543322  


Q ss_pred             hhccCCCeeEEecCCCCCchhhh-------hhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCC-
Q 041782          321 NIRLQNKFVFLGLASCNLKEFLD-------FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDR-  392 (821)
Q Consensus       321 ~~~~~~~L~~L~L~~~~l~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~-  392 (821)
                      ....+++|+.+++++|.+..+++       .+..+.+++.|++.++.+                          ..... 
T Consensus       246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i--------------------------~~~~~~  299 (549)
T 2z81_A          246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI--------------------------PQFYLF  299 (549)
T ss_dssp             GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBC--------------------------SCGGGS
T ss_pred             Hhhhhccccccccccccccccccccccchhhhhhhccccccccccccc--------------------------chhhhc
Confidence            12356789999999997644321       223344555555554443                          22110 


Q ss_pred             ---CccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh-hCCCCCcEEEcCCCcCcccCCccccCc
Q 041782          393 ---GSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL-CNLNSLRVLDLSHNFLSGVLPQCLSNS  468 (821)
Q Consensus       393 ---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~~  468 (821)
                         .......++|++|++++|.+.                      .+|..+ ..+++|++|++++|++.+.+|...   
T Consensus       300 ~~l~~~~~~~~~L~~L~l~~n~l~----------------------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---  354 (549)
T 2z81_A          300 YDLSTVYSLLEKVKRITVENSKVF----------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS---  354 (549)
T ss_dssp             CCCCHHHHHSTTCCEEEEESSCCC----------------------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH---
T ss_pred             ccchhhhhhcccceEEEeccCccc----------------------cCCHHHHhcCccccEEEccCCccccccccch---
Confidence               001123456777777777654                      455555 578999999999999988764321   


Q ss_pred             ccccCCCcccEEeccCccccccCc--hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccC
Q 041782          469 KIFKNATNLKMIDLSHNLLQGRIP--RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF  546 (821)
Q Consensus       469 ~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  546 (821)
                      ..+..+++|++|++++|.+++..+  ..+..+++|++|++++|+++. +|..+..+++|++|++++|++.+ ++...   
T Consensus       355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---  429 (549)
T 2z81_A          355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRV-VKTCI---  429 (549)
T ss_dssp             TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSC-CCTTS---
T ss_pred             hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCccc-ccchh---
Confidence            124568899999999999986532  468899999999999999985 57788899999999999999873 34322   


Q ss_pred             CCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecce
Q 041782          547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGI  626 (821)
Q Consensus       547 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (821)
                       .++|++|++++|++++.++                                                            
T Consensus       430 -~~~L~~L~Ls~N~l~~~~~------------------------------------------------------------  448 (549)
T 2z81_A          430 -PQTLEVLDVSNNNLDSFSL------------------------------------------------------------  448 (549)
T ss_dssp             -CTTCSEEECCSSCCSCCCC------------------------------------------------------------
T ss_pred             -cCCceEEECCCCChhhhcc------------------------------------------------------------
Confidence             4789999999999985321                                                            


Q ss_pred             eeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCC
Q 041782          627 EMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIP  700 (821)
Q Consensus       627 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  700 (821)
                            .++.|+.|+|++|+++ .+|. ...+++|++|+|++|++++.+|..|+.+++|++|++++|++++..|
T Consensus       449 ------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          449 ------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             ------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence                  0234899999999998 6776 5789999999999999999999999999999999999999998776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=422.48  Aligned_cols=444  Identities=21%  Similarity=0.242  Sum_probs=258.7

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI  230 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  230 (821)
                      ++|++|+|++|.+++..|   ..+.++++|++|++++|.+.+..|..|.++++|++|++++|+++ .+|..  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELWT---SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCCH---HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred             ccccEEECCCCcccccCh---hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence            566666666666665555   45555666666666666665555556666666666666666665 34443  5566666


Q ss_pred             EEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCccccCCCCc--CeeccccCCc--eeecccccccCCCC-CCCe
Q 041782          231 LSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL--EYLDLHSNNL--SGNVYIEELLPKLK-SLIV  304 (821)
Q Consensus       231 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~l~~l~-~L~~  304 (821)
                      |++++|.+++ .+|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..+  ..+..+. ....
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~--~~l~~l~~~~l~  169 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLH  169 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT--TTTTTCCEEEEE
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc--ccccccccceEE
Confidence            6666666654 345566666666666666665553   234455555  6666666655  32222  1122222 1123


Q ss_pred             EECCCcccceeccccchhccCCCeeEEecCCCC-------CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCe
Q 041782          305 LFLSANNLSLITRNTVNIRLQNKFVFLGLASCN-------LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNL  377 (821)
Q Consensus       305 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~-------l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L  377 (821)
                      +++++|.+.+..... ....+++|+.+++++|.       +......+..+++|+.|++++|.+.+..+..+..      
T Consensus       170 l~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~------  242 (520)
T 2z7x_B          170 IVFPTNKEFHFILDV-SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ------  242 (520)
T ss_dssp             EECCSSSCCCCCCCC-CCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH------
T ss_pred             EEeccCcchhhhhhh-hhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH------
Confidence            344444433221111 01123334444444433       1111124445555555555555443221111100      


Q ss_pred             eEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh-----hCCCCCcEEEc
Q 041782          378 QFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL-----CNLNSLRVLDL  452 (821)
Q Consensus       378 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l-----~~l~~L~~L~L  452 (821)
                                        ....++|++|++++|++.|.                     +|..+     .++++|+.+++
T Consensus       243 ------------------~~~~~~L~~L~l~~n~l~~~---------------------~p~~~~~~~~~~l~~L~~l~l  283 (520)
T 2z7x_B          243 ------------------LVWHTTVWYFSISNVKLQGQ---------------------LDFRDFDYSGTSLKALSIHQV  283 (520)
T ss_dssp             ------------------HHHTSSCSEEEEEEEEEESC---------------------CCCCCCCCCSCCCCEEEEEEE
T ss_pred             ------------------HhhhCcccEEEeecccccCc---------------------cccchhhcccccCceeEeccc
Confidence                              00123455555555554433                     33333     55666777777


Q ss_pred             CCCcCcccCC-ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEcc
Q 041782          453 SHNFLSGVLP-QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQ  531 (821)
Q Consensus       453 s~n~l~~~~p-~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  531 (821)
                      ++|.+  .+| ..+..   +....+|+.|++++|.+.+..  .+..+++|++|++++|++++..|..++.+++|++|+++
T Consensus       284 ~~n~~--~~p~~~~~~---~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          284 VSDVF--GFPQSYIYE---IFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             EECCC--CSCTHHHHH---HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             cccce--ecchhhhhc---ccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence            77766  344 22111   000145777777777765322  12566777777777777777777777777777777777


Q ss_pred             CCcCcc--cCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccccccc
Q 041782          532 FNRFHG--EIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDY  609 (821)
Q Consensus       532 ~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  609 (821)
                      +|++.+  .+|..+  ..+++|++|++++|++++.+|...+..                                     
T Consensus       357 ~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------------------------------  397 (520)
T 2z7x_B          357 MNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCSW-------------------------------------  397 (520)
T ss_dssp             SSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCCC-------------------------------------
T ss_pred             CCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhcc-------------------------------------
Confidence            777764  333323  457778888888888776566432111                                     


Q ss_pred             ccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEe
Q 041782          610 SLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLD  689 (821)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  689 (821)
                                              ++.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+
T Consensus       398 ------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~  450 (520)
T 2z7x_B          398 ------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELN  450 (520)
T ss_dssp             ------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred             ------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence                                    23477888888888877777665  78999999999998 7888778999999999


Q ss_pred             CCCCcccccCCCC-ccccCCccEEEcccCcccccCCC
Q 041782          690 LSNNNLSGEIPRQ-LAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       690 Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      |++|++++ +|.. +..+++|++|++++|+++|.++.
T Consensus       451 L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          451 VASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            99999985 5554 88899999999999999987763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.1e-43  Score=411.20  Aligned_cols=516  Identities=21%  Similarity=0.145  Sum_probs=297.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      +++++|||++|.++.  +|+.-            |.++++|++|||++|+|++..+   ..|.++++|++|+|++|++.+
T Consensus        52 ~~~~~LdLs~N~i~~--l~~~~------------f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH--LGSYS------------FFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             TTCCEEECTTSCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCE
T ss_pred             cCCCEEEeeCCCCCC--CCHHH------------HhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCC
Confidence            367777777777742  43221            6677777777777777776666   455666777777777777665


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCccCCCCCCcccc
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRG-YLPSQIGSLTQLTALDLSCNQFQGPVPSSIS  271 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  271 (821)
                      ..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+.
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            555566777777777777777765555566777777777777777654 3456666677777777777777666666665


Q ss_pred             CCCCcC----eeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC-------ch
Q 041782          272 ELKRLE----YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL-------KE  340 (821)
Q Consensus       272 ~l~~L~----~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l-------~~  340 (821)
                      .+.+++    .++++.|.+....+  . ......++.+++.+|........ .....+..++...+..+..       ..
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~--~-~~~~~~~~~l~l~~n~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQP--G-AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECT--T-TTTTCEEEEEEEESCCSSHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             chhhhhhhhhhhhcccCcccccCc--c-cccchhhhhhhhhcccccccccc-hhhcCCcccccccccccccccccccccc
Confidence            544433    45556665553221  1 22233344555555433211100 0011223333322211111       01


Q ss_pred             hhhhhcCCCccceEecccCCCCCC---CCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782          341 FLDFLNDQDQLELLDLSANKIPGK---IPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP  417 (821)
Q Consensus       341 ~~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  417 (821)
                      ....+.....+...++..+.....   .+..+...  .+++.+++.++.+.....   .....+++.|++.+|.+.+..+
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL--TNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG--TTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCC
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhh--cccccccccccccccccc---cccchhhhhhhcccccccCcCc
Confidence            111222233334444333322211   11222233  456666666666554432   2334566777777776665555


Q ss_pred             CCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcC
Q 041782          418 IPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLAN  497 (821)
Q Consensus       418 ~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  497 (821)
                      .....++.+.+..|......  ....+++|+.|++++|.+....+..    ..+..+.+|++|++..|.+.. .+..+..
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~----~~~~~~~~L~~L~~~~~~~~~-~~~~~~~  418 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS----QSDFGTISLKYLDLSFNGVIT-MSSNFLG  418 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC----HHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred             ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccc----cchhhhhhhhhhhcccccccc-ccccccc
Confidence            44555666666666554322  2335666666666666654321110    112235566666666666552 3445566


Q ss_pred             CCCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782          498 CTMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI  576 (821)
Q Consensus       498 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l  576 (821)
                      +++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+  ..+++|+.|++++|.+.+.+++..|.     
T Consensus       419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~-----  491 (635)
T 4g8a_A          419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFT-----  491 (635)
T ss_dssp             CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCT-----
T ss_pred             cccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhh-----
Confidence            6666666666665544432 345566666666666666665555444  44666666666666543322211111     


Q ss_pred             hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782          577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS  656 (821)
Q Consensus       577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  656 (821)
                                                                              .++.|+.|||++|++++..|..|+
T Consensus       492 --------------------------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~  515 (635)
T 4g8a_A          492 --------------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFN  515 (635)
T ss_dssp             --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             --------------------------------------------------------hccccCEEECCCCccCCcChHHHc
Confidence                                                                    133477788888888877777888


Q ss_pred             cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCcccc-CCccEEEcccCcccccCC
Q 041782          657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAEL-TSLAVFDVSDNNLTGQIP  724 (821)
Q Consensus       657 ~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP  724 (821)
                      ++++|++|+|++|++++..|..|+++++|++|||++|+|++..|..|..+ ++|++|++++|++++.+.
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            88888888888888887777778888888888888888888888877777 578888888888877664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-44  Score=409.66  Aligned_cols=453  Identities=18%  Similarity=0.234  Sum_probs=344.7

Q ss_pred             EEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCC-ccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782           90 IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIP-SEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS  168 (821)
Q Consensus        90 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp-~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~  168 (821)
                      +.||+++++++ .+|.  .+.  ++|++|+|++|.+.+  ++ ..             +.++++|++|+|++|++++..|
T Consensus         3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~--~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~   62 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISE--LWTSD-------------ILSLSKLRILIISHNRIQYLDI   62 (520)
T ss_dssp             CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCC--CCHHH-------------HTTCTTCCEEECCSSCCCEEEG
T ss_pred             ceEecCCCCcc-cccc--ccc--ccccEEECCCCcccc--cChhh-------------ccccccccEEecCCCccCCcCh
Confidence            36899999988 4654  454  899999999999864  44 34             7889999999999999999888


Q ss_pred             CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782          169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIG  247 (821)
Q Consensus       169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  247 (821)
                         ..++++++|++|++++|.+. .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++   ..+.
T Consensus        63 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~  133 (520)
T 2z7x_B           63 ---SVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL  133 (520)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG
T ss_pred             ---HHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc
Confidence               77889999999999999997 57766  89999999999999987 578999999999999999999986   4577


Q ss_pred             CCCCC--CEEEccCccC--CCCCCccccCCC-CcCeeccccCCceeecccccccCCCCCCCeEECCCcc-------ccee
Q 041782          248 SLTQL--TALDLSCNQF--QGPVPSSISELK-RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-------LSLI  315 (821)
Q Consensus       248 ~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~  315 (821)
                      .+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++. ..+..+++|+.|++++|.       +.+.
T Consensus       134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  212 (520)
T 2z7x_B          134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-VSVKTVANLELSNIKCVLEDNKCSYFLSI  212 (520)
T ss_dssp             GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC-CCCTTCSEEEECCEEECCSTTTTHHHHHH
T ss_pred             ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh-hhhhcccceeeccccccccccccceeecc
Confidence            78888  9999999999  778888887766 344678888888876665 557889999999999986       4433


Q ss_pred             ccccchhccCCCeeEEecCCCCCch-----hhhhhcCCCccceEecccCCCCCCCCcch-----hccCCCCeeEEEcCCC
Q 041782          316 TRNTVNIRLQNKFVFLGLASCNLKE-----FLDFLNDQDQLELLDLSANKIPGKIPGWL-----LNVTTGNLQFVNLSYN  385 (821)
Q Consensus       316 ~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~~~~~~L~~L~Ls~n  385 (821)
                      .+   ....+++|+.|++++|.+..     ++..+ ..++|++|++++|++.+.+|..+     ..+  ++|+.+++++|
T Consensus       213 ~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l--~~L~~l~l~~n  286 (520)
T 2z7x_B          213 LA---KLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL--KALSIHQVVSD  286 (520)
T ss_dssp             HH---GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCC--CEEEEEEEEEC
T ss_pred             hh---hhccccchhhccccccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccC--ceeEecccccc
Confidence            32   23467899999999887732     22222 24689999999999988888876     344  44444444444


Q ss_pred             CCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCC---CCCcEEEcCCCcCcccCC
Q 041782          386 LITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNL---NSLRVLDLSHNFLSGVLP  462 (821)
Q Consensus       386 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~p  462 (821)
                      .+ ..+.                                              ..+..+   .+|+.|++++|.+.... 
T Consensus       287 ~~-~~p~----------------------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~-  318 (520)
T 2z7x_B          287 VF-GFPQ----------------------------------------------SYIYEIFSNMNIKNFTVSGTRMVHML-  318 (520)
T ss_dssp             CC-CSCT----------------------------------------------HHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             ce-ecch----------------------------------------------hhhhcccccCceeEEEcCCCcccccc-
Confidence            44 1110                                              122222   45677777776665331 


Q ss_pred             ccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCc--CCchhhCCCCCCCEEEccCCcCcccCC
Q 041782          463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD--IFPSWLGTLPELKVLMLQFNRFHGEIG  540 (821)
Q Consensus       463 ~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~  540 (821)
                             .+..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..++.+++|++|++++|++.+.+|
T Consensus       319 -------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~  391 (520)
T 2z7x_B          319 -------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK  391 (520)
T ss_dssp             -------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred             -------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence                   01346777788888888777777777788888888888888876  345677888888888888888876555


Q ss_pred             CCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEE
Q 041782          541 EPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSIT  620 (821)
Q Consensus       541 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  620 (821)
                      ... ...+++|++|++++|++++.+|...                                                   
T Consensus       392 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l---------------------------------------------------  419 (520)
T 2z7x_B          392 KGD-CSWTKSLLSLNMSSNILTDTIFRCL---------------------------------------------------  419 (520)
T ss_dssp             GCS-CCCCTTCCEEECCSSCCCGGGGGSC---------------------------------------------------
T ss_pred             cch-hccCccCCEEECcCCCCCcchhhhh---------------------------------------------------
Confidence            432 1457888899999988876555321                                                   


Q ss_pred             EEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhh-hhcCccCCCeEeCCCCcccccC
Q 041782          621 MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNLSGEI  699 (821)
Q Consensus       621 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~  699 (821)
                                   .+.|+.|++++|+++ .+|..+.++++|++|+|++|++++ +|. .|..+++|++|++++|++++..
T Consensus       420 -------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          420 -------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             -------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             -------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence                         123888999999998 788888899999999999999994 555 4889999999999999998754


Q ss_pred             C
Q 041782          700 P  700 (821)
Q Consensus       700 p  700 (821)
                      +
T Consensus       485 ~  485 (520)
T 2z7x_B          485 P  485 (520)
T ss_dssp             H
T ss_pred             C
Confidence            4

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-45  Score=425.05  Aligned_cols=461  Identities=18%  Similarity=0.215  Sum_probs=338.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCC------C------CCCCCchhccCCCCC
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFS------S------PHSASFSWIAKQTEL  180 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~------~------~~~~~~~~l~~l~~L  180 (821)
                      .+++.|+|+++.+.+ .+|+.             ++++++|++|+|++|.+.      +      .+|   ...  +..|
T Consensus        81 ~~V~~L~L~~~~l~g-~lp~~-------------l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~---~~~--~~~l  141 (636)
T 4eco_A           81 GRVTGLSLEGFGASG-RVPDA-------------IGQLTELEVLALGSHGEKVNERLFGPKGISANMS---DEQ--KQKM  141 (636)
T ss_dssp             CCEEEEECTTSCCEE-EECGG-------------GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC---HHH--HHHH
T ss_pred             CCEEEEEecCcccCC-cCChH-------------HhcCccceEEECcCCccccCCccccccccccCch---HHH--HHHH
Confidence            589999999998864 46666             788999999999999762      2      122   111  3455


Q ss_pred             CEEecCCccccccCCccccC-CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEcc--CCcCCCCCccccCCCCCCCEEEc
Q 041782          181 SWLALANINLIGEFPSWLMN-LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLK--SNQLRGYLPSQIGSLTQLTALDL  257 (821)
Q Consensus       181 ~~L~L~~n~~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L  257 (821)
                      + ++++++.+.+.+|..+.. +..+..+++....+..      .....++.+.+.  .|++++ +|..++++++|++|++
T Consensus       142 ~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~L  213 (636)
T 4eco_A          142 R-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM  213 (636)
T ss_dssp             H-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEE
T ss_pred             H-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEEC
Confidence            5 666666666665555442 1222222222222211      111233333333  578888 8999999999999999


Q ss_pred             cCccCCCC-----------------CCcccc--CCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc-cceecc
Q 041782          258 SCNQFQGP-----------------VPSSIS--ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN-LSLITR  317 (821)
Q Consensus       258 s~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~  317 (821)
                      ++|.+++.                 +|..++  ++++|++|++++|.+.+.+|.  .+.++++|++|++++|. +++   
T Consensus       214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~---  288 (636)
T 4eco_A          214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISG---  288 (636)
T ss_dssp             ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCH---
T ss_pred             cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCcc---
Confidence            99999975                 888888  899999999999988877663  47778888888777776 553   


Q ss_pred             ccchhccCCCeeEEecCCCCCchhhhhhcCC------CccceEecccCCCCCCCCc--chhccCCCCeeEEEcCCCCCCC
Q 041782          318 NTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ------DQLELLDLSANKIPGKIPG--WLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       318 ~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l------~~L~~L~Ls~n~l~~~~p~--~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                                           ..+|..++.+      ++|++|++++|+++ .+|.  .+..+                 
T Consensus       289 ---------------------~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-----------------  329 (636)
T 4eco_A          289 ---------------------EQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-----------------  329 (636)
T ss_dssp             ---------------------HHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-----------------
T ss_pred             ---------------------ccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-----------------
Confidence                                 0244444443      67777777777776 5665  55544                 


Q ss_pred             CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782          390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK  469 (821)
Q Consensus       390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~  469 (821)
                                ++|++|++++|.+.|                     .+| .+..+++|++|++++|+++ .+|..+.   
T Consensus       330 ----------~~L~~L~L~~N~l~g---------------------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~---  373 (636)
T 4eco_A          330 ----------KKLGMLECLYNQLEG---------------------KLP-AFGSEIKLASLNLAYNQIT-EIPANFC---  373 (636)
T ss_dssp             ----------TTCCEEECCSCCCEE---------------------ECC-CCEEEEEESEEECCSSEEE-ECCTTSE---
T ss_pred             ----------CCCCEEeCcCCcCcc---------------------chh-hhCCCCCCCEEECCCCccc-cccHhhh---
Confidence                      444555554444433                     333 4666788999999999998 6776543   


Q ss_pred             cccCCCc-ccEEeccCccccccCchhhcCCC--CCCEEeCCCCcCCcCCchhhC-------CCCCCCEEEccCCcCcccC
Q 041782          470 IFKNATN-LKMIDLSHNLLQGRIPRSLANCT--MLEFLDLGNNQIADIFPSWLG-------TLPELKVLMLQFNRFHGEI  539 (821)
Q Consensus       470 ~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~N~l~~~~  539 (821)
                         .+++ |++|++++|.++ .+|..+..++  +|++|++++|++++..|..+.       .+++|++|++++|++. .+
T Consensus       374 ---~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l  448 (636)
T 4eco_A          374 ---GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF  448 (636)
T ss_dssp             ---EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred             ---hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cC
Confidence               4678 999999999998 7888877655  899999999999999888888       7889999999999998 45


Q ss_pred             CCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeE
Q 041782          540 GEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI  619 (821)
Q Consensus       540 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  619 (821)
                      |... ...+++|++|+|++|+++ .+|...+.....                                            
T Consensus       449 p~~~-~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~--------------------------------------------  482 (636)
T 4eco_A          449 PKEL-FSTGSPLSSINLMGNMLT-EIPKNSLKDENE--------------------------------------------  482 (636)
T ss_dssp             CTHH-HHTTCCCSEEECCSSCCS-BCCSSSSEETTE--------------------------------------------
T ss_pred             CHHH-HccCCCCCEEECCCCCCC-CcCHHHhccccc--------------------------------------------
Confidence            5432 134789999999999998 777653321100                                            


Q ss_pred             EEEecceeeecccccccccEEEcccccccCccccccc--cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeC------C
Q 041782          620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS--ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDL------S  691 (821)
Q Consensus       620 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~--~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s  691 (821)
                                ....++.|+.|+|++|+++ .+|..+.  .+++|++|+|++|++++ +|..+.++++|++|+|      +
T Consensus       483 ----------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          483 ----------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             ----------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             ----------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence                      0001235999999999999 7888887  99999999999999997 8999999999999999      5


Q ss_pred             CCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCC
Q 041782          692 NNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCG  745 (821)
Q Consensus       692 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~  745 (821)
                      +|++.+.+|..+..+++|++|++++|++ +.+|... +.++....+.+|+..|-
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence            6889999999999999999999999999 7889763 36777788889987763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.1e-43  Score=413.09  Aligned_cols=367  Identities=21%  Similarity=0.291  Sum_probs=210.9

Q ss_pred             CcCCCCcchhhhcCCCCCEEEccCCcCCC-----------------CCccccC--CCCCCCEEEccCccCCCCCCccccC
Q 041782          212 NQLTGPIPNWLANLNRLTILSLKSNQLRG-----------------YLPSQIG--SLTQLTALDLSCNQFQGPVPSSISE  272 (821)
Q Consensus       212 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~  272 (821)
                      |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++|+|++|.+.+.+|..|++
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            66665 67777777777777777777776                 2566655  6666666666666666666666666


Q ss_pred             CCCcCeeccccCC-cee-ecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhh--hhcCC
Q 041782          273 LKRLEYLDLHSNN-LSG-NVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD--FLNDQ  348 (821)
Q Consensus       273 l~~L~~L~L~~n~-l~~-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--~l~~l  348 (821)
                      +++|++|++++|+ +++ .+|. . +..++                   .....+++|+.|++++|.+..+|.  .+..+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~-~-i~~L~-------------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L  572 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKA-D-WTRLA-------------------DDEDTGPKIQIFYMGYNNLEEFPASASLQKM  572 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHH-H-HHHHH-------------------HCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred             CCCCCEEECcCCCCcccccchH-H-HHhhh-------------------hcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence            6666666666665 554 3332 1 11111                   000012233333333333333444  45555


Q ss_pred             CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782          349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV  428 (821)
Q Consensus       349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l  428 (821)
                      ++|+.|++++|++. .+| .+..+  ++|+.|++++|.++.                                       
T Consensus       573 ~~L~~L~Ls~N~l~-~lp-~~~~L--~~L~~L~Ls~N~l~~---------------------------------------  609 (876)
T 4ecn_A          573 VKLGLLDCVHNKVR-HLE-AFGTN--VKLTDLKLDYNQIEE---------------------------------------  609 (876)
T ss_dssp             TTCCEEECTTSCCC-BCC-CCCTT--SEESEEECCSSCCSC---------------------------------------
T ss_pred             CCCCEEECCCCCcc-cch-hhcCC--CcceEEECcCCcccc---------------------------------------
Confidence            55666666665555 444 44444  444555554444442                                       


Q ss_pred             cCCccCCCCchhhhCCCC-CcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchh---hc--CCCCCC
Q 041782          429 SNNLLTGKLAPWLCNLNS-LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS---LA--NCTMLE  502 (821)
Q Consensus       429 ~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~--~l~~L~  502 (821)
                              +|..+.++++ |++|++++|+++ .+|..+..    ...++|+.|++++|.+.+.+|..   +.  .+++|+
T Consensus       610 --------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~----~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          610 --------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             --------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCT----TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             --------chHHHhhccccCCEEECcCCCCC-cCchhhhc----cccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence                    2333444454 555555555555 44433221    01223555555555555443321   11  223566


Q ss_pred             EEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCcc------CCCCCCcEEEccCCcCccCCChhhhhccchh
Q 041782          503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG------FVFPKLRIIDLSHNRFSGKLPSKYFQCWNAI  576 (821)
Q Consensus       503 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l  576 (821)
                      .|++++|+++.+.+..+..+++|+.|+|++|++. .+|.....      ..+++|+.|+|++|+++ .+|..++.     
T Consensus       677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-----  749 (876)
T 4ecn_A          677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-----  749 (876)
T ss_dssp             EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-----
T ss_pred             EEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-----
Confidence            6666666666443333345666666666666665 44433211      12337777888887776 56643210     


Q ss_pred             hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782          577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS  656 (821)
Q Consensus       577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  656 (821)
                                                                             ..++.|+.|+|++|++++ +|..+.
T Consensus       750 -------------------------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~  773 (876)
T 4ecn_A          750 -------------------------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPL  773 (876)
T ss_dssp             -------------------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             -------------------------------------------------------ccCCCcCEEEeCCCCCCc-cchhhh
Confidence                                                                   002347778888888876 677777


Q ss_pred             cCCCCCEEeCCC------cccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccccc
Q 041782          657 ELKGLNCLNLSG------NNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ  722 (821)
Q Consensus       657 ~L~~L~~L~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  722 (821)
                      ++++|+.|+|++      |++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...
T Consensus       774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            888888888865      778888888888888888888888888 67887765  5888888888887643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2e-41  Score=397.66  Aligned_cols=510  Identities=21%  Similarity=0.197  Sum_probs=396.7

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP  166 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~  166 (821)
                      ..++.|||+++.+++..+.  +|.++++|++|||++|.++.  +|+..            |.++++|++|+|++|++++.
T Consensus        52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~--i~~~~------------f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQT--IEDGA------------YQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCE--ECTTT------------TTTCTTCCEEECTTCCCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCC--cChhH------------hcCCCCCCEEEccCCcCCCC
Confidence            3689999999999876544  89999999999999999863  54432            88999999999999999998


Q ss_pred             CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccc
Q 041782          167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQ  245 (821)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  245 (821)
                      .+   ..|.++++|++|++++|++.+..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..|..
T Consensus       116 ~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          116 AL---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CG---GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CH---HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            87   678899999999999999988777789999999999999999976 46889999999999999999999888888


Q ss_pred             cCCCCCC----CEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccce------e
Q 041782          246 IGSLTQL----TALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSL------I  315 (821)
Q Consensus       246 l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~------~  315 (821)
                      +..+.++    ..++++.|.+....+. ......++.+++.+|.....+.. ..+..+..++...+..+....      .
T Consensus       193 l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          193 LRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHH-HHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccc-hhhcCCcccccccccccccccccccccc
Confidence            8765544    4789999999855444 44455678889988876543333 446677777766654432221      1


Q ss_pred             ccccchhccCCCeeEEecCCCCC----chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782          316 TRNTVNIRLQNKFVFLGLASCNL----KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD  391 (821)
Q Consensus       316 ~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~  391 (821)
                      ....+  .....+....+..+..    ...+..+....+++.+++.++.+....+  +...  ..++.|++.+|.+....
T Consensus       271 ~~~~~--~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          271 DKSAL--EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN--FGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CTTTT--GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSC--CCCSEEEEESCEESSCC
T ss_pred             ccccc--ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccc--hhhhhhhcccccccCcC
Confidence            11111  1233344443333222    3334455666778888888877654322  3333  67888888888887765


Q ss_pred             CCccccccCCccEEEeccCcccCcCCCC-CcccceeeccCCccC--CCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782          392 RGSVVLLWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLLT--GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS  468 (821)
Q Consensus       392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~  468 (821)
                      ..    .+..|+.+++..|......... .++++.++++.|.+.  +..+..+..+.+|+.+++..|.+....+      
T Consensus       345 ~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~------  414 (635)
T 4g8a_A          345 TL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS------  414 (635)
T ss_dssp             CC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS------
T ss_pred             cc----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc------
Confidence            43    4577888888888776654433 567888888888775  3456777889999999999998775433      


Q ss_pred             ccccCCCcccEEeccCccccccCc-hhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcc-cCCCCCccC
Q 041782          469 KIFKNATNLKMIDLSHNLLQGRIP-RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHG-EIGEPDTGF  546 (821)
Q Consensus       469 ~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~  546 (821)
                       .+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+..+++|++|++++|.+.. ..|..+  .
T Consensus       415 -~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~--~  491 (635)
T 4g8a_A          415 -NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--T  491 (635)
T ss_dssp             -CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--T
T ss_pred             -cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--h
Confidence             24558999999999888765544 568899999999999999999999999999999999999998654 455555  6


Q ss_pred             CCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecce
Q 041782          547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGI  626 (821)
Q Consensus       547 ~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (821)
                      .+++|++|+|++|++++..|.. |..                                                      
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~-f~~------------------------------------------------------  516 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTA-FNS------------------------------------------------------  516 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTT-TTT------------------------------------------------------
T ss_pred             hccccCEEECCCCccCCcChHH-HcC------------------------------------------------------
Confidence            7899999999999998655532 322                                                      


Q ss_pred             eeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc-cCCCeEeCCCCccccc
Q 041782          627 EMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL-TVLESLDLSNNNLSGE  698 (821)
Q Consensus       627 ~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~  698 (821)
                             ++.|+.|+|++|++++..|..|.++++|++|+|++|++++.+|+.|..+ ++|++|+|++|+++..
T Consensus       517 -------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          517 -------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             -------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             -------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence                   3348999999999999999999999999999999999999999999998 6899999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.4e-42  Score=398.12  Aligned_cols=471  Identities=20%  Similarity=0.243  Sum_probs=277.1

Q ss_pred             EEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCC-ccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCC
Q 041782           90 IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIP-SEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHS  168 (821)
Q Consensus        90 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp-~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~  168 (821)
                      +.++++++++++ +|.  .+.  ++|++|+|++|.+.+  +| ..             +.++++|++|+|++|.+++..|
T Consensus        34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~--~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~~   93 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISE--LRMPD-------------ISFLSELRVLRLSHNRIRSLDF   93 (562)
T ss_dssp             CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCC--CCGGG-------------TTTCTTCCEEECCSCCCCEECT
T ss_pred             cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCccc--cChhh-------------hccCCCccEEECCCCCCCcCCH
Confidence            678888888775 554  443  788888888888753  44 23             7788888888888888888777


Q ss_pred             CCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC-CcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782          169 ASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQLRGYLPSQIG  247 (821)
Q Consensus       169 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  247 (821)
                         ..+.++++|++|++++|.+. .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++.   .+.
T Consensus        94 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~  164 (562)
T 3a79_B           94 ---HVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL  164 (562)
T ss_dssp             ---TTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG
T ss_pred             ---HHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh
Confidence               66677888888888888876 56665  78888888888888876 3457788888888888888887753   344


Q ss_pred             CCCCC--CEEEccCccC--CCCCCccccCCC--CcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccch
Q 041782          248 SLTQL--TALDLSCNQF--QGPVPSSISELK--RLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN  321 (821)
Q Consensus       248 ~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  321 (821)
                      .+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++. ..+..+++|+.+++++|.....      
T Consensus       165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~------  236 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN-MSVNALGHLQLSNIKLNDENCQ------  236 (562)
T ss_dssp             GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCE-EEESSEEEEEEEEEECCSTTHH------
T ss_pred             hhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhh-hcccccceEEEecccccccccc------
Confidence            44455  8888888887  777777776554  23 456677766654443 3355556666666655531100      


Q ss_pred             hccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCC
Q 041782          322 IRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD  401 (821)
Q Consensus       322 ~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~  401 (821)
                                     .+......+..+++|+.++++++.+.+.....+..                        ....++
T Consensus       237 ---------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~------------------------~~~~~~  277 (562)
T 3a79_B          237 ---------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ------------------------FFWPRP  277 (562)
T ss_dssp             ---------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH------------------------HHTTSS
T ss_pred             ---------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH------------------------hhhccc
Confidence                           01122334556666666666665544211111000                        001123


Q ss_pred             ccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcc-ccCcccccCCCcccEE
Q 041782          402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC-LSNSKIFKNATNLKMI  480 (821)
Q Consensus       402 L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~~l~~L~~L  480 (821)
                      |++|++++|.+.|.+|....                .....+++.|+.+++..+.+  .+|.. +..   +....+|++|
T Consensus       278 L~~L~l~~n~l~~~ip~~~~----------------~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~---~~~~~~L~~L  336 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEF----------------TYSETALKSLMIEHVKNQVF--LFSKEALYS---VFAEMNIKML  336 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCC----------------CCCSCSCCEEEEEEEEECCC--SSCHHHHHH---HHHTCCCSEE
T ss_pred             ccEEEEeccEeeccccchhh----------------hcccccchheehhhccccee--ecChhhhhh---hhccCcceEE
Confidence            44444444443332222100                00002223333333333333  12210 000   0001235555


Q ss_pred             eccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCccc--CCCCCccCCCCCCcEEEccC
Q 041782          481 DLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGE--IGEPDTGFVFPKLRIIDLSH  558 (821)
Q Consensus       481 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~  558 (821)
                      ++++|.+....  ....+++|++|++++|++++..|..++.+++|++|++++|++.+.  +|..+  ..+++|++|++++
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~  412 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSL  412 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTT
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCC
Confidence            55555543211  113455555555555555555555555555566666655555531  11222  4456666666666


Q ss_pred             CcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccccccc
Q 041782          559 NRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLT  638 (821)
Q Consensus       559 N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  638 (821)
                      |++++.+|...+..                                                             ++.|+
T Consensus       413 N~l~~~~~~~~~~~-------------------------------------------------------------l~~L~  431 (562)
T 3a79_B          413 NSLNSHAYDRTCAW-------------------------------------------------------------AESIL  431 (562)
T ss_dssp             SCCBSCCSSCCCCC-------------------------------------------------------------CTTCC
T ss_pred             CcCCCccChhhhcC-------------------------------------------------------------cccCC
Confidence            66665455332111                                                             22366


Q ss_pred             EEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCC-ccccCCccEEEcccC
Q 041782          639 GIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQ-LAELTSLAVFDVSDN  717 (821)
Q Consensus       639 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N  717 (821)
                      .|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N  507 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN  507 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence            677777777766666554  67888888888888 677766788888888888888884 5554 888888999999999


Q ss_pred             cccccCCCC
Q 041782          718 NLTGQIPQG  726 (821)
Q Consensus       718 ~l~g~iP~~  726 (821)
                      +++|.+|..
T Consensus       508 ~~~c~c~~~  516 (562)
T 3a79_B          508 PWDCTCPGI  516 (562)
T ss_dssp             CBCCCHHHH
T ss_pred             CcCCCcchH
Confidence            988877643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.9e-41  Score=387.99  Aligned_cols=443  Identities=17%  Similarity=0.204  Sum_probs=330.7

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSP  166 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~  166 (821)
                      .+++.|+|+++.+.+..+.  ++.++++|++|+|++|.+++. .|..             ++++++|++|+|++|.++..
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~-------------~~~l~~L~~L~Ls~N~l~~l  115 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHV-------------FLFNQDLEYLDVSHNRLQNI  115 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTT-------------TTTCTTCCEEECTTSCCCEE
T ss_pred             CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHH-------------hCCCCCCCEEECCCCcCCcc
Confidence            5799999999999877655  899999999999999998631 2333             88999999999999999954


Q ss_pred             CCCCchhccCCCCCCEEecCCccccc-cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC--CEEEccCCcC--CCC
Q 041782          167 HSASFSWIAKQTELSWLALANINLIG-EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL--TILSLKSNQL--RGY  241 (821)
Q Consensus       167 ~~~~~~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L--~~L~Ls~n~l--~~~  241 (821)
                      .+    .  .+++|++|++++|.+.+ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++.
T Consensus       116 p~----~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~  186 (562)
T 3a79_B          116 SC----C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG  186 (562)
T ss_dssp             CS----C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred             Cc----c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence            43    2  79999999999999987 5678999999999999999999864   45555666  9999999999  888


Q ss_pred             CccccCCCC--CCCEEEccCccCCCCCCc-cccCCCCcCeeccccCC-----ceeecccccccCCCCCCCeEECCCcccc
Q 041782          242 LPSQIGSLT--QLTALDLSCNQFQGPVPS-SISELKRLEYLDLHSNN-----LSGNVYIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       242 ~p~~l~~l~--~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                      .|..+..+.  .+ .+++++|.+.+.++. .+.++++|+.|++++|+     +.+.+   ..+..+++|+.++++++.+.
T Consensus       187 ~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~---~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          187 ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL---SELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             SCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH---HHHHSCSSCEEEEEEEEEEC
T ss_pred             CcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH---HHHhccCcceEEEecCCcCc
Confidence            888887765  33 568889988876654 45689999999999985     22222   23677888888887776554


Q ss_pred             eeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCC
Q 041782          314 LITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRG  393 (821)
Q Consensus       314 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~  393 (821)
                      +.                     .+..++..+. .++|++|++++|.+.+.+|..+.....                   
T Consensus       263 ~~---------------------~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~-------------------  301 (562)
T 3a79_B          263 WK---------------------CSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSE-------------------  301 (562)
T ss_dssp             HH---------------------HHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCS-------------------
T ss_pred             HH---------------------HHHHHHHhhh-cccccEEEEeccEeeccccchhhhccc-------------------
Confidence            32                     1123333332 358899999999988888876522110                   


Q ss_pred             ccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCc-hhhh---CCCCCcEEEcCCCcCcccCCccccCcc
Q 041782          394 SVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLA-PWLC---NLNSLRVLDLSHNFLSGVLPQCLSNSK  469 (821)
Q Consensus       394 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~p~~l~~~~  469 (821)
                         ..++.|+.+++..+.+                       .+| ..+.   ...+|++|++++|.+....        
T Consensus       302 ---~~L~~L~~~~~~~~~~-----------------------~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--------  347 (562)
T 3a79_B          302 ---TALKSLMIEHVKNQVF-----------------------LFSKEALYSVFAEMNIKMLSISDTPFIHMV--------  347 (562)
T ss_dssp             ---CSCCEEEEEEEEECCC-----------------------SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--------
T ss_pred             ---ccchheehhhccccee-----------------------ecChhhhhhhhccCcceEEEccCCCccccc--------
Confidence               1112223333333322                       111 1111   1256777888777765331        


Q ss_pred             cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC--chhhCCCCCCCEEEccCCcCcccCCCCCccCC
Q 041782          470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF--PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFV  547 (821)
Q Consensus       470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  547 (821)
                      ....+++|++|++++|.+++..|..+..+++|++|++++|++++..  |..++.+++|++|++++|++.+.+|... ...
T Consensus       348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~  426 (562)
T 3a79_B          348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAW  426 (562)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCC
T ss_pred             CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcC
Confidence            1134678888888888888878888888888999999999888753  4668888999999999999887566542 256


Q ss_pred             CCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEeccee
Q 041782          548 FPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIE  627 (821)
Q Consensus       548 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  627 (821)
                      +++|++|++++|++++.+|..+                                                          
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l----------------------------------------------------------  448 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCL----------------------------------------------------------  448 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSC----------------------------------------------------------
T ss_pred             cccCCEEECCCCCCCcchhhhh----------------------------------------------------------
Confidence            7899999999999886554320                                                          


Q ss_pred             eecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhh-hcCccCCCeEeCCCCcccccCC
Q 041782          628 MNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSS-LGNLTVLESLDLSNNNLSGEIP  700 (821)
Q Consensus       628 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~~p  700 (821)
                            .+.|+.|+|++|+++ .+|..+.++++|++|+|++|+++ .+|.. |+.+++|++|++++|++.+..|
T Consensus       449 ------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          449 ------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                  124889999999998 78888889999999999999999 45555 9999999999999999987654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.2e-41  Score=355.43  Aligned_cols=248  Identities=30%  Similarity=0.466  Sum_probs=194.7

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCcc--ccceeeCCCC--CCEEEEEcCCCCCcc--cc
Q 041782           30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCS--WDGVKCNEDT--GHVIKLNLTSSCIYG--SI  103 (821)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g--~~  103 (821)
                      .|.++|++||++||+++.++.          .+++|+.   +++||.  |.||+|+..+  ++|+.|+|+++.+.|  .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~----------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc----------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            599999999999999996542          5889976   678998  9999998655  899999999999998  77


Q ss_pred             cCCcccccCCCCCEEeCCC-CCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCE
Q 041782          104 NSSSSLFHLRHLEWLSLAD-NNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSW  182 (821)
Q Consensus       104 ~~~~~l~~l~~L~~L~Ls~-n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~  182 (821)
                      +.  .+.++++|++|+|++ |.+.+ .+|..             ++++++|++|+|++|.+++..|   ..+.++++|++
T Consensus        69 ~~--~l~~l~~L~~L~L~~~n~l~~-~~p~~-------------l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~  129 (313)
T 1ogq_A           69 PS--SLANLPYLNFLYIGGINNLVG-PIPPA-------------IAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVT  129 (313)
T ss_dssp             CG--GGGGCTTCSEEEEEEETTEES-CCCGG-------------GGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCE
T ss_pred             Ch--hHhCCCCCCeeeCCCCCcccc-cCChh-------------HhcCCCCCEEECcCCeeCCcCC---HHHhCCCCCCE
Confidence            66  888899999999984 77753 36665             6778888888888888887777   66777888888


Q ss_pred             EecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc
Q 041782          183 LALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN-RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ  261 (821)
Q Consensus       183 L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~  261 (821)
                      |++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            88888888777888888888888888888888777777787777 788888888888777777777776 8888888887


Q ss_pred             CCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccc
Q 041782          262 FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       262 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                      +++..|..+.++++|++|++++|.+++..+.   +..+++|++|++++|.++
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCccc
Confidence            7777777777777777777777777654332   445555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.8e-40  Score=367.85  Aligned_cols=404  Identities=24%  Similarity=0.269  Sum_probs=192.7

Q ss_pred             CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782          150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  229 (821)
                      .++|++|++++|.+ +.+|   ..++++++|++|++++|.+.+.+|.+++++++|+.+++..|..           .+++
T Consensus        10 ~~~L~~L~l~~n~l-~~iP---~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~   74 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMP---VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAH   74 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCS
T ss_pred             cccchhhhcccCch-hhCC---hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCC
Confidence            45666666666666 4555   4556666666666666666666666666666554444333321           2344


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782          230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA  309 (821)
Q Consensus       230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  309 (821)
                      +|++++|.+++ +|..   .++|++|++++|.+++ +|..   +++|++|++++|++++. +.   +  .++|++|++++
T Consensus        75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~  140 (454)
T 1jl5_A           75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSN  140 (454)
T ss_dssp             EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS---C--CTTCCEEECCS
T ss_pred             EEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC---C--CCCCCEEECcC
Confidence            45555554443 2221   2345555555555543 3322   24445555555444321 10   0  13444444444


Q ss_pred             cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782          310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                      |.++++                          | .++.+++|++|++++|++++ +|..+     .+|++|++++|.+++
T Consensus       141 n~l~~l--------------------------p-~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n~l~~  187 (454)
T 1jl5_A          141 NQLEKL--------------------------P-ELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNNQLEE  187 (454)
T ss_dssp             SCCSSC--------------------------C-CCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSSCCSS
T ss_pred             CCCCCC--------------------------c-ccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCCcCCc
Confidence            444332                          2 13333444444444444432 22211     244555555555544


Q ss_pred             CCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc
Q 041782          390 FDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK  469 (821)
Q Consensus       390 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~  469 (821)
                      .+   .+..+++|++|++++|.+++ +|..+.+++.+++++|.+. .+|. ++.+++|++|++++|++++ +|..     
T Consensus       188 l~---~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~-----  255 (454)
T 1jl5_A          188 LP---ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL-----  255 (454)
T ss_dssp             CC---CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC-----
T ss_pred             Cc---cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc-----
Confidence            32   13444555555555555544 2222334555555555554 4553 6778888888888888875 3432     


Q ss_pred             cccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCC
Q 041782          470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFP  549 (821)
Q Consensus       470 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  549 (821)
                          +++|++|++++|.+++ +|..   +++|++|++++|++++.. .   ..++|++|++++|++.+. +.     ..+
T Consensus       256 ----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~~-----~~~  317 (454)
T 1jl5_A          256 ----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-CD-----LPP  317 (454)
T ss_dssp             ----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-CC-----CCT
T ss_pred             ----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-cC-----CcC
Confidence                3678888888888875 4443   367888888888887741 1   126788888888887752 21     125


Q ss_pred             CCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeee
Q 041782          550 KLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMN  629 (821)
Q Consensus       550 ~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (821)
                      +|++|++++|++++ +|..                                                             
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~-------------------------------------------------------------  335 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL-------------------------------------------------------------  335 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC-------------------------------------------------------------
T ss_pred             cCCEEECCCCcccc-cccc-------------------------------------------------------------
Confidence            78888888888774 5421                                                             


Q ss_pred             cccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCc--chhhhhcCccCCCeEeCCCCcccccCCCCccccC
Q 041782          630 YGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG--HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT  707 (821)
Q Consensus       630 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  707 (821)
                          ++.|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++++        +.|.+.+.+|..   ++
T Consensus       336 ----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~  396 (454)
T 1jl5_A          336 ----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQ  396 (454)
T ss_dssp             ----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------
T ss_pred             ----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cC
Confidence                123777888888887 4665   46788888888888887  666655433        346666666653   46


Q ss_pred             CccEEEcccCcccc--cCCCC
Q 041782          708 SLAVFDVSDNNLTG--QIPQG  726 (821)
Q Consensus       708 ~L~~L~ls~N~l~g--~iP~~  726 (821)
                      +|++|++++|+++|  .+|..
T Consensus       397 ~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          397 NLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             ---------------------
T ss_pred             cCCEEECCCCcCCccccchhh
Confidence            78889999999887  67643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.2e-39  Score=360.81  Aligned_cols=385  Identities=22%  Similarity=0.225  Sum_probs=218.5

Q ss_pred             CCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeec
Q 041782          202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLD  280 (821)
Q Consensus       202 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  280 (821)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            34445555555554444444555555555555555444222 33445555555555555555544455555555555555


Q ss_pred             cccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCC
Q 041782          281 LHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANK  360 (821)
Q Consensus       281 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~  360 (821)
                      +++|.+++..+....+..+++|++|++++|.+++..+..                        .+..+++|++|++++|+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS------------------------FFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG------------------------GGGGCTTCCEEECTTCC
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCccc------------------------ccCCCCcccEEeCCCCc
Confidence            555555443332233455555555555555554432221                        13455666666666666


Q ss_pred             CCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782          361 IPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW  440 (821)
Q Consensus       361 l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~  440 (821)
                      +.+..|..+..+...+++.|++++|.+.+..+.....                                      .....
T Consensus       166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------~~~~~  207 (455)
T 3v47_A          166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------------------------------EKCGN  207 (455)
T ss_dssp             BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------------------------------HHHCC
T ss_pred             ccccChhhhhccccccccccccccCcccccchhhccc--------------------------------------ccccc
Confidence            6666666555554355666666666655544321000                                      00011


Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      +..+++|++|++++|++.+.+|..+...   ...++|+.|++++|.+.+..              +..+.+.+..+..+.
T Consensus       208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          208 PFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFK  270 (455)
T ss_dssp             TTTTCEEEEEECTTSCCCHHHHHHHHHH---TTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTG
T ss_pred             ccccceeeeEecCCCcccccchhhhhcc---ccccceeeEeeccccccccc--------------cchhhhccCcccccc
Confidence            2233455555555555555444333211   11245555555555443221              111111111111122


Q ss_pred             --CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccc
Q 041782          521 --TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYI  598 (821)
Q Consensus       521 --~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~  598 (821)
                        ..++|++|++++|.+.+..+..+  ..+++|++|++++|++++..|.. +..                          
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~--------------------------  321 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNA-FWG--------------------------  321 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTT-TTT--------------------------
T ss_pred             cccccCceEEEecCccccccchhhc--ccCCCCCEEECCCCcccccChhH-hcC--------------------------
Confidence              12456666666666665555544  44666666666666665433321 111                          


Q ss_pred             cCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhh
Q 041782          599 LPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSS  678 (821)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~  678 (821)
                                                         ++.|+.|+|++|++++..|..|+++++|++|+|++|++++..|..
T Consensus       322 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          322 -----------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -----------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence                                               233777888888887777888889999999999999999888999


Q ss_pred             hcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCC
Q 041782          679 LGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQF  729 (821)
Q Consensus       679 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~  729 (821)
                      |+++++|++|+|++|++++..+..|..+++|++|++++|+++|.+|....+
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            999999999999999999877778899999999999999999999865433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.2e-39  Score=360.62  Aligned_cols=425  Identities=21%  Similarity=0.269  Sum_probs=207.0

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      .-.+.++|++|++++|.+  +++|+.             ++++++|++|++++|.+.+..|   ..++++++|+++++.+
T Consensus         6 ~~~~~~~L~~L~l~~n~l--~~iP~~-------------i~~L~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~l~l~~   67 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNL--TEMPVE-------------AENVKSKTEYYNAWSEWERNAP---PGNGEQREMAVSRLRD   67 (454)
T ss_dssp             -------------------------------------------CCHHHHHHHHHHHHHTSC---TTSCCCHHHHHHHHHH
T ss_pred             cccccccchhhhcccCch--hhCChh-------------HhcccchhhhhccCCcccccCC---cccccchhcchhhhhh
Confidence            344568999999999998  457877             8899999999999999998888   6677777764444444


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |..           .++++|++++|.+++ +|.   -.++|++|++++|.+++ +|..   .++|++|++++|.+++ +|
T Consensus        68 c~~-----------~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~  127 (454)
T 1jl5_A           68 CLD-----------RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LS  127 (454)
T ss_dssp             HHH-----------HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred             hhc-----------cCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-cc
Confidence            321           234455555555442 222   12345555555555553 3322   2445555555555442 12


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND  347 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~  347 (821)
                      ..   .++|++|++++|++++ +|  + +..+++|++|++++|.+++++..      ..+|++|++++|.+..+| .++.
T Consensus       128 ~~---~~~L~~L~L~~n~l~~-lp--~-~~~l~~L~~L~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~l~-~~~~  193 (454)
T 1jl5_A          128 DL---PPLLEYLGVSNNQLEK-LP--E-LQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEELP-ELQN  193 (454)
T ss_dssp             SC---CTTCCEEECCSSCCSS-CC--C-CTTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSSCC-CCTT
T ss_pred             CC---CCCCCEEECcCCCCCC-Cc--c-cCCCCCCCEEECCCCcCcccCCC------cccccEEECcCCcCCcCc-cccC
Confidence            11   1345555555555543 22  1 45555555555555555443221      235555555555555555 3667


Q ss_pred             CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782          348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL  427 (821)
Q Consensus       348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~  427 (821)
                      +++|++|++++|++.+ +|...     ++|++|++++|.++.++ .  +..+++|++|++++|++++. |          
T Consensus       194 l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~n~l~~lp-~--~~~l~~L~~L~l~~N~l~~l-~----------  253 (454)
T 1jl5_A          194 LPFLTAIYADNNSLKK-LPDLP-----LSLESIVAGNNILEELP-E--LQNLPFLTTIYADNNLLKTL-P----------  253 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CCCCC-----TTCCEEECCSSCCSSCC-C--CTTCTTCCEEECCSSCCSSC-C----------
T ss_pred             CCCCCEEECCCCcCCc-CCCCc-----CcccEEECcCCcCCccc-c--cCCCCCCCEEECCCCcCCcc-c----------
Confidence            7778888888887765 33321     46788888888777544 2  55677788888888777641 1          


Q ss_pred             ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCC
Q 041782          428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG  507 (821)
Q Consensus       428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  507 (821)
                                 ..   .++|++|++++|++++ +|..         +++|++|++++|.+++. |.   -.++|++|+++
T Consensus       254 -----------~~---~~~L~~L~l~~N~l~~-l~~~---------~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~  305 (454)
T 1jl5_A          254 -----------DL---PPSLEALNVRDNYLTD-LPEL---------PQSLTFLDVSENIFSGL-SE---LPPNLYYLNAS  305 (454)
T ss_dssp             -----------SC---CTTCCEEECCSSCCSC-CCCC---------CTTCCEEECCSSCCSEE-SC---CCTTCCEEECC
T ss_pred             -----------cc---ccccCEEECCCCcccc-cCcc---------cCcCCEEECcCCccCcc-cC---cCCcCCEEECc
Confidence                       11   2567777777777765 3332         35677777777777652 21   12577778888


Q ss_pred             CCcCCcCCchhhCCC-CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchh
Q 041782          508 NNQIADIFPSWLGTL-PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKY  586 (821)
Q Consensus       508 ~n~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~  586 (821)
                      +|++++..     .+ ++|++|++++|++.+ +|..     +++|++|++++|+++ .+|. .                 
T Consensus       306 ~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~-----~~~L~~L~L~~N~l~-~lp~-~-----------------  355 (454)
T 1jl5_A          306 SNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL-----PPRLERLIASFNHLA-EVPE-L-----------------  355 (454)
T ss_dssp             SSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-CCCC-C-----------------
T ss_pred             CCcCCccc-----CCcCcCCEEECCCCcccc-cccc-----CCcCCEEECCCCccc-cccc-h-----------------
Confidence            77777631     22 478888888888775 4432     577888888888876 4552 0                 


Q ss_pred             cccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccC--ccccccccCCCCCEE
Q 041782          587 MQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIG--KIPTSISELKGLNCL  664 (821)
Q Consensus       587 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L  664 (821)
                                                                     ++.|+.|++++|++++  .+|..++++      
T Consensus       356 -----------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L------  382 (454)
T 1jl5_A          356 -----------------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL------  382 (454)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred             -----------------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh------
Confidence                                                           2237788888888887  677665543      


Q ss_pred             eCCCcccCcchhhhhcCccCCCeEeCCCCcccc--cCCCCccccCCccEEEcccCcccccCCCC
Q 041782          665 NLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG--EIPRQLAELTSLAVFDVSDNNLTGQIPQG  726 (821)
Q Consensus       665 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  726 (821)
                        +.|.+.+.+|..   +++|++||+++|++++  .+|.      +++.|++++|.+.+.+|..
T Consensus       383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             --ECCC----------------------------------------------------------
T ss_pred             --hhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence              346777777764   5788899999999987  5664      3566778888888877643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-37  Score=347.83  Aligned_cols=368  Identities=20%  Similarity=0.213  Sum_probs=250.6

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      ++|++|+|++|.+.+ ..|..             ++++++|++|+|++|.+.+.++.  ..+.++++|++|++++|.+.+
T Consensus        30 ~~l~~L~Ls~n~i~~-~~~~~-------------~~~l~~L~~L~L~~n~~~~~i~~--~~~~~l~~L~~L~Ls~n~l~~   93 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE-LNETS-------------FSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKLDYNQFLQ   93 (455)
T ss_dssp             TTCCEEECCSSCCCE-ECTTT-------------TSSCTTCCEEECCCCSTTCEECT--TTTTTCTTCCEEECTTCTTCE
T ss_pred             CccCEEEecCCccCc-CChhH-------------hccCccccEEECcCCcccceECc--ccccccccCCEEeCCCCccCc
Confidence            778888888887753 12333             77788888888888887654421  456677778888888777777


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcchh--hhcCCCCCEEEccCCcCCCCCccc-cCCCCCCCEEEccCccCCCCCCcc
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIPNW--LANLNRLTILSLKSNQLRGYLPSQ-IGSLTQLTALDLSCNQFQGPVPSS  269 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~  269 (821)
                      ..|..|+++++|++|++++|.+++..+..  |..+++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..
T Consensus        94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A           94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred             cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence            77777777777888888777777655444  777777777777777777666655 677777777777777777766666


Q ss_pred             ccCC--CCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccch------hccCCCeeEEecCCCCC-ch
Q 041782          270 ISEL--KRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVN------IRLQNKFVFLGLASCNL-KE  340 (821)
Q Consensus       270 l~~l--~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~~L~L~~~~l-~~  340 (821)
                      +..+  .+|+.|++++|.+.+.                          ....+.      ....++|+.|++++|.+ +.
T Consensus       174 l~~l~~~~L~~L~l~~n~l~~~--------------------------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          174 LLNFQGKHFTLLRLSSITLQDM--------------------------NEYWLGWEKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             SGGGTTCEEEEEECTTCBCTTC--------------------------STTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             hhccccccccccccccCccccc--------------------------chhhccccccccccccceeeeEecCCCccccc
Confidence            6554  5666666666665532                          111110      00122333333333333 22


Q ss_pred             hhhhhcC---CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCcc-ccccCCccEEEeccCcccCcC
Q 041782          341 FLDFLND---QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSV-VLLWTDLVTLDLRSNKLQGPL  416 (821)
Q Consensus       341 ~~~~l~~---l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~  416 (821)
                      .|..+..   .++|+.|++++|...+....                .+.+.+...... ....++|++|++++|.+    
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l----  287 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKI----  287 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCC----
T ss_pred             chhhhhccccccceeeEeeccccccccccc----------------hhhhccCcccccccccccCceEEEecCccc----
Confidence            2222221   24555555555544322110                001111111000 01123455555555544    


Q ss_pred             CCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc
Q 041782          417 PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA  496 (821)
Q Consensus       417 ~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  496 (821)
                                       .+..|..+..+++|++|++++|++.+..|..+      .++++|++|++++|.+++..|..|.
T Consensus       288 -----------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~  344 (455)
T 3v47_A          288 -----------------FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF------WGLTHLLKLNLSQNFLGSIDSRMFE  344 (455)
T ss_dssp             -----------------CEECTTTTTTCTTCCEEECTTSCCCEECTTTT------TTCTTCCEEECCSSCCCEECGGGGT
T ss_pred             -----------------cccchhhcccCCCCCEEECCCCcccccChhHh------cCcccCCEEECCCCccCCcChhHhc
Confidence                             44566778899999999999999998877654      4589999999999999988899999


Q ss_pred             CCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCCh
Q 041782          497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPS  567 (821)
Q Consensus       497 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  567 (821)
                      .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+  ..+++|++|++++|++++.+|.
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence            99999999999999999999999999999999999999996554444  5689999999999999999883

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.1e-37  Score=340.24  Aligned_cols=360  Identities=23%  Similarity=0.249  Sum_probs=261.3

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      .+.++++|++|++++|.+.+  +| .             ++.+++|++|++++|.+++. |     ++.+++|++|++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~-------------l~~l~~L~~L~Ls~n~l~~~-~-----~~~l~~L~~L~Ls~   94 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-G-------------IEKLTGLTKLICTSNNITTL-D-----LSQNTNLTYLACDS   94 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-T-------------GGGCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCS
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-h-------------hcccCCCCEEEccCCcCCeE-c-----cccCCCCCEEECcC
Confidence            67788899999999988864  44 2             67888899999999988874 2     56788888888888


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |.+.+. +  ++++++|++|++++|.+++ +|  ++.+++|++|++++|++++.   .++++++|++|++++|...+.+ 
T Consensus        95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-  164 (457)
T 3bz5_A           95 NKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-  164 (457)
T ss_dssp             SCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred             CCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence            888763 3  7888888888888888885 34  78888888888888888864   3778888888888888655454 


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND  347 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~  347 (821)
                       .+..+++|++|++++|++++ ++    +..+++|+.|++++|.++++.                            +..
T Consensus       165 -~~~~l~~L~~L~ls~n~l~~-l~----l~~l~~L~~L~l~~N~l~~~~----------------------------l~~  210 (457)
T 3bz5_A          165 -DVTPQTQLTTLDCSFNKITE-LD----VSQNKLLNRLNCDTNNITKLD----------------------------LNQ  210 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCCC-CC----CTTCTTCCEEECCSSCCSCCC----------------------------CTT
T ss_pred             -ccccCCcCCEEECCCCccce-ec----cccCCCCCEEECcCCcCCeec----------------------------ccc
Confidence             46778888888888888875 22    567778888888888776542                            334


Q ss_pred             CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782          348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL  427 (821)
Q Consensus       348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~  427 (821)
                      +++|++|++++|++++ +|  +..+  ++|++|++++|.+++.+.    ..+++|+.|++++|+           ++.++
T Consensus       211 l~~L~~L~Ls~N~l~~-ip--~~~l--~~L~~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~-----------L~~L~  270 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID--VTPL--TQLTYFDCSVNPLTELDV----STLSKLTTLHCIQTD-----------LLEID  270 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTC--TTCSEEECCSSCCSCCCC----TTCTTCCEEECTTCC-----------CSCCC
T ss_pred             CCCCCEEECcCCcccc-cC--cccc--CCCCEEEeeCCcCCCcCH----HHCCCCCEEeccCCC-----------CCEEE
Confidence            4556666666666655 33  4444  556666666666665532    245566666666653           34556


Q ss_pred             ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcc--cccCCCcccEEeccCccccccCchhhcCCCCCCEEe
Q 041782          428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK--IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD  505 (821)
Q Consensus       428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  505 (821)
                      +++|.+.+.+|  ++.+++|+.|++++|...+.+|.......  .+.++++|++|++++|++++. +  +..+++|+.|+
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~  345 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS  345 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence            66666666665  45677888888888877777664322211  245678899999999999874 3  88899999999


Q ss_pred             CCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhcc
Q 041782          506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW  573 (821)
Q Consensus       506 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l  573 (821)
                      +++|++++.        +.|..|++++|.+.|.       ..+..|+.+++++|+++|.||..++...
T Consensus       346 l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~  398 (457)
T 3bz5_A          346 CVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQF  398 (457)
T ss_dssp             CCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTT
T ss_pred             CCCCCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhccc
Confidence            999998873        5667778888988875       2356788899999999999998765443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-36  Score=338.90  Aligned_cols=358  Identities=23%  Similarity=0.211  Sum_probs=218.1

Q ss_pred             ccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCC
Q 041782          196 SWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKR  275 (821)
Q Consensus       196 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  275 (821)
                      ..++++++|++|++++|.+++. | .++.+++|++|++++|++++. |  ++.+++|++|++++|.+++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            3445555555555555555532 3 455555555555555555542 2  55555555555555555542 2  555555


Q ss_pred             cCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEe
Q 041782          276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLD  355 (821)
Q Consensus       276 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~  355 (821)
                      |++|++++|++++ ++    +..+++|++|++++|.+++++                            ++.+++|++|+
T Consensus       108 L~~L~L~~N~l~~-l~----~~~l~~L~~L~l~~N~l~~l~----------------------------l~~l~~L~~L~  154 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD----VSQNPLLTYLNCARNTLTEID----------------------------VSHNTQLTELD  154 (457)
T ss_dssp             CCEEECCSSCCSC-CC----CTTCTTCCEEECTTSCCSCCC----------------------------CTTCTTCCEEE
T ss_pred             CCEEECCCCcCCe-ec----CCCCCcCCEEECCCCccceec----------------------------cccCCcCCEEE
Confidence            5555555555553 11    445555555555555554421                            22334444444


Q ss_pred             cccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCC
Q 041782          356 LSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG  435 (821)
Q Consensus       356 Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~  435 (821)
                      +++|+..+.++  +..+  ++|++|++++|.+++.+    +..+++|++|++++|++++.                    
T Consensus       155 l~~n~~~~~~~--~~~l--~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~--------------------  206 (457)
T 3bz5_A          155 CHLNKKITKLD--VTPQ--TQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL--------------------  206 (457)
T ss_dssp             CTTCSCCCCCC--CTTC--TTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC--------------------
T ss_pred             CCCCCcccccc--cccC--CcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee--------------------
Confidence            44443333321  2333  44555555555555432    23445566666666655431                    


Q ss_pred             CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782          436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF  515 (821)
Q Consensus       436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  515 (821)
                          .+..+++|++|++++|++++ +|        +..+++|++|++++|.+++..   +..+++|+.|++++|      
T Consensus       207 ----~l~~l~~L~~L~Ls~N~l~~-ip--------~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------  264 (457)
T 3bz5_A          207 ----DLNQNIQLTFLDCSSNKLTE-ID--------VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------  264 (457)
T ss_dssp             ----CCTTCTTCSEEECCSSCCSC-CC--------CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred             ----ccccCCCCCEEECcCCcccc-cC--------ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence                14456677777777777776 33        234677777777777777543   445667777777664      


Q ss_pred             chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782          516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL  595 (821)
Q Consensus       516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l  595 (821)
                              +|+.|++++|.+.+.+|.    ..+++|+.|++++|.+.+.+|..    ...++.++++.            
T Consensus       265 --------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~----~~~L~~L~l~~------------  316 (457)
T 3bz5_A          265 --------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQ----AAGITELDLSQ------------  316 (457)
T ss_dssp             --------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECT----TCCCSCCCCTT------------
T ss_pred             --------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccC----CCcceEechhh------------
Confidence                    355666777777666653    34677888888888777766632    12222222110            


Q ss_pred             ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcch
Q 041782          596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI  675 (821)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~i  675 (821)
                                                            .+.|+.|++++|++++. +  ++++++|++|++++|++++  
T Consensus       317 --------------------------------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--  353 (457)
T 3bz5_A          317 --------------------------------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--  353 (457)
T ss_dssp             --------------------------------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred             --------------------------------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence                                                  23488999999999984 3  8999999999999999996  


Q ss_pred             hhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC
Q 041782          676 PSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG  726 (821)
Q Consensus       676 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  726 (821)
                            ++.|+.|++++|.++|.     ..+..|..+++++|+++|.||..
T Consensus       354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence                  35677889999999987     35667888999999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-34  Score=322.29  Aligned_cols=119  Identities=33%  Similarity=0.402  Sum_probs=65.3

Q ss_pred             CCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 041782          177 QTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD  256 (821)
Q Consensus       177 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  256 (821)
                      +++|+.|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++..+  +.++++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            4556666666665532 33 25556666666666666654332  5666666666666666654332  56666666666


Q ss_pred             ccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEEC
Q 041782          257 LSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL  307 (821)
Q Consensus       257 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  307 (821)
                      +++|.+++. +. +.++++|++|++++|.+.+. +   .+..+++|++|++
T Consensus       119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l  163 (466)
T 1o6v_A          119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S---ALSGLTSLQQLSF  163 (466)
T ss_dssp             CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G---GGTTCTTCSEEEE
T ss_pred             CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h---hhccCCcccEeec
Confidence            666665543 22 55566666666666555431 1   1444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-33  Score=317.41  Aligned_cols=347  Identities=27%  Similarity=0.354  Sum_probs=222.8

Q ss_pred             ccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc
Q 041782          110 FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN  189 (821)
Q Consensus       110 ~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~  189 (821)
                      ..+++|+.|+++++.+..                +|.+..+++|++|+|++|.+++..+     +.++++|++|++++|.
T Consensus        43 ~~l~~l~~L~l~~~~i~~----------------l~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n~  101 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS----------------IDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQ  101 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred             hHhccccEEecCCCCCcc----------------CcchhhhcCCCEEECCCCccCCchh-----hhccccCCEEECCCCc
Confidence            568888999888887642                4457778888888888888876543     6778888888888888


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcc
Q 041782          190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS  269 (821)
Q Consensus       190 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  269 (821)
                      +.+..+  +.++++|++|++++|.+++..+  +.++++|++|++++|.+++. + .+.++++|++|+++ |.+.+. + .
T Consensus       102 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~  172 (466)
T 1o6v_A          102 IADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-P  172 (466)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-G
T ss_pred             cccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-h
Confidence            765544  7788888888888888875433  77888888888888887753 3 47788888888886 444433 2 3


Q ss_pred             ccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCC
Q 041782          270 ISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD  349 (821)
Q Consensus       270 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~  349 (821)
                      +.++++|++|++++|.+++.    ..+..+++|++|++++|.+++..+                           ++.++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~  221 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITP---------------------------LGILT  221 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCT
T ss_pred             hccCCCCCEEECcCCcCCCC----hhhccCCCCCEEEecCCccccccc---------------------------ccccC
Confidence            77778888888888877642    226677777777777777665443                           23344


Q ss_pred             ccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeecc
Q 041782          350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVS  429 (821)
Q Consensus       350 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~  429 (821)
                      +|+.|++++|++.+.  ..+..+  ++|++|++++|.+++..+   +..+++|++|++++|.+.+.              
T Consensus       222 ~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--------------  280 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI--GTLASL--TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI--------------  280 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCC--------------
T ss_pred             CCCEEECCCCCcccc--hhhhcC--CCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcc--------------
Confidence            444444444444432  223333  445555555555444432   33445555555555554421              


Q ss_pred             CCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCC
Q 041782          430 NNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNN  509 (821)
Q Consensus       430 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  509 (821)
                              +. +..+++|++|++++|++.+..|        +..+++|++|++++|.+++..|  +..+++|++|++++|
T Consensus       281 --------~~-~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          281 --------SP-LAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             --------GG-GTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred             --------cc-ccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence                    11 4556666666666666665422        3345666777777776665544  566677777777777


Q ss_pred             cCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782          510 QIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG  563 (821)
Q Consensus       510 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g  563 (821)
                      ++++.  ..+..+++|++|++++|++.+..|  .  ..+++|+.|++++|++++
T Consensus       342 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          342 KVSDV--SSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEECCCEEEEC
T ss_pred             ccCCc--hhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEeccCCcccC
Confidence            66665  356667777777777777666554  2  456677777777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=324.74  Aligned_cols=327  Identities=22%  Similarity=0.221  Sum_probs=261.1

Q ss_pred             CeeEEecCCCCCchh-hhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEE
Q 041782          327 KFVFLGLASCNLKEF-LDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL  405 (821)
Q Consensus       327 ~L~~L~L~~~~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  405 (821)
                      +++.|++++|.+..+ +..+..+++|++|+|++|.+.+..|..+.++  ++|++|+|++|.+++.+.. .+..+++|++|
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  109 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGLRSNRLKLIPLG-VFTGLSNLTKL  109 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCSCCTT-SSTTCTTCCEE
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--ccCCEEECCCCcCCccCcc-cccCCCCCCEE
Confidence            334444444444333 3346677778888888887777777777777  7788888888877766654 34566777777


Q ss_pred             EeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCc
Q 041782          406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN  485 (821)
Q Consensus       406 ~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n  485 (821)
                      ++++|.+.+                     ..+..+.++++|++|++++|.+.+..|..      |.++++|++|++++|
T Consensus       110 ~Ls~n~i~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~n  162 (477)
T 2id5_A          110 DISENKIVI---------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRA------FSGLNSLEQLTLEKC  162 (477)
T ss_dssp             ECTTSCCCE---------------------ECTTTTTTCTTCCEEEECCTTCCEECTTS------STTCTTCCEEEEESC
T ss_pred             ECCCCcccc---------------------CChhHccccccCCEEECCCCccceeChhh------ccCCCCCCEEECCCC
Confidence            777776653                     34566788999999999999998876655      455899999999999


Q ss_pred             cccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCC
Q 041782          486 LLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKL  565 (821)
Q Consensus       486 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i  565 (821)
                      .+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++...  ....+|++|++++|+++ .+
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~  239 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AV  239 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SC
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-cc
Confidence            9997777789999999999999999999988899999999999999999888877765  44569999999999998 66


Q ss_pred             ChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccc
Q 041782          566 PSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNN  645 (821)
Q Consensus       566 p~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  645 (821)
                      |...+..                                                             ++.|+.|+|++|
T Consensus       240 ~~~~~~~-------------------------------------------------------------l~~L~~L~Ls~n  258 (477)
T 2id5_A          240 PYLAVRH-------------------------------------------------------------LVYLRFLNLSYN  258 (477)
T ss_dssp             CHHHHTT-------------------------------------------------------------CTTCCEEECCSS
T ss_pred             CHHHhcC-------------------------------------------------------------ccccCeeECCCC
Confidence            6544332                                                             234889999999


Q ss_pred             cccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          646 KLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       646 ~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      .+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+.++.
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence            99988888899999999999999999999999999999999999999999988888899999999999999999987664


Q ss_pred             CCCCCCCCCCccCCCCCCCCCC
Q 041782          726 GKQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       726 ~~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      ...+.......+.++...|..|
T Consensus       339 ~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          339 LWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             HHHHTTTTSSCCTTCCCBEEES
T ss_pred             HhHHhhhhccccCccCceeCCc
Confidence            3333333345566777777655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-34  Score=313.33  Aligned_cols=352  Identities=20%  Similarity=0.205  Sum_probs=221.7

Q ss_pred             ccCCCCCCCCCCCCcc-ccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCC
Q 041782           61 KFASWNLEEEDRDCCS-WDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSS  139 (821)
Q Consensus        61 ~l~~W~~~~~~~~~c~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~  139 (821)
                      .+++|..   +.+||. |.++.|.....+     +...........  .-..++++++|++++|.+.  .+|..+     
T Consensus         2 ~~~~~~~---~~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~--~l~~~~-----   64 (390)
T 3o6n_A            2 NVKPRQP---EYKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGF--EDITLNNQKIVTFKNSTMR--KLPAAL-----   64 (390)
T ss_dssp             -----CC---EECBCC------EEEESCE-----ECSSCCCCEESC--SSGGGCCCSEEEEESCEES--EECTHH-----
T ss_pred             CcCCCCC---ccceehhhhhhccceeeee-----eecccccccccc--cccccCCceEEEecCCchh--hCChhH-----
Confidence            4678976   567775 555555322111     122211111111  2346788999999988874  366543     


Q ss_pred             CcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc
Q 041782          140 FSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP  219 (821)
Q Consensus       140 ~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  219 (821)
                             +..+++|++|+|++|.+++..+   ..+..+++|++|++++|.+.+..|..|+++++|++|++++|.++...+
T Consensus        65 -------~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  134 (390)
T 3o6n_A           65 -------LDSFRQVELLNLNDLQIEEIDT---YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR  134 (390)
T ss_dssp             -------HHHCCCCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -------hcccccCcEEECCCCcccccCh---hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence                   6778899999999999888777   567788888888888888887777778888888888888888885544


Q ss_pred             hhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCC
Q 041782          220 NWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKL  299 (821)
Q Consensus       220 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l  299 (821)
                      ..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++.   .+..+++|++|++++|.+++       +...
T Consensus       135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-------~~~~  204 (390)
T 3o6n_A          135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------LAIP  204 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-------EECC
T ss_pred             HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-------cCCC
Confidence            5568888888888888888877777788888888888888888754   35667888888888887764       3344


Q ss_pred             CCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782          300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF  379 (821)
Q Consensus       300 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~  379 (821)
                      ++|++|++++|.+..++...     .++|+.|++++|.+... .++..+++|++|++++|.+.+..|..+..        
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------  270 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK--------  270 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCC-----CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT--------
T ss_pred             CcceEEECCCCeeeeccccc-----cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc--------
Confidence            57888888888877664422     34555555555555433 23445555555555555555444444444        


Q ss_pred             EEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcc
Q 041782          380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSG  459 (821)
Q Consensus       380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  459 (821)
                                         +++|++|++++|++++                      ++..+..+++|++|++++|++.+
T Consensus       271 -------------------l~~L~~L~L~~n~l~~----------------------~~~~~~~l~~L~~L~L~~n~l~~  309 (390)
T 3o6n_A          271 -------------------MQRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNHLLH  309 (390)
T ss_dssp             -------------------CSSCCEEECCSSCCCE----------------------EECSSSCCTTCCEEECCSSCCCC
T ss_pred             -------------------cccCCEEECCCCcCcc----------------------cCcccCCCCCCCEEECCCCccee
Confidence                               4445555555554432                      12223345566666666666653


Q ss_pred             cCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC
Q 041782          460 VLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       460 ~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  514 (821)
                       +|..+      ..+++|++|++++|.+++. +  +..+++|++|++++|++...
T Consensus       310 -~~~~~------~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          310 -VERNQ------PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -CGGGH------HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -cCccc------cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence             23222      2356666666666666533 2  55566777777777776553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=313.35  Aligned_cols=301  Identities=23%  Similarity=0.223  Sum_probs=177.0

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      ++++|+|++|.+++..+   ..+.++++|++|++++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|
T Consensus        33 ~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQ---DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TCSEEECCSSCCCEECT---TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCcEEECCCCccceECH---hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            45555555555555544   344455555555555555555555556666666666666666654444455566666666


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      ++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++. +. ..+..+++|+.|++++|.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PT-EALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CH-HHHTTCTTCCEEEEESCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-Ch-hHhcccCCCcEEeCCCCc
Confidence            6666666655555566666666666666666655555566666666666666655532 22 234555555555555555


Q ss_pred             cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782          312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD  391 (821)
Q Consensus       312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~  391 (821)
                      +..+...                         .+..+++|+.|++++|...+.+|......                   
T Consensus       188 i~~~~~~-------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-------------------  223 (477)
T 2id5_A          188 INAIRDY-------------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYG-------------------  223 (477)
T ss_dssp             CCEECTT-------------------------CSCSCTTCCEEEEECCTTCCEECTTTTTT-------------------
T ss_pred             CcEeChh-------------------------hcccCcccceeeCCCCccccccCcccccC-------------------
Confidence            5443322                         13444556666666655544433322211                   


Q ss_pred             CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccc
Q 041782          392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF  471 (821)
Q Consensus       392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~  471 (821)
                              .+|++|++++|++++                     ..+..+..+++|++|++++|.+++..+..      |
T Consensus       224 --------~~L~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~  268 (477)
T 2id5_A          224 --------LNLTSLSITHCNLTA---------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSM------L  268 (477)
T ss_dssp             --------CCCSEEEEESSCCCS---------------------CCHHHHTTCTTCCEEECCSSCCCEECTTS------C
T ss_pred             --------ccccEEECcCCcccc---------------------cCHHHhcCccccCeeECCCCcCCccChhh------c
Confidence                    245555555544431                     11235666777788888877777654443      3


Q ss_pred             cCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCc
Q 041782          472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFH  536 (821)
Q Consensus       472 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  536 (821)
                      .++++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            44677777777777777777777777777777777777777776666677777777777777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-34  Score=300.73  Aligned_cols=258  Identities=31%  Similarity=0.469  Sum_probs=230.2

Q ss_pred             ccceeeccCCccCC--CCchhhhCCCCCcEEEcCC-CcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782          422 STIHYLVSNNLLTG--KLAPWLCNLNSLRVLDLSH-NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC  498 (821)
Q Consensus       422 ~l~~l~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  498 (821)
                      .++.+++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..++      .+++|++|++++|.+++.+|..|..+
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh------cCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            34444455555555  6788899999999999995 999999887654      48999999999999999999999999


Q ss_pred             CCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCC-CCcEEEccCCcCccCCChhhhhccchhh
Q 041782          499 TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFP-KLRIIDLSHNRFSGKLPSKYFQCWNAIK  577 (821)
Q Consensus       499 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~l~  577 (821)
                      ++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+  ..++ +|++|++++|++++.+|..+ ..     
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~-----  196 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN-----  196 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG-----
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC-----
Confidence            999999999999999999999999999999999999998888776  5576 99999999999998888542 11     


Q ss_pred             hhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccccc
Q 041782          578 VANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISE  657 (821)
Q Consensus       578 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~  657 (821)
                                                                              ++ |+.|++++|++++.+|..+.+
T Consensus       197 --------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~  219 (313)
T 1ogq_A          197 --------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGS  219 (313)
T ss_dssp             --------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCT
T ss_pred             --------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhc
Confidence                                                                    12 889999999999999999999


Q ss_pred             CCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCcc
Q 041782          658 LKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSF  737 (821)
Q Consensus       658 L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  737 (821)
                      +++|++|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+
T Consensus       220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l  298 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence            99999999999999988777 88999999999999999999999999999999999999999999999888889999999


Q ss_pred             CCCCCCCCCCCCCCC
Q 041782          738 EGNPGLCGKPLSRNC  752 (821)
Q Consensus       738 ~gn~~lc~~~~~~~c  752 (821)
                      .||+++||.|+. .|
T Consensus       299 ~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          299 ANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CSSSEEESTTSS-CC
T ss_pred             cCCCCccCCCCC-CC
Confidence            999999998875 46

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.4e-33  Score=321.65  Aligned_cols=349  Identities=21%  Similarity=0.247  Sum_probs=226.2

Q ss_pred             ccCCCCCCCCCCCCcc----ccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccc
Q 041782           61 KFASWNLEEEDRDCCS----WDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMN  136 (821)
Q Consensus        61 ~l~~W~~~~~~~~~c~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~  136 (821)
                      .+++|.+   +.+||.    |.++.|+.   +   ++-........+    .-..+.+++.|++++|.+.  .+|..+  
T Consensus         8 ~l~~~~~---~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~--~lp~~~--   70 (597)
T 3oja_B            8 NVKPRQP---EYKCIDSNLQYDCVFYDV---H---IDMQTQDVYFGF----EDITLNNQKIVTFKNSTMR--KLPAAL--   70 (597)
T ss_dssp             ---CCCS---EECCCCC--CCSEEECSC---E---ECSSCCCCEESC----SSGGGCCCSEEEESSCEES--EECTHH--
T ss_pred             cccCCCC---CCcCcccCcCceeEecCc---e---ecccccccccCc----ccccCCCceEEEeeCCCCC--CcCHHH--
Confidence            5789987   567774    66665542   1   122121111111    2235678899999988874  355543  


Q ss_pred             cCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCC
Q 041782          137 LSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTG  216 (821)
Q Consensus       137 l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~  216 (821)
                                +..+++|++|+|++|.+++..|   ..++.+++|++|++++|.+.+..|..|+++++|++|+|++|.+++
T Consensus        71 ----------~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (597)
T 3oja_B           71 ----------LDSFRQVELLNLNDLQIEEIDT---YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS  137 (597)
T ss_dssp             ----------HHHCCCCSEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------HccCCCCcEEECCCCCCCCCCh---HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence                      6778889999999999888877   667788888899998888888777778888888899998888886


Q ss_pred             CcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeeccccccc
Q 041782          217 PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELL  296 (821)
Q Consensus       217 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l  296 (821)
                      ..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++.   .++.+++|++|++++|.+++       +
T Consensus       138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-------l  207 (597)
T 3oja_B          138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-------L  207 (597)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-------E
T ss_pred             CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-------c
Confidence            6556678888888888888888888788888888888888888888754   25567888888888887764       3


Q ss_pred             CCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCC
Q 041782          297 PKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGN  376 (821)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~  376 (821)
                      ...++|+.|++++|.++.++...     .++|+.|++++|.+... .++..+++|+.|++++|.+.+..|..+..+    
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l----  277 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM----  277 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC----
T ss_pred             cCCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc----
Confidence            34567888888888877665432     24555555555555332 344455555555555555554444444444    


Q ss_pred             eeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCc
Q 041782          377 LQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF  456 (821)
Q Consensus       377 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  456 (821)
                                             ++|++|++++|.+++                      +|..+..+++|++|+|++|.
T Consensus       278 -----------------------~~L~~L~Ls~N~l~~----------------------l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          278 -----------------------QRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             -----------------------SSCCEEECTTSCCCE----------------------EECSSSCCTTCCEEECCSSC
T ss_pred             -----------------------cCCCEEECCCCCCCC----------------------CCcccccCCCCcEEECCCCC
Confidence                                   445555555444432                      12223345556666666666


Q ss_pred             CcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC
Q 041782          457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       457 l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  514 (821)
                      ++ .+|..+      ..+++|++|++++|.+++. +  +..+++|+.|++++|.+.+.
T Consensus       313 l~-~i~~~~------~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          313 LL-HVERNQ------PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CC-CCGGGH------HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CC-ccCccc------ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence            55 233322      2245666666666666533 2  45556666777777766543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.5e-32  Score=299.58  Aligned_cols=318  Identities=22%  Similarity=0.236  Sum_probs=228.3

Q ss_pred             CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782          149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL  228 (821)
Q Consensus       149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  228 (821)
                      .++++++|++++|.++...+   ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhhCCh---hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            46788999999988887666   556778888888888888877666788888888888888888887777778888888


Q ss_pred             CEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782          229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS  308 (821)
Q Consensus       229 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~  308 (821)
                      ++|++++|.++...+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++. +    +..+++|+.|+++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~  194 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVS  194 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeecc
Confidence            8888888888854444567888888888888888877777788888888888888887642 1    4456667777776


Q ss_pred             CcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782          309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT  388 (821)
Q Consensus       309 ~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~  388 (821)
                      +|.++.+.                              ..++|++|++++|.+.                          
T Consensus       195 ~n~l~~~~------------------------------~~~~L~~L~l~~n~l~--------------------------  218 (390)
T 3o6n_A          195 YNLLSTLA------------------------------IPIAVEELDASHNSIN--------------------------  218 (390)
T ss_dssp             SSCCSEEE------------------------------CCSSCSEEECCSSCCC--------------------------
T ss_pred             cccccccC------------------------------CCCcceEEECCCCeee--------------------------
Confidence            66655321                              1234445555554443                          


Q ss_pred             CCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782          389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS  468 (821)
Q Consensus       389 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~  468 (821)
                      .....    ..++|++|++++|.+++                       ...+..+++|++|++++|.+.+..|..+   
T Consensus       219 ~~~~~----~~~~L~~L~l~~n~l~~-----------------------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---  268 (390)
T 3o6n_A          219 VVRGP----VNVELTILKLQHNNLTD-----------------------TAWLLNYPGLVEVDLSYNELEKIMYHPF---  268 (390)
T ss_dssp             EEECC----CCSSCCEEECCSSCCCC-----------------------CGGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred             ecccc----ccccccEEECCCCCCcc-----------------------cHHHcCCCCccEEECCCCcCCCcChhHc---
Confidence            22111    12445555555555432                       1346667788888888888877766543   


Q ss_pred             ccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC
Q 041782          469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF  548 (821)
Q Consensus       469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  548 (821)
                         ..+++|++|++++|++++ +|..+..+++|++|++++|++++. |..+..+++|++|++++|++... +  .  ..+
T Consensus       269 ---~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~--~~~  338 (390)
T 3o6n_A          269 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--L--STH  338 (390)
T ss_dssp             ---TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--C--CTT
T ss_pred             ---cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--c--hhh
Confidence               447788888888888874 566667788888999988888854 66677888899999999988743 2  2  557


Q ss_pred             CCCcEEEccCCcCccCCChhhh
Q 041782          549 PKLRIIDLSHNRFSGKLPSKYF  570 (821)
Q Consensus       549 ~~L~~L~Ls~N~l~g~ip~~~~  570 (821)
                      ++|+.|++++|++.+.....++
T Consensus       339 ~~L~~L~l~~N~~~~~~~~~~~  360 (390)
T 3o6n_A          339 HTLKNLTLSHNDWDCNSLRALF  360 (390)
T ss_dssp             CCCSEEECCSSCEEHHHHHHHT
T ss_pred             ccCCEEEcCCCCccchhHHHHH
Confidence            8999999999998765443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.1e-32  Score=311.80  Aligned_cols=319  Identities=22%  Similarity=0.233  Sum_probs=239.0

Q ss_pred             CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782          149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL  228 (821)
Q Consensus       149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  228 (821)
                      .+.+++.|++++|.+...++   ..+..+++|++|++++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPA---ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSCEESEECT---HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCCCCCCcCH---HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            46789999999999988777   667788899999999999888777788999999999999999988888888899999


Q ss_pred             CEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782          229 TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS  308 (821)
Q Consensus       229 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~  308 (821)
                      ++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++. +    +..+++|+.|+++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~l~  200 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVS  200 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C----GGGCTTCSEEECC
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C----hhhhhhhhhhhcc
Confidence            9999999998866556678899999999999999888888888888899999988888752 1    4456677777777


Q ss_pred             CcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782          309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT  388 (821)
Q Consensus       309 ~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~  388 (821)
                      +|.++++.                              ..++|+.|++++|.+.                          
T Consensus       201 ~n~l~~l~------------------------------~~~~L~~L~ls~n~l~--------------------------  224 (597)
T 3oja_B          201 YNLLSTLA------------------------------IPIAVEELDASHNSIN--------------------------  224 (597)
T ss_dssp             SSCCSEEE------------------------------CCTTCSEEECCSSCCC--------------------------
T ss_pred             cCcccccc------------------------------CCchhheeeccCCccc--------------------------
Confidence            76655422                              1234455555555443                          


Q ss_pred             CCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCc
Q 041782          389 GFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNS  468 (821)
Q Consensus       389 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~  468 (821)
                      .....    ..++|+.|++++|.+++                       +..+..+++|++|++++|.+.+..|..+   
T Consensus       225 ~~~~~----~~~~L~~L~L~~n~l~~-----------------------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---  274 (597)
T 3oja_B          225 VVRGP----VNVELTILKLQHNNLTD-----------------------TAWLLNYPGLVEVDLSYNELEKIMYHPF---  274 (597)
T ss_dssp             EEECS----CCSCCCEEECCSSCCCC-----------------------CGGGGGCTTCSEEECCSSCCCEEESGGG---
T ss_pred             ccccc----cCCCCCEEECCCCCCCC-----------------------ChhhccCCCCCEEECCCCccCCCCHHHh---
Confidence            22111    11345555555555432                       2356677888888888888887777654   


Q ss_pred             ccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC
Q 041782          469 KIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF  548 (821)
Q Consensus       469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  548 (821)
                         ..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+.+. +  .  ..+
T Consensus       275 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~--~~~  344 (597)
T 3oja_B          275 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--L--STH  344 (597)
T ss_dssp             ---TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--C--CTT
T ss_pred             ---cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--h--hhc
Confidence               347888888888888875 56667778889999999998885 466778888999999999988743 2  2  557


Q ss_pred             CCCcEEEccCCcCccCCChhhhh
Q 041782          549 PKLRIIDLSHNRFSGKLPSKYFQ  571 (821)
Q Consensus       549 ~~L~~L~Ls~N~l~g~ip~~~~~  571 (821)
                      ++|+.|++++|++.+.....++.
T Consensus       345 ~~L~~L~l~~N~~~~~~~~~~~~  367 (597)
T 3oja_B          345 HTLKNLTLSHNDWDCNSLRALFR  367 (597)
T ss_dssp             CCCSEEECCSSCEEHHHHHHHTT
T ss_pred             CCCCEEEeeCCCCCChhHHHHHH
Confidence            89999999999988665444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=1.1e-32  Score=293.79  Aligned_cols=231  Identities=19%  Similarity=0.264  Sum_probs=160.8

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCC-CCCCCCccccceeeCC--------CCCCEEEEEcCCCCC
Q 041782           29 QLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLE-EEDRDCCSWDGVKCNE--------DTGHVIKLNLTSSCI   99 (821)
Q Consensus        29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~-~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l   99 (821)
                      ..+..+|++||++||+++..++.+        .+.+|... ....++|.|.|+.|+.        ...+|+.|+|+++.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~--------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l   93 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNR--------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL   93 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTT--------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             cccCchHHHHHHHHHHhccCCchh--------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc
Confidence            356778999999999998544321        46788310 0157899999999952        336788888888877


Q ss_pred             cccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCC
Q 041782          100 YGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTE  179 (821)
Q Consensus       100 ~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~  179 (821)
                      . .++.  .++++++|++|+|++|.+.  .+|..             ++++++|++|+|++|.++ .+|   ..+.++++
T Consensus        94 ~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~-------------~~~l~~L~~L~Ls~n~l~-~lp---~~l~~l~~  151 (328)
T 4fcg_A           94 P-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDT-------------MQQFAGLETLTLARNPLR-ALP---ASIASLNR  151 (328)
T ss_dssp             S-SCCS--CGGGGTTCSEEEEESSCCC--CCCSC-------------GGGGTTCSEEEEESCCCC-CCC---GGGGGCTT
T ss_pred             h-hcCh--hhhhCCCCCEEECCCCCcc--chhHH-------------HhccCCCCEEECCCCccc-cCc---HHHhcCcC
Confidence            6 5555  6777888888888888775  46665             677778888888888877 455   56777778


Q ss_pred             CCEEecCCccccccCCccccC---------CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782          180 LSWLALANINLIGEFPSWLMN---------LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT  250 (821)
Q Consensus       180 L~~L~L~~n~~~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  250 (821)
                      |++|++++|++.+.+|..+..         +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~  229 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP  229 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCC
Confidence            888888887777777776554         666777777777666 566666666667777777666663 455566666


Q ss_pred             CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecc
Q 041782          251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY  291 (821)
Q Consensus       251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  291 (821)
                      +|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            66666666666666666666666666666666666554433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=7.6e-31  Score=283.10  Aligned_cols=307  Identities=25%  Similarity=0.344  Sum_probs=165.9

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +..+++|++|++++|.+...     ..+..+++|++|++++|.+.+. +. +.++++|++|++++|.++. ++ .+..++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~  110 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLT  110 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT
T ss_pred             chhcccccEEEEeCCccccc-----hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCC
Confidence            44566777777777776543     2255566666666666666432 22 6666666666666666653 22 466666


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEE
Q 041782          227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLF  306 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  306 (821)
                      +|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+    +..+++|++|+
T Consensus       111 ~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~  183 (347)
T 4fmz_A          111 NLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLS  183 (347)
T ss_dssp             TCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEE
T ss_pred             cCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEE
Confidence            666666666666543 22 5566666666666664443322 25556666666666655543211    34445555555


Q ss_pred             CCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCC
Q 041782          307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNL  386 (821)
Q Consensus       307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~  386 (821)
                      +++|.+..+.                          . +..+++|+.|++++|.+.+..+  +.                
T Consensus       184 l~~n~l~~~~--------------------------~-~~~l~~L~~L~l~~n~l~~~~~--~~----------------  218 (347)
T 4fmz_A          184 LNYNQIEDIS--------------------------P-LASLTSLHYFTAYVNQITDITP--VA----------------  218 (347)
T ss_dssp             CTTSCCCCCG--------------------------G-GGGCTTCCEEECCSSCCCCCGG--GG----------------
T ss_pred             ccCCcccccc--------------------------c-ccCCCccceeecccCCCCCCch--hh----------------
Confidence            5544443322                          1 3344455555555554443222  22                


Q ss_pred             CCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcccc
Q 041782          387 ITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLS  466 (821)
Q Consensus       387 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  466 (821)
                                 .+++|++|++++|.+++                      ++. +..+++|++|++++|.+++.      
T Consensus       219 -----------~~~~L~~L~l~~n~l~~----------------------~~~-~~~l~~L~~L~l~~n~l~~~------  258 (347)
T 4fmz_A          219 -----------NMTRLNSLKIGNNKITD----------------------LSP-LANLSQLTWLEIGTNQISDI------  258 (347)
T ss_dssp             -----------GCTTCCEEECCSSCCCC----------------------CGG-GTTCTTCCEEECCSSCCCCC------
T ss_pred             -----------cCCcCCEEEccCCccCC----------------------Ccc-hhcCCCCCEEECCCCccCCC------
Confidence                       33444444444444331                      111 44455566666666655532      


Q ss_pred             CcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccC
Q 041782          467 NSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF  546 (821)
Q Consensus       467 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  546 (821)
                        ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+..++.+++|++|++++|++++..|  .  .
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~--~  330 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L--A  330 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G--G
T ss_pred             --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h--h
Confidence              1234456666666666666543  345666666666666666666666666666666666666666665443  2  4


Q ss_pred             CCCCCcEEEccCCcCc
Q 041782          547 VFPKLRIIDLSHNRFS  562 (821)
Q Consensus       547 ~l~~L~~L~Ls~N~l~  562 (821)
                      .+++|++|++++|+++
T Consensus       331 ~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          331 SLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEESSSCC---
T ss_pred             hhhccceeehhhhccc
Confidence            4666666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.5e-30  Score=277.89  Aligned_cols=308  Identities=24%  Similarity=0.329  Sum_probs=233.9

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      .+..+++|++|+++++.+..                +|.+..+++|++|++++|.+++..+     +..+++|++|++++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~----------------~~~~~~~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~   97 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS----------------IQGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGT   97 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             cchhcccccEEEEeCCcccc----------------chhhhhcCCccEEEccCCccccchh-----hhcCCcCCEEEccC
Confidence            56799999999999998752                4458889999999999999987533     78999999999999


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |.+.+ + ..+.++++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+
T Consensus        98 n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A           98 NKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             SCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             CcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence            99875 4 4699999999999999999854 33 8999999999999997664444 48999999999999999985533


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND  347 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~  347 (821)
                        +..+++|++|++++|.+.+. +   .+..+++|+.|++++|.++....                           +..
T Consensus       173 --~~~l~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~  219 (347)
T 4fmz_A          173 --IANLTDLYSLSLNYNQIEDI-S---PLASLTSLHYFTAYVNQITDITP---------------------------VAN  219 (347)
T ss_dssp             --GGGCTTCSEEECTTSCCCCC-G---GGGGCTTCCEEECCSSCCCCCGG---------------------------GGG
T ss_pred             --hccCCCCCEEEccCCccccc-c---cccCCCccceeecccCCCCCCch---------------------------hhc
Confidence              88999999999999998753 2   27788999999999988775433                           445


Q ss_pred             CCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceee
Q 041782          348 QDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL  427 (821)
Q Consensus       348 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~  427 (821)
                      +++|++|++++|++.+..+  +..+  ++|++|++++|.+++.                                     
T Consensus       220 ~~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~-------------------------------------  258 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITDLSP--LANL--SQLTWLEIGTNQISDI-------------------------------------  258 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTC--TTCCEEECCSSCCCCC-------------------------------------
T ss_pred             CCcCCEEEccCCccCCCcc--hhcC--CCCCEEECCCCccCCC-------------------------------------
Confidence            5677777777777654322  3333  3444444444443322                                     


Q ss_pred             ccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCC
Q 041782          428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG  507 (821)
Q Consensus       428 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  507 (821)
                                 ..+..+++|++|++++|++++. +       .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus       259 -----------~~~~~l~~L~~L~l~~n~l~~~-~-------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          259 -----------NAVKDLTKLKMLNVGSNQISDI-S-------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS  319 (347)
T ss_dssp             -----------GGGTTCTTCCEEECCSSCCCCC-G-------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred             -----------hhHhcCCCcCEEEccCCccCCC-h-------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence                       1244566777777777776643 1       24456778888888888877777778888888888888


Q ss_pred             CCcCCcCCchhhCCCCCCCEEEccCCcCc
Q 041782          508 NNQIADIFPSWLGTLPELKVLMLQFNRFH  536 (821)
Q Consensus       508 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  536 (821)
                      +|++++..|  +..+++|++|++++|.++
T Consensus       320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          320 QNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCccccccC--hhhhhccceeehhhhccc
Confidence            888887755  777888888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.8e-34  Score=319.78  Aligned_cols=98  Identities=21%  Similarity=0.180  Sum_probs=54.2

Q ss_pred             chhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc----CchhhcCCCCCCEEeCCCCcCCc
Q 041782          438 APWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTMLEFLDLGNNQIAD  513 (821)
Q Consensus       438 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~  513 (821)
                      +..+..+++|++|++++|.+.+.....+.. ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|++++
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCP-GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHH-HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHH-HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            445566677777777777766432111110 0112356677777777766643    45556667777777777777655


Q ss_pred             CCchhhCC-----CCCCCEEEccCCcCc
Q 041782          514 IFPSWLGT-----LPELKVLMLQFNRFH  536 (821)
Q Consensus       514 ~~~~~l~~-----l~~L~~L~L~~N~l~  536 (821)
                      ..+..+..     .++|++|++++|.++
T Consensus       299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          299 EGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            43333321     245555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.7e-29  Score=267.79  Aligned_cols=230  Identities=23%  Similarity=0.253  Sum_probs=115.5

Q ss_pred             CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 041782          178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL  257 (821)
Q Consensus       178 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  257 (821)
                      ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|..+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            34555555555554444445555555555555555555555555555556666666655555 3343333  55666666


Q ss_pred             cCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCC
Q 041782          258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCN  337 (821)
Q Consensus       258 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~  337 (821)
                      ++|.+++..+..|.++++|++|++++|.++.....+..+..+ +|++|++++|.++.++..                   
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-------------------  190 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-------------------  190 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-------------------
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-------------------
Confidence            666665444445555666666666666554211111234444 555555555555443221                   


Q ss_pred             CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCC
Q 041782          338 LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP  417 (821)
Q Consensus       338 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  417 (821)
                             +  .++|++|++++|.+.+..+..+..+  ++|++|++++|.+++..+. .+..+++|++|++++|+++    
T Consensus       191 -------~--~~~L~~L~l~~n~i~~~~~~~l~~l--~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~----  254 (332)
T 2ft3_A          191 -------L--PETLNELHLDHNKIQAIELEDLLRY--SKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS----  254 (332)
T ss_dssp             -------S--CSSCSCCBCCSSCCCCCCTTSSTTC--TTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC----
T ss_pred             -------c--cCCCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe----
Confidence                   1  1345555555555555444444444  4455555555544444332 2233344444444444443    


Q ss_pred             CCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCcc
Q 041782          418 IPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQC  464 (821)
Q Consensus       418 ~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  464 (821)
                                        .+|..+..+++|++|++++|++++..+..
T Consensus       255 ------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~  283 (332)
T 2ft3_A          255 ------------------RVPAGLPDLKLLQVVYLHTNNITKVGVND  283 (332)
T ss_dssp             ------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred             ------------------ecChhhhcCccCCEEECCCCCCCccChhH
Confidence                              23344555566666666666665544433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.7e-29  Score=266.16  Aligned_cols=296  Identities=22%  Similarity=0.225  Sum_probs=155.2

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      ++++++++++.++..+.    .+  .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus        32 ~l~~l~~~~~~l~~lp~----~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK----DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCCSCCC----SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCccccCc----cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            56666666666654322    11  2456666666666655555566666666666666666666556666666666666


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      ++++|.++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+.........+..+++|++|++++|.
T Consensus       106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            66666666 3444443  56666777666666555555666666666666666664211111335556666666666665


Q ss_pred             cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCC
Q 041782          312 LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFD  391 (821)
Q Consensus       312 l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~  391 (821)
                      ++.++..                          +  .++|++|++++|++.+..|..+..+  ++|++|++++|.+++..
T Consensus       183 l~~l~~~--------------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          183 ITTIPQG--------------------------L--PPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             CCSCCSS--------------------------C--CTTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEEC
T ss_pred             cccCCcc--------------------------c--cccCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCceeC
Confidence            5543221                          1  1345555555555554444444444  44555555555444433


Q ss_pred             CCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccc
Q 041782          392 RGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIF  471 (821)
Q Consensus       392 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~  471 (821)
                      +. .+..+++|++|++++|+++                      .+|..+..+++|++|++++|++++..+..+......
T Consensus       233 ~~-~~~~l~~L~~L~L~~N~l~----------------------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          233 NG-SLANTPHLRELHLNNNKLV----------------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  289 (330)
T ss_dssp             TT-TGGGSTTCCEEECCSSCCS----------------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             hh-hccCCCCCCEEECCCCcCc----------------------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence            32 1233344444444444443                      233344555555556665555554433333221111


Q ss_pred             cCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCc--CCchhhCCCCCCCEEEccCC
Q 041782          472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD--IFPSWLGTLPELKVLMLQFN  533 (821)
Q Consensus       472 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N  533 (821)
                      ..                        .+.|+.|++++|.+..  +.|..+..+++++.++|++|
T Consensus       290 ~~------------------------~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          290 TK------------------------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TT------------------------SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cc------------------------cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            11                        2445555555555532  34455555556666666555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.5e-32  Score=308.83  Aligned_cols=369  Identities=20%  Similarity=0.154  Sum_probs=206.3

Q ss_pred             CCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCC---CCCccccccCCCcccCCCCCCCCCCCEEEcCCCCC
Q 041782           87 GHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYS---KIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNF  163 (821)
Q Consensus        87 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~  163 (821)
                      .+++.|+|+++.++..... ..+..+++|++|+|++|.+...   .+|..             +..+++|++|+|++|.+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-------------l~~~~~L~~L~Ls~n~l   68 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSA-------------LRVNPALAELNLRSNEL   68 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHH-------------HHTCTTCCEEECTTCCC
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHH-------------HHhCCCcCEEeCCCCcC
Confidence            3678888888887654322 1367788888888888887532   12333             56778888888888887


Q ss_pred             CCCCCCCchhc-cCCC----CCCEEecCCccccc----cCCccccCCCCCCEEEccCCcCCCCcchhhhc-----CCCCC
Q 041782          164 SSPHSASFSWI-AKQT----ELSWLALANINLIG----EFPSWLMNLTQLTYINFDLNQLTGPIPNWLAN-----LNRLT  229 (821)
Q Consensus       164 ~~~~~~~~~~l-~~l~----~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~  229 (821)
                      ++..+   ..+ ..++    +|++|++++|.+..    .++..+.++++|++|++++|.+++..+..+..     .++|+
T Consensus        69 ~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  145 (461)
T 1z7x_W           69 GDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE  145 (461)
T ss_dssp             HHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             ChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence            65433   222 2334    68888888888763    45777888888888888888877544444332     45788


Q ss_pred             EEEccCCcCCCCC----ccccCCCCCCCEEEccCccCCCCCCcccc-----CCCCcCeeccccCCceeec--ccccccCC
Q 041782          230 ILSLKSNQLRGYL----PSQIGSLTQLTALDLSCNQFQGPVPSSIS-----ELKRLEYLDLHSNNLSGNV--YIEELLPK  298 (821)
Q Consensus       230 ~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~--~~~~~l~~  298 (821)
                      +|++++|.+++..    +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..  .....+..
T Consensus       146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  225 (461)
T 1z7x_W          146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  225 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence            8888888877533    45566678888888888877654333332     2557788888887776421  01133556


Q ss_pred             CCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCC----CCcchhccCC
Q 041782          299 LKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGK----IPGWLLNVTT  374 (821)
Q Consensus       299 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~~~~  374 (821)
                      +++|++|++++|.++......+.                    +.....+++|++|++++|.+++.    ++..+..+  
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~--------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~--  283 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELC--------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK--  283 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHH--------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC--
T ss_pred             CCCccEEeccCCcCChHHHHHHH--------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC--
Confidence            77777777777776543221111                    11112344455555555544432    23333333  


Q ss_pred             CCeeEEEcCCCCCCCCCCCccc----cccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEE
Q 041782          375 GNLQFVNLSYNLITGFDRGSVV----LLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVL  450 (821)
Q Consensus       375 ~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L  450 (821)
                      ++|++|++++|.+++.......    ...++|++|++++|.+++...                 ..++..+..+++|++|
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----------------~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-----------------SHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-----------------HHHHHHHHHCSSCCEE
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-----------------HHHHHHHhhCCCccEE
Confidence            4455555555544332211000    111345555555554432100                 0133445556666666


Q ss_pred             EcCCCcCcccCCccccCccccc-CCCcccEEeccCccccc----cCchhhcCCCCCCEEeCCCCcCCc
Q 041782          451 DLSHNFLSGVLPQCLSNSKIFK-NATNLKMIDLSHNLLQG----RIPRSLANCTMLEFLDLGNNQIAD  513 (821)
Q Consensus       451 ~Ls~n~l~~~~p~~l~~~~~~~-~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~  513 (821)
                      ++++|.+++..+..+..  .+. ..++|++|++++|.+++    .+|..+..+++|++|++++|++++
T Consensus       347 ~Ls~n~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          347 QISNNRLEDAGVRELCQ--GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             ECCSSBCHHHHHHHHHH--HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             EccCCccccccHHHHHH--HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            66666665443322211  011 13455555555555543    344444445555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.6e-28  Score=258.49  Aligned_cols=293  Identities=25%  Similarity=0.290  Sum_probs=164.0

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782          179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS  258 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  258 (821)
                      ++++++++++.+. .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5667777766654 4454443  466667777776665555566666666666666666666556666666666666666


Q ss_pred             CccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782          259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL  338 (821)
Q Consensus       259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l  338 (821)
                      +|.++ .+|..+.  ++|++|++++|.+++. +. ..+.++++|++|++++|.++..                       
T Consensus       109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~l~~n~l~~~-----------------------  160 (330)
T 1xku_A          109 KNQLK-ELPEKMP--KTLQELRVHENEITKV-RK-SVFNGLNQMIVVELGTNPLKSS-----------------------  160 (330)
T ss_dssp             SSCCS-BCCSSCC--TTCCEEECCSSCCCBB-CH-HHHTTCTTCCEEECCSSCCCGG-----------------------
T ss_pred             CCcCC-ccChhhc--ccccEEECCCCccccc-CH-hHhcCCccccEEECCCCcCCcc-----------------------
Confidence            66665 3444332  4566666666555532 11 2244444444444444443321                       


Q ss_pred             chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782          339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI  418 (821)
Q Consensus       339 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  418 (821)
                                              +..+..+..+  ++|++|++++|.++.++..    ..++|++|++++|.+++    
T Consensus       161 ------------------------~~~~~~~~~l--~~L~~L~l~~n~l~~l~~~----~~~~L~~L~l~~n~l~~----  206 (330)
T 1xku_A          161 ------------------------GIENGAFQGM--KKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKITK----  206 (330)
T ss_dssp             ------------------------GBCTTGGGGC--TTCCEEECCSSCCCSCCSS----CCTTCSEEECTTSCCCE----
T ss_pred             ------------------------CcChhhccCC--CCcCEEECCCCccccCCcc----ccccCCEEECCCCcCCc----
Confidence                                    1223333333  4444444444444433221    11445555555554432    


Q ss_pred             CCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782          419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC  498 (821)
Q Consensus       419 ~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  498 (821)
                                       ..+..+..+++|++|++++|++++..+..+      ..+++|++|++++|.++ .+|..+..+
T Consensus       207 -----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          207 -----------------VDAASLKGLNNLAKLGLSFNSISAVDNGSL------ANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             -----------------ECTGGGTTCTTCCEEECCSSCCCEECTTTG------GGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             -----------------cCHHHhcCCCCCCEEECCCCcCceeChhhc------cCCCCCCEEECCCCcCc-cCChhhccC
Confidence                             334556677777777777777776655433      34677777777777777 666777777


Q ss_pred             CCCCEEeCCCCcCCcCCchhhCC------CCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782          499 TMLEFLDLGNNQIADIFPSWLGT------LPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR  560 (821)
Q Consensus       499 ~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  560 (821)
                      ++|++|++++|++++..+..+..      .+.|+.|++++|++......+.....+++++.++|++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            77777777777777766655543      256666666666664311111112335666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.7e-28  Score=261.14  Aligned_cols=266  Identities=21%  Similarity=0.283  Sum_probs=128.9

Q ss_pred             CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccc
Q 041782          203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLH  282 (821)
Q Consensus       203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  282 (821)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3555555555554 3443332  355555555555554444455555555555555555554445555555555555555


Q ss_pred             cCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCC
Q 041782          283 SNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIP  362 (821)
Q Consensus       283 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~  362 (821)
                      +|.++ .++. . +.  ++|++|++++|.++.++.                         ..+..+++|++|++++|.+.
T Consensus       111 ~n~l~-~l~~-~-~~--~~L~~L~l~~n~i~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          111 KNHLV-EIPP-N-LP--SSLVELRIHDNRIRKVPK-------------------------GVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             SSCCC-SCCS-S-CC--TTCCEEECCSSCCCCCCS-------------------------GGGSSCSSCCEEECCSCCCB
T ss_pred             CCcCC-ccCc-c-cc--ccCCEEECCCCccCccCH-------------------------hHhCCCccCCEEECCCCccc
Confidence            55544 1221 1 11  344444444444433221                         12455666777777777664


Q ss_pred             C--CCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782          363 G--KIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW  440 (821)
Q Consensus       363 ~--~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~  440 (821)
                      .  ..+..+..+   +|++|++++|.+++++..                         ...+++.+++++|.+++..+..
T Consensus       161 ~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~-------------------------~~~~L~~L~l~~n~i~~~~~~~  212 (332)
T 2ft3_A          161 NSGFEPGAFDGL---KLNYLRISEAKLTGIPKD-------------------------LPETLNELHLDHNKIQAIELED  212 (332)
T ss_dssp             GGGSCTTSSCSC---CCSCCBCCSSBCSSCCSS-------------------------SCSSCSCCBCCSSCCCCCCTTS
T ss_pred             cCCCCcccccCC---ccCEEECcCCCCCccCcc-------------------------ccCCCCEEECCCCcCCccCHHH
Confidence            2  333333222   344444444444433221                         1123333333333333344445


Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      +..+++|++|++++|++.+..+..+      ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.
T Consensus       213 l~~l~~L~~L~L~~N~l~~~~~~~~------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          213 LLRYSKLYRLGLGHNQIRMIENGSL------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             STTCTTCSCCBCCSSCCCCCCTTGG------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             hcCCCCCCEEECCCCcCCcCChhHh------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            5555566666666666555443332      23455566666666555 4555555555566666666555555444443


Q ss_pred             C------CCCCCEEEccCCcCc
Q 041782          521 T------LPELKVLMLQFNRFH  536 (821)
Q Consensus       521 ~------l~~L~~L~L~~N~l~  536 (821)
                      .      .++|+.|++++|++.
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSC
T ss_pred             ccccccccccccceEeecCccc
Confidence            2      234455555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.9e-29  Score=292.95  Aligned_cols=83  Identities=11%  Similarity=0.001  Sum_probs=53.7

Q ss_pred             ccccEEEcccccccC-ccccccccCCCCCEEeCCCcccCcc-hhhhhcCccCCCeEeCCCCcccccCCCCcc-ccCCccE
Q 041782          635 NFLTGIILSNNKLIG-KIPTSISELKGLNCLNLSGNNLLGH-IPSSLGNLTVLESLDLSNNNLSGEIPRQLA-ELTSLAV  711 (821)
Q Consensus       635 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~  711 (821)
                      +.|+.|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|+|++|+++......+. .++.+..
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~  542 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI  542 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence            347777888877765 3444556778888888888887654 444456778888888888887765333332 4555555


Q ss_pred             EEcccC
Q 041782          712 FDVSDN  717 (821)
Q Consensus       712 L~ls~N  717 (821)
                      ..+..+
T Consensus       543 ~~~~~~  548 (592)
T 3ogk_B          543 ELIPSR  548 (592)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=257.72  Aligned_cols=282  Identities=21%  Similarity=0.265  Sum_probs=205.7

Q ss_pred             CCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 041782           71 DRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL  150 (821)
Q Consensus        71 ~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l  150 (821)
                      ...+|.|.|+ |+..          ++.++ .+|.  .+.  ++|++|++++|.+.+  +|...            +.++
T Consensus        26 ~~~~C~~~~~-c~~~----------~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~--~~~~~------------~~~l   75 (353)
T 2z80_A           26 ASLSCDRNGI-CKGS----------SGSLN-SIPS--GLT--EAVKSLDLSNNRITY--ISNSD------------LQRC   75 (353)
T ss_dssp             -CCEECTTSE-EECC----------STTCS-SCCT--TCC--TTCCEEECTTSCCCE--ECTTT------------TTTC
T ss_pred             cCCCCCCCeE-eeCC----------CCCcc-cccc--ccc--ccCcEEECCCCcCcc--cCHHH------------hccC
Confidence            4678999998 7543          33333 2333  333  589999999998863  44321            7889


Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCC
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLT  229 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~  229 (821)
                      ++|++|++++|.+++..+   ..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+ ..+..+++|+
T Consensus        76 ~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCCEEECCCCccCccCH---hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            999999999999998877   667888999999999999976555558899999999999999985433 4788999999


Q ss_pred             EEEccCC-cCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECC
Q 041782          230 ILSLKSN-QLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS  308 (821)
Q Consensus       230 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~  308 (821)
                      +|++++| .+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.. ++. ..+..+++|++|+++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLE-IFVDVTSSVECLELR  230 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHH-HHHHHTTTEEEEEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chh-hhhhhcccccEEECC
Confidence            9999998 4776667889999999999999999998888999999999999999998853 333 345668899999999


Q ss_pred             Ccccceeccccch-hccCCCeeEEecCCCCC-----chhhhhhcCCCccceEecccCCCCCCCCcc-hhccCCCCeeEEE
Q 041782          309 ANNLSLITRNTVN-IRLQNKFVFLGLASCNL-----KEFLDFLNDQDQLELLDLSANKIPGKIPGW-LLNVTTGNLQFVN  381 (821)
Q Consensus       309 ~n~l~~~~~~~~~-~~~~~~L~~L~L~~~~l-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~~~~~~L~~L~  381 (821)
                      +|.+++.....+. ......++.++++++.+     ..+|+++..+++|++|++++|+++ .+|.. +..+  ++|++|+
T Consensus       231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l--~~L~~L~  307 (353)
T 2z80_A          231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL--TSLQKIW  307 (353)
T ss_dssp             SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC--TTCCEEE
T ss_pred             CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC--CCCCEEE
Confidence            9998876544332 12244555666666555     245666777777777777777776 34433 3444  5555555


Q ss_pred             cCCCCCCCC
Q 041782          382 LSYNLITGF  390 (821)
Q Consensus       382 Ls~n~l~~~  390 (821)
                      +++|.+++.
T Consensus       308 L~~N~~~~~  316 (353)
T 2z80_A          308 LHTNPWDCS  316 (353)
T ss_dssp             CCSSCBCCC
T ss_pred             eeCCCccCc
Confidence            555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.2e-26  Score=245.33  Aligned_cols=233  Identities=25%  Similarity=0.240  Sum_probs=191.3

Q ss_pred             cccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccC--CccccCcccccCCCcccEEeccCccccccCchhhcCC
Q 041782          421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL--PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANC  498 (821)
Q Consensus       421 ~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  498 (821)
                      .+++.+++++|.+....+..+.++++|++|++++|+++...  |..      +..+++|++|++++|.++ .+|..+..+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~~L~Ls~n~i~-~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS------DFGTTSLKYLDLSFNGVI-TMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH------HHSCSCCCEEECCSCSEE-EEEEEEETC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc------cccccccCEEECCCCccc-cChhhcCCC
Confidence            34444444444444333445788999999999999987431  222      335789999999999998 577779999


Q ss_pred             CCCCEEeCCCCcCCcCCc-hhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc-CCChhhhhccchh
Q 041782          499 TMLEFLDLGNNQIADIFP-SWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG-KLPSKYFQCWNAI  576 (821)
Q Consensus       499 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~l  576 (821)
                      ++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++ .+|.. +.     
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~-----  172 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT-----  172 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-----
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh-----
Confidence            999999999999998765 678899999999999999988777665  668999999999999875 23321 11     


Q ss_pred             hhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccc
Q 041782          577 KVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSIS  656 (821)
Q Consensus       577 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~  656 (821)
                                                                              .++.|+.|++++|++++..|..+.
T Consensus       173 --------------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~  196 (306)
T 2z66_A          173 --------------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFN  196 (306)
T ss_dssp             --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred             --------------------------------------------------------hCcCCCEEECCCCCcCCcCHHHhc
Confidence                                                                    134589999999999988899999


Q ss_pred             cCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccC-CccEEEcccCcccccCC
Q 041782          657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT-SLAVFDVSDNNLTGQIP  724 (821)
Q Consensus       657 ~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP  724 (821)
                      ++++|++|+|++|++++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|++++.++
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            999999999999999988888899999999999999999999999999984 99999999999998654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.8e-28  Score=284.85  Aligned_cols=419  Identities=14%  Similarity=0.104  Sum_probs=235.9

Q ss_pred             CccccCCCCCCEEEccCCcCC---CCcchhh------------hcCCCCCEEEccCCcCCCCCccccCCC--CCCCEEEc
Q 041782          195 PSWLMNLTQLTYINFDLNQLT---GPIPNWL------------ANLNRLTILSLKSNQLRGYLPSQIGSL--TQLTALDL  257 (821)
Q Consensus       195 p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~L  257 (821)
                      +..+..+++|++|+++++...   +.+|..+            ..+++|++|+|++|.+++..+..+...  .+|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            334556777888888775321   1222211            256666777776666665444444442  23666666


Q ss_pred             cCcc-CCC-CCCccccCCCCcCeeccccCCceeecc--cccccCCCCCCCeEECCCcccceeccccch--hccCCCeeEE
Q 041782          258 SCNQ-FQG-PVPSSISELKRLEYLDLHSNNLSGNVY--IEELLPKLKSLIVLFLSANNLSLITRNTVN--IRLQNKFVFL  331 (821)
Q Consensus       258 s~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L  331 (821)
                      ++|. ++. .++....++++|++|++++|.+++...  .......+++|++|++++|.++++....+.  ...+++|+.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            6654 110 011112355666666666665543211  112234556666666666655432211110  1123444444


Q ss_pred             ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782          332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK  411 (821)
Q Consensus       332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~  411 (821)
                      ++++|.+..++..+..+++|++|+++.+......                        .........+++|+.|+++++.
T Consensus       226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~l~~~~~L~~L~l~~~~  281 (592)
T 3ogk_B          226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM------------------------PEKYMNLVFPRKLCRLGLSYMG  281 (592)
T ss_dssp             ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC------------------------TTSSSCCCCCTTCCEEEETTCC
T ss_pred             eccCccHHHHHHHHhhhhHHHhhcccccccccch------------------------HHHHHHhhccccccccCccccc
Confidence            4444444444444444444444444332111000                        0000112334555555555432


Q ss_pred             ccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC
Q 041782          412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI  491 (821)
Q Consensus       412 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~  491 (821)
                                            .+.+|..+..+++|++|++++|.+++....     ..+..+++|++|+++++-..+.+
T Consensus       282 ----------------------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~-----~~~~~~~~L~~L~L~~~~~~~~l  334 (592)
T 3ogk_B          282 ----------------------PNEMPILFPFAAQIRKLDLLYALLETEDHC-----TLIQKCPNLEVLETRNVIGDRGL  334 (592)
T ss_dssp             ----------------------TTTGGGGGGGGGGCCEEEETTCCCCHHHHH-----HHHTTCTTCCEEEEEGGGHHHHH
T ss_pred             ----------------------hhHHHHHHhhcCCCcEEecCCCcCCHHHHH-----HHHHhCcCCCEEeccCccCHHHH
Confidence                                  124555666777888888888876544221     12345788888888843333334


Q ss_pred             chhhcCCCCCCEEeCCC-----------CcCCcCC-chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEcc--
Q 041782          492 PRSLANCTMLEFLDLGN-----------NQIADIF-PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS--  557 (821)
Q Consensus       492 p~~~~~l~~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls--  557 (821)
                      +..+..+++|++|++++           |.+++.. +.....+++|++|+++.|.+++.....+. ..+++|+.|+++  
T Consensus       335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~L~~L~l~~~  413 (592)
T 3ogk_B          335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG-TYLKNLCDFRLVLL  413 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH-HHCCSCCEEEEEEC
T ss_pred             HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH-hhCCCCcEEEEeec
Confidence            44456778888888883           5555432 22234578888888877777654433321 237788888886  


Q ss_pred             --CCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccc
Q 041782          558 --HNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSN  635 (821)
Q Consensus       558 --~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (821)
                        .|.+++.-....+..   +                                                      ...++
T Consensus       414 ~~~n~l~~~p~~~~~~~---~------------------------------------------------------~~~~~  436 (592)
T 3ogk_B          414 DREERITDLPLDNGVRS---L------------------------------------------------------LIGCK  436 (592)
T ss_dssp             SCCSCCSSCCCHHHHHH---H------------------------------------------------------HHHCT
T ss_pred             CCCccccCchHHHHHHH---H------------------------------------------------------HHhCC
Confidence              556653211100000   0                                                      00134


Q ss_pred             cccEEEccccc--ccCcccccccc-CCCCCEEeCCCcccCc-chhhhhcCccCCCeEeCCCCccccc-CCCCccccCCcc
Q 041782          636 FLTGIILSNNK--LIGKIPTSISE-LKGLNCLNLSGNNLLG-HIPSSLGNLTVLESLDLSNNNLSGE-IPRQLAELTSLA  710 (821)
Q Consensus       636 ~L~~L~Ls~N~--l~~~~p~~l~~-L~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~  710 (821)
                      .|+.|++++|.  +++..+..++. +++|++|+|++|++++ .++..+..+++|++|+|++|.+++. ++.....+++|+
T Consensus       437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  516 (592)
T 3ogk_B          437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR  516 (592)
T ss_dssp             TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence            58899997543  67666666654 8999999999999987 4566778999999999999998765 444456799999


Q ss_pred             EEEcccCccccc
Q 041782          711 VFDVSDNNLTGQ  722 (821)
Q Consensus       711 ~L~ls~N~l~g~  722 (821)
                      +|++++|++++.
T Consensus       517 ~L~ls~n~it~~  528 (592)
T 3ogk_B          517 YLWVQGYRASMT  528 (592)
T ss_dssp             EEEEESCBCCTT
T ss_pred             eeECcCCcCCHH
Confidence            999999998753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8.2e-26  Score=252.54  Aligned_cols=251  Identities=20%  Similarity=0.141  Sum_probs=205.9

Q ss_pred             cEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEec
Q 041782          403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDL  482 (821)
Q Consensus       403 ~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~L  482 (821)
                      ..++.++..++......+..++.|++++|.+++..+..|.++++|++|+|++|++++..|..      |.++++|++|+|
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l~~L~~L~L  130 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA------FNGLASLNTLEL  130 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEEC
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh------ccCcccCCEEEC
Confidence            34444444444332223445556666666666666778899999999999999999876654      455899999999


Q ss_pred             cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCc
Q 041782          483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS  562 (821)
Q Consensus       483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  562 (821)
                      ++|.+++..+..|..+++|++|+|++|+++.+.+..+..+++|++|++++|...+.++... ...+++|++|++++|+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCccc
Confidence            9999997777789999999999999999998888889999999999999966555555432 256899999999999987


Q ss_pred             cCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEc
Q 041782          563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIIL  642 (821)
Q Consensus       563 g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  642 (821)
                      + +|.  +.                                                             .++.|+.|+|
T Consensus       210 ~-~~~--~~-------------------------------------------------------------~l~~L~~L~L  225 (452)
T 3zyi_A          210 D-MPN--LT-------------------------------------------------------------PLVGLEELEM  225 (452)
T ss_dssp             S-CCC--CT-------------------------------------------------------------TCTTCCEEEC
T ss_pred             c-ccc--cc-------------------------------------------------------------ccccccEEEC
Confidence            3 442  10                                                             1345899999


Q ss_pred             ccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccccc
Q 041782          643 SNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQ  722 (821)
Q Consensus       643 s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  722 (821)
                      ++|++++..|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus       226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999988888899999999999999999876


Q ss_pred             CC
Q 041782          723 IP  724 (821)
Q Consensus       723 iP  724 (821)
                      +.
T Consensus       306 C~  307 (452)
T 3zyi_A          306 CD  307 (452)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.2e-26  Score=244.93  Aligned_cols=225  Identities=21%  Similarity=0.261  Sum_probs=187.1

Q ss_pred             CCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE
Q 041782          400 TDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM  479 (821)
Q Consensus       400 ~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~  479 (821)
                      +.+++|++++|.+.                      .+|..+.++++|++|++++|.++ .+|..+      ..+++|++
T Consensus        81 ~~l~~L~L~~n~l~----------------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~------~~l~~L~~  131 (328)
T 4fcg_A           81 PGRVALELRSVPLP----------------------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM------QQFAGLET  131 (328)
T ss_dssp             TTCCEEEEESSCCS----------------------SCCSCGGGGTTCSEEEEESSCCC-CCCSCG------GGGTTCSE
T ss_pred             cceeEEEccCCCch----------------------hcChhhhhCCCCCEEECCCCCcc-chhHHH------hccCCCCE
Confidence            56677777776665                      55667778899999999999988 777654      44788999


Q ss_pred             EeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCC---------CCCCCEEEccCCcCcccCCCCCccCCCCC
Q 041782          480 IDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGT---------LPELKVLMLQFNRFHGEIGEPDTGFVFPK  550 (821)
Q Consensus       480 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  550 (821)
                      |++++|.++ .+|..+..+++|++|++++|++.+.+|..+..         +++|++|++++|+++ .+|..+  ..+++
T Consensus       132 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~  207 (328)
T 4fcg_A          132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQN  207 (328)
T ss_dssp             EEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTT
T ss_pred             EECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCC
Confidence            999999998 77888999999999999998888888877654         899999999999888 666654  66889


Q ss_pred             CcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeec
Q 041782          551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY  630 (821)
Q Consensus       551 L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (821)
                      |++|++++|++++ +|.. +..                                                          
T Consensus       208 L~~L~L~~N~l~~-l~~~-l~~----------------------------------------------------------  227 (328)
T 4fcg_A          208 LKSLKIRNSPLSA-LGPA-IHH----------------------------------------------------------  227 (328)
T ss_dssp             CCEEEEESSCCCC-CCGG-GGG----------------------------------------------------------
T ss_pred             CCEEEccCCCCCc-Cchh-hcc----------------------------------------------------------
Confidence            9999999999884 5543 211                                                          


Q ss_pred             ccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCcc
Q 041782          631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA  710 (821)
Q Consensus       631 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  710 (821)
                         ++.|+.|++++|++.+.+|..++++++|++|+|++|++.+.+|..++++++|++|+|++|++.+.+|..+.++++|+
T Consensus       228 ---l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          228 ---LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             ---CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             ---CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence               33488899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCccc
Q 041782          711 VFDVSDNNLT  720 (821)
Q Consensus       711 ~L~ls~N~l~  720 (821)
                      .+++..|.+.
T Consensus       305 ~l~l~~~~~~  314 (328)
T 4fcg_A          305 IILVPPHLQA  314 (328)
T ss_dssp             EEECCGGGSC
T ss_pred             EEeCCHHHHH
Confidence            9999877665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.1e-27  Score=253.64  Aligned_cols=251  Identities=22%  Similarity=0.224  Sum_probs=200.9

Q ss_pred             ccCCccEEEeccCcccCcCCCC-CcccceeeccCCcc-CCCCchhhh-------CCCCCcEEEcCCCcCcccCCccccCc
Q 041782          398 LWTDLVTLDLRSNKLQGPLPIP-PESTIHYLVSNNLL-TGKLAPWLC-------NLNSLRVLDLSHNFLSGVLPQCLSNS  468 (821)
Q Consensus       398 ~~~~L~~L~L~~n~l~~~~~~~-~~~l~~l~l~~n~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l~~~  468 (821)
                      ..++|++|++++|.+  .+|.. +..++.+++++|.+ ...+|..+.       ++++|++|++++|++++.+|..+.  
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL--  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS--
T ss_pred             cCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH--
Confidence            345566677777766  33332 33467777777777 445666665       789999999999999998887641  


Q ss_pred             ccccCCCcccEEeccCccccccCchhhcCC-----CCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCC--C
Q 041782          469 KIFKNATNLKMIDLSHNLLQGRIPRSLANC-----TMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIG--E  541 (821)
Q Consensus       469 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~  541 (821)
                        +..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.++  .
T Consensus       117 --~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          117 --EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             --SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             --HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence              25689999999999999977 8878776     999999999999999988999999999999999999876532  2


Q ss_pred             CCccCCCCCCcEEEccCCcCcc--CCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeE
Q 041782          542 PDTGFVFPKLRIIDLSHNRFSG--KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI  619 (821)
Q Consensus       542 ~~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  619 (821)
                      ......+++|++|++++|++++  .++...+..                                               
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-----------------------------------------------  226 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-----------------------------------------------  226 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-----------------------------------------------
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-----------------------------------------------
Confidence            2222568999999999999973  222111111                                               


Q ss_pred             EEEecceeeecccccccccEEEcccccccCccc-cccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccccc
Q 041782          620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP-TSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE  698 (821)
Q Consensus       620 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  698 (821)
                                    ++.|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++.
T Consensus       227 --------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          227 --------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             --------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             --------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence                          3458999999999998876 55777999999999999999 7888776  8999999999999976


Q ss_pred             CCCCccccCCccEEEcccCcccc
Q 041782          699 IPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       699 ~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                       |. +..+++|++|++++|++++
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCC
Confidence             66 9999999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.7e-26  Score=246.69  Aligned_cols=106  Identities=24%  Similarity=0.186  Sum_probs=53.1

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782          179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS  258 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  258 (821)
                      +|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44444444444443333345555555555555555554444455555555555555555554333335555555555555


Q ss_pred             CccCCCCCC-ccccCCCCcCeeccccC
Q 041782          259 CNQFQGPVP-SSISELKRLEYLDLHSN  284 (821)
Q Consensus       259 ~n~l~~~~p-~~l~~l~~L~~L~L~~n  284 (821)
                      +|.+++..+ ..+.++++|++|++++|
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCC
Confidence            555553222 24445555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=250.76  Aligned_cols=250  Identities=21%  Similarity=0.160  Sum_probs=202.4

Q ss_pred             EEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEecc
Q 041782          404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS  483 (821)
Q Consensus       404 ~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls  483 (821)
                      .++.++..++......+..++.+++++|.+.+..+..|.++++|++|+|++|++.+..+..      |.++++|++|+|+
T Consensus        47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~------~~~l~~L~~L~L~  120 (440)
T 3zyj_A           47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA------FNGLANLNTLELF  120 (440)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG------GTTCSSCCEEECC
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh------ccCCccCCEEECC
Confidence            3444444443332222344555555555555566677889999999999999998775543      5568999999999


Q ss_pred             CccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782          484 HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG  563 (821)
Q Consensus       484 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g  563 (821)
                      +|.+++..+..|..+++|++|+|++|+++...+..+..+++|++|++++|...+.++... ...+++|++|++++|+++ 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcCc-
Confidence            999997777789999999999999999999888889999999999999966555555432 256899999999999987 


Q ss_pred             CCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcc
Q 041782          564 KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILS  643 (821)
Q Consensus       564 ~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  643 (821)
                      .+|.  +.                                                             .++.|+.|+|+
T Consensus       199 ~~~~--~~-------------------------------------------------------------~l~~L~~L~Ls  215 (440)
T 3zyj_A          199 EIPN--LT-------------------------------------------------------------PLIKLDELDLS  215 (440)
T ss_dssp             SCCC--CT-------------------------------------------------------------TCSSCCEEECT
T ss_pred             cccc--cC-------------------------------------------------------------CCcccCEEECC
Confidence            4542  10                                                             13458999999


Q ss_pred             cccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccC
Q 041782          644 NNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI  723 (821)
Q Consensus       644 ~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  723 (821)
                      +|++++..|..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+
T Consensus       216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            99999988999999999999999999999999999999999999999999999888888999999999999999998765


Q ss_pred             C
Q 041782          724 P  724 (821)
Q Consensus       724 P  724 (821)
                      .
T Consensus       296 ~  296 (440)
T 3zyj_A          296 D  296 (440)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.5e-26  Score=236.09  Aligned_cols=218  Identities=24%  Similarity=0.270  Sum_probs=113.1

Q ss_pred             CchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc-ccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782          437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL-LQGRIPRSLANCTMLEFLDLGNNQIADIF  515 (821)
Q Consensus       437 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  515 (821)
                      .+..+..+++|++|++++|.+++..|..+      .++++|++|++++|. +....|..+..+++|++|++++|++++..
T Consensus        48 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  121 (285)
T 1ozn_A           48 PAASFRACRNLTILWLHSNVLARIDAAAF------TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG  121 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTT------TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CHHHcccCCCCCEEECCCCccceeCHhhc------CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC
Confidence            33445556666666666666655544332      335566666666665 55444555666666666666666666555


Q ss_pred             chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782          516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL  595 (821)
Q Consensus       516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l  595 (821)
                      +..+..+++|++|++++|++.+..+..+  ..+++|++|++++|+++ .+|...+..                       
T Consensus       122 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~-----------------------  175 (285)
T 1ozn_A          122 PGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRIS-SVPERAFRG-----------------------  175 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-EECTTTTTT-----------------------
T ss_pred             HhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCccc-ccCHHHhcC-----------------------
Confidence            5555666666666666666554333323  34555666666665554 222211110                       


Q ss_pred             ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcch
Q 041782          596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI  675 (821)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~i  675 (821)
                                                            ++.|+.|++++|++++..|..|.++++|++|+|++|++++..
T Consensus       176 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          176 --------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             --------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence                                                  122555555555555555555555555555555555555555


Q ss_pred             hhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          676 PSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       676 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      +..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+.+..|.
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            555555555555555555555432211 1112233344455555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.4e-28  Score=258.75  Aligned_cols=206  Identities=24%  Similarity=0.256  Sum_probs=127.5

Q ss_pred             CCCCCCEEecCCccccccCCccc--cCCCCCCEEEccCCcCCCCcchhhhcC-----CCCCEEEccCCcCCCCCccccCC
Q 041782          176 KQTELSWLALANINLIGEFPSWL--MNLTQLTYINFDLNQLTGPIPNWLANL-----NRLTILSLKSNQLRGYLPSQIGS  248 (821)
Q Consensus       176 ~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~  248 (821)
                      ++++|++|++++|.+.+.+|..+  ..+++|++|++++|.+++. |..++.+     ++|++|++++|++++..|..|++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            45566666666666665565554  5666666666666666654 5555555     66666666666666555566666


Q ss_pred             CCCCCEEEccCccCCCC--CCccc--cCCCCcCeeccccCCceee--cccccccCCCCCCCeEECCCcccceeccccchh
Q 041782          249 LTQLTALDLSCNQFQGP--VPSSI--SELKRLEYLDLHSNNLSGN--VYIEELLPKLKSLIVLFLSANNLSLITRNTVNI  322 (821)
Q Consensus       249 l~~L~~L~Ls~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  322 (821)
                      +++|++|++++|++.+.  .|..+  .++++|++|++++|++++.  ++. ..+..+++|++|++++|.+++..+... .
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~  249 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS-ALAAARVQLQGLDLSHNSLRDAAGAPS-C  249 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-HHHHTTCCCSEEECTTSCCCSSCCCSC-C
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-HHHhcCCCCCEEECCCCcCCcccchhh-h
Confidence            66666666666665543  12223  5666666666666666521  111 234456666666666666665442111 1


Q ss_pred             ccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCC
Q 041782          323 RLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF  390 (821)
Q Consensus       323 ~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~  390 (821)
                      ..+++|++|++++|.+..+|..+.  ++|++|++++|++++. |. +..+  ++|++|++++|.+++.
T Consensus       250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l--~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL--PQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS--CEEEEEECTTCTTTCC
T ss_pred             hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhC--CCCCEEeccCCCCCCC
Confidence            134666777777777666666655  7888888888888766 55 6666  7888888888888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.3e-25  Score=248.86  Aligned_cols=251  Identities=20%  Similarity=0.212  Sum_probs=206.7

Q ss_pred             ceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCE
Q 041782          424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF  503 (821)
Q Consensus       424 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  503 (821)
                      ..++.++..++ .+|..+.  +++++|+|++|++++..|..+      .++++|++|++++|.+++..+..|.++++|++
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  127 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTF------RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT  127 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTT------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHc------CCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence            44555666655 4555443  689999999999988766654      55889999999999999888888999999999


Q ss_pred             EeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcccc
Q 041782          504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ  583 (821)
Q Consensus       504 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~  583 (821)
                      |+|++|++++..+..+..+++|++|+|++|++....+..+  ..+++|++|++++|+..+.+|...|..           
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------  194 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-----------  194 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-----------
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC-----------
Confidence            9999999998888888999999999999999986554444  668999999999976655666443222           


Q ss_pred             chhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCE
Q 041782          584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC  663 (821)
Q Consensus       584 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~  663 (821)
                                                                        ++.|+.|+|++|++++ +| .+..+++|++
T Consensus       195 --------------------------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~  222 (452)
T 3zyi_A          195 --------------------------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEE  222 (452)
T ss_dssp             --------------------------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred             --------------------------------------------------CCCCCEEECCCCcccc-cc-cccccccccE
Confidence                                                              3448999999999985 44 5889999999


Q ss_pred             EeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCC
Q 041782          664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPG  742 (821)
Q Consensus       664 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~  742 (821)
                      |+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+....+.+||+
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999654433 3456677788999999


Q ss_pred             CCCCCC
Q 041782          743 LCGKPL  748 (821)
Q Consensus       743 lc~~~~  748 (821)
                      .|++.+
T Consensus       303 ~CdC~~  308 (452)
T 3zyi_A          303 NCDCDI  308 (452)
T ss_dssp             ECSTTT
T ss_pred             CCCCCc
Confidence            998764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-25  Score=238.08  Aligned_cols=253  Identities=26%  Similarity=0.342  Sum_probs=172.6

Q ss_pred             CccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCC
Q 041782           74 CCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKL  153 (821)
Q Consensus        74 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L  153 (821)
                      .|.|.+|.|+..            +++ .+|.  .+  .++|++|+|++|.+.  .+|..+            +.++++|
T Consensus         6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~--~i~~~~------------~~~l~~L   54 (306)
T 2z66_A            6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQ--SLPHGV------------FDKLTQL   54 (306)
T ss_dssp             EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCC--CCCTTT------------TTTCTTC
T ss_pred             eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccC--ccCHhH------------hhccccC
Confidence            389999999643            111 2333  33  378999999999885  366543            6788899


Q ss_pred             CEEEcCCCCCCCCC--CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcc-hhhhcCCCCCE
Q 041782          154 KCLELSQNNFSSPH--SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIP-NWLANLNRLTI  230 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~--~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~  230 (821)
                      ++|+|++|.++...  +   ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++
T Consensus        55 ~~L~L~~n~l~~~~~~~---~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  130 (306)
T 2z66_A           55 TKLSLSSNGLSFKGCCS---QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  130 (306)
T ss_dssp             SEEECCSSCCCEEEEEE---HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE
T ss_pred             CEEECCCCccCcccCcc---cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE
Confidence            99999998887432  3   44556788888888888775 466667788888888888888775544 56777788888


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCccCCC-CCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782          231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG-PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA  309 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  309 (821)
                      |++++|.+++..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+  ..+..+++|++|++++
T Consensus       131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECTT
T ss_pred             EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCCCCCCEEECCC
Confidence            8888888777777777777888888888887765 466677777777777777777765433  2356666666666666


Q ss_pred             cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCC
Q 041782          310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITG  389 (821)
Q Consensus       310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~  389 (821)
                      |.++.+...                         .+..+++|++|++++|++.+..|..+..+. ++|++|++++|.+++
T Consensus       209 N~l~~~~~~-------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          209 NNFFSLDTF-------------------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCSBCCSG-------------------------GGTTCTTCCEEECTTSCCCBCSSSSCCCCC-TTCCEEECTTCCEEC
T ss_pred             CccCccChh-------------------------hccCcccCCEeECCCCCCcccCHHHHHhhh-ccCCEEEccCCCeec
Confidence            666543321                         244566677777777777666665555441 245555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=247.86  Aligned_cols=251  Identities=23%  Similarity=0.250  Sum_probs=207.9

Q ss_pred             ceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCE
Q 041782          424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF  503 (821)
Q Consensus       424 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  503 (821)
                      ..++..+..++ .+|..+.  ++++.|+|++|++.+..+..      |.++++|++|+|++|.+++..+..|.++++|++
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS------FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT------TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH------hhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence            45555666655 4565553  67999999999998776654      456899999999999999888888999999999


Q ss_pred             EeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcccc
Q 041782          504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ  583 (821)
Q Consensus       504 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~  583 (821)
                      |+|++|++++..+..+..+++|++|+|++|++....+..+  ..+++|++|++++|+..+.++...|..           
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------  183 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG-----------  183 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-----------
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc-----------
Confidence            9999999998888889999999999999999986555455  668999999999976655666443322           


Q ss_pred             chhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCE
Q 041782          584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC  663 (821)
Q Consensus       584 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~  663 (821)
                                                                        ++.|+.|+|++|+++ .+| .+..+++|++
T Consensus       184 --------------------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~  211 (440)
T 3zyj_A          184 --------------------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDE  211 (440)
T ss_dssp             --------------------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred             --------------------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence                                                              345899999999998 556 4889999999


Q ss_pred             EeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC-CCCCCCCCCccCCCCC
Q 041782          664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPG  742 (821)
Q Consensus       664 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~  742 (821)
                      |+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|++++|++++..+.. ..+..+....+.+||+
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999655443 3456677788999999


Q ss_pred             CCCCCC
Q 041782          743 LCGKPL  748 (821)
Q Consensus       743 lc~~~~  748 (821)
                      .|++.+
T Consensus       292 ~CdC~l  297 (440)
T 3zyj_A          292 NCNCDI  297 (440)
T ss_dssp             ECSSTT
T ss_pred             cCCCCc
Confidence            998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=6.5e-26  Score=236.99  Aligned_cols=212  Identities=24%  Similarity=0.245  Sum_probs=185.9

Q ss_pred             CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCc-CCcCCchhhCCC
Q 041782          444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ-IADIFPSWLGTL  522 (821)
Q Consensus       444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l  522 (821)
                      .++|++|++++|++++..+..      |..+++|++|++++|.+++..|..|..+++|++|++++|+ +....+..+..+
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l  104 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAAS------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTT------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCcCCccCHHH------cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence            468999999999999876554      4558999999999999998889999999999999999997 888888999999


Q ss_pred             CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782          523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS  602 (821)
Q Consensus       523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  602 (821)
                      ++|++|++++|.+.+..+..+  ..+++|++|++++|+++ .+|...+..                              
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~~~~------------------------------  151 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD------------------------------  151 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT------------------------------
T ss_pred             cCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccc-ccCHhHhcc------------------------------
Confidence            999999999999997666655  67899999999999997 444332221                              


Q ss_pred             cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc
Q 041782          603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL  682 (821)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l  682 (821)
                                                     ++.|+.|++++|++++..+..+.++++|++|+|++|++++..|..|+++
T Consensus       152 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          152 -------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             -------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             -------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence                                           3348999999999997777789999999999999999999999999999


Q ss_pred             cCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          683 TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       683 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      ++|++|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            9999999999999987777899999999999999999987664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.6e-26  Score=245.34  Aligned_cols=266  Identities=25%  Similarity=0.242  Sum_probs=155.0

Q ss_pred             CeeEEecCCCCCchhh-hhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEE
Q 041782          327 KFVFLGLASCNLKEFL-DFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTL  405 (821)
Q Consensus       327 ~L~~L~L~~~~l~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L  405 (821)
                      +++..+++.+.+...+ ..+..+++|++|++++|++.+..|..+..+  ++|++|++++|.+++..+   +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD---LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence            3455666666664443 344566789999999999887777777777  777888887777765443   3445556666


Q ss_pred             EeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCc
Q 041782          406 DLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN  485 (821)
Q Consensus       406 ~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n  485 (821)
                      ++++|.+++.                          ...++|++|++++|++++..+..         +++|++|++++|
T Consensus        86 ~Ls~n~l~~l--------------------------~~~~~L~~L~l~~n~l~~~~~~~---------~~~L~~L~l~~N  130 (317)
T 3o53_A           86 DLNNNYVQEL--------------------------LVGPSIETLHAANNNISRVSCSR---------GQGKKNIYLANN  130 (317)
T ss_dssp             ECCSSEEEEE--------------------------EECTTCCEEECCSSCCSEEEECC---------CSSCEEEECCSS
T ss_pred             ECcCCccccc--------------------------cCCCCcCEEECCCCccCCcCccc---------cCCCCEEECCCC
Confidence            6665555421                          11245566666666555443221         344555555555


Q ss_pred             cccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC-CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccC
Q 041782          486 LLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG-TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK  564 (821)
Q Consensus       486 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~  564 (821)
                      .+++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++.. ..   ..+++              
T Consensus       131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~---~~l~~--------------  192 (317)
T 3o53_A          131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-GQ---VVFAK--------------  192 (317)
T ss_dssp             CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-CC---CCCTT--------------
T ss_pred             CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-cc---ccccc--------------
Confidence            55544444555555555555555555554443332 3444444444444444221 11   11333              


Q ss_pred             CChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEccc
Q 041782          565 LPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSN  644 (821)
Q Consensus       565 ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  644 (821)
                                                                                              |+.|+|++
T Consensus       193 ------------------------------------------------------------------------L~~L~Ls~  200 (317)
T 3o53_A          193 ------------------------------------------------------------------------LKTLDLSS  200 (317)
T ss_dssp             ------------------------------------------------------------------------CCEEECCS
T ss_pred             ------------------------------------------------------------------------CCEEECCC
Confidence                                                                                    55566666


Q ss_pred             ccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCccc-ccCCCCccccCCccEEEcc-cCccccc
Q 041782          645 NKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLS-GEIPRQLAELTSLAVFDVS-DNNLTGQ  722 (821)
Q Consensus       645 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~  722 (821)
                      |++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..+++|+.++++ .+.+.|.
T Consensus       201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            66653 3334666677777777777776 45666667777777777777776 5566666677777777777 3455554


Q ss_pred             CC
Q 041782          723 IP  724 (821)
Q Consensus       723 iP  724 (821)
                      .|
T Consensus       279 ~~  280 (317)
T 3o53_A          279 NE  280 (317)
T ss_dssp             SS
T ss_pred             ch
Confidence            44

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.6e-24  Score=247.93  Aligned_cols=79  Identities=30%  Similarity=0.424  Sum_probs=41.5

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      |+.|++++|++++ +|   ..+++|++|+|++|+++ .+|.   .+++|++|+|++|+|+ .+|..+.++++|+.|++++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            4555555555553 33   23355555555555555 3333   3455555555555555 4455555555555555555


Q ss_pred             CcccccCC
Q 041782          717 NNLTGQIP  724 (821)
Q Consensus       717 N~l~g~iP  724 (821)
                      |++++.+|
T Consensus       294 N~l~~~~~  301 (622)
T 3g06_A          294 NPLSERTL  301 (622)
T ss_dssp             CCCCHHHH
T ss_pred             CCCCCcCH
Confidence            55555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.6e-24  Score=221.63  Aligned_cols=218  Identities=26%  Similarity=0.303  Sum_probs=183.5

Q ss_pred             CCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC
Q 041782           72 RDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT  151 (821)
Q Consensus        72 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~  151 (821)
                      .++|.|.|+.|.-. +.++.++++++.++. +|.  .+.  ++|++|+|++|.+..  +|...            +.+++
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~--~~~~~------------~~~l~   61 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSS--LPSKA------------FHRLT   61 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSC--CCTTS------------SSSCT
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCe--eCHHH------------hcCCC
Confidence            47999999999643 456789999998874 443  333  689999999999863  44321            78899


Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +|++|+|++|.++...+   ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|
T Consensus        62 ~L~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPA---GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             TCCEEECCSSCCSCCCT---TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCccCeeCh---hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence            99999999999998776   556789999999999999987767778999999999999999998888889999999999


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                      ++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|++++ ++. ..+..+++|+.|++++|.
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPE-GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCT-TTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCH-HHhccccCCCEEEecCCC
Confidence            999999997766778999999999999999998777778999999999999999885 333 457889999999999998


Q ss_pred             cce
Q 041782          312 LSL  314 (821)
Q Consensus       312 l~~  314 (821)
                      +..
T Consensus       217 ~~c  219 (270)
T 2o6q_A          217 WDC  219 (270)
T ss_dssp             BCC
T ss_pred             eeC
Confidence            754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-26  Score=243.73  Aligned_cols=152  Identities=22%  Similarity=0.199  Sum_probs=93.1

Q ss_pred             CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782          349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV  428 (821)
Q Consensus       349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l  428 (821)
                      ++|++|++++|++++..+..+..+  ++|++|++++|.+++..+......+++|++|++++|.+++.             
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------  184 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCR--SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------------  184 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGG--SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-------------
T ss_pred             CCCCEEECCCCCCCCccchhhhcc--CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-------------
Confidence            445555555555554444445444  55666666666665554433333456666666666665431             


Q ss_pred             cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCC
Q 041782          429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN  508 (821)
Q Consensus       429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  508 (821)
                               + ....+++|++|++++|++++..+.       +..+++|++|++++|.++ .+|..+..+++|+.|++++
T Consensus       185 ---------~-~~~~l~~L~~L~Ls~N~l~~l~~~-------~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          185 ---------K-GQVVFAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             ---------E-CCCCCTTCCEEECCSSCCCEECGG-------GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred             ---------c-cccccccCCEEECCCCcCCcchhh-------hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence                     1 112356777777777777654322       334677777777777777 4566677777777777777


Q ss_pred             CcCC-cCCchhhCCCCCCCEEEccCC
Q 041782          509 NQIA-DIFPSWLGTLPELKVLMLQFN  533 (821)
Q Consensus       509 n~l~-~~~~~~l~~l~~L~~L~L~~N  533 (821)
                      |++. +..+.++..+++|+.+++++|
T Consensus       247 N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          247 NGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCccCcCHHHHHhccccceEEECCCc
Confidence            7777 556677777777777777744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.4e-23  Score=240.15  Aligned_cols=268  Identities=24%  Similarity=0.269  Sum_probs=172.0

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI  230 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  230 (821)
                      .++++|++++|.++.. |   ..+.  ++|++|++++|.+. .+|.   .+++|++|+|++|.++ .+|.   .+++|++
T Consensus        40 ~~l~~L~ls~n~L~~l-p---~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESGLTTL-P---DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSCCSCC-C---SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCE
T ss_pred             CCCcEEEecCCCcCcc-C---hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCE
Confidence            4699999999999844 4   2222  68888888888875 4555   5678888888888877 4554   5677888


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCc
Q 041782          231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN  310 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  310 (821)
                      |++++|.+++ +|.   .+++|++|++++|.+++ +|..   +++|++|++++|.+++ ++     ..+++|+.|++++|
T Consensus       106 L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~-----~~~~~L~~L~L~~N  171 (622)
T 3g06_A          106 LSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP-----ALPSELCKLWAYNN  171 (622)
T ss_dssp             EEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSS
T ss_pred             EECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC-----CccCCCCEEECCCC
Confidence            8888887774 343   56777888888887774 4443   3677777777777653 11     12345566666665


Q ss_pred             ccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCC
Q 041782          311 NLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF  390 (821)
Q Consensus       311 ~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~  390 (821)
                      .++.+                          |   ..+++|+.|++++|.+++ +|..   .  ++|+.|++++|.++.+
T Consensus       172 ~l~~l--------------------------~---~~~~~L~~L~Ls~N~l~~-l~~~---~--~~L~~L~L~~N~l~~l  216 (622)
T 3g06_A          172 QLTSL--------------------------P---MLPSGLQELSVSDNQLAS-LPTL---P--SELYKLWAYNNRLTSL  216 (622)
T ss_dssp             CCSCC--------------------------C---CCCTTCCEEECCSSCCSC-CCCC---C--TTCCEEECCSSCCSSC
T ss_pred             CCCCC--------------------------c---ccCCCCcEEECCCCCCCC-CCCc---c--chhhEEECcCCccccc
Confidence            55543                          2   223556666666666653 2321   1  4566666666666654


Q ss_pred             CCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCccc
Q 041782          391 DRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI  470 (821)
Q Consensus       391 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~  470 (821)
                      +.     .+++|++|++++|++++                      +|   ..+++|++|++++|+++. +|.       
T Consensus       217 ~~-----~~~~L~~L~Ls~N~L~~----------------------lp---~~l~~L~~L~Ls~N~L~~-lp~-------  258 (622)
T 3g06_A          217 PA-----LPSGLKELIVSGNRLTS----------------------LP---VLPSELKELMVSGNRLTS-LPM-------  258 (622)
T ss_dssp             CC-----CCTTCCEEECCSSCCSC----------------------CC---CCCTTCCEEECCSSCCSC-CCC-------
T ss_pred             CC-----CCCCCCEEEccCCccCc----------------------CC---CCCCcCcEEECCCCCCCc-CCc-------
Confidence            32     12556666666665542                      22   234667777777777763 333       


Q ss_pred             ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCC
Q 041782          471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL  522 (821)
Q Consensus       471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  522 (821)
                        .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus       259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence              1467777777777777 567777777777788888777777766655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=5.4e-27  Score=272.51  Aligned_cols=443  Identities=14%  Similarity=0.090  Sum_probs=222.9

Q ss_pred             CCCCCCCCEEEcCCCCCCC---CCCCCc--------h-hccCCCCCCEEecCCccccccCCcccc-CCCCCCEEEccCC-
Q 041782          147 LGNLTKLKCLELSQNNFSS---PHSASF--------S-WIAKQTELSWLALANINLIGEFPSWLM-NLTQLTYINFDLN-  212 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~---~~~~~~--------~-~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~Ls~n-  212 (821)
                      +..+++|++|+++++....   ..|..+        . ....+++|++|++++|.+.+..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            6778999999999875321   111110        0 123456666666666666555444443 4666666666666 


Q ss_pred             cCCCC-cchhhhcCCCCCEEEccCCcCCCCCccccC----CCCCCCEEEccCccCCCCCCcc----ccCCCCcCeecccc
Q 041782          213 QLTGP-IPNWLANLNRLTILSLKSNQLRGYLPSQIG----SLTQLTALDLSCNQFQGPVPSS----ISELKRLEYLDLHS  283 (821)
Q Consensus       213 ~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~  283 (821)
                      .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++++|. .......    +.++++|++|++++
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence            33321 333344566666666666665544333332    44566666666654 1111111    12345666666665


Q ss_pred             CC-ceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceE-ecccCCC
Q 041782          284 NN-LSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELL-DLSANKI  361 (821)
Q Consensus       284 n~-l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L-~Ls~n~l  361 (821)
                      |. +.+ +  +..+..+++|++|+++.+...                   +..+.+..++..+..+++|+.| .+.+...
T Consensus       221 ~~~~~~-l--~~~~~~~~~L~~L~l~~~~~~-------------------~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~  278 (594)
T 2p1m_B          221 AVPLEK-L--ATLLQRAPQLEELGTGGYTAE-------------------VRPDVYSGLSVALSGCKELRCLSGFWDAVP  278 (594)
T ss_dssp             TSCHHH-H--HHHHHHCTTCSEEECSBCCCC-------------------CCHHHHHHHHHHHHTCTTCCEEECCBTCCG
T ss_pred             CCcHHH-H--HHHHhcCCcceEcccccccCc-------------------cchhhHHHHHHHHhcCCCcccccCCcccch
Confidence            52 222 1  123445555555554433210                   1112223455566677777776 3332211


Q ss_pred             CCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhh
Q 041782          362 PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWL  441 (821)
Q Consensus       362 ~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l  441 (821)
                       +.++..+..+  ++|++|++++|.+++.........+++|++|++++| +...                    .++...
T Consensus       279 -~~l~~~~~~~--~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~--------------------~l~~l~  334 (594)
T 2p1m_B          279 -AYLPAVYSVC--SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA--------------------GLEVLA  334 (594)
T ss_dssp             -GGGGGGHHHH--TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH--------------------HHHHHH
T ss_pred             -hhHHHHHHhh--CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH--------------------HHHHHH
Confidence             1223333334  556666666555443221111223445555555544 2100                    011112


Q ss_pred             hCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhh-cCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL-ANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      ..+++|++|+++++.-.|                     ....+.+++.....+ ..+++|++|+++.|.+++.....+.
T Consensus       335 ~~~~~L~~L~L~~~~~~g---------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~  393 (594)
T 2p1m_B          335 STCKDLRELRVFPSEPFV---------------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA  393 (594)
T ss_dssp             HHCTTCCEEEEECSCTTC---------------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HhCCCCCEEEEecCcccc---------------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence            234555555553221000                     001223332222222 2356666666666666554444443


Q ss_pred             -CCCCCCEEEcc--C----CcCcccCCCC----CccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhccc
Q 041782          521 -TLPELKVLMLQ--F----NRFHGEIGEP----DTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQD  589 (821)
Q Consensus       521 -~l~~L~~L~L~--~----N~l~~~~~~~----~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~  589 (821)
                       .+++|+.|+++  +    +.++. .|..    .....+++|+.|++++ .+++..+..+.                   
T Consensus       394 ~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~-------------------  452 (594)
T 2p1m_B          394 RNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG-------------------  452 (594)
T ss_dssp             HHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH-------------------
T ss_pred             hhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH-------------------
Confidence             35666666666  2    23321 1100    0013467788888866 44432111100                   


Q ss_pred             CCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc-ccCCCCCEEeCCC
Q 041782          590 QPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI-SELKGLNCLNLSG  668 (821)
Q Consensus       590 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~~L~Ls~  668 (821)
                                                                ..++.|+.|+|++|.+++..+..+ .++++|++|+|++
T Consensus       453 ------------------------------------------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~  490 (594)
T 2p1m_B          453 ------------------------------------------TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD  490 (594)
T ss_dssp             ------------------------------------------HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred             ------------------------------------------HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence                                                      012347888888888876655555 6688899999999


Q ss_pred             cccCcchhh-hhcCccCCCeEeCCCCcccccCCCCc-cccCCccEEEcccCccc
Q 041782          669 NNLLGHIPS-SLGNLTVLESLDLSNNNLSGEIPRQL-AELTSLAVFDVSDNNLT  720 (821)
Q Consensus       669 N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~  720 (821)
                      |.+++..+. .+..+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus       491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            988765544 44568889999999998865444444 45677777666665443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.7e-25  Score=246.39  Aligned_cols=148  Identities=26%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782          349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV  428 (821)
Q Consensus       349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l  428 (821)
                      ++|++|+|++|.+.+..|..+..+  ++|++|+|++|.+++..+   +..+++|++|++++|.+++.             
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-------------   95 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-------------   95 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-------------
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-------------
Confidence            478888888888887767777766  667777777777665443   34445555555555554421             


Q ss_pred             cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCC
Q 041782          429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN  508 (821)
Q Consensus       429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  508 (821)
                                   ...++|++|++++|.+++..+..         +++|+.|++++|.+++..|..+..+++|++|+|++
T Consensus        96 -------------~~~~~L~~L~L~~N~l~~~~~~~---------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (487)
T 3oja_A           96 -------------LVGPSIETLHAANNNISRVSCSR---------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL  153 (487)
T ss_dssp             -------------EECTTCCEEECCSSCCCCEEECC---------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred             -------------CCCCCcCEEECcCCcCCCCCccc---------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence                         11245555555555555443221         34455555555555544444555555555555555


Q ss_pred             CcCCcCCchhhC-CCCCCCEEEccCCcCc
Q 041782          509 NQIADIFPSWLG-TLPELKVLMLQFNRFH  536 (821)
Q Consensus       509 n~l~~~~~~~l~-~l~~L~~L~L~~N~l~  536 (821)
                      |.+++..|..+. .+++|++|+|++|.++
T Consensus       154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            555554444443 3444555555544444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.1e-27  Score=270.99  Aligned_cols=415  Identities=14%  Similarity=0.112  Sum_probs=242.8

Q ss_pred             cccCCCCCCEEEccCCcCCC---Cc------------chhhhcCCCCCEEEccCCcCCCCCccccC-CCCCCCEEEccCc
Q 041782          197 WLMNLTQLTYINFDLNQLTG---PI------------PNWLANLNRLTILSLKSNQLRGYLPSQIG-SLTQLTALDLSCN  260 (821)
Q Consensus       197 ~l~~l~~L~~L~Ls~n~l~~---~~------------p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n  260 (821)
                      .+..+++|++|+++++....   ..            +.....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            35567888888888875221   11            12234567778888877777765555554 5777777777777


Q ss_pred             -cCCCC-CCccccCCCCcCeeccccCCceeecc--cccccCCCCCCCeEECCCcccceeccccch--hccCCCeeEEecC
Q 041782          261 -QFQGP-VPSSISELKRLEYLDLHSNNLSGNVY--IEELLPKLKSLIVLFLSANNLSLITRNTVN--IRLQNKFVFLGLA  334 (821)
Q Consensus       261 -~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~L~  334 (821)
                       .+++. ++..+.++++|++|++++|.+++..+  .......+++|++|++++|. ..+....+.  ...+++|+.|+++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence             34321 23333467777777777777654221  11223356677777777665 111111110  1124555556555


Q ss_pred             CCC-CchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEE-eccCcc
Q 041782          335 SCN-LKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLD-LRSNKL  412 (821)
Q Consensus       335 ~~~-l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~-L~~n~l  412 (821)
                      +|. +..++..+..+++|++|+++.+...                   +..+.+.+...  .+..+++|+.|. +.+.. 
T Consensus       220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-------------------~~~~~~~~l~~--~l~~~~~L~~Ls~~~~~~-  277 (594)
T 2p1m_B          220 RAVPLEKLATLLQRAPQLEELGTGGYTAE-------------------VRPDVYSGLSV--ALSGCKELRCLSGFWDAV-  277 (594)
T ss_dssp             TTSCHHHHHHHHHHCTTCSEEECSBCCCC-------------------CCHHHHHHHHH--HHHTCTTCCEEECCBTCC-
T ss_pred             CCCcHHHHHHHHhcCCcceEcccccccCc-------------------cchhhHHHHHH--HHhcCCCcccccCCcccc-
Confidence            552 2445555555555555555443210                   00011111111  123344555552 11110 


Q ss_pred             cCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc-C
Q 041782          413 QGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR-I  491 (821)
Q Consensus       413 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~  491 (821)
                                           .+.++..+..+++|++|++++|.+++.....     .+..+++|++|++++| +.+. +
T Consensus       278 ---------------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~-----~~~~~~~L~~L~l~~~-~~~~~l  330 (594)
T 2p1m_B          278 ---------------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVK-----LLCQCPKLQRLWVLDY-IEDAGL  330 (594)
T ss_dssp             ---------------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHH-----HHTTCTTCCEEEEEGG-GHHHHH
T ss_pred             ---------------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHH-----HHhcCCCcCEEeCcCc-cCHHHH
Confidence                                 1133444556788888888888866432211     2345788888888887 4322 2


Q ss_pred             chhhcCCCCCCEEeCC---------CCcCCcCCchhhC-CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEcc--C-
Q 041782          492 PRSLANCTMLEFLDLG---------NNQIADIFPSWLG-TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLS--H-  558 (821)
Q Consensus       492 p~~~~~l~~L~~L~L~---------~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls--~-  558 (821)
                      +.....+++|++|+++         .+.+++.....+. .+++|++|.+..|.+++....... ..+++|+.|+++  + 
T Consensus       331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~L~~L~L~~~~~  409 (594)
T 2p1m_B          331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCIIEP  409 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTTCCEEEEEESST
T ss_pred             HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCCcceeEeecccC
Confidence            3333457888888883         3455544333333 478888888888877654322221 236888888888  3 


Q ss_pred             ---CcCccCCCh-hhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccc
Q 041782          559 ---NRFSGKLPS-KYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVS  634 (821)
Q Consensus       559 ---N~l~g~ip~-~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (821)
                         |.++ ..|. ..+..                                                         ....+
T Consensus       410 ~~~~~l~-~~~~~~~~~~---------------------------------------------------------l~~~~  431 (594)
T 2p1m_B          410 KAPDYLT-LEPLDIGFGA---------------------------------------------------------IVEHC  431 (594)
T ss_dssp             TCCCTTT-CCCTHHHHHH---------------------------------------------------------HHHHC
T ss_pred             CCccccc-CCchhhHHHH---------------------------------------------------------HHhhC
Confidence               3343 2221 10000                                                         00113


Q ss_pred             ccccEEEcccccccCcccccccc-CCCCCEEeCCCcccCcchhhhh-cCccCCCeEeCCCCcccccCCC-CccccCCccE
Q 041782          635 NFLTGIILSNNKLIGKIPTSISE-LKGLNCLNLSGNNLLGHIPSSL-GNLTVLESLDLSNNNLSGEIPR-QLAELTSLAV  711 (821)
Q Consensus       635 ~~L~~L~Ls~N~l~~~~p~~l~~-L~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~  711 (821)
                      +.|+.|++++ .+++..+..++. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            4589999988 777666666765 8999999999999988777666 7799999999999999765544 4456899999


Q ss_pred             EEcccCcccc
Q 041782          712 FDVSDNNLTG  721 (821)
Q Consensus       712 L~ls~N~l~g  721 (821)
                      |++++|+++.
T Consensus       511 L~l~~~~~~~  520 (594)
T 2p1m_B          511 LWMSSCSVSF  520 (594)
T ss_dssp             EEEESSCCBH
T ss_pred             EeeeCCCCCH
Confidence            9999999853

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=3.3e-23  Score=215.33  Aligned_cols=212  Identities=25%  Similarity=0.205  Sum_probs=172.6

Q ss_pred             CCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC
Q 041782          445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE  524 (821)
Q Consensus       445 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  524 (821)
                      ++|++|++++|++++..+..      |.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYS------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTT------TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCccEEECCCCcccccCHhH------hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence            46889999999888775544      445788999999999988777778888999999999999999888888889999


Q ss_pred             CCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc-CCChhhhhccchhhhhccccchhcccCCCCCcccccCCcc
Q 041782          525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG-KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSS  603 (821)
Q Consensus       525 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  603 (821)
                      |++|++++|.+.+..+..+  ..+++|++|++++|.+++ .+|.. +..                               
T Consensus       102 L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~-------------------------------  147 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN-------------------------------  147 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-------------------------------
T ss_pred             ccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-------------------------------
Confidence            9999999999886555444  668899999999999875 24532 211                               


Q ss_pred             ccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCC----EEeCCCcccCcchhhhh
Q 041782          604 AYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN----CLNLSGNNLLGHIPSSL  679 (821)
Q Consensus       604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~----~L~Ls~N~l~~~ip~~l  679 (821)
                                                    ++.|+.|++++|++++..+..+..+.+|+    +|++++|++++..+..+
T Consensus       148 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~  197 (276)
T 2z62_A          148 ------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF  197 (276)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred             ------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence                                          33488899999999987778888877777    89999999997666655


Q ss_pred             cCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCC
Q 041782          680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK  727 (821)
Q Consensus       680 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  727 (821)
                      . ..+|+.|+|++|++++..+..|..+++|++|++++|+++|.+|.-.
T Consensus       198 ~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          198 K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            4 4589999999999998777778999999999999999999887543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.6e-24  Score=241.53  Aligned_cols=218  Identities=22%  Similarity=0.154  Sum_probs=132.2

Q ss_pred             CCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782          150 LTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       150 l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  229 (821)
                      +++|++|+|++|.+++..|   ..+..+++|++|+|++|.+.+..|  +..+++|++|+|++|.+++..     ..++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISA---ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCG---GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred             CCCccEEEeeCCcCCCCCH---HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence            3466666666666666655   555666666666666666655444  666666777777766666322     226667


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782          230 ILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA  309 (821)
Q Consensus       230 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  309 (821)
                      +|++++|.+++..+.   .+++|++|++++|.+++..|..++.+++|++|++++|.+++..+. .....+++|++|++++
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTT
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCC
Confidence            777777766654433   345667777777777666666666667777777777776654433 3233566777777777


Q ss_pred             cccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCC
Q 041782          310 NNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLIT  388 (821)
Q Consensus       310 n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~  388 (821)
                      |.+++++...    .+++|+.|++++|.+..+|..+..+++|+.|++++|.+++ +|..+..+  ++|+.|++++|.+.
T Consensus       179 N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l--~~L~~L~l~~N~l~  250 (487)
T 3oja_A          179 NFIYDVKGQV----VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFS--QNLEHFDLRGNGFH  250 (487)
T ss_dssp             SCCCEEECCC----CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC--TTCCEEECTTCCBC
T ss_pred             Cccccccccc----cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccC--CCCCEEEcCCCCCc
Confidence            7766654322    2455555555555555555555666666666666666653 44445444  55666666666655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.1e-22  Score=208.31  Aligned_cols=207  Identities=22%  Similarity=0.263  Sum_probs=173.9

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCC
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL  525 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  525 (821)
                      ..+.+++++++++. +|..+        .+++++|++++|.+++..+..|..+++|++|++++|+++.+.+..+..+++|
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~--------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNI--------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCC--------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEEEccCCCCCc-cCCCC--------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            57889999999884 56543        3578999999999987777789999999999999999998877778899999


Q ss_pred             CEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccc
Q 041782          526 KVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAY  605 (821)
Q Consensus       526 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  605 (821)
                      ++|++++|++.+..+..+  ..+++|++|++++|.+++ +|...|..                                 
T Consensus        88 ~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~---------------------------------  131 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKS-LPPRVFDS---------------------------------  131 (270)
T ss_dssp             CEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCC-CCTTTTTT---------------------------------
T ss_pred             CEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCe-eCHHHhCc---------------------------------
Confidence            999999999986544444  568999999999999974 33332221                                 


Q ss_pred             ccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCC
Q 041782          606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVL  685 (821)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L  685 (821)
                                                  ++.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus       132 ----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          132 ----------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence                                        3448899999999997777779999999999999999998888889999999


Q ss_pred             CeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          686 ESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       686 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                      ++|+|++|++++..+..|..+++|+.|++++|++.+.++.
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            9999999999987777899999999999999999987653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7.5e-23  Score=211.84  Aligned_cols=206  Identities=23%  Similarity=0.235  Sum_probs=173.5

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      ....+++|+.|++++|.+... +       .+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~-~-------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~  105 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSV-Q-------GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF  105 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCC-T-------TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ccccccceeeeeeCCCCcccc-c-------ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh
Confidence            356688999999999988743 2       245689999999999999863  478899999999999999999888888


Q ss_pred             CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccccc
Q 041782          520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYIL  599 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~  599 (821)
                      +.+++|++|++++|++.+..+..+  ..+++|++|++++|++++ +|...+..                           
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~---------------------------  155 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQS-LPKGVFDK---------------------------  155 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT---------------------------
T ss_pred             cCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccCc-cCHHHhcc---------------------------
Confidence            999999999999999986655545  568999999999999984 44332221                           


Q ss_pred             CCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhh
Q 041782          600 PSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL  679 (821)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l  679 (821)
                                                        ++.|+.|++++|++++..+..++++++|++|+|++|++++..|..|
T Consensus       156 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          156 ----------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                                              3348899999999998888888999999999999999999888889


Q ss_pred             cCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCC
Q 041782          680 GNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQG  726 (821)
Q Consensus       680 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  726 (821)
                      +.+++|++|++++|.+.+..|       .|+.++++.|+++|.+|..
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             hCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            999999999999999986544       6889999999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.1e-22  Score=210.70  Aligned_cols=210  Identities=25%  Similarity=0.266  Sum_probs=165.0

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      .+..+++|+.|++++|.+..  ++              .+..+++|++|++++|.+++.     ..+..+++|++|++++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--~~--------------~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS--VQ--------------GIQYLPNVRYLALGGNKLHDI-----SALKELTNLTYLILTG   94 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC--CT--------------TGGGCTTCCEEECTTSCCCCC-----GGGTTCTTCCEEECTT
T ss_pred             ccccccceeeeeeCCCCccc--cc--------------ccccCCCCcEEECCCCCCCCc-----hhhcCCCCCCEEECCC
Confidence            56778888899998888752  22              267788889999998888764     4577888888888888


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            88887777778888888888888888887777778888888888888888887777777888888888888888887777


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND  347 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~  347 (821)
                      ..+..+++|++|++++|++++..+  ..+..+++|++|++++|.+.+                                .
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~--------------------------------~  220 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWDC--------------------------------T  220 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC--------------------------------C
T ss_pred             HHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCccc--------------------------------c
Confidence            777888888888888888876433  446778888888888886542                                3


Q ss_pred             CCccceEecccCCCCCCCCcchhcc
Q 041782          348 QDQLELLDLSANKIPGKIPGWLLNV  372 (821)
Q Consensus       348 l~~L~~L~Ls~n~l~~~~p~~l~~~  372 (821)
                      +++|+.|+++.|.++|.+|.+++.+
T Consensus       221 ~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          221 CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CcHHHHHHHHHHhCCCcccCccccc
Confidence            4567777788888888877776655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=6.8e-22  Score=205.37  Aligned_cols=206  Identities=24%  Similarity=0.209  Sum_probs=111.0

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +|++|++++|.+++..+   ..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|
T Consensus        29 ~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            45555555555554444   334445555555555555544444455566666666666666665555556666666666


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCC-CCccccCCCCcCeeccccCCceeecccccccCCCCCCC----eEE
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP-VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLI----VLF  306 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~----~L~  306 (821)
                      ++++|.+++..+..+.++++|++|++++|.+++. +|..+.++++|++|++++|++++..+  ..+..+++|+    .|+
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~l~l~L~  183 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLD  183 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCEEEE
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH--HHhhhhhhccccceeee
Confidence            6666666655454566666666666666666542 45666666666666666666654321  1233333333    666


Q ss_pred             CCCcccceeccccchhccCCCeeEEecCCCCCchhhhh-hcCCCccceEecccCCCCCCC
Q 041782          307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF-LNDQDQLELLDLSANKIPGKI  365 (821)
Q Consensus       307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~  365 (821)
                      +++|.++.+++..+.   ..+|+.|++++|.+..+|.. +..+++|+.|++++|.+.+..
T Consensus       184 ls~n~l~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          184 LSLNPMNFIQPGAFK---EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCSSCCCEECTTSSC---SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cCCCcccccCccccC---CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            666666665544332   22444444444444333322 344555555555555555433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=215.11  Aligned_cols=210  Identities=21%  Similarity=0.200  Sum_probs=168.2

Q ss_pred             CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCc----hhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          444 LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP----RSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       444 l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      +++|++|++++|++.+..|..+..    ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  165 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV  165 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred             cCceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence            467999999999999888876411    457899999999999987655    445679999999999999999988999


Q ss_pred             CCCCCCCEEEccCCcCccc--CCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCccc
Q 041782          520 GTLPELKVLMLQFNRFHGE--IGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNY  597 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~  597 (821)
                      +.+++|++|+|++|++.+.  ++.......+++|++|++++|+++ .+|.....-+                        
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------------------------  220 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA------------------------  220 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH------------------------
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH------------------------
Confidence            9999999999999998753  322332256899999999999996 3332100000                        


Q ss_pred             ccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccC---CCCCEEeCCCcccCcc
Q 041782          598 ILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISEL---KGLNCLNLSGNNLLGH  674 (821)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L---~~L~~L~Ls~N~l~~~  674 (821)
                                                        ..++.|+.|||++|++++.+|..+..+   ++|++|+|++|+++ .
T Consensus       221 ----------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~  265 (310)
T 4glp_A          221 ----------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q  265 (310)
T ss_dssp             ----------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred             ----------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c
Confidence                                              013448999999999999889888877   69999999999999 7


Q ss_pred             hhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782          675 IPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       675 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                      +|..+.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            787764  8999999999999974 43 6788999999999999974

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.6e-22  Score=206.86  Aligned_cols=206  Identities=26%  Similarity=0.301  Sum_probs=173.1

Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      +.++++++++++++|.++. +|..+        .++++.|++++|.+++..+..|..+++|++|++++|++++..+  .+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~--------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~   74 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG   74 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred             ccccCCccEEECCCCCCCc-CCCCC--------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC
Confidence            5667899999999999984 45443        3689999999999998888899999999999999999988744  37


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782          521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP  600 (821)
Q Consensus       521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~  600 (821)
                      .+++|++|++++|++. .+|..+  ..+++|++|++++|+++ .+|...|..                            
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~-~l~~~~~~~----------------------------  122 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVSFNRLT-SLPLGALRG----------------------------  122 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECCSSCCC-CCCSSTTTT----------------------------
T ss_pred             CCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECCCCcCc-ccCHHHHcC----------------------------
Confidence            8999999999999998 556554  67899999999999998 444332222                            


Q ss_pred             CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782          601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG  680 (821)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~  680 (821)
                                                       ++.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.
T Consensus       123 ---------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  169 (290)
T 1p9a_G          123 ---------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN  169 (290)
T ss_dssp             ---------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred             ---------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence                                             33488999999999987777889999999999999999977777789


Q ss_pred             CccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccC
Q 041782          681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI  723 (821)
Q Consensus       681 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  723 (821)
                      .+++|++|+|++|+++ .+|..+..+.+|+.+++++|++.+.+
T Consensus       170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            9999999999999998 67888888889999999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.7e-22  Score=206.24  Aligned_cols=206  Identities=27%  Similarity=0.277  Sum_probs=175.6

Q ss_pred             ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCC
Q 041782          471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPK  550 (821)
Q Consensus       471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  550 (821)
                      +..+++++++++++|.++ .+|..+.  +++++|++++|++++..+..+..+++|++|++++|.+++..+.    ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence            455789999999999998 5666554  7899999999999999889999999999999999999865432    56899


Q ss_pred             CcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeec
Q 041782          551 LRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY  630 (821)
Q Consensus       551 L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (821)
                      |++|++++|+++ .+|.. +.                                                           
T Consensus        79 L~~L~Ls~N~l~-~l~~~-~~-----------------------------------------------------------   97 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLL-GQ-----------------------------------------------------------   97 (290)
T ss_dssp             CCEEECCSSCCS-SCCCC-TT-----------------------------------------------------------
T ss_pred             CCEEECCCCcCC-cCchh-hc-----------------------------------------------------------
Confidence            999999999997 56532 11                                                           


Q ss_pred             ccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCcc
Q 041782          631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA  710 (821)
Q Consensus       631 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  710 (821)
                        .++.|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+
T Consensus        98 --~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G           98 --TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             --TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             --cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence              134589999999999988888999999999999999999988888899999999999999999987777789999999


Q ss_pred             EEEcccCcccccCCCC-CCCCCCCCCccCCCCCCCCCC
Q 041782          711 VFDVSDNNLTGQIPQG-KQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       711 ~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      +|++++|+++ .+|.+ .....+....+.|||+.|++.
T Consensus       176 ~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             EEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            9999999999 56654 334456677789999999764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8.6e-22  Score=201.30  Aligned_cols=190  Identities=27%  Similarity=0.322  Sum_probs=114.5

Q ss_pred             CCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCC
Q 041782           73 DCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK  152 (821)
Q Consensus        73 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~  152 (821)
                      +||.|.|.+|...   .+.++++++.+.. +|.  .+.  ++|++|+|++|.+.+. .|..             +.++++
T Consensus         3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~-------------~~~l~~   60 (251)
T 3m19_A            3 TCETVTGCTCNEG---KKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDAT-------------FRGLTK   60 (251)
T ss_dssp             -CHHHHSSEEEGG---GTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTT-------------TTTCTT
T ss_pred             cCCCCCceEcCCC---CeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhH-------------hcCccc
Confidence            6899999999532   3356777776652 332  222  4667777777766431 1112             566667


Q ss_pred             CCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEE
Q 041782          153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS  232 (821)
Q Consensus       153 L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  232 (821)
                      |++|+|++|.+++..+   ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        61 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSA---GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCccCH---hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            7777777777666655   4455566666666666666555555556666666666666666654444556666666666


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782          233 LKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       233 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  287 (821)
                      +++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            6666666554445666666666666666666555555555566666666665554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.2e-21  Score=200.36  Aligned_cols=211  Identities=21%  Similarity=0.245  Sum_probs=130.3

Q ss_pred             ccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEc
Q 041782          477 LKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL  556 (821)
Q Consensus       477 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  556 (821)
                      .++++++++.++ .+|..+.  ++++.|++++|++++..+..+..+++|++|+|++|.+.+..+..+  ..+++|++|++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEEC
Confidence            445555555554 3343332  355555555555555555555555666666666665554443333  44566666666


Q ss_pred             cCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeeccccccc
Q 041782          557 SHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNF  636 (821)
Q Consensus       557 s~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (821)
                      ++|+++ .+|...|..                                                             ++.
T Consensus        91 ~~n~l~-~~~~~~~~~-------------------------------------------------------------l~~  108 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDH-------------------------------------------------------------LTQ  108 (251)
T ss_dssp             TTSCCC-CCCTTTTTT-------------------------------------------------------------CTT
T ss_pred             CCCccc-ccChhHhcc-------------------------------------------------------------cCC
Confidence            666665 333222211                                                             223


Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      |+.|+|++|++++..+..|.++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|++|++++
T Consensus       109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            67777777777766666678888899999999999877777888889999999999999888777888889999999999


Q ss_pred             CcccccCCCCCCCCCC------CCCccCCCCCCCCCCCCCCCCCC
Q 041782          717 NNLTGQIPQGKQFNTF------ENSSFEGNPGLCGKPLSRNCEIS  755 (821)
Q Consensus       717 N~l~g~iP~~~~~~~~------~~~~~~gn~~lc~~~~~~~c~~~  755 (821)
                      |++++..+....+..+      ......|+ .+|+.|....|..+
T Consensus       189 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          189 NQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             CceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            9998864432111111      11122343 36777777778644

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=6.7e-23  Score=221.70  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             hhhhC-CCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC-------chhhcCCCCCCEEeCCCCc
Q 041782          439 PWLCN-LNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-------PRSLANCTMLEFLDLGNNQ  510 (821)
Q Consensus       439 ~~l~~-l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~L~~n~  510 (821)
                      ..+.. .++|++|++++|.+++..+..+.  ..+..+++|++|++++|.+.+..       +..+..+++|+.||+++|+
T Consensus       218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          218 YIFSSIPNHVVSLNLCLNCLHGPSLENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHSCTTCCEEECCSSCCCCCCHHHHH--HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHhcCCCCceEEECcCCCCCcHHHHHHH--HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            34444 34777777777777665443322  23455677777777777754332       2345566677777777777


Q ss_pred             CCcCCc
Q 041782          511 IADIFP  516 (821)
Q Consensus       511 l~~~~~  516 (821)
                      +.+..+
T Consensus       296 l~~~~~  301 (362)
T 3goz_A          296 IHPSHS  301 (362)
T ss_dssp             CCGGGC
T ss_pred             CCCcch
Confidence            765533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.1e-23  Score=220.66  Aligned_cols=213  Identities=17%  Similarity=0.198  Sum_probs=171.5

Q ss_pred             CCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccC--CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCC
Q 041782           72 RDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHL--RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGN  149 (821)
Q Consensus        72 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~  149 (821)
                      .-|.+|.++.|+.  ..++.++++++.+.+.     .+..+  ++++.|++++|.+.+  .+..             +..
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~--~~~~-------------~~~   91 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQ--PLAE-------------HFS   91 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECS--CCCS-------------CCC
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCccccc--cchh-------------hcc
Confidence            4677899999863  4588999999877632     56666  899999999998864  2222             667


Q ss_pred             CCCCCEEEcCCCCCCCC-CCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCC-cCCC-CcchhhhcCC
Q 041782          150 LTKLKCLELSQNNFSSP-HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLN-QLTG-PIPNWLANLN  226 (821)
Q Consensus       150 l~~L~~L~Ls~n~~~~~-~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~-~~p~~~~~l~  226 (821)
                      +++|++|++++|.+++. .+   ..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+..++
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~---~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCCCEEEccCCCcCHHHHH---HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            89999999999998765 55   56788999999999999988888888999999999999999 6775 3677788999


Q ss_pred             CCCEEEccCC-cCCCC-CccccCCCC-CCCEEEccCc--cCC-CCCCccccCCCCcCeeccccCC-ceeecccccccCCC
Q 041782          227 RLTILSLKSN-QLRGY-LPSQIGSLT-QLTALDLSCN--QFQ-GPVPSSISELKRLEYLDLHSNN-LSGNVYIEELLPKL  299 (821)
Q Consensus       227 ~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l  299 (821)
                      +|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+.++++|++|++++|. +++..+  ..+..+
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~l~~l  246 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--QEFFQL  246 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--GGGGGC
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH--HHHhCC
Confidence            9999999999 88854 567788899 9999999999  455 3456677789999999999998 554333  247788


Q ss_pred             CCCCeEECCCcc
Q 041782          300 KSLIVLFLSANN  311 (821)
Q Consensus       300 ~~L~~L~L~~n~  311 (821)
                      ++|++|++++|.
T Consensus       247 ~~L~~L~l~~~~  258 (336)
T 2ast_B          247 NYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCEEECTTCT
T ss_pred             CCCCEeeCCCCC
Confidence            999999998885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.5e-22  Score=218.89  Aligned_cols=119  Identities=17%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCC-CcccEEeccCcccccc----CchhhcC-CCCCCEEeCCCCcCCcCCc---
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNA-TNLKMIDLSHNLLQGR----IPRSLAN-CTMLEFLDLGNNQIADIFP---  516 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~~---  516 (821)
                      +|++|++++|++++..+..++.  .+..+ ++|++|++++|.+++.    ++..+.. .++|++|+|++|++++..+   
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHH--HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence            5666666666665544433221  12233 3666666666666642    3444544 3578888888888877654   


Q ss_pred             -hhhCCCCCCCEEEccCCcCccc-------CCCCCccCCCCCCcEEEccCCcCccCCChh
Q 041782          517 -SWLGTLPELKVLMLQFNRFHGE-------IGEPDTGFVFPKLRIIDLSHNRFSGKLPSK  568 (821)
Q Consensus       517 -~~l~~l~~L~~L~L~~N~l~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~  568 (821)
                       ..+..+++|++|++++|.+.+.       ++..+  ..+++|+.||+++|++.+..+..
T Consensus       246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~l~~~~~~~  303 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKEIHPSHSIP  303 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCBCCGGGCHH
T ss_pred             HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCcCCCcchHH
Confidence             3345678888888888874322       11222  45788999999999998765544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.3e-23  Score=226.54  Aligned_cols=88  Identities=15%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             cccEEEccccccc----CccccccccCCCCCEEeCCCcccCcc----hhhhhcC--ccCCCeEeCCCCcccc----cCCC
Q 041782          636 FLTGIILSNNKLI----GKIPTSISELKGLNCLNLSGNNLLGH----IPSSLGN--LTVLESLDLSNNNLSG----EIPR  701 (821)
Q Consensus       636 ~L~~L~Ls~N~l~----~~~p~~l~~L~~L~~L~Ls~N~l~~~----ip~~l~~--l~~L~~L~Ls~N~l~~----~~p~  701 (821)
                      .|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+..  +++|++|+|++|.+++    .+|.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            3666666666664    45666666777777777777777655    4555533  6777777777777776    3666


Q ss_pred             Cc-cccCCccEEEcccCcccccC
Q 041782          702 QL-AELTSLAVFDVSDNNLTGQI  723 (821)
Q Consensus       702 ~l-~~l~~L~~L~ls~N~l~g~i  723 (821)
                      .+ .++++|++|++++|++++..
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHhcCCCceEEEccCCcCCcch
Confidence            55 45677777777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=206.83  Aligned_cols=234  Identities=17%  Similarity=0.137  Sum_probs=154.4

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccc--cCCCCCCEEEccCCcCCCCcc----hhhhc
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWL--MNLTQLTYINFDLNQLTGPIP----NWLAN  224 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~~~~  224 (821)
                      ..++.|.+.++.++...-..+.....+++|++|++++|.+.+..|..+  .++++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            357777777776653211000112234568888888888888888777  788888888888888886544    34557


Q ss_pred             CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCC--C--CccccCCCCcCeeccccCCceeecccc-cccCCC
Q 041782          225 LNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP--V--PSSISELKRLEYLDLHSNNLSGNVYIE-ELLPKL  299 (821)
Q Consensus       225 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~~~~~~~-~~l~~l  299 (821)
                      +++|++|++++|.+++..|..|.++++|++|++++|++.+.  +  +..+.++++|++|++++|+++...... ..+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            88888888888888877778888888888888888887642  1  223467888888888888886321110 124677


Q ss_pred             CCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeE
Q 041782          300 KSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQF  379 (821)
Q Consensus       300 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~  379 (821)
                      ++|++|++++|.+++..+..+.                      .+..+++|++|++++|+++ .+|..+.    ++|++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~----------------------~~~~~~~L~~L~Ls~N~l~-~lp~~~~----~~L~~  276 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAP----------------------RCMWSSALNSLNLSFAGLE-QVPKGLP----AKLRV  276 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCS----------------------SCCCCTTCCCEECCSSCCC-SCCSCCC----SCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHH----------------------hccCcCcCCEEECCCCCCC-chhhhhc----CCCCE
Confidence            8888888888888776433221                      0112256666666666666 4454442    46677


Q ss_pred             EEcCCCCCCCCCCCccccccCCccEEEeccCcccC
Q 041782          380 VNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQG  414 (821)
Q Consensus       380 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  414 (821)
                      |+|++|++++.+.   ...+++|++|++++|+++.
T Consensus       277 L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          277 LDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             EECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred             EECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence            7777777766532   3455677777777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=4.2e-20  Score=194.66  Aligned_cols=195  Identities=21%  Similarity=0.302  Sum_probs=162.4

Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      ...+++|++|++++|.+... |       .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-------~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~  104 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA  104 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-------hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc
Confidence            45678899999999988753 3       24568999999999999986544  89999999999999999886  3688


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782          521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP  600 (821)
Q Consensus       521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~  600 (821)
                      .+++|++|++++|++.+. +.   ...+++|++|++++|.+++ ++.  +..                            
T Consensus       105 ~l~~L~~L~l~~n~l~~~-~~---l~~l~~L~~L~l~~n~l~~-~~~--l~~----------------------------  149 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDV-TP---LAGLSNLQVLYLDLNQITN-ISP--LAG----------------------------  149 (308)
T ss_dssp             TCTTCCEEECTTSCCCCC-GG---GTTCTTCCEEECCSSCCCC-CGG--GGG----------------------------
T ss_pred             CCCCCCEEECCCCCCCCc-hh---hcCCCCCCEEECCCCccCc-Ccc--ccC----------------------------
Confidence            999999999999999863 32   3678999999999999974 332  111                            


Q ss_pred             CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782          601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG  680 (821)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~  680 (821)
                                                       ++.|+.|++++|++++..+  +.++++|++|+|++|++++..+  +.
T Consensus       150 ---------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~  192 (308)
T 1h6u_A          150 ---------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LA  192 (308)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GG
T ss_pred             ---------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hc
Confidence                                             3348899999999996444  8999999999999999996654  89


Q ss_pred             CccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782          681 NLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       681 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                      .+++|++|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       193 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            99999999999999997654  8899999999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=2.3e-22  Score=219.74  Aligned_cols=95  Identities=22%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcc----hhhhcCCCCCEEEccCCc---CCCCCcccc-------CCCCCCCEEEcc
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIP----NWLANLNRLTILSLKSNQ---LRGYLPSQI-------GSLTQLTALDLS  258 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~Ls  258 (821)
                      .++..+..+++|++|+|++|.++...+    ..+..+++|++|+|++|.   +++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344555566666666666666654432    234456666666666643   333444433       556666666666


Q ss_pred             CccCCC----CCCccccCCCCcCeeccccCCce
Q 041782          259 CNQFQG----PVPSSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       259 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~  287 (821)
                      +|.+.+    .+|..+.++++|++|++++|.++
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            666654    23444455555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=8.8e-21  Score=192.32  Aligned_cols=86  Identities=26%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcc-ccccCchhhcCCCCCCEEeCCC-CcCCcCCchhhCCCC
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL-LQGRIPRSLANCTMLEFLDLGN-NQIADIFPSWLGTLP  523 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~  523 (821)
                      +|++|++++|++++..+..      |.++++|++|++++|. +++..+..|..+++|++|++++ |++++..+..|..++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHA------FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TCCEEEEESCCCSEECTTT------TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             cccEEEEeCCcceEECHHH------ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            5556666665555443322      2335555555555554 5444444555555555555555 555555445555555


Q ss_pred             CCCEEEccCCcCcc
Q 041782          524 ELKVLMLQFNRFHG  537 (821)
Q Consensus       524 ~L~~L~L~~N~l~~  537 (821)
                      +|++|++++|++++
T Consensus       106 ~L~~L~l~~n~l~~  119 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM  119 (239)
T ss_dssp             TCCEEEEEEECCCS
T ss_pred             CCCEEeCCCCCCcc
Confidence            55555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2.6e-20  Score=188.84  Aligned_cols=196  Identities=18%  Similarity=0.185  Sum_probs=104.3

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc-ccccCCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCC
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN-LIGEFPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~  229 (821)
                      +|++|++++|++++..+   ..+..+++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            56666666666665554   344555555555555554 4333333555666666666665 566544445555666666


Q ss_pred             EEEccCCcCCCCCccccCCCCCCC---EEEccCc-cCCCCCCccccCCCCcC-eeccccCCceeecccccccCCCCCCCe
Q 041782          230 ILSLKSNQLRGYLPSQIGSLTQLT---ALDLSCN-QFQGPVPSSISELKRLE-YLDLHSNNLSGNVYIEELLPKLKSLIV  304 (821)
Q Consensus       230 ~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~l~~l~~L~~  304 (821)
                      +|++++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|+++ .++. ..+.. ++|++
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~-~~~~~-~~L~~  183 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNG-TKLDA  183 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-TTTTT-CEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-hhcCC-CCCCE
Confidence            66666666554 443 55555555   6666666 55544444455555555 5555555554 2332 22222 44555


Q ss_pred             EECCCcc-cceeccccchhccCCCeeEEecCCCCCchhhhhhcCC-CccceEecccCCCCCCCCcchhccCCCCeeEEEc
Q 041782          305 LFLSANN-LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ-DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNL  382 (821)
Q Consensus       305 L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~L  382 (821)
                      |++++|. ++.+++.                         .+..+ ++|+.|++++|++++..+.   .+  ++|+.|++
T Consensus       184 L~L~~n~~l~~i~~~-------------------------~~~~l~~~L~~L~l~~N~l~~l~~~---~~--~~L~~L~l  233 (239)
T 2xwt_C          184 VYLNKNKYLTVIDKD-------------------------AFGGVYSGPSLLDVSQTSVTALPSK---GL--EHLKELIA  233 (239)
T ss_dssp             EECTTCTTCCEECTT-------------------------TTTTCSBCCSEEECTTCCCCCCCCT---TC--TTCSEEEC
T ss_pred             EEcCCCCCcccCCHH-------------------------HhhccccCCcEEECCCCccccCChh---Hh--ccCceeec
Confidence            5555552 4433322                         24445 5666666666666533222   22  55666666


Q ss_pred             CCC
Q 041782          383 SYN  385 (821)
Q Consensus       383 s~n  385 (821)
                      +++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=3e-21  Score=206.81  Aligned_cols=204  Identities=16%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCC-cchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 041782          178 TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALD  256 (821)
Q Consensus       178 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  256 (821)
                      +++++|++++|.+.+..+. +.++++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++++++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4455555555554444333 33455555555555555433 445555555555555555555555555555555555555


Q ss_pred             ccCc-cCCCC-CCccccCCCCcCeeccccC-CceeecccccccCCCC-CCCeEECCCcc--cceeccccchhccCCCeeE
Q 041782          257 LSCN-QFQGP-VPSSISELKRLEYLDLHSN-NLSGNVYIEELLPKLK-SLIVLFLSANN--LSLITRNTVNIRLQNKFVF  330 (821)
Q Consensus       257 Ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~~~~~~l~~l~-~L~~L~L~~n~--l~~~~~~~~~~~~~~~L~~  330 (821)
                      +++| .+++. ++..+.++++|++|++++| .+++.... ..+..++ +|++|++++|.  ++.                
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~----------------  211 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQK----------------  211 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCH----------------
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCH----------------
Confidence            5555 34431 3334455555555555555 54432111 2244455 55555555552  211                


Q ss_pred             EecCCCCCchhhhhhcCCCccceEecccCC-CCCCCCcchhccCCCCeeEEEcCCCC-CCCCCCCccccccCCccEEEec
Q 041782          331 LGLASCNLKEFLDFLNDQDQLELLDLSANK-IPGKIPGWLLNVTTGNLQFVNLSYNL-ITGFDRGSVVLLWTDLVTLDLR  408 (821)
Q Consensus       331 L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~  408 (821)
                              ..++..+..+++|++|++++|. +++..+..+..+  ++|++|++++|. ++.... ..+..+++|++|+++
T Consensus       212 --------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          212 --------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF  280 (336)
T ss_dssp             --------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred             --------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC--CCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence                    1233334445555555555555 444444444444  555555555553 111111 123445666666666


Q ss_pred             cC
Q 041782          409 SN  410 (821)
Q Consensus       409 ~n  410 (821)
                      +|
T Consensus       281 ~~  282 (336)
T 2ast_B          281 GI  282 (336)
T ss_dssp             TS
T ss_pred             Cc
Confidence            66

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.9e-19  Score=189.59  Aligned_cols=195  Identities=24%  Similarity=0.298  Sum_probs=110.1

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      ....+++|++|++++|.+..                +|.+..+++|++|++++|.+++..+     +..+++|++|++++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~----------------l~~~~~l~~L~~L~L~~n~i~~~~~-----~~~l~~L~~L~L~~   94 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT----------------IEGVQYLNNLIGLELKDNQITDLAP-----LKNLTKITELELSG   94 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC----------------CTTGGGCTTCCEEECCSSCCCCCGG-----GTTCCSCCEEECCS
T ss_pred             cHHHcCCcCEEEeeCCCccC----------------chhhhccCCCCEEEccCCcCCCChh-----HccCCCCCEEEccC
Confidence            34567777777777776542                2335666777777777776665432     55666666666666


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |.+.+ + ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +
T Consensus        95 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~  167 (308)
T 1h6u_A           95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-T  167 (308)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G
T ss_pred             CcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-h
Confidence            66543 2 2456666666666666666542 2 25566666666666666654322  55566666666666665532 2


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcC
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLND  347 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~  347 (821)
                      . +..+++|++|++++|.+++..+    +..+++|++|++++|.+++                          ++ .+..
T Consensus       168 ~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~--------------------------~~-~l~~  215 (308)
T 1h6u_A          168 P-LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISD--------------------------VS-PLAN  215 (308)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCB--------------------------CG-GGTT
T ss_pred             h-hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCc--------------------------cc-cccC
Confidence            2 5555556666666555543211    3444455555554444443                          22 1455


Q ss_pred             CCccceEecccCCCC
Q 041782          348 QDQLELLDLSANKIP  362 (821)
Q Consensus       348 l~~L~~L~Ls~n~l~  362 (821)
                      +++|+.|++++|+++
T Consensus       216 l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          216 TSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CTTCCEEEEEEEEEE
T ss_pred             CCCCCEEEccCCeee
Confidence            666666676666664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.7e-19  Score=193.92  Aligned_cols=241  Identities=18%  Similarity=0.147  Sum_probs=169.6

Q ss_pred             EEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccE-Eec
Q 041782          404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKM-IDL  482 (821)
Q Consensus       404 ~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~-L~L  482 (821)
                      +++.++++++..+...+.++++|++++|+++...+..|.++++|++|+|++|++.+.+|..     +|.+++++++ +.+
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEEEE
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----Hhhcchhhhhhhcc
Confidence            3444444444322222344555555555555444457889999999999999988776643     3566777765 666


Q ss_pred             cCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCC-cCcccCCCCCccCCCCCCcEEEccCCcC
Q 041782          483 SHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFN-RFHGEIGEPDTGFVFPKLRIIDLSHNRF  561 (821)
Q Consensus       483 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  561 (821)
                      ++|+++...|..|..+++|++|++++|+++...+..+....++..|++.++ .+. .++..........++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence            778998777889999999999999999999887777777788889999764 454 444332222335688999999999


Q ss_pred             ccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEE
Q 041782          562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII  641 (821)
Q Consensus       562 ~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  641 (821)
                      + .+|...|.                                                              ...|+.|+
T Consensus       167 ~-~i~~~~f~--------------------------------------------------------------~~~L~~l~  183 (350)
T 4ay9_X          167 Q-EIHNSAFN--------------------------------------------------------------GTQLDELN  183 (350)
T ss_dssp             C-EECTTSST--------------------------------------------------------------TEEEEEEE
T ss_pred             c-CCChhhcc--------------------------------------------------------------ccchhHHh
Confidence            7 56654321                                                              11277889


Q ss_pred             ccc-ccccCccc-cccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCc
Q 041782          642 LSN-NKLIGKIP-TSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNN  718 (821)
Q Consensus       642 Ls~-N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  718 (821)
                      +++ |.++ .+| +.|.++++|++|||++|+|+...+..   +.+|+.|.+.++.-...+| .+.++++|+.++++++.
T Consensus       184 l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          184 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             hccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence            976 5555 555 56899999999999999999544433   5566666666665555777 48899999999998754

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.6e-19  Score=203.99  Aligned_cols=182  Identities=25%  Similarity=0.394  Sum_probs=124.3

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCC
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPEL  525 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  525 (821)
                      +|+.|++++|++++ +|..+        +++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SL  122 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred             CccEEEeCCCCCCc-cCHhH--------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CC
Confidence            67778888877776 55433        256778888888777 555   446778888888887777 344 444  78


Q ss_pred             CEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCcccc
Q 041782          526 KVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAY  605 (821)
Q Consensus       526 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~  605 (821)
                      ++|++++|++++ +|.     .+++|+.|++++|.+++ +|..                                     
T Consensus       123 ~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------  158 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE-----LPALLEYINADNNQLTM-LPEL-------------------------------------  158 (571)
T ss_dssp             CEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------
T ss_pred             CEEECCCCcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------
Confidence            888888887775 444     36778888888887763 5420                                     


Q ss_pred             ccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCC
Q 041782          606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVL  685 (821)
Q Consensus       606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L  685 (821)
                                                  ++.|+.|+|++|++++ +|. |.  ++|++|+|++|+|+ .+|. |..  +|
T Consensus       159 ----------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L  202 (571)
T 3cvr_A          159 ----------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN  202 (571)
T ss_dssp             ----------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred             ----------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh
Confidence                                        2236777777777775 665 55  77777777777777 5555 544  56


Q ss_pred             -------CeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCC
Q 041782          686 -------ESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQ  725 (821)
Q Consensus       686 -------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  725 (821)
                             +.|+|++|+|+ .+|..+..+++|++|++++|++++.+|.
T Consensus       203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence                   77777777777 4677677777777777777777776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.7e-19  Score=176.15  Aligned_cols=186  Identities=25%  Similarity=0.263  Sum_probs=149.7

Q ss_pred             CCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCC
Q 041782           73 DCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTK  152 (821)
Q Consensus        73 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~  152 (821)
                      -.|.|.+|.|....            +. .++.    ...++|++|++++|.+..  +|...            +..+++
T Consensus         5 C~C~~~~v~c~~~~------------l~-~~p~----~~~~~l~~L~l~~n~l~~--~~~~~------------~~~l~~   53 (208)
T 2o6s_A            5 CSCSGTTVECYSQG------------RT-SVPT----GIPAQTTYLDLETNSLKS--LPNGV------------FDELTS   53 (208)
T ss_dssp             CEEETTEEECCSSC------------CS-SCCS----CCCTTCSEEECCSSCCCC--CCTTT------------TTTCTT
T ss_pred             CEECCCEEEecCCC------------cc-CCCC----CCCCCCcEEEcCCCccCc--CChhh------------hccccc
Confidence            34899999997531            11 1222    224689999999999863  44432            688999


Q ss_pred             CCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEE
Q 041782          153 LKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILS  232 (821)
Q Consensus       153 L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  232 (821)
                      |++|++++|++++..+   ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|+
T Consensus        54 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           54 LTQLYLGGNKLQSLPN---GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             CSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcEEECCCCccCccCh---hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence            9999999999998776   5668899999999999999876667789999999999999999977777789999999999


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCC
Q 041782          233 LKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKS  301 (821)
Q Consensus       233 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~  301 (821)
                      +++|.+++..+..+..+++|++|++++|.+.+       .+++|++|+++.|+++|.+|.  .++.++.
T Consensus       131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~--~~~~l~~  190 (208)
T 2o6s_A          131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN--SAGSVAP  190 (208)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC--TTSSBCT
T ss_pred             CCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec--cCccccC
Confidence            99999997777778999999999999997764       456899999999999987775  3555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=9.9e-19  Score=173.02  Aligned_cols=130  Identities=25%  Similarity=0.197  Sum_probs=74.3

Q ss_pred             eeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEe
Q 041782          426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD  505 (821)
Q Consensus       426 l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  505 (821)
                      +++++|.+++..+..+..+++|++|++++|++++..+..      |..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            333333333333444556666666666666666443322      33456666666666666655445566666666666


Q ss_pred             CCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCcc
Q 041782          506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG  563 (821)
Q Consensus       506 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g  563 (821)
                      +++|++++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|++.+
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence            66666666655556666666666666666664333223  345666666666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=2.6e-19  Score=202.19  Aligned_cols=203  Identities=25%  Similarity=0.354  Sum_probs=153.9

Q ss_pred             ccCCCCCCCCCCCCc-----cccce-eeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccc
Q 041782           61 KFASWNLEEEDRDCC-----SWDGV-KCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEI  134 (821)
Q Consensus        61 ~l~~W~~~~~~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~  134 (821)
                      .+.+|..   +.++|     .|.|+ .|..  ++++.|+|+++.+.+ +|.  .+  +++|++|+|++|.++  .+| . 
T Consensus        32 ~l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~--~ip-~-   97 (571)
T 3cvr_A           32 AWDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI--SLP-E-   97 (571)
T ss_dssp             HHHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS--CCC-C-
T ss_pred             HHHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc--ccc-c-
Confidence            4567865   45677     79999 7863  579999999999987 654  44  489999999999986  355 2 


Q ss_pred             cccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcC
Q 041782          135 MNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQL  214 (821)
Q Consensus       135 ~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l  214 (821)
                                    .+++|++|+|++|.+++ +|   . +..  +|++|++++|.+.+ +|.   .+++|++|++++|.+
T Consensus        98 --------------~l~~L~~L~Ls~N~l~~-ip---~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           98 --------------LPASLEYLDACDNRLST-LP---E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL  152 (571)
T ss_dssp             --------------CCTTCCEEECCSSCCSC-CC---C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             --------------ccCCCCEEEccCCCCCC-cc---h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc
Confidence                          36899999999999998 55   2 333  89999999999876 666   688999999999999


Q ss_pred             CCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCc-------CeeccccCCce
Q 041782          215 TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL-------EYLDLHSNNLS  287 (821)
Q Consensus       215 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~  287 (821)
                      ++ +|.   .+++|++|++++|.+++ +|. |.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++
T Consensus       153 ~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          153 TM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred             Cc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence            85 565   57889999999999986 666 65  88999999999988 6666 554  66       88888888777


Q ss_pred             eecccccccCCCCCCCeEECCCcccceecc
Q 041782          288 GNVYIEELLPKLKSLIVLFLSANNLSLITR  317 (821)
Q Consensus       288 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  317 (821)
                      . +|.  .+..+++|+.|++++|.+++..+
T Consensus       221 ~-lp~--~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          221 H-IPE--NILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             C-CCG--GGGGSCTTEEEECCSSSCCHHHH
T ss_pred             e-cCH--HHhcCCCCCEEEeeCCcCCCcCH
Confidence            3 343  24457777777777777765433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=5.6e-18  Score=182.04  Aligned_cols=102  Identities=19%  Similarity=0.113  Sum_probs=68.0

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccC-ccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCC
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH-NLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPE  524 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  524 (821)
                      .++.|++++|+++...+..+       ...+|++|++++ |.++...+..|..+++|++|++++|+|+.+.+..   +.+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f-------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~  224 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAF-------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LEN  224 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSS-------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTT
T ss_pred             hhhhhccccccccCCChhhc-------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hcc
Confidence            46777888887775433322       245788888875 5555433456788888999999999888775543   455


Q ss_pred             CCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782          525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR  560 (821)
Q Consensus       525 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  560 (821)
                      |+.|.+.++.-...+|..   ..+++|+.++++++.
T Consensus       225 L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          225 LKKLRARSTYNLKKLPTL---EKLVALMEASLTYPS  257 (350)
T ss_dssp             CCEEECTTCTTCCCCCCT---TTCCSCCEEECSCHH
T ss_pred             chHhhhccCCCcCcCCCc---hhCcChhhCcCCCCc
Confidence            666666555544456642   568899999987653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=6.1e-18  Score=169.75  Aligned_cols=158  Identities=25%  Similarity=0.288  Sum_probs=75.7

Q ss_pred             CCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCC
Q 041782           71 DRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNL  150 (821)
Q Consensus        71 ~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l  150 (821)
                      +...|+|.+|.|....  +           +.+|.  .+  .++|++|+|++|.+.+. .|..             +..+
T Consensus        15 ~~~~Cs~~~v~c~~~~--l-----------~~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~-------------~~~l   63 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKR--H-----------ASVPA--GI--PTNAQILYLHDNQITKL-EPGV-------------FDSL   63 (229)
T ss_dssp             TTCEEETTEEECTTSC--C-----------SSCCS--CC--CTTCSEEECCSSCCCCC-CTTT-------------TTTC
T ss_pred             CCCEEeCCEeEccCCC--c-----------CccCC--CC--CCCCCEEEcCCCccCcc-CHHH-------------hhCc
Confidence            5788999999996431  1           12222  11  15566666666665421 1222             4555


Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI  230 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  230 (821)
                      ++|++|+|++|.++...+   ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++
T Consensus        64 ~~L~~L~L~~N~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  139 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPV---GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH  139 (229)
T ss_dssp             TTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE
T ss_pred             cCCcEEECCCCCCCCcCh---hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE
Confidence            566666666666554443   33344444444444444444333333444444444444444444 33444444444444


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      |++++|++++..+..|..+++|++|++++|.+.
T Consensus       140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            444444444333333444444444444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.8e-18  Score=175.59  Aligned_cols=176  Identities=24%  Similarity=0.332  Sum_probs=142.8

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALAN  187 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~  187 (821)
                      .+..+++|++|++++|.+..  +|.              +..+++|++|++++|.+++..+     +..+++|++|++++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~--~~~--------------~~~l~~L~~L~L~~n~l~~~~~-----l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKS--VQG--------------IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDE   99 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CTT--------------GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCS
T ss_pred             chhhcCcccEEEccCCCccc--Chh--------------HhcCCCCCEEEccCCccCCCcc-----cccCCCCCEEECCC
Confidence            45678889999999988753  332              6778899999999999887543     78889999999999


Q ss_pred             ccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          188 INLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       188 n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      |.+.+ +| .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+
T Consensus       100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            98865 33 488899999999999998853  4688899999999999998865  578889999999999999886544


Q ss_pred             ccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceec
Q 041782          268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT  316 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  316 (821)
                        +..+++|++|++++|.+++. +   .+..+++|+.|++++|.++..+
T Consensus       174 --l~~l~~L~~L~L~~N~i~~l-~---~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEEEEEEEEECCC
T ss_pred             --hcCCCccCEEECCCCcCCCC-h---hhccCCCCCEEECcCCcccCCc
Confidence              88899999999999988752 2   2788899999999998877543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.3e-17  Score=166.12  Aligned_cols=138  Identities=21%  Similarity=0.237  Sum_probs=103.8

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      .+++|+|++|.+++..+.  ..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus        33 ~~~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEAT--GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TCSEEECCSSCCCEECCC--CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCEEEcCCCcCCccCch--hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            456777777777766431  235667777777777777766666677788888888888888887777778888888888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecc
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVY  291 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  291 (821)
                      ++++|++++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+....+
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            888888887777788888888888888888887777788888888888888887775444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.5e-17  Score=165.77  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=86.9

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI  230 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  230 (821)
                      ++|++|++++|.+++..+   ..+..+++|++|++++|.+.+..|..|.++++|++|+|++|.++...+..|..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~---~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEECT---TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcCH---hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            355566666666555544   34455556666666666665555666666777777777777776554455666777777


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782          231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  287 (821)
                      |+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            777777777666666777777777777777777665556666677777777776665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=7.8e-18  Score=181.62  Aligned_cols=176  Identities=27%  Similarity=0.220  Sum_probs=109.8

Q ss_pred             cEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhc-CCCCCCEEeCCCCcCCcCCchhhCCCCCCC
Q 041782          448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-NCTMLEFLDLGNNQIADIFPSWLGTLPELK  526 (821)
Q Consensus       448 ~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  526 (821)
                      +.+++++++++. +|..+        .+.++.|+|++|.+++..+..+. .+++|++|+|++|+|+++.+..|..+++|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~--------~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--------PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--------CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCCcCc-cCccC--------CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            577888877764 45443        24577788888887766666666 777788888888877777777777777777


Q ss_pred             EEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccc
Q 041782          527 VLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI  606 (821)
Q Consensus       527 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  606 (821)
                      +|+|++|++.+..+..+  ..+++|++|+|++|++++..|. .|..                                  
T Consensus        92 ~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~-~~~~----------------------------------  134 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNHIVVVDRN-AFED----------------------------------  134 (361)
T ss_dssp             EEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCEECTT-TTTT----------------------------------
T ss_pred             EEECCCCcCCcCCHHHh--CCCcCCCEEECCCCcccEECHH-HhCC----------------------------------
Confidence            77777777765544444  4566777777777776532221 1111                                  


Q ss_pred             cccccceeeeeeEEEEecceeeecccccccccEEEcccccccCcccccc---ccCCCCCEEeCCCcccCcchhhhhcCcc
Q 041782          607 FDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI---SELKGLNCLNLSGNNLLGHIPSSLGNLT  683 (821)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l---~~L~~L~~L~Ls~N~l~~~ip~~l~~l~  683 (821)
                                                 ++.|+.|+|++|++++..+..|   ..+++|++|+|++|++++..+..|..++
T Consensus       135 ---------------------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          135 ---------------------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             ---------------------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence                                       2235666666666664333333   4466666666666666655555566555


Q ss_pred             C--CCeEeCCCCccc
Q 041782          684 V--LESLDLSNNNLS  696 (821)
Q Consensus       684 ~--L~~L~Ls~N~l~  696 (821)
                      .  |+.|+|++|.+.
T Consensus       188 ~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          188 AWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHTTEECCSSCEE
T ss_pred             HhhcceEEecCCCcc
Confidence            5  356666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.73  E-value=5.7e-19  Score=207.21  Aligned_cols=240  Identities=18%  Similarity=0.140  Sum_probs=123.6

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCccccceeeCCCCCCEEEEEcCCCCCcccccCCccc
Q 041782           30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSL  109 (821)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l  109 (821)
                      +....++++|+++..+......        ..-..|...  .+..+.|.++.+..  ++++.|+|.++.+... +.  . 
T Consensus       128 s~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~--~-  191 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDSKT--------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEA-NQ--A-  191 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHHHT--------TC------------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccccC--------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcc-hh--h-
Confidence            3556688999999987632211        133456442  45678899998864  6899999998887653 21  2 


Q ss_pred             ccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCC-CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          110 FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPS-LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       110 ~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~-l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                          .|+.++|+.|.+....+...     .+ ...|. +..+++|++|+|++|.+.. +|   ..+..+++|++|+|++|
T Consensus       192 ----~l~~l~Ls~~~i~~~~~~~n-----~~-~~~~~~~~~l~~L~~L~Ls~n~l~~-l~---~~~~~l~~L~~L~Ls~N  257 (727)
T 4b8c_D          192 ----LLQHKKLSQYSIDEDDDIEN-----RM-VMPKDSKYDDQLWHALDLSNLQIFN-IS---ANIFKYDFLTRLYLNGN  257 (727)
T ss_dssp             ----------------------------------------CCCCCCEEECTTSCCSC-CC---GGGGGCCSCSCCBCTTS
T ss_pred             ----HhhcCccCcccccCcccccc-----ce-ecChhhhccCCCCcEEECCCCCCCC-CC---hhhcCCCCCCEEEeeCC
Confidence                34555555555432111000     00 00111 7788899999999999884 44   44557888999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS  268 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  268 (821)
                      .+. .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|.
T Consensus       258 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          258 SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence            887 78888888999999999999888 77888888889999999998887 6787888888999999999988888777


Q ss_pred             cccCCCC-cCeeccccCCceeecccccccCCCCCCCeEECCCc
Q 041782          269 SISELKR-LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN  310 (821)
Q Consensus       269 ~l~~l~~-L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  310 (821)
                      .+..+.. +..+++++|.+++.+|.        .|+.|+++.|
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p~--------~l~~l~l~~n  369 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLPH--------ERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCCC--------C---------
T ss_pred             HHhhcchhhhHHhhccCcccCcCcc--------ccceeEeecc
Confidence            7755432 23477888888764432        3455555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.4e-17  Score=162.97  Aligned_cols=154  Identities=16%  Similarity=0.252  Sum_probs=113.9

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                      ...+++|++|++++|.+.  .+| .             +..+++|++|++++|.++..     ..+..+++|++|++++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~--~l~-~-------------l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT--DLT-G-------------IEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS--CCT-T-------------GGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECT
T ss_pred             hhhcCCccEEeccCCCcc--ChH-H-------------HhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECC
Confidence            466778888888888875  344 2             67788888888888866543     45677888888888888


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCCCccccCCCCCCCEEEccCccCCCCCC
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGYLPSQIGSLTQLTALDLSCNQFQGPVP  267 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  267 (821)
                      .+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++
T Consensus        99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~  175 (197)
T 4ezg_A           99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR  175 (197)
T ss_dssp             TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT
T ss_pred             ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH
Confidence            8877777778888888888888888877777778888888888888887 55 444 57777888888888887774 33


Q ss_pred             ccccCCCCcCeeccccCCce
Q 041782          268 SSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       268 ~~l~~l~~L~~L~L~~n~l~  287 (821)
                       .+..+++|++|++++|++.
T Consensus       176 -~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -TGGGCSSCCEEEECBC---
T ss_pred             -HhccCCCCCEEEeeCcccC
Confidence             5677777777777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.6e-17  Score=170.52  Aligned_cols=173  Identities=27%  Similarity=0.344  Sum_probs=109.7

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +..+++|++|++++|.+...     ..+..+++|++|++++|.+.+..+  +.++++|++|++++|.+++ ++ .+..++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~  112 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLK  112 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred             hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCC
Confidence            34567777777777777654     235666777777777777655433  6677777777777777664 22 366677


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEE
Q 041782          227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLF  306 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  306 (821)
                      +|++|++++|++++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+    +..+++|++|+
T Consensus       113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~  184 (291)
T 1h6t_A          113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLY  184 (291)
T ss_dssp             TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEE
Confidence            777777777776643  3566667777777777766643  456666666666666666654221    45556666666


Q ss_pred             CCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCCCCC
Q 041782          307 LSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPG  363 (821)
Q Consensus       307 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~  363 (821)
                      +++|.++.                          ++. +..+++|+.|++++|++..
T Consensus       185 L~~N~i~~--------------------------l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          185 LSKNHISD--------------------------LRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCB--------------------------CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCcCCC--------------------------Chh-hccCCCCCEEECcCCcccC
Confidence            66555543                          322 5667777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=2.7e-17  Score=188.07  Aligned_cols=190  Identities=24%  Similarity=0.324  Sum_probs=156.5

Q ss_pred             EEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCC
Q 041782           91 KLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSAS  170 (821)
Q Consensus        91 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~  170 (821)
                      .+++....+.+..    .+..+++|+.|++++|.+..  +|.              +..+++|++|+|++|.+++..+  
T Consensus        25 ~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~~--------------l~~l~~L~~L~Ls~N~l~~~~~--   82 (605)
T 1m9s_A           25 KDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQG--------------IQYLPNVTKLFLNGNKLTDIKP--   82 (605)
T ss_dssp             HHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CTT--------------GGGCTTCCEEECTTSCCCCCGG--
T ss_pred             HHhccCCCccccc----chhcCCCCCEEECcCCCCCC--ChH--------------HccCCCCCEEEeeCCCCCCChh--
Confidence            3344444444433    46788999999999998853  332              7889999999999999988644  


Q ss_pred             chhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCC
Q 041782          171 FSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT  250 (821)
Q Consensus       171 ~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  250 (821)
                         +..+++|++|+|++|.+.+ +| .+..+++|++|+|++|.+++.  ..+..+++|+.|+|++|.+++.  ..+..++
T Consensus        83 ---l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           83 ---LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLT  153 (605)
T ss_dssp             ---GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred             ---hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccC
Confidence               7889999999999999865 33 689999999999999999853  4688999999999999999965  6789999


Q ss_pred             CCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceecc
Q 041782          251 QLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITR  317 (821)
Q Consensus       251 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  317 (821)
                      +|++|+|++|.+.+..|  +..+++|++|+|++|.+++. +   .+..+++|+.|+|++|.+...+.
T Consensus       154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~---~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h---HHccCCCCCEEEccCCcCcCCcc
Confidence            99999999999997655  88999999999999999863 2   38889999999999999876543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=6.7e-17  Score=160.98  Aligned_cols=141  Identities=21%  Similarity=0.179  Sum_probs=118.4

Q ss_pred             cceeeccCCccCCCCc-hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCC
Q 041782          423 TIHYLVSNNLLTGKLA-PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML  501 (821)
Q Consensus       423 l~~l~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  501 (821)
                      ++.+++++|.+++..+ ..+..+++|++|++++|++++..+..      |.++++|++|++++|.+++..+..|..+++|
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA------FEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH------hCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            3344444444444433 45788999999999999999876654      4568999999999999998888889999999


Q ss_pred             CEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhh
Q 041782          502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQ  571 (821)
Q Consensus       502 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  571 (821)
                      ++|+|++|++++..|..+..+++|++|+|++|++++..|..+  ..+++|+.|++++|++.+..+..++.
T Consensus       108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence            999999999999999999999999999999999998777776  67999999999999999887765544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.4e-17  Score=177.83  Aligned_cols=135  Identities=26%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             CCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782          149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL  228 (821)
Q Consensus       149 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  228 (821)
                      .+++|++|+|++|+|++..+   ..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCcCCccCh---hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            55555555555555555544   334445555555555555544444445555555555555555554444455555555


Q ss_pred             CEEEccCCcCCCCCcccc---CCCCCCCEEEccCccCCCCCCccccCCCC--cCeeccccCCc
Q 041782          229 TILSLKSNQLRGYLPSQI---GSLTQLTALDLSCNQFQGPVPSSISELKR--LEYLDLHSNNL  286 (821)
Q Consensus       229 ~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l  286 (821)
                      ++|+|++|++++..+..|   ..+++|++|+|++|.+++..+..+..++.  ++.|++++|.+
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            555555555553222222   33445555555555544333333333333  23444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=5.5e-17  Score=162.77  Aligned_cols=87  Identities=25%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      |+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus        90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            556666666666555556777888888888888888 6777788888888888888888877777788888888888888


Q ss_pred             CcccccCC
Q 041782          717 NNLTGQIP  724 (821)
Q Consensus       717 N~l~g~iP  724 (821)
                      |++.+.++
T Consensus       169 N~~~c~c~  176 (229)
T 3e6j_A          169 NPWDCECR  176 (229)
T ss_dssp             SCBCTTBG
T ss_pred             CCccCCcc
Confidence            88887765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.8e-16  Score=157.91  Aligned_cols=142  Identities=19%  Similarity=0.188  Sum_probs=117.6

Q ss_pred             cccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCC
Q 041782          421 ESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTM  500 (821)
Q Consensus       421 ~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  500 (821)
                      ..++.+++++|.+++..+..+..+++|++|+|++|++++..|..+      .++++|++|+|++|.++...+..|..+++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF------QGLRSLNSLVLYGNKITELPKSLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT------TTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh------hCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence            344455555555555555678889999999999999998877654      55899999999999999766677899999


Q ss_pred             CCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhh
Q 041782          501 LEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYF  570 (821)
Q Consensus       501 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  570 (821)
                      |++|+|++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|+|++|++.+.....++
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHH
Confidence            9999999999999999999999999999999999997666555  6689999999999999876654444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=7.6e-17  Score=184.33  Aligned_cols=174  Identities=25%  Similarity=0.301  Sum_probs=100.4

Q ss_pred             hhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhC
Q 041782          441 LCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG  520 (821)
Q Consensus       441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~  520 (821)
                      +..+++|+.|++++|.+... |       .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++.+.  ..+.
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~  106 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-------GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLK  106 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-------TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTST
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-------HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhc
Confidence            34556666777776666532 2       13446666677777666664433  66666666666666666653  2466


Q ss_pred             CCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccC
Q 041782          521 TLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILP  600 (821)
Q Consensus       521 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~  600 (821)
                      .+++|+.|+|++|.+.+. + .  ...+++|+.|+|++|.+++. +.  +..                            
T Consensus       107 ~l~~L~~L~Ls~N~l~~l-~-~--l~~l~~L~~L~Ls~N~l~~l-~~--l~~----------------------------  151 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISDI-N-G--LVHLPQLESLYLGNNKITDI-TV--LSR----------------------------  151 (605)
T ss_dssp             TCTTCCEEECTTSCCCCC-G-G--GGGCTTCSEEECCSSCCCCC-GG--GGS----------------------------
T ss_pred             cCCCCCEEEecCCCCCCC-c-c--ccCCCccCEEECCCCccCCc-hh--hcc----------------------------
Confidence            666666666666666532 1 1  24456666666666666531 10  100                            


Q ss_pred             CccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhc
Q 041782          601 SSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLG  680 (821)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~  680 (821)
                                                       ++.|+.|+|++|.+++..|  +..+++|+.|+|++|++++. | .+.
T Consensus       152 ---------------------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~  194 (605)
T 1m9s_A          152 ---------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALA  194 (605)
T ss_dssp             ---------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGT
T ss_pred             ---------------------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHc
Confidence                                             2235666666666665544  66666666666666666643 2 356


Q ss_pred             CccCCCeEeCCCCccccc
Q 041782          681 NLTVLESLDLSNNNLSGE  698 (821)
Q Consensus       681 ~l~~L~~L~Ls~N~l~~~  698 (821)
                      .+++|+.|+|++|++++.
T Consensus       195 ~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCTTCSEEECCSEEEECC
T ss_pred             cCCCCCEEEccCCcCcCC
Confidence            666666666666666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=2.8e-17  Score=160.02  Aligned_cols=113  Identities=22%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             ccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEc
Q 041782          635 NFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV  714 (821)
Q Consensus       635 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  714 (821)
                      +.|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..|..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34788889999998888889999999999999999999888888999999999999999999999999999999999999


Q ss_pred             ccCcccccCCCCCCCCCCCCCccCCCCCCCCCC
Q 041782          715 SDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       715 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      ++|+++|.++.......+....+.++...|+.|
T Consensus       134 ~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999877643211111222344555556554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=9.9e-17  Score=156.94  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      .+.+++|++|++++|.++.. |    .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..++.++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l-~----~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDL-T----GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCC-T----TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             hhhcCCccEEeccCCCccCh-H----HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            35678899999999998843 2    3778889999999999653  335788899999999999999887888899999


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCEEEccCcc-CCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782          227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQ-FQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL  305 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  305 (821)
                      +|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++. +   .+..+++|++|
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~---~l~~l~~L~~L  186 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R---GIEDFPKLNQL  186 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T---TGGGCSSCCEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H---HhccCCCCCEE
Confidence            99999999999998788889999999999999998 55 455 688899999999999988752 2   37788889999


Q ss_pred             ECCCcccce
Q 041782          306 FLSANNLSL  314 (821)
Q Consensus       306 ~L~~n~l~~  314 (821)
                      ++++|++..
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            998888753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=9e-17  Score=164.76  Aligned_cols=170  Identities=24%  Similarity=0.277  Sum_probs=122.1

Q ss_pred             CCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcE
Q 041782          474 ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRI  553 (821)
Q Consensus       474 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  553 (821)
                      +.++..+++++|.+++. + .+..+++|++|++++|.++.. + .+..+++|++|++++|++.+..+  +  ..+++|++
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCE
Confidence            45566667777776633 2 466677777777777777654 3 56677777777777777765433  2  55777777


Q ss_pred             EEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccc
Q 041782          554 IDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV  633 (821)
Q Consensus       554 L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (821)
                      |++++|++++ +|...                                                                
T Consensus        90 L~L~~N~l~~-l~~~~----------------------------------------------------------------  104 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGIP----------------------------------------------------------------  104 (263)
T ss_dssp             EECCSSCCSC-CTTCC----------------------------------------------------------------
T ss_pred             EECCCCccCC-cCccc----------------------------------------------------------------
Confidence            7777777763 33100                                                                


Q ss_pred             cccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEE
Q 041782          634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD  713 (821)
Q Consensus       634 ~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  713 (821)
                      .+.|+.|++++|++++. + .+.++++|++|+|++|++++. | .++.+++|++|+|++|++++.  ..+..+++|+.|+
T Consensus       105 ~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~  178 (263)
T 1xeu_A          105 SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWID  178 (263)
T ss_dssp             CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEE
T ss_pred             cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEe
Confidence            02377888888888753 3 588888899999999998864 4 588889999999999999876  6688888999999


Q ss_pred             cccCccccc
Q 041782          714 VSDNNLTGQ  722 (821)
Q Consensus       714 ls~N~l~g~  722 (821)
                      +++|++++.
T Consensus       179 l~~N~~~~~  187 (263)
T 1xeu_A          179 LTGQKCVNE  187 (263)
T ss_dssp             EEEEEEECC
T ss_pred             CCCCcccCC
Confidence            999998865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=3.1e-18  Score=194.69  Aligned_cols=88  Identities=27%  Similarity=0.387  Sum_probs=74.6

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccC-CCCccccCCccEEEc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEI-PRQLAELTSLAVFDV  714 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l  714 (821)
                      .|+.|+|++|.++ .+|..|+++++|++|+|++|++++ +| .|+++++|++|+|++|++++.+ |..+..+++|++|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4788888888888 778888888999999999998886 66 7888899999999999998876 888888899999999


Q ss_pred             ccCcccccCCCC
Q 041782          715 SDNNLTGQIPQG  726 (821)
Q Consensus       715 s~N~l~g~iP~~  726 (821)
                      ++|++++.+|..
T Consensus       541 ~~N~l~~~~~~~  552 (567)
T 1dce_A          541 QGNSLCQEEGIQ  552 (567)
T ss_dssp             TTSGGGGSSSCT
T ss_pred             cCCcCCCCccHH
Confidence            999988876643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=7.4e-16  Score=157.95  Aligned_cols=149  Identities=25%  Similarity=0.373  Sum_probs=69.9

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                      +..+++|++|++++|.+..  +| .             +..+++|++|+|++|.+++..+     +..+++|++|++++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~--l~-~-------------l~~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS--LA-G-------------MQFFTNLKELHLSHNQISDLSP-----LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC--CT-T-------------GGGCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECCSS
T ss_pred             hhhcCcCcEEECcCCCccc--ch-H-------------HhhCCCCCEEECCCCccCCChh-----hccCCCCCEEECCCC
Confidence            4555555555555555532  22 1             4455555555555555554322     444555555555555


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS  268 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  268 (821)
                      .+.+ +|. +.. ++|++|++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++.  .
T Consensus        96 ~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           96 RLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             CCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             ccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence            5433 222 111 4455555555554432  1344445555555555554432 2 344444455555555444433  3


Q ss_pred             cccCCCCcCeeccccCCce
Q 041782          269 SISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       269 ~l~~l~~L~~L~L~~n~l~  287 (821)
                      .+..+++|++|++++|.+.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEE
T ss_pred             HhccCCCCCEEeCCCCccc
Confidence            3444444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=5.7e-18  Score=192.48  Aligned_cols=199  Identities=21%  Similarity=0.186  Sum_probs=151.1

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCC-------------CCCCCCCCchhcc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNN-------------FSSPHSASFSWIA  175 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~-------------~~~~~~~~~~~l~  175 (821)
                      +..+++|+.|+|++|.+.  .+|+.             ++++++|+.|++++|.             +.+..|   ..++
T Consensus       345 ~~~~~~L~~L~Ls~n~L~--~Lp~~-------------i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~---~~l~  406 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST--VLQSE-------------LESCKELQELEPENKWCLLTIILLMRALDPLLYEK---ETLQ  406 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH--HHHHH-------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH---HHHH
T ss_pred             cccCccceeccCChhhHH--hhHHH-------------HHHHHHHHHhccccchhhhhHHHHHHhcccccCCH---HHHH
Confidence            367899999999999985  58887             6777888888887664             555666   5667


Q ss_pred             CCCCCCEEe-cCCccccccCCc------cccC--CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCcccc
Q 041782          176 KQTELSWLA-LANINLIGEFPS------WLMN--LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQI  246 (821)
Q Consensus       176 ~l~~L~~L~-L~~n~~~~~~p~------~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l  246 (821)
                      .+++|+.|+ ++.|.+. .++.      .+..  ...|++|+|++|.+++ +|. |+.+++|++|+|++|.++ .+|..+
T Consensus       407 ~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~  482 (567)
T 1dce_A          407 YFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL  482 (567)
T ss_dssp             HHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred             HHHhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh
Confidence            777777777 4544321 1110      0111  1258899999999985 666 889999999999999998 778899


Q ss_pred             CCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeec-ccccccCCCCCCCeEECCCcccceeccccch-hcc
Q 041782          247 GSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNV-YIEELLPKLKSLIVLFLSANNLSLITRNTVN-IRL  324 (821)
Q Consensus       247 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~  324 (821)
                      +++++|++|+|++|.+++ +| .++++++|++|++++|++++.. |  ..+..+++|+.|++++|.+++.++.... ...
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p--~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI--QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT--GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc--HHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence            999999999999999986 66 7889999999999999998653 3  4588899999999999999887764432 234


Q ss_pred             CCCeeEEec
Q 041782          325 QNKFVFLGL  333 (821)
Q Consensus       325 ~~~L~~L~L  333 (821)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            788888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=1.7e-16  Score=186.32  Aligned_cols=182  Identities=18%  Similarity=0.126  Sum_probs=117.1

Q ss_pred             CCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCC
Q 041782          436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIF  515 (821)
Q Consensus       436 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  515 (821)
                      ..+..+..++.|+.|+|++|.+. .+|..+.      .+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG------GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc------CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence            45677888999999999999998 5565432      4799999999999999 88999999999999999999999 55


Q ss_pred             chhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCc
Q 041782          516 PSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL  595 (821)
Q Consensus       516 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l  595 (821)
                      |..++.+++|++|+|++|.+. .+|..+  ..+++|++|+|++|++++.+|..+ ......                   
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~~-------------------  342 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL-TEKSVT-------------------  342 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH-HHHHHH-------------------
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH-hhcchh-------------------
Confidence            889999999999999999997 677765  779999999999999998877553 221100                   


Q ss_pred             ccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCc------
Q 041782          596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGN------  669 (821)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N------  669 (821)
                                                               ...++|++|.+++.+|..+      +.|++++|      
T Consensus       343 -----------------------------------------~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~  375 (727)
T 4b8c_D          343 -----------------------------------------GLIFYLRDNRPEIPLPHER------RFIEINTDGEPQRE  375 (727)
T ss_dssp             -----------------------------------------HHHHHHHHCCCCCCCCCC---------------------
T ss_pred             -----------------------------------------hhHHhhccCcccCcCcccc------ceeEeecccccccc
Confidence                                                     1236788888888877643      45566666      


Q ss_pred             --ccCcchhhhhcCccCCCeEeCCCCccc
Q 041782          670 --NLLGHIPSSLGNLTVLESLDLSNNNLS  696 (821)
Q Consensus       670 --~l~~~ip~~l~~l~~L~~L~Ls~N~l~  696 (821)
                        .+.+.++..+.++..++...+++|-+.
T Consensus       376 ~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          376 YDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------------------CCC
T ss_pred             cCCccccccchhhcccccceeeeeccccc
Confidence              444444555566666777777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.1e-15  Score=145.40  Aligned_cols=111  Identities=23%  Similarity=0.305  Sum_probs=59.7

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +|++|++++|.+++..+.  ..+..+++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCCcCCccCCc--cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            566666666666655441  113445555555555555554445555555555555555555555444445555555555


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCC
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG  264 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  264 (821)
                      ++++|++++..|..|..+++|++|++++|.+.+
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            555555555555555555555555555555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=2.8e-15  Score=142.46  Aligned_cols=133  Identities=25%  Similarity=0.268  Sum_probs=88.9

Q ss_pred             CCCCCEEEcCCCCCC-CCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC
Q 041782          150 LTKLKCLELSQNNFS-SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL  228 (821)
Q Consensus       150 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  228 (821)
                      .++|++|++++|.++ +.+|   ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCS---SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhHH---HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            356666666666665 4445   3345566666666666666544  556777777777777777776667777777777


Q ss_pred             CEEEccCCcCCCCC-ccccCCCCCCCEEEccCccCCCCCC---ccccCCCCcCeeccccCCce
Q 041782          229 TILSLKSNQLRGYL-PSQIGSLTQLTALDLSCNQFQGPVP---SSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       229 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~  287 (821)
                      ++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            77777777777532 2567777777777777777775443   35667777777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.2e-15  Score=143.23  Aligned_cols=139  Identities=25%  Similarity=0.194  Sum_probs=108.5

Q ss_pred             cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccc
Q 041782          111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL  190 (821)
Q Consensus       111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~  190 (821)
                      ..++|++|++++|.+..+.+|..             +..+++|++|++++|.+++.     ..+..+++|++|++++|.+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~-------------~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGL-------------TAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRI   83 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSC-------------CGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCC
T ss_pred             CcccCCEEECCCCCCChhhHHHH-------------HHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcC
Confidence            34678888888888763345554             57778888888888888765     3467788888888888888


Q ss_pred             cccCCccccCCCCCCEEEccCCcCCCCc-chhhhcCCCCCEEEccCCcCCCCCc---cccCCCCCCCEEEccCccCCCCC
Q 041782          191 IGEFPSWLMNLTQLTYINFDLNQLTGPI-PNWLANLNRLTILSLKSNQLRGYLP---SQIGSLTQLTALDLSCNQFQGPV  266 (821)
Q Consensus       191 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~  266 (821)
                      .+.+|..+.++++|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+
T Consensus        84 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~  162 (168)
T 2ell_A           84 FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EA  162 (168)
T ss_dssp             CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BC
T ss_pred             chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hc
Confidence            7777877778899999999999888542 2678889999999999999886554   47888999999999998877 44


Q ss_pred             Cc
Q 041782          267 PS  268 (821)
Q Consensus       267 p~  268 (821)
                      |+
T Consensus       163 ~~  164 (168)
T 2ell_A          163 PD  164 (168)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=2.1e-15  Score=140.24  Aligned_cols=127  Identities=22%  Similarity=0.269  Sum_probs=67.1

Q ss_pred             CCCCEEEcCCCCCC-CCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCC
Q 041782          151 TKLKCLELSQNNFS-SPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLT  229 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  229 (821)
                      ++|++|++++|.++ +.+|   ..+..+++|++|++++|.+.+.  ..+.++++|++|++++|.+++.+|..+..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC---SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHH---HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            34444444444444 3333   2333444444444444444333  3455566666666666666655555555566666


Q ss_pred             EEEccCCcCCCC-CccccCCCCCCCEEEccCccCCCCCC---ccccCCCCcCeeccc
Q 041782          230 ILSLKSNQLRGY-LPSQIGSLTQLTALDLSCNQFQGPVP---SSISELKRLEYLDLH  282 (821)
Q Consensus       230 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~  282 (821)
                      +|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666666542 23555666666666666666654433   345555666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.2e-15  Score=139.00  Aligned_cols=131  Identities=21%  Similarity=0.169  Sum_probs=104.5

Q ss_pred             cCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccc
Q 041782          111 HLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINL  190 (821)
Q Consensus       111 ~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~  190 (821)
                      ..++|++|++++|.+..+.+|..             +..+++|++|++++|.+++.     ..+..+++|++|++++|.+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-------------TDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-------------CTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCC
T ss_pred             CCccCeEEEccCCcCChhHHHHH-------------HhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcc
Confidence            34678888888888763345554             67788888888888888765     3567788888888888888


Q ss_pred             cccCCccccCCCCCCEEEccCCcCCCC-cchhhhcCCCCCEEEccCCcCCCCCc---cccCCCCCCCEEEccC
Q 041782          191 IGEFPSWLMNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILSLKSNQLRGYLP---SQIGSLTQLTALDLSC  259 (821)
Q Consensus       191 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~  259 (821)
                      .+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        77 ~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            877888788889999999999998863 34788889999999999999886655   4788889999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=4.9e-15  Score=157.57  Aligned_cols=82  Identities=17%  Similarity=0.264  Sum_probs=45.1

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCccc-EEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLK-MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      .|.++++|+++++.+| +....+      .+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.+.+..
T Consensus       245 aF~~~~~L~~l~l~~n-i~~I~~------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a  316 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LKTIGQ------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL  316 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred             hhhCCCCCCEEECCcc-cceehH------HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence            4555566666666555 332211      2344556665 666655 444444455666666666666666666555555


Q ss_pred             hCCCCCCCEEE
Q 041782          519 LGTLPELKVLM  529 (821)
Q Consensus       519 l~~l~~L~~L~  529 (821)
                      |.++++|+.++
T Consensus       317 F~~~~~L~~ly  327 (329)
T 3sb4_A          317 FGNGVPSKLIY  327 (329)
T ss_dssp             TCTTCCCCEEE
T ss_pred             hcCCcchhhhc
Confidence            66666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=4.6e-14  Score=137.05  Aligned_cols=127  Identities=23%  Similarity=0.268  Sum_probs=77.8

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL  233 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  233 (821)
                      +++++++|.++..+.    .+  .++|++|++++|.+. .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        13 ~~l~~~~~~l~~ip~----~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK----GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCSSCCS----CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCCcCCC----CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence            456666666554322    11  135566666666554 45556666666666666666666655566666666666666


Q ss_pred             cCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCce
Q 041782          234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  287 (821)
                      ++|++++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666666665666666666666666666666544445666666666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=7.9e-14  Score=133.66  Aligned_cols=110  Identities=28%  Similarity=0.300  Sum_probs=57.8

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782          179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS  258 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  258 (821)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44444444444443333344555555555555555554444445555555555555555554444445555555555555


Q ss_pred             CccCCCCCCccccCCCCcCeeccccCCcee
Q 041782          259 CNQFQGPVPSSISELKRLEYLDLHSNNLSG  288 (821)
Q Consensus       259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  288 (821)
                      +|.+++..+..+..+++|++|++++|.+.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            555554433344555555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.1e-13  Score=132.78  Aligned_cols=112  Identities=25%  Similarity=0.255  Sum_probs=70.6

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +|++|++++|.+++..+   ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus        29 ~l~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           29 SATRLELESNKLQSLPH---GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEeCCCcccEeCH---HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            44444444444444433   333444555555555555544444446677777777777777776666667777788888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCCCCC
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV  266 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  266 (821)
                      ++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88888777655555677888888888888777543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=134.51  Aligned_cols=108  Identities=22%  Similarity=0.269  Sum_probs=72.4

Q ss_pred             CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEE
Q 041782          152 KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTIL  231 (821)
Q Consensus       152 ~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  231 (821)
                      +|++|+|++|.++ .+|   ..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus        32 ~l~~L~L~~n~i~-~ip---~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TCCEEECCSSCCC-SCC---GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCc-hhH---HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            4555555555554 233   344555555555555555555555567777777777777777776666677777778888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          232 SLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       232 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      +|++|.++...+..|..+++|++|++++|.+.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88887777655556777888888888888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=2.6e-14  Score=151.90  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=77.1

Q ss_pred             cccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCC-eEeCCCCcccccCCCCccccCCccEE
Q 041782          634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLE-SLDLSNNNLSGEIPRQLAELTSLAVF  712 (821)
Q Consensus       634 ~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  712 (821)
                      ++.|+.++|++|+++...+..|.++.+|++|+|++| ++...+..|.++++|+ .+++.+ +++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            456999999999999666678999999999999998 8767778899999999 999999 8887888999999999999


Q ss_pred             EcccCcccc
Q 041782          713 DVSDNNLTG  721 (821)
Q Consensus       713 ~ls~N~l~g  721 (821)
                      ++++|+++.
T Consensus       303 ~l~~n~i~~  311 (329)
T 3sb4_A          303 LATGDKITT  311 (329)
T ss_dssp             EECSSCCCE
T ss_pred             EeCCCccCc
Confidence            999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=6.1e-14  Score=134.28  Aligned_cols=132  Identities=18%  Similarity=0.156  Sum_probs=92.7

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCC-CCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQ-TELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANL  225 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l-~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  225 (821)
                      +.++.+|++|++++|.++.. +   . +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~---~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l   87 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-E---N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   87 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C---C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             cCCcCCceEEEeeCCCCchh-H---H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence            45566677777777776643 3   1 3333 3677777777776553  467778888888888888875544555788


Q ss_pred             CCCCEEEccCCcCCCCCcc--ccCCCCCCCEEEccCccCCCCCCcc----ccCCCCcCeeccccCCce
Q 041782          226 NRLTILSLKSNQLRGYLPS--QIGSLTQLTALDLSCNQFQGPVPSS----ISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       226 ~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~  287 (821)
                      ++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|++|+++.|...
T Consensus        88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888888886 4554  6778888888888888887 44553    677788888888777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=1.8e-13  Score=129.86  Aligned_cols=90  Identities=22%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS  715 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  715 (821)
                      .++.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            48899999999999889999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             cCcccccCCC
Q 041782          716 DNNLTGQIPQ  725 (821)
Q Consensus       716 ~N~l~g~iP~  725 (821)
                      +|++++.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999987763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.3e-13  Score=130.26  Aligned_cols=133  Identities=20%  Similarity=0.164  Sum_probs=106.6

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCC-CCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLT-KLKCLELSQNNFSSPHSASFSWIAKQTELSWLALA  186 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~  186 (821)
                      .+..+++|++|++++|.+.  .+|.              +..+. +|++|++++|.+++.     ..+..+++|++|+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~--~i~~--------------~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls   72 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP--VIEN--------------LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVN   72 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC--SCCC--------------GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECC
T ss_pred             hcCCcCCceEEEeeCCCCc--hhHH--------------hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECC
Confidence            5677888999999999885  2443              34444 899999999998875     357788899999999


Q ss_pred             CccccccCCccccCCCCCCEEEccCCcCCCCcch--hhhcCCCCCEEEccCCcCCCCCccc----cCCCCCCCEEEccCc
Q 041782          187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPN--WLANLNRLTILSLKSNQLRGYLPSQ----IGSLTQLTALDLSCN  260 (821)
Q Consensus       187 ~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~Ls~n  260 (821)
                      +|.+.+..+..+..+++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|++|++++|
T Consensus        73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           73 NNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             SSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence            99987654455588999999999999996 5565  7889999999999999998 45654    888999999999988


Q ss_pred             cCC
Q 041782          261 QFQ  263 (821)
Q Consensus       261 ~l~  263 (821)
                      ...
T Consensus       151 ~~~  153 (176)
T 1a9n_A          151 KLK  153 (176)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=5.5e-15  Score=144.61  Aligned_cols=81  Identities=25%  Similarity=0.334  Sum_probs=60.4

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchh-hhhcCccCCCeEeCCCCcccccCCCC----------cc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP-SSLGNLTVLESLDLSNNNLSGEIPRQ----------LA  704 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~  704 (821)
                      .|+.|++++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|++++.+|..          +.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            37778888888875 44 57778888888888888875433 46788888888888888888776654          77


Q ss_pred             ccCCccEEEcccCccc
Q 041782          705 ELTSLAVFDVSDNNLT  720 (821)
Q Consensus       705 ~l~~L~~L~ls~N~l~  720 (821)
                      .+++|++||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            788888886  56555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=6e-13  Score=126.73  Aligned_cols=89  Identities=24%  Similarity=0.249  Sum_probs=82.3

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS  715 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  715 (821)
                      .|+.|+|++|++++..|..|+++++|++|+|++|++++..+..|+.+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            48899999999999989999999999999999999998777778999999999999999998777779999999999999


Q ss_pred             cCcccccCC
Q 041782          716 DNNLTGQIP  724 (821)
Q Consensus       716 ~N~l~g~iP  724 (821)
                      +|++.+..+
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            999997654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=2.4e-15  Score=147.23  Aligned_cols=151  Identities=22%  Similarity=0.208  Sum_probs=79.6

Q ss_pred             CCCCEEEcCCCCCCCCCCC--Cc-hhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCC
Q 041782          151 TKLKCLELSQNNFSSPHSA--SF-SWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR  227 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~--~~-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  227 (821)
                      ..++.++++.+.+++..|.  .+ ..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444330  00 144555556666666655544 44 5556666666666666665 45555555566


Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCC-ccccCCCCcCeeccccCCceeeccc--------ccccCC
Q 041782          228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVP-SSISELKRLEYLDLHSNNLSGNVYI--------EELLPK  298 (821)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~l~~  298 (821)
                      |++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+.        ...+..
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            6666666666654 23 45556666666666666653221 2455666666666666665543221        012455


Q ss_pred             CCCCCeEE
Q 041782          299 LKSLIVLF  306 (821)
Q Consensus       299 l~~L~~L~  306 (821)
                      +++|+.|+
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            56666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=4.6e-12  Score=120.12  Aligned_cols=86  Identities=31%  Similarity=0.302  Sum_probs=40.1

Q ss_pred             CCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeecc
Q 041782          202 TQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDL  281 (821)
Q Consensus       202 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  281 (821)
                      ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34444444444444444444444444444444444444433334444445555555555444433334444444444444


Q ss_pred             ccCCce
Q 041782          282 HSNNLS  287 (821)
Q Consensus       282 ~~n~l~  287 (821)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=3.3e-11  Score=130.74  Aligned_cols=85  Identities=11%  Similarity=0.089  Sum_probs=38.9

Q ss_pred             ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCC-C
Q 041782          471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF-P  549 (821)
Q Consensus       471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~  549 (821)
                      |.+|++|+.+++.+ .++..-..+|.+|++|+.++|..+ ++.+...+|.++ +|+.+++.+|......+..+  ..+ .
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~  370 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPD  370 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCT
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCC
Confidence            33444444444442 233333344555555555555332 444444455555 55555555554443222222  222 2


Q ss_pred             CCcEEEccCCc
Q 041782          550 KLRIIDLSHNR  560 (821)
Q Consensus       550 ~L~~L~Ls~N~  560 (821)
                      +++.|++..+.
T Consensus       371 ~l~~l~vp~~~  381 (401)
T 4fdw_A          371 DITVIRVPAES  381 (401)
T ss_dssp             TCCEEEECGGG
T ss_pred             CccEEEeCHHH
Confidence            45566555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=6.9e-12  Score=119.33  Aligned_cols=104  Identities=24%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL  233 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  233 (821)
                      +.+++++|.++..+.    .+  .++|++|++++|.+.+..|..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        15 ~~l~~~~n~l~~iP~----~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA----GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCCSSCCS----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCCCccCC----Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            566666666543221    11  144444444444444444444444444444444444444333333344444444444


Q ss_pred             cCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          234 KSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       234 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      ++|++++..+..|..+++|++|++++|.+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            444444333333444444444444444443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.30  E-value=1.3e-10  Score=126.69  Aligned_cols=60  Identities=25%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             ccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccC
Q 041782          471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQF  532 (821)
Q Consensus       471 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  532 (821)
                      |.++++|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++.+...+|.++++|+.+++..
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            444555555555432 33233345555555555555444 4444444555555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.28  E-value=7.3e-11  Score=128.02  Aligned_cols=109  Identities=14%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      .|.+|++|+.+++.+|+++.....+      |. +.+|+.+.+.++ ++.....+|.+|++|+.+++..+ ++.+...+|
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~a------F~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF  245 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPAST------FV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF  245 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTT------TT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred             HhhCcccCCeeecCCCcceEechhh------Ee-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence            4555556666666555555332222      22 345555555533 44344445555556666655543 444444445


Q ss_pred             CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcC
Q 041782          520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF  561 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  561 (821)
                      .+ .+|+.+.+. +.+...-...+  ..+++|+.+++.+|.+
T Consensus       246 ~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          246 RE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTF  283 (401)
T ss_dssp             TT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCC
T ss_pred             cc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccc
Confidence            44 455555552 22332222222  3455555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.27  E-value=2.1e-10  Score=124.93  Aligned_cols=312  Identities=14%  Similarity=0.093  Sum_probs=169.0

Q ss_pred             hhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCC
Q 041782          172 SWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQ  251 (821)
Q Consensus       172 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  251 (821)
                      ..|.++++|+.+.+..+ +...-..+|.++++|+.+++..+ ++......|.++.+|+.+.+..+ +......+|.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            34456666776666532 33223345666677777766544 44334455666666666555433 23233344544443


Q ss_pred             CCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEE
Q 041782          252 LTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFL  331 (821)
Q Consensus       252 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L  331 (821)
                      ++.......  ......+|.++++|+.+.+.++...  +.. ..|..+.+|+.+.+..+ ++.+...             
T Consensus       142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-~~F~~c~~L~~i~l~~~-~~~I~~~-------------  202 (394)
T 4fs7_A          142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET--LHN-GLFSGCGKLKSIKLPRN-LKIIRDY-------------  202 (394)
T ss_dssp             SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE--ECT-TTTTTCTTCCBCCCCTT-CCEECTT-------------
T ss_pred             cccccCccc--cccchhhhcccCCCcEEecCCccce--ecc-ccccCCCCceEEEcCCC-ceEeCch-------------
Confidence            322222221  1122345666666666666544321  222 34556666666665543 3333222             


Q ss_pred             ecCCCCCchhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCc
Q 041782          332 GLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNK  411 (821)
Q Consensus       332 ~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~  411 (821)
                                  .+..+..|+.+.+..+...  +.......  ..|+.+.+... ++.+... .+..+..++.+.+..+.
T Consensus       203 ------------~F~~~~~L~~i~~~~~~~~--i~~~~~~~--~~l~~i~ip~~-~~~i~~~-~f~~~~~l~~~~~~~~~  264 (394)
T 4fs7_A          203 ------------CFAECILLENMEFPNSLYY--LGDFALSK--TGVKNIIIPDS-FTELGKS-VFYGCTDLESISIQNNK  264 (394)
T ss_dssp             ------------TTTTCTTCCBCCCCTTCCE--ECTTTTTT--CCCCEEEECTT-CCEECSS-TTTTCSSCCEEEECCTT
T ss_pred             ------------hhccccccceeecCCCceE--eehhhccc--CCCceEEECCC-ceecccc-cccccccceeEEcCCCc
Confidence                        2444555555555443221  11111112  45555555432 1212111 23445566666665442


Q ss_pred             ccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC
Q 041782          412 LQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI  491 (821)
Q Consensus       412 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~  491 (821)
                      ..                      .....+..+..++.+....+.+.    .     ..|.++.+|+.+.+.++ ++..-
T Consensus       265 ~~----------------------i~~~~F~~~~~l~~~~~~~~~i~----~-----~~F~~~~~L~~i~l~~~-i~~I~  312 (394)
T 4fs7_A          265 LR----------------------IGGSLFYNCSGLKKVIYGSVIVP----E-----KTFYGCSSLTEVKLLDS-VKFIG  312 (394)
T ss_dssp             CE----------------------ECSCTTTTCTTCCEEEECSSEEC----T-----TTTTTCTTCCEEEECTT-CCEEC
T ss_pred             ce----------------------eeccccccccccceeccCceeec----c-----ccccccccccccccccc-cceec
Confidence            21                      12334666777887777654322    1     24667888998888765 55455


Q ss_pred             chhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCC
Q 041782          492 PRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN  559 (821)
Q Consensus       492 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  559 (821)
                      ..+|.+|.+|+.++|..+ ++.+...+|.++.+|+.+++..+ +...-...+  ..+++|+.+++..+
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF--QGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB--TTCTTCCEEEEEGG
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh--hCCCCCCEEEECCC
Confidence            677889999999999754 77777788889999999998766 443323333  66888988888654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=3.6e-13  Score=144.78  Aligned_cols=113  Identities=21%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCCEEEccCCcCCCCcchhhh-----cCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCC----CCc
Q 041782          202 TQLTYINFDLNQLTGPIPNWLA-----NLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGP----VPS  268 (821)
Q Consensus       202 ~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  268 (821)
                      ++|++|+|++|.++......+.     ..++|++|+|++|.++..    ++..+..+++|++|+|++|.+++.    ++.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            3444555555544432222221     234455555555554421    222334445555555555554421    122


Q ss_pred             cccCCCCcCeeccccCCceeec--ccccccCCCCCCCeEECCCcccce
Q 041782          269 SISELKRLEYLDLHSNNLSGNV--YIEELLPKLKSLIVLFLSANNLSL  314 (821)
Q Consensus       269 ~l~~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~  314 (821)
                      .+...++|++|+|++|.+++..  .....+...++|++|+|++|.++.
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            3344445555555555544211  111223344555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=4.4e-13  Score=144.06  Aligned_cols=148  Identities=20%  Similarity=0.151  Sum_probs=79.8

Q ss_pred             CCCCEEEccCCcCCCCcchhh-hcCCCCCEEEccCCcCCCCCcccc-----CCCCCCCEEEccCccCCCC----CCcccc
Q 041782          202 TQLTYINFDLNQLTGPIPNWL-ANLNRLTILSLKSNQLRGYLPSQI-----GSLTQLTALDLSCNQFQGP----VPSSIS  271 (821)
Q Consensus       202 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~l~  271 (821)
                      ++|++|+|++|.++......+ ..+++|++|+|++|.++......+     ...++|++|+|++|.+++.    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            566777777776654322222 234567777777777764433333     2356677777777766532    223334


Q ss_pred             CCCCcCeeccccCCceeec--ccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCCC
Q 041782          272 ELKRLEYLDLHSNNLSGNV--YIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQD  349 (821)
Q Consensus       272 ~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~  349 (821)
                      .+++|++|+|++|.+.+..  .....+...++|++|+|++|.++.....                     .+...+...+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~---------------------~l~~~L~~~~  239 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL---------------------ALARAAREHP  239 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH---------------------HHHHHHHHCS
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH---------------------HHHHHHHhCC
Confidence            5666666666666655311  1112344455555555555555432211                     2334455566


Q ss_pred             ccceEecccCCCCCCCCcchh
Q 041782          350 QLELLDLSANKIPGKIPGWLL  370 (821)
Q Consensus       350 ~L~~L~Ls~n~l~~~~p~~l~  370 (821)
                      +|++|+|++|.+++.....+.
T Consensus       240 ~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          240 SLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             SCCEEECTTSSCCHHHHHHHH
T ss_pred             CCCEEeccCCCCCHHHHHHHH
Confidence            777777777776654443333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=5e-11  Score=127.67  Aligned_cols=85  Identities=24%  Similarity=0.188  Sum_probs=43.4

Q ss_pred             cccEEEccc-ccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEc
Q 041782          636 FLTGIILSN-NKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV  714 (821)
Q Consensus       636 ~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  714 (821)
                      .|+.|+|++ |++++..|..|++|++|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            355555553 555544444555555555555555555555555555555555555555555544444444333 555555


Q ss_pred             ccCcccc
Q 041782          715 SDNNLTG  721 (821)
Q Consensus       715 s~N~l~g  721 (821)
                      ++|++.+
T Consensus       111 ~~N~~~c  117 (347)
T 2ifg_A          111 SGNPLHC  117 (347)
T ss_dssp             CSSCCCC
T ss_pred             eCCCccC
Confidence            5555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=2.9e-10  Score=121.61  Aligned_cols=92  Identities=24%  Similarity=0.226  Sum_probs=47.2

Q ss_pred             CCccccCCCCCCEEEccC-CcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccC
Q 041782          194 FPSWLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE  272 (821)
Q Consensus       194 ~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  272 (821)
                      +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  102 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG  102 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence            444 55555555555553 5555444455555555555555555555555555555555555555555555433333333


Q ss_pred             CCCcCeeccccCCce
Q 041782          273 LKRLEYLDLHSNNLS  287 (821)
Q Consensus       273 l~~L~~L~L~~n~l~  287 (821)
                      ++ |+.|++.+|.+.
T Consensus       103 ~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          103 LS-LQELVLSGNPLH  116 (347)
T ss_dssp             CC-CCEEECCSSCCC
T ss_pred             CC-ceEEEeeCCCcc
Confidence            33 555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.2e-08  Score=111.13  Aligned_cols=107  Identities=17%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhh
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWL  519 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l  519 (821)
                      .|.++++|+.+.+.. .+... +     ..+|.+|.+|+.+++..+ ++..-..+|.+|.+|+.+.|..+ ++.+...+|
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I-~-----~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF  353 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITEL-P-----ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF  353 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEE-C-----TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred             ccccccccccccCCC-ccccc-C-----ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence            455566666666642 23222 1     124556666777666543 44344456666677777766543 555555666


Q ss_pred             CCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCc
Q 041782          520 GTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNR  560 (821)
Q Consensus       520 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  560 (821)
                      .++++|+.+++.++....   ..+  ..+.+|+.+.+..|.
T Consensus       354 ~~C~~L~~i~~~~~~~~~---~~~--~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          354 SNCTALNNIEYSGSRSQW---NAI--STDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTCTTCCEEEESSCHHHH---HTC--BCCCCC---------
T ss_pred             hCCCCCCEEEECCceeeh---hhh--hccCCCCEEEeCCCC
Confidence            667777777666654331   111  335556666555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.93  E-value=9e-08  Score=104.03  Aligned_cols=86  Identities=15%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      ..|.++.+|+.++|..+ ++..      ...+|.+|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++....   ..
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I------~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~  373 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQI------LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NA  373 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEE------CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HT
T ss_pred             eeecCCCCcCEEEeCCc-ccEe------hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hh
Confidence            46778889999988754 3322      2236788999999999755 555556789999999999999876432   45


Q ss_pred             hCCCCCCCEEEccCCcC
Q 041782          519 LGTLPELKVLMLQFNRF  535 (821)
Q Consensus       519 l~~l~~L~~L~L~~N~l  535 (821)
                      +..+.+|+.+.+..+.+
T Consensus       374 ~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          374 ISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CBCCCCC----------
T ss_pred             hhccCCCCEEEeCCCCE
Confidence            66778888888876654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.77  E-value=1.6e-10  Score=116.36  Aligned_cols=80  Identities=23%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             cCCCCCCEEEccCCcCCC--CcchhhhcCCCCCEEEccCCcCCCCCccccCCCC--CCCEEEccCccCCCCCCc------
Q 041782          199 MNLTQLTYINFDLNQLTG--PIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT--QLTALDLSCNQFQGPVPS------  268 (821)
Q Consensus       199 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~------  268 (821)
                      .++++|++|+|++|.+++  .+|..+..+++|++|+|++|++++.  ..+..++  +|++|+|++|.+.+.+|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456777777777777776  3456666777777777777777754  2333333  777777777777655442      


Q ss_pred             -cccCCCCcCeec
Q 041782          269 -SISELKRLEYLD  280 (821)
Q Consensus       269 -~l~~l~~L~~L~  280 (821)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             234555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=9.5e-09  Score=109.23  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=44.9

Q ss_pred             cccEEEcccccccCccccccc---cCCCCCEEeCCCcccCcc----hhhhhcCccCCCeEeCCCCcccccCCCCccc-cC
Q 041782          636 FLTGIILSNNKLIGKIPTSIS---ELKGLNCLNLSGNNLLGH----IPSSLGNLTVLESLDLSNNNLSGEIPRQLAE-LT  707 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~---~L~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~  707 (821)
                      .|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. + 
T Consensus       253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-  331 (362)
T 2ra8_A          253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-  331 (362)
T ss_dssp             TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred             CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence            356666666655543332222   356677777777776653    3333455677777777777766443333332 1 


Q ss_pred             CccEEEcccCc
Q 041782          708 SLAVFDVSDNN  718 (821)
Q Consensus       708 ~L~~L~ls~N~  718 (821)
                       ...+++++++
T Consensus       332 -g~~~~~~~~~  341 (362)
T 2ra8_A          332 -PMKIDVSDSQ  341 (362)
T ss_dssp             -CSEEECCSBC
T ss_pred             -CCEEEecCCc
Confidence             2456676665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=3.3e-09  Score=112.78  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=38.3

Q ss_pred             hhhCCCCCcEEEcCCCcCcccCCcccc--C-cccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCc
Q 041782          440 WLCNLNSLRVLDLSHNFLSGVLPQCLS--N-SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP  516 (821)
Q Consensus       440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~--~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  516 (821)
                      ....+++|+.|.+..+.....--.++.  . ...+..+++|+.|++++|.-. .++. +. +++|++|+|..|.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence            345567777777755432110000000  0 012233455666666555211 1221 22 4555666655555543322


Q ss_pred             hhhC--CCCCCCEEEcc
Q 041782          517 SWLG--TLPELKVLMLQ  531 (821)
Q Consensus       517 ~~l~--~l~~L~~L~L~  531 (821)
                      ..+.  .+|+|+.|+|+
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            2222  45555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.63  E-value=2.9e-06  Score=91.52  Aligned_cols=87  Identities=17%  Similarity=0.251  Sum_probs=62.8

Q ss_pred             hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      ..+.++.+|+.+.+..+ +... +     ..+|.++++|+.+.+.++.++..-..+|.+|.+|+.++|..+ ++.+...+
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i-~-----~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a  328 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTV-P-----YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA  328 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEE-C-----TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             cccceeehhcccccccc-ceec-c-----ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence            34666777888877543 3322 1     235677888888888888777666678888888888888754 66666778


Q ss_pred             hCCCCCCCEEEccCC
Q 041782          519 LGTLPELKVLMLQFN  533 (821)
Q Consensus       519 l~~l~~L~~L~L~~N  533 (821)
                      |.++++|+.+.+..+
T Consensus       329 F~~C~~L~~i~ip~~  343 (379)
T 4h09_A          329 FKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCCCCCCTT
T ss_pred             hhCCCCCCEEEECCc
Confidence            888888888888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.46  E-value=9.4e-06  Score=87.51  Aligned_cols=122  Identities=15%  Similarity=0.154  Sum_probs=81.0

Q ss_pred             hhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchh
Q 041782          439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW  518 (821)
Q Consensus       439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  518 (821)
                      ..+.++..|+.+.+..+ ++..      ...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+....
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I------~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a  305 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSI------GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV  305 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEE------CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred             ccccCCccceEEEcCCC-ccEe------Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhh
Confidence            45667778888887654 3322      1234667788888888654 44344567888888888888888888777788


Q ss_pred             hCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhcc
Q 041782          519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW  573 (821)
Q Consensus       519 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l  573 (821)
                      |.++.+|+.+.|..+ ++..-...+  ..+++|+.+.+..+ ++ .|....|.++
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF--~~C~~L~~i~ip~~-v~-~I~~~aF~~c  355 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAF--KNCKALSTISYPKS-IT-LIESGAFEGS  355 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHh--hCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence            888888888888654 432222333  56788888877654 33 4555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=6.7e-08  Score=92.55  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             ccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEc--cCccCC
Q 041782          198 LMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDL--SCNQFQ  263 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--s~n~l~  263 (821)
                      +...++|++|+|++|.+...    +...+...++|++|+|++|.++..    +...+...++|++|+|  ++|.+.
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            34445555555555555431    223333444555555555555432    2233444445555555  444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=8.5e-08  Score=91.84  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             CccccCCCCCCEEEccCC-cCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCC
Q 041782          195 PSWLMNLTQLTYINFDLN-QLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGP  265 (821)
Q Consensus       195 p~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~  265 (821)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667888888888888 77642    345566678899999999988743    234455667888888888888753


Q ss_pred             ----CCccccCCCCcCeecc--ccCCceeec--ccccccCCCCCCCeEECCCcccc
Q 041782          266 ----VPSSISELKRLEYLDL--HSNNLSGNV--YIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       266 ----~p~~l~~l~~L~~L~L--~~n~l~~~~--~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                          +...+...+.|++|++  ++|.+....  .....+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                3445666677888888  777776321  11233555677777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=3.2e-07  Score=92.20  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             EEccccccc---CccccccccCCCCCEEeCCCcccCc--chhhhhcCccCCCeEeCCCCcccccCCCCccccC--CccEE
Q 041782          640 IILSNNKLI---GKIPTSISELKGLNCLNLSGNNLLG--HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELT--SLAVF  712 (821)
Q Consensus       640 L~Ls~N~l~---~~~p~~l~~L~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  712 (821)
                      ++++.|...   +.++....++++|++|+|++|++++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            667777433   2223333568899999999999997  5667788899999999999999875  3455555  89999


Q ss_pred             EcccCcccccCCC
Q 041782          713 DVSDNNLTGQIPQ  725 (821)
Q Consensus       713 ~ls~N~l~g~iP~  725 (821)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=2.6e-06  Score=79.21  Aligned_cols=82  Identities=10%  Similarity=0.114  Sum_probs=34.6

Q ss_pred             CCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCc-CCCCCccccCCC----CCCCEEEccCcc-CCCCCCccccCCCCc
Q 041782          203 QLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGYLPSQIGSL----TQLTALDLSCNQ-FQGPVPSSISELKRL  276 (821)
Q Consensus       203 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  276 (821)
                      .|++||+++|.++...-..+..+++|++|+|++|. +++.--..++.+    ++|++|+|++|. +++..-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34555555554444333334444555555555542 333222223332    234555554442 333222233444444


Q ss_pred             CeeccccC
Q 041782          277 EYLDLHSN  284 (821)
Q Consensus       277 ~~L~L~~n  284 (821)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=4.1e-06  Score=77.87  Aligned_cols=83  Identities=11%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             cccEEEcccccccCccccccccCCCCCEEeCCCcc-cCcchhhhhcCc----cCCCeEeCCCCc-ccccCCCCccccCCc
Q 041782          636 FLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNN-LLGHIPSSLGNL----TVLESLDLSNNN-LSGEIPRQLAELTSL  709 (821)
Q Consensus       636 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~ip~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  709 (821)
                      .|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            48999999999987766778899999999999995 887666667765    479999999985 876555567889999


Q ss_pred             cEEEcccCc
Q 041782          710 AVFDVSDNN  718 (821)
Q Consensus       710 ~~L~ls~N~  718 (821)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.96  E-value=0.00026  Score=67.08  Aligned_cols=64  Identities=11%  Similarity=0.106  Sum_probs=31.3

Q ss_pred             cccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCc
Q 041782          197 WLMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCN  260 (821)
Q Consensus       197 ~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n  260 (821)
                      .+..-+.|++|+|++|.+...    +.+.+..-+.|++|+|++|.|...    +.+++..-+.|++|+|++|
T Consensus        65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            344445556666666655432    223333445566666666655532    1223334445555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.72  E-value=0.00036  Score=66.07  Aligned_cols=114  Identities=14%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             ccCCCCCCEEEccCC-cCCC----CcchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCCCCC--
Q 041782          198 LMNLTQLTYINFDLN-QLTG----PIPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQGPV--  266 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~--  266 (821)
                      +.+-+.|++|+|++| .|..    .+.+.+..-+.|+.|+|++|.+...    +.+.+..-+.|++|+|++|.|.+..  
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            445667777787775 6643    2344556667788888888887743    2333445677888888888776432  


Q ss_pred             --CccccCCCCcCeeccccCC---ceee--cccccccCCCCCCCeEECCCcc
Q 041782          267 --PSSISELKRLEYLDLHSNN---LSGN--VYIEELLPKLKSLIVLFLSANN  311 (821)
Q Consensus       267 --p~~l~~l~~L~~L~L~~n~---l~~~--~~~~~~l~~l~~L~~L~L~~n~  311 (821)
                        -+.+..-+.|++|+|++|.   +...  ....+.+..-+.|+.|+++.|.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence              1233444557777776542   2211  1111234445566666665544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.72  E-value=0.0016  Score=57.47  Aligned_cols=38  Identities=26%  Similarity=0.251  Sum_probs=22.2

Q ss_pred             CCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782          684 VLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       684 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                      +|++|+|++|+|+...+..|..+++|++|+|++|++.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            45555666666555555555666666666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.59  E-value=0.0029  Score=55.88  Aligned_cols=58  Identities=28%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             cEEEccccccc-CccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccc
Q 041782          638 TGIILSNNKLI-GKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSG  697 (821)
Q Consensus       638 ~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  697 (821)
                      ..++.+++.++ ..+|..+.  .+|++|+|++|+|+...++.|..+++|++|+|++|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            46888999886 46776543  479999999999998777889999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	821
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 6e-20
 Identities = 69/319 (21%), Positives = 118/319 (36%), Gaps = 51/319 (15%)

Query: 29  QLCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCC--SWDGVKCNEDT 86
           +LC+  ++ ALLQ K+ L                +SW       DCC  +W GV C+ DT
Sbjct: 1   ELCNPQDKQALLQIKKDL----------GNPTTLSSWL---PTTDCCNRTWLGVLCDTDT 47

Query: 87  G--HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEI--------MN 136
               V  L+L+   +       SSL +L +L +L +   N     IP  I        + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 137 LSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS 196
           ++  +        L+++K L     ++++        I+    L  +      + G  P 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 197 WLMNLTQLTYINFDL-NQLTGPIPNWLANLNRLTILSLKS-------------------- 235
              + ++L        N+LTG IP   ANLN   +   ++                    
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 236 --NQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIE 293
                  +   ++G    L  LDL  N+  G +P  +++LK L  L++  NNL G +   
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--- 284

Query: 294 ELLPKLKSLIVLFLSANNL 312
                L+   V   + N  
Sbjct: 285 PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 9e-19
 Identities = 68/313 (21%), Positives = 107/313 (34%), Gaps = 50/313 (15%)

Query: 442 CNLNS----LRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL-LQGRIPRSLA 496
           C+ ++    +  LDLS   L    P   S      N   L  + +     L G IP ++A
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDL 556
             T L +L + +  ++   P +L  +  L  L   +N   G +  P +    P L  I  
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSLPNLVGITF 156

Query: 557 SHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYA 616
             NR SG +P  Y              L          L   +P + A +    +     
Sbjct: 157 DGNRISGAIPDSYGSFSK---------LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 617 YSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIP 676
                 +     +       L    L+ +     +  +++ L      +L  N + G +P
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL------DLRNNRIYGTLP 261

Query: 677 SSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSS 736
             L  L  L SL++S NNL GEIP                        QG     F+ S+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP------------------------QGGNLQRFDVSA 297

Query: 737 FEGNPGLCGKPLS 749
           +  N  LCG PL 
Sbjct: 298 YANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 4e-18
 Identities = 62/299 (20%), Positives = 96/299 (32%), Gaps = 42/299 (14%)

Query: 402 LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
           +  LDL    L  P PIP                     L NL  L        ++ G+ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSS-------------------LANLPYLN-----FLYIGGIN 87

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGT 521
                        T L  + ++H  + G IP  L+    L  LD   N ++   P  + +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 522 LPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANK 581
           LP L  +    NR  G I +                      KL +      N +     
Sbjct: 148 LPNLVGITFDGNRISGAIPD----------------SYGSFSKLFTSMTISRNRLTGKIP 191

Query: 582 SQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII 641
                +          +L   ++ +F         +             G   N    + 
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG-LD 250

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIP 700
           L NN++ G +P  +++LK L+ LN+S NNL G IP   GNL   +    +NN      P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 50/268 (18%), Positives = 89/268 (33%), Gaps = 8/268 (2%)

Query: 268 SSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNK 327
            + ++  R+  LDL   NL     I   L  L  L  L++   N  +        +L   
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 328 FVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLI 387
                  +       DFL+    L  LD S N + G +P  + ++   NL  +    N I
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDGNRI 161

Query: 388 TGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSL 447
           +G    S         ++ +  N+L G +P    +     V  +    +    +   +  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507
               +              +      + NL  +DL +N + G +P+ L     L  L++ 
Sbjct: 222 NTQKIHLAK-----NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 508 NNQIADIFPSWLGTLPELKVLMLQFNRF 535
            N +    P   G L    V     N+ 
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 47/281 (16%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 244 SQIGSLTQLTALDLSCNQFQG--PVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKS 301
                  ++  LDLS        P+PSS++ L  L +L +     +    I   + KL  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGINNLVGPIPPAIAKLTQ 102

Query: 302 LIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKI 361
           L  L+++  N+S    + ++       +     + +        +  +    +    N+I
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL-VGITFDGNRI 161

Query: 362 PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTD-------------------- 401
            G IP    + +            L          L                        
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 402 ---LVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
               + L   S           ++     + NN + G L   L  L  L  L++S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCT 499
           G +PQ         N     +   ++N      P  L  CT
Sbjct: 282 GEIPQ-------GGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 32/179 (17%), Positives = 46/179 (25%), Gaps = 1/179 (0%)

Query: 65  WNLEEEDRDCCSWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNN 124
                                 G     N  S  I  S  S S LF    +    L    
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 125 FNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLA 184
                  +      S +        L          +   +  +     +     L+ L 
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250

Query: 185 LANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLP 243
           L N  + G  P  L  L  L  +N   N L G IP    NL R  + +  +N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (195), Expect = 8e-17
 Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 18/266 (6%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLS 287
             +L L++N++         +L  L  L L  N+     P + + L +LE L L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 288 GNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKE---FLDF 344
                   LP+     +  L  +   +           N+ + + L +  LK        
Sbjct: 93  E-------LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 345 LNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVT 404
                +L  + ++   I   IP  L      +L  ++L  N IT  D  S+  L  +L  
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGLPP----SLTELHLDGNKITKVDAASLKGLN-NLAK 199

Query: 405 LDLRSNKLQGPLP--IPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
           L L  N +       +     +  L  NN    K+   L +   ++V+ L +N +S +  
Sbjct: 200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQ 488
                        +   + L  N +Q
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 7e-12
 Identities = 48/277 (17%), Positives = 86/277 (31%), Gaps = 19/277 (6%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
                L+L  N  +      F        L  L L N  +    P     L +L  +   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI 270
            NQL          L  L +   +  ++R  + + +  +  +  L  +  +  G    + 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAF 146

Query: 271 SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF 330
             +K+L Y+ +   N++             SL  L L  N ++ +   ++   L N    
Sbjct: 147 QGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKITKVDAASLK-GLNNLAKL 200

Query: 331 LGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGF 390
               +         L +   L  L L+ NK+     G   +     +Q V L  N I+  
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK---YIQVVYLHNNNISAI 257

Query: 391 DRGSVV-----LLWTDLVTLDLRSNKLQGPLPIPPES 422
                              + L SN +Q    I P +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQY-WEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 8e-12
 Identities = 66/287 (22%), Positives = 102/287 (35%), Gaps = 31/287 (10%)

Query: 435 GKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRS 494
           G + P+ C    LRV+  S   L  V P+ L          +  ++DL +N +       
Sbjct: 1   GPVCPFRCQ-CHLRVVQCSDLGLEKV-PKDLP--------PDTALLDLQNNKITEIKDGD 50

Query: 495 LANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRII 554
             N   L  L L NN+I+ I P     L +L+ L L  N                +L+ +
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN----------------QLKEL 94

Query: 555 DLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYI 614
                +   +L        N I    KS    +       L      SS           
Sbjct: 95  PEKMPKTLQEL----RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 615 YAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGH 674
               I + +  I      +   LT + L  NK+      S+  L  L  L LS N++   
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 675 IPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG 721
              SL N   L  L L+NN L  ++P  LA+   + V  + +NN++ 
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 9e-11
 Identities = 54/300 (18%), Positives = 99/300 (33%), Gaps = 35/300 (11%)

Query: 404 TLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLP 462
            +      L+  P  +PP++ +  L  NN +T        NL +L  L L +N +S + P
Sbjct: 14  VVQCSDLGLEKVPKDLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISP 72

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
                   F     L+ + LS N L+    +       L       N+I  +  S    L
Sbjct: 73  GA------FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGL 123

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS 582
            ++ V+ L  N       E        KL  I ++    +  +P         + +    
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDG-- 180

Query: 583 QLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIIL 642
                        N I    +A +   +       S       ++      +  L  + L
Sbjct: 181 -------------NKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHL 226

Query: 643 SNNKLIGKIPTSISELKGLNCLNLSGNNL------LGHIPSSLGNLTVLESLDLSNNNLS 696
           +NNKL+ K+P  +++ K +  + L  NN+          P           + L +N + 
Sbjct: 227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 18/224 (8%)

Query: 350 QLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRS 409
            L  L L  NKI    PG    +    L+ + LS N +       +     +L   +   
Sbjct: 56  NLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKELPE-KMPKTLQELRVHENEI 112

Query: 410 NKLQGPL--PIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSN 467
            K++  +   +     +    +    +G        +  L  + ++   ++ +      +
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 172

Query: 468 SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKV 527
                    L  + L  N +      SL     L  L L  N I+ +    L   P L+ 
Sbjct: 173 ---------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 528 LMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQ 571
           L L  N+       P        ++++ L +N  S  + S  F 
Sbjct: 224 LHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISA-IGSNDFC 263

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 50/272 (18%), Positives = 85/272 (31%), Gaps = 47/272 (17%)

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           +L+++  S   L+ ++P+ L        LDL NN+I +I       L  L  L+L  N+ 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 536 HGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595
                 P       KL  + LS N+    LP K  +    ++V      K  +       
Sbjct: 68  SKIS--PGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI 655
             I+                                        +  +  K  G    + 
Sbjct: 125 QMIVVE--------------------------------------LGTNPLKSSGIENGAF 146

Query: 656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715
             +K L+ + ++  N+   IP  L     L  L L  N ++      L  L +LA   +S
Sbjct: 147 QGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 716 DNNLTGQIPQGKQFNTFENSSFEGNPGLCGKP 747
            N+++                   N  L   P
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 2/135 (1%)

Query: 644 NNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQL 703
           ++  + K+P  +        L+L  N +         NL  L +L L NN +S   P   
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 704 AELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNCEISESSQKEDQ 763
           A L  L    +S N L     +  +              +     +   ++       + 
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 764 DSETPFEFGWKIVLT 778
              +  E G    + 
Sbjct: 136 LKSSGIENGAFQGMK 150

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 3e-16
 Identities = 84/439 (19%), Positives = 146/439 (33%), Gaps = 58/439 (13%)

Query: 281 LHSNNLSGNVYIEELLP--KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL 338
           L S  ++ +  I ++     L   +   L   N++    +TV+    ++   L      +
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVT----DTVSQTDLDQVTTLQADRLGI 56

Query: 339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLL 398
           K  +D +   + L  ++ S N++    P   L      L  + ++ N             
Sbjct: 57  KS-IDGVEYLNNLTQINFSNNQLTDITPLKNLT----KLVDILMNNN------------- 98

Query: 399 WTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLS 458
               +T       L G      + T    + N     +L      ++ +  L    +   
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 459 GVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSW 518
                 +++ K   N T L+ +D+S N  +      LA  T LE L   NNQI+DI P  
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 519 LGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKV 578
           +     L  L L  N+         T      L  +DL++N+ S   P         +  
Sbjct: 217 IL--TNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTE 267

Query: 579 ANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLT 638
                 +     P   L                           N+  +++       LT
Sbjct: 268 LKLGANQISNISPLAGLTA-----------------LTNLELNENQLEDISPISNLKNLT 310

Query: 639 GIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE 698
            + L  N +    P  +S L  L  L  + N +     SSL NLT +  L   +N +S  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 699 IPRQLAELTSLAVFDVSDN 717
            P  LA LT +    ++D 
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.0 bits (183), Expect = 8e-15
 Identities = 71/367 (19%), Positives = 126/367 (34%), Gaps = 57/367 (15%)

Query: 198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
           L  +T L      +  + G     +  LN LT ++  +NQL    P  + +LT+L  + +
Sbjct: 43  LDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 95

Query: 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEE----------LLPKLKSLIVLFL 307
           + NQ     P +         L  +       +               +  + +L  L  
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
                       +        +     S N    +  L     LE L  + N+I    P 
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 215

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427
            +L     NL  ++L+ N +        +   T+L  LDL +N++    P+   + +  L
Sbjct: 216 GILT----NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268

Query: 428 VSNNLLTGKLAP---------------------WLCNLNSLRVLDLSHNFLSGVLPQCLS 466
                    ++P                      + NL +L  L L  N +S + P    
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---- 324

Query: 467 NSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELK 526
                 + T L+ +  ++N +      SLAN T + +L  G+NQI+D+ P  L  L  + 
Sbjct: 325 ----VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 527 VLMLQFN 533
            L L   
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.7 bits (182), Expect = 8e-15
 Identities = 77/421 (18%), Positives = 131/421 (31%), Gaps = 81/421 (19%)

Query: 76  SWDGVKCNEDTGHVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIM 135
           +        D   V  L          I S   + +L +L  ++ ++N            
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLT--------- 79

Query: 136 NLSSFSGQVPSLGNLTKLKCLELSQNNFS---------SPHSASFSWIAKQTELSWLALA 186
                   +  L NLTKL  + ++ N  +         +    +              L 
Sbjct: 80  -------DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 187 NINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQ-LRGYLPSQ 245
           N+N +    + + +++ L+ +        G     L  L  LT L        +    S 
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 246 IGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL 305
           +  LT L +L  + NQ     P  I     L+ L L+ N L         L  L +L  L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD----IGTLASLTNLTDL 246

Query: 306 FLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKI 365
            L+ N +S                            L  L+   +L  L L AN+I    
Sbjct: 247 DLANNQIS---------------------------NLAPLSGLTKLTELKLGANQISNIS 279

Query: 366 PGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIH 425
           P   L   T      N   ++    +         +L  L L  N +    P+   + + 
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISN-------LKNLTYLTLYFNNISDISPVSSLTKLQ 332

Query: 426 YL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
            L  +NN ++      L NL ++  L   HN +S + P          N T +  + L+ 
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--------LANLTRITQLGLND 382

Query: 485 N 485
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 46/282 (16%), Positives = 89/282 (31%), Gaps = 21/282 (7%)

Query: 443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
            L       L    ++  + Q         +   +  +      ++      +     L 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--------TDLDQVTTLQADRLGIKS--IDGVEYLNNLT 69

Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
            ++  NNQ+ DI P  L  L +L  +++  N+        +   +       +   +   
Sbjct: 70  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMV 622
                           +N                    +    +   +            
Sbjct: 128 ---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682
           NK  +++       L  +I +NN++    P  I     L+ L+L+GN L      +L +L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASL 240

Query: 683 TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIP 724
           T L  LDL+NN +S   P  L+ LT L    +  N ++   P
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPR 701
           L    +   +  S ++L  +  L      +       +  L  L  ++ SNN L+   P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP- 83

Query: 702 QLAELTSLAVFDVSDNNLTGQIPQGKQFNTFEN 734
            L  LT L    +++N +    P     N    
Sbjct: 84  -LKNLTKLVDILMNNNQIADITPLANLTNLTGL 115

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 2e-11
 Identities = 61/467 (13%), Positives = 119/467 (25%), Gaps = 33/467 (7%)

Query: 252 LTALDLSCNQFQ-GPVPSSISELKRLEYLDLHSNNLS--GNVYIEELLPKLKSLIVLFLS 308
           + +LD+ C +         +  L++ + + L    L+      I   L    +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 309 ANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPGW 368
           +N L  +             V  GL + + K           ++ L L    + G   G 
Sbjct: 64  SNELGDVGV---------HCVLQGLQTPSCK-----------IQKLSLQNCCLTGAGCGV 103

Query: 369 LLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV 428
           L +          L  +     D G  +L    L               +   S      
Sbjct: 104 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 163

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ 488
                       + N +                P  L   K+               ++ 
Sbjct: 164 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 223

Query: 489 GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVF 548
            +           +  D+G  ++          L     +        G           
Sbjct: 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR-TLWIWECGITAKGCGDLCRVLRAK 282

Query: 549 PKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFD 608
             L+ + L+ N    +      +         +S             ++     +   F 
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 609 YSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKL----IGKIPTSISELKGLNCL 664
             LQ           + +    G+  + L  + L++  +       +  ++     L  L
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402

Query: 665 NLSGNNLLGHIPSSLG-----NLTVLESLDLSNNNLSGEIPRQLAEL 706
           +LS N L       L         +LE L L +   S E+  +L  L
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 9e-11
 Identities = 58/464 (12%), Positives = 111/464 (23%), Gaps = 37/464 (7%)

Query: 276 LEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLAS 335
           ++ LD+    LS +    ELLP L+   V+ L    L+                      
Sbjct: 4   IQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLT---------------------E 41

Query: 336 CNLKEFLDFLNDQDQLELLDLSANKIPGKIPGWL---LNVTTGNLQFVNLSYNLITGFDR 392
              K+    L     L  L+L +N++       +   L   +  +Q ++L    +TG   
Sbjct: 42  ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 393 GSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDL 452
           G +      L TL    +     L       +   + +     +         S    + 
Sbjct: 102 GVLSSTLRTLPTLQE-LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160

Query: 453 SHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIA 512
             + L                      +             +L   +     D   +   
Sbjct: 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 220

Query: 513 DIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQC 572
            +          L    L                   +   I        G         
Sbjct: 221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 280

Query: 573 WNAIKVANKSQLKYMQDQ--PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNY 630
                         + D+         + P               A   +  +  +  N 
Sbjct: 281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340

Query: 631 GKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNL----LGHIPSSLGNLTVLE 686
             +   ++   L +  +             L  L L+  ++       + ++L     L 
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 687 SLDLSNNNLSGEIPRQLAE-----LTSLAVFDVSDNNLTGQIPQ 725
            LDLSNN L      QL E        L    + D   + ++  
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA--- 496
                + LRVL L+   +S      L+ +       +L+ +DLS+N L       L    
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAAT--LLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 497 --NCTMLEFLDLGNNQIADIFPSWLGTL----PELKVL 528
                +LE L L +   ++     L  L    P L+V+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 15/149 (10%), Positives = 37/149 (24%), Gaps = 9/149 (6%)

Query: 446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLANCTML 501
            ++ LD+    LS         +++       +++ L    L       I  +L     L
Sbjct: 3   DIQSLDIQCEELSD-----ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
             L+L +N++ D+    +    +     +Q               V         +    
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590
                         +          ++  
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKL 146

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 204 LTYINFDLNQLT-GPIPNWLANLNRLTILSLKSNQLRG----YLPSQIGSLTQLTALDLS 258
           +  ++    +L+       L  L +  ++ L    L       + S +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGN 289
            N+        + +  +     +   +L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 219 PNWLANLNRLTILSLKSNQLRG----YLPSQIGSLTQLTALDLSCNQFQGPVPSSISE-- 272
                  + L +L L    +       L + + +   L  LDLS N         + E  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 ---LKRLEYLDLHSNNLSGNV--YIEELLPKLKSLIVL 305
                 LE L L+    S  +   ++ L     SL V+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 13/110 (11%), Positives = 34/110 (30%), Gaps = 18/110 (16%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435
           ++Q +++    ++      ++ L      + L    L                       
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-----------------TEARCK 45

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHN 485
            ++  L    +L  L+L  N L  V   C+    +   +  ++ + L + 
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNC 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 8e-10
 Identities = 40/300 (13%), Positives = 88/300 (29%), Gaps = 45/300 (15%)

Query: 427 LVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNL 486
           L   NL        L     +       +F+   L +  S  +       ++ +DLS+++
Sbjct: 7   LTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAEHFSPFR-------VQHMDLSNSV 57

Query: 487 LQGR-IPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG 545
           ++   +   L+ C+ L+ L L   +++D   + L     L  L L       E       
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 546 FVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAY 605
               +L  ++LS      +   +                                     
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAH-------------------------------V 146

Query: 606 IFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLN 665
               +   +  Y   +    +     +  N +   +  +  L         +L  L  L+
Sbjct: 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 206

Query: 666 LSG-NNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIP 724
           LS   +++      LG +  L++L +      G +      L  L    ++ ++ T    
Sbjct: 207 LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE-IP 700
           L+   L   +   +    G+       + +   +         ++ +DLSN+ +    + 
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVSTLH 64

Query: 701 RQLAELTSLAVFDVSDNNLTGQIPQ 725
             L++ + L    +    L+  I  
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 28/255 (10%)

Query: 88  HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSF------- 140
            VI      S +   +    S F ++H+    L+++    S +   +   S         
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 141 ----SGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPS 196
                  V +L   + L  L LS  +  S  +      +             +   +   
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 197 WLMNLTQLTYINFDLNQL------TGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLT 250
             +     T    +L+        +          N + +    S  L+     +   L 
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 251 QLTALDLS-CNQFQGPVPSSISELKRLEYLDLHSNNLSGNV-YIEELLPKLKSLIVLFLS 308
            L  L LS C          + E+  L+ L +      G +  ++E LP L+      ++
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ------IN 254

Query: 309 ANNLSLITRNTVNIR 323
            ++ + I R T+  +
Sbjct: 255 CSHFTTIARPTIGNK 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 51/301 (16%), Positives = 88/301 (29%), Gaps = 28/301 (9%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C              L  V P  +            + I L  N +      S   C  L
Sbjct: 8   CYNEPKVTTSCPQQGLQAV-PVGIP--------AASQRIFLHGNRISHVPAASFRACRNL 58

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
             L L +N +A I  +    L  L+ L L  N     + +P T     +L  + L     
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGL 117

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM 621
               P  +                        +L  +   +    F       + +    
Sbjct: 118 QELGPGLFRGLAAL----------QYLYLQDNALQALPDDT----FRDLGNLTHLFLHGN 163

Query: 622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGN 681
               +     +  + L  ++L  N++    P +  +L  L  L L  NNL      +L  
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 682 LTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIP---QGKQFNTFENSSFE 738
           L  L+ L L++N    +  R       L  F  S + +   +P    G+       +  +
Sbjct: 224 LRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

Query: 739 G 739
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 6/167 (3%)

Query: 147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTY 206
              L +L  L L +                   L +L L +  L         +L  LT+
Sbjct: 101 FHGLGRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 207 INFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV 266
           +    N+++         L+ L  L L  N++    P     L +L  L L  N      
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 267 PSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS 313
             +++ L+ L+YL L+ N    +     L   L+       S++ + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR---GSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 50/315 (15%), Positives = 82/315 (26%), Gaps = 65/315 (20%)

Query: 403 VTLDLRSNKLQG-PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVL 461
           VT       LQ  P+ IP  S   +L   N ++   A       +L +L L  N L+ + 
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 462 PQCLSN-------------------SKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLE 502
               +                       F     L  + L    LQ   P        L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 503 FLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           +L L +N +  +       L  L  L L  NR          G     L  + L  NR +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG--LHSLDRLLLHQNRVA 190

Query: 563 GKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMV 622
              P  +                                          + +  Y     
Sbjct: 191 HVHPHAFRDLG--------------------------------------RLMTLYLFANN 212

Query: 623 NKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL 682
              +          L  + L++N  +     +      L     S + +   +P  L   
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 683 TVLESLDLSNNNLSG 697
            +     L+ N+L G
Sbjct: 272 DL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 56/265 (21%), Positives = 78/265 (29%), Gaps = 14/265 (5%)

Query: 151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFD 210
              + + L  N  S   +ASF      T L   +     +     + L           D
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL--LEQLDLSD 89

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSI 270
             QL    P     L RL  L L    L+   P     L  L  L L  N  Q     + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 271 SELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVF 330
            +L  L +L LH N +S     E     L SL  L L  N ++ +  +     L      
Sbjct: 150 RDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTL 206

Query: 331 LGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIP-GWLLNVTTGNLQFVNLSYNLITG 389
              A+       + L     L+ L L+ N          L       LQ    S + +  
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----WLQKFRGSSSEVPC 262

Query: 390 FDRGSVVLLWTDLVTLDLRSNKLQG 414
                            L +N LQG
Sbjct: 263 SLPQR----LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-08
 Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 9/224 (4%)

Query: 351 LELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSN 410
            + + L  N+I               + +++ +          + + L   L   D    
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 411 KLQGPLPIPPESTIHYL-VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSK 469
           +   P        +H L +    L          L +L+ L L  N L  +         
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------ 147

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLM 529
            F++  NL  + L  N +     R+      L+ L L  N++A + P     L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 530 LQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCW 573
           L  N       E         L+ + L+ N +     ++    W
Sbjct: 208 LFANNLSALPTEALAP--LRALQYLRLNDNPWVCDCRARPLWAW 249

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 49/301 (16%), Positives = 85/301 (28%), Gaps = 53/301 (17%)

Query: 376 NLQFVNLSYNLITGFDRGS---VVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNL 432
             Q + L  N I+     S      L    +  ++ +                 L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 433 LTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIP 492
           L          L  L  L L                 +F+    L+ + L  N LQ    
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 493 RSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLR 552
            +  +   L  L L  N+I+ +       L  L  L+L  NR       P       +L 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLM 204

Query: 553 IIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQ 612
            + L  N                      S L      P ++L Y+  + + ++ D   +
Sbjct: 205 TLYLFANNL--------------------SALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 613 YIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLL 672
                               +  +L     S++++   +P     L G +   L+ N+L 
Sbjct: 245 P-------------------LWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQ 282

Query: 673 G 673
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 47/272 (17%), Positives = 84/272 (30%), Gaps = 20/272 (7%)

Query: 242 LPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKS 301
           +P  I + +Q   + L  N+      +S    + L  L LHSN L+              
Sbjct: 26  VPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-TGLALL 82

Query: 302 LIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKI 361
             +       L  +   T +   +   + L       +           L+ L L  N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 362 PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLP---I 418
                    ++   NL  + L  N I+     +   L   L  L L  N++    P    
Sbjct: 142 QALPDDTFRDLG--NLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFR 198

Query: 419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLK 478
                +   +  N L+      L  L +L+ L L+ N        C   ++       L+
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-----VCDCRARPLWA--WLQ 251

Query: 479 MIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQ 510
               S + +   +P+ LA     +   L  N 
Sbjct: 252 KFRGSSSEVPCSLPQRLAG---RDLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 14/215 (6%)

Query: 547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
           +    + I L  NR S  +P+  F+    + +         +          L       
Sbjct: 30  IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 607 FDYSLQYIYAYSIT------------MVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654
            +  L+ +   +                 + +     +    L  + L +N L      +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 655 ISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV 714
             +L  L  L L GN +      +   L  L+ L L  N ++   P    +L  L    +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 715 SDNNLTG-QIPQGKQFNTFENSSFEGNPGLCGKPL 748
             NNL+             +      NP +C    
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 33/190 (17%), Positives = 48/190 (25%), Gaps = 17/190 (8%)

Query: 109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVP----------SLGNLTKLKCLEL 158
              L  L  L L                 +     +           +  +L  L  L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 159 SQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPI 218
             N      S           L  L L    +    P    +L +L  +    N L+   
Sbjct: 161 HGNRI---SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 219 PNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY 278
              LA L  L  L L  N               L     S ++    +P     L   + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDL 273

Query: 279 LDLHSNNLSG 288
             L +N+L G
Sbjct: 274 KRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 56/334 (16%), Positives = 97/334 (29%), Gaps = 23/334 (6%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435
               + L+   ++     S+  L   L +L    N L     +P       + +NNL   
Sbjct: 39  QAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA- 92

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
                L  L     +  +       L        I  +  +LK +      L+     + 
Sbjct: 93  --LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIID 555
               + E  +L          + L  LP+L + +      +  + E       P L  I 
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 556 LSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIY 615
             +N                       +  Y+ D P    +      S  IF    +   
Sbjct: 211 ADNNLLKTLPDLPPSLEAL------NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 616 AYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHI 675
                  +     +   +   L  + +SNNKLI ++P     L+ L        N L  +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEV 319

Query: 676 PSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSL 709
           P    N   L+ L +  N L  E P     +  L
Sbjct: 320 PELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 58/307 (18%), Positives = 100/307 (32%), Gaps = 26/307 (8%)

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATN-LKMIDLSHNL 486
           ++N  L+  L     +L     L  S N L+  LP+   + K      N LK +     L
Sbjct: 45  LNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 99

Query: 487 LQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546
           L+     +     + E  +    +I D+  + L  LP+L   +      + ++ E     
Sbjct: 100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 159

Query: 547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
             P L  I   +N                       +L  +Q+ P  +  Y   +    +
Sbjct: 160 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 219

Query: 607 F------------DYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTS 654
                        D  L  +     ++    +  N     + L   +   N    +I + 
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 655 ISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDV 714
                 L  LN+S N L+  +P+    L   E L  S N+L+ E+P     L  L    V
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL---HV 331

Query: 715 SDNNLTG 721
             N L  
Sbjct: 332 EYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 15/104 (14%)

Query: 424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLS 483
              L   N  + ++        SL  L++S+N L   LP              L+ +  S
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---------RLERLIAS 312

Query: 484 HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKV 527
            N L   +P    N   L+ L +  N + +  P    ++ +L++
Sbjct: 313 FNHLA-EVPELPQN---LKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 43/298 (14%), Positives = 81/298 (27%), Gaps = 34/298 (11%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
           C       L+L++  LS  LP+            +L+ +  S N L   +P    +   L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELP---------PHLESLVASCNSLT-ELPELPQSLKSL 83

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
              +     ++D+ P           L       +    +          ++ DL  +  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI--------------- 606
                +   +    ++        Y  +   + L  +  S  + +               
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 607 ----FDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLN 662
                 Y+   +      +      +N           +  +   +       S L  L 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 663 CLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT 720
                 N     I S       LE L++SNN L  E+P     L  L     S N+L 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 317

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 206 YINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP 265
              + LN  +  I +       L  L++ +N+L   LP+    L +L     S N     
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-- 317

Query: 266 VPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSL 302
                   + L+ L +  N L       ++   ++ L
Sbjct: 318 --EVPELPQNLKQLHVEYNPLRE---FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 49/315 (15%), Positives = 87/315 (27%), Gaps = 21/315 (6%)

Query: 226 NRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNN 285
            +   L L +  L   LP        L +L  SCN     +P     LK    L + +NN
Sbjct: 38  RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPELPQSLKS---LLVDNNN 89

Query: 286 LSGNVYIEELLP-KLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDF 344
           L     +  LL     S   L       +      +++   +      L           
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 345 LNDQDQLELLDLSANKI----PGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWT 400
              ++  EL +L            +        +        +        +    L   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 401 DLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
                 L++     P         +YL     L   L     + N    L      L  +
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 461 LPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520
                    +     +L+ +++S+N L   +P        LE L    N +A++      
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEVPEL--- 322

Query: 521 TLPELKVLMLQFNRF 535
               LK L +++N  
Sbjct: 323 -PQNLKQLHVEYNPL 336

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 29/221 (13%), Positives = 66/221 (29%), Gaps = 10/221 (4%)

Query: 472 KNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQ 531
               N   I    + +   +  + A+   +  L      +  I    +  L  L  L L+
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 532 FNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQP 591
            N+       P           +  +  +    +          +     + +  +    
Sbjct: 72  DNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 592 GQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKI 651
              + Y+  +    I   +      Y      +  ++      + LT +   +NK+    
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189

Query: 652 PTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSN 692
           P  ++ L  L  ++L  N +    P  L N + L  + L+N
Sbjct: 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 10/213 (4%)

Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSG 563
           +  G + + D        L  +  L          +   +       L  ++L  N+ + 
Sbjct: 24  IAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLELKDNQITD 77

Query: 564 KLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVN 623
             P K       ++++             QS+  +  +S+       L  +    +  ++
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 624 KGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLT 683
                N   ++       LS         T ++ L  L  L    N +    P  L +L 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 684 VLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD 716
            L  + L NN +S   P  LA  ++L +  +++
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 27/237 (11%)

Query: 248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL 307
           +L     +    +     V  + ++L  +  L      ++      E +  L +LI L L
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGLEL 70

Query: 308 SANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANKIPGKIPG 367
             N    IT       L          +              +   L  +       + G
Sbjct: 71  KDNQ---ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 368 WLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYL 427
                         L  +L    +   +  L          +                  
Sbjct: 128 LS--------NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 428 VSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSH 484
             +N ++      L +L +L  + L +N +S V P          N +NL ++ L++
Sbjct: 180 ADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--------LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 37/231 (16%)

Query: 89  VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLG 148
            IK+    S    ++  + +   L  +  LS                        +  + 
Sbjct: 21  AIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVT----------------TIEGVQ 60

Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYIN 208
            L  L  LEL  N  +            + ELS   L N++ I    S        T I 
Sbjct: 61  YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 209 FD-----------LNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDL 257
                        L      I N         +  L     +    + + +L++LT L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 258 SCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLS 308
             N+     P  ++ L  L  + L +N +S        L    +L ++ L+
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISD----VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 463 QCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL 522
             +S+     N + L  +    N +    P  LA+   L  + L NNQI+D+ P  L   
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 523 PELKVLML 530
             L ++ L
Sbjct: 217 SNLFIVTL 224

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 44/254 (17%), Positives = 73/254 (28%), Gaps = 53/254 (20%)

Query: 442 CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML 501
             + S   ++     L+  LP  L          +  ++ LS NLL      +L   T L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--------KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF 561
             L+L   ++  +          L VL       +     P  G   P L ++D+S NR 
Sbjct: 58  TQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITM 621
           +  LP    +    ++       +     PG           +                 
Sbjct: 113 TS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL---------------- 155

Query: 622 VNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGN 681
                                +NN L       ++ L+ L+ L L  N+L   IP     
Sbjct: 156 ---------------------ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 682 LTVLESLDLSNNNL 695
             +L    L  N  
Sbjct: 194 SHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 39/249 (15%), Positives = 62/249 (24%), Gaps = 47/249 (18%)

Query: 471 FKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLML 530
                +   ++     L   +P  L        L L  N +     + L     L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 531 QFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQ 590
                     +       P L  +DLSHN+                              
Sbjct: 63  DRAELT----KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA----------------- 101

Query: 591 PGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGK 650
                                              + +   +    L  + L  N+L   
Sbjct: 102 ----------------------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 651 IPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLA 710
            P  ++    L  L+L+ NNL       L  L  L++L L  N+L   IP+       L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 711 VFDVSDNNL 719
              +  N  
Sbjct: 199 FAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 50/206 (24%), Positives = 76/206 (36%), Gaps = 13/206 (6%)

Query: 376 NLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTG 435
           +   ++LS NL+  F   +++   T L  L+L   +L           +  L  ++    
Sbjct: 32  DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 436 KLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSL 495
            L      L +L VLD+S N L+ +           +    L+ + L  N L+   P  L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGA------LRGLGELQELYLKGNELKTLPPGLL 144

Query: 496 ANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIID 555
                LE L L NN + ++    L  L  L  L+LQ N        P   F    L    
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAF 201

Query: 556 LSHNRFSGKLPSKYFQCW---NAIKV 578
           L  N +       YF+ W   NA  V
Sbjct: 202 LHGNPWLCNCEILYFRRWLQDNAENV 227

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 12/220 (5%)

Query: 113 RHLEWLSLADNNFNYSKIPSEIMNLSSF------SGQVPSLGNLTKLKCLELSQNNFSSP 166
           +    L L++N    +   + +M  +          ++  L     L  L  + +   + 
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG-TLDLSHNQ 88

Query: 167 HSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN 226
             +          L+ L ++   L       L  L +L  +    N+L    P  L    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 227 RLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNL 286
           +L  LSL +N L       +  L  L  L L  N     +P        L +  LH N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 287 SGNVYIEEL---LPKLKSLIVLFLSANNLSLITRNTVNIR 323
             N  I      L      + ++    ++  +T N  +++
Sbjct: 208 LCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQ 247

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 654 SISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD 713
            +S++     +N    NL   +P  L        L LS N L       L   T L   +
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 714 VSDNN 718
           +    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 34/232 (14%)

Query: 224 NLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            +     ++     L   LP  +   T +  L LS N       +++    RL  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNL-D 63

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
                 + ++  LP L +L +      +L L+ +    + + +               L 
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-----RLTSLPLG 118

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
            L    +L+ L L  N++    PG L       L+ ++L+ N +T    G +  L  +L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTP--KLEKLSLANNNLTELPAGLLNGL-ENLD 175

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHN 455
           TL L+ N L                        +       + L    L  N
Sbjct: 176 TLLLQENSLY----------------------TIPKGFFGSHLLPFAFLHGN 205

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 46/340 (13%), Positives = 103/340 (30%), Gaps = 33/340 (9%)

Query: 228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGP----VPSSISELKRLEYLDLHS 283
           L + ++ +   +  + + +     +  + LS N         +  +I+  K LE  +   
Sbjct: 10  LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 284 NNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD 343
                    +E+   L+ L+   L    L  +  +        +   +   S +      
Sbjct: 69  IFT--GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLV 403
           +L++            +   ++           L+ +    N +           +    
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 404 TLDLRSNKLQGPLPIPPESTIHYLVSNNLL---------------TGKLAPWLCNLNSLR 448
            L        G  P   E  +   ++                   +  LA  L +  +LR
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 449 VLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLA-----NCTMLEF 503
            L L+   LS      + ++        L+ + L +N ++    R+L          L F
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPD 543
           L+L  N+ ++     +  + E+        R  GE+ E D
Sbjct: 307 LELNGNRFSEE-DDVVDEIREVFST-----RGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 36/311 (11%), Positives = 89/311 (28%), Gaps = 39/311 (12%)

Query: 437 LAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQ-------- 488
           +   L   +S++ + LS N +     + LS  +   +  +L++ + S             
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLS--ENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 489 --GRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGF 546
               + ++L  C  L  + L +N         L         +      +  +G      
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 547 VFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYI 606
           +   L+ + ++    +           N ++  +  +               +  +    
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 607 FDYSLQYIYA--------------YSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIP 652
                  +                 + T +         K    L  + L++  L  +  
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 653 TSISE------LKGLNCLNLSGNNLLGHIPSSL-----GNLTVLESLDLSNNNLS--GEI 699
            ++ +        GL  L L  N +      +L       +  L  L+L+ N  S   ++
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320

Query: 700 PRQLAELTSLA 710
             ++ E+ S  
Sbjct: 321 VDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 33/328 (10%), Positives = 76/328 (23%), Gaps = 64/328 (19%)

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIAD----IFPSWLGTLPELKVLMLQ 531
           +LK+  ++    +  +   L     ++ + L  N I           + +  +L++    
Sbjct: 9   SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 532 FNRFHGEIGE--------PDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ 583
                    E               PKL  + LS N F            +         
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIE---------------- 627
           L      P              +   +       SI      +E                
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 628 ------------------------MNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC 663
                                       ++           +     +  ++     L  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 664 LNLSGNNLLGHIPSSLGN------LTVLESLDLSNNNLSGEIPRQLAE-----LTSLAVF 712
           L L+   L     +++ +         L++L L  N +  +  R L       +  L   
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 713 DVSDNNLTGQIPQGKQFNTFENSSFEGN 740
           +++ N  + +     +     ++   G 
Sbjct: 308 ELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 657 ELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGE----IPRQLAELTSLAVF 712
           E K L  L+         + + L     ++ + LS N +  E    +   +A    L + 
Sbjct: 6   EGKSLK-LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 713 DVSDNNLTGQIPQGKQFNTFENSSFEGNPGLC 744
           + SD        +  +       +    P L 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 8/199 (4%)

Query: 494 SLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRI 553
           S          +L    + D        L  +  ++   +      G        P +  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY----LPNVTK 72

Query: 554 IDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQY 613
           + L+ N+ +   P    +    + +           +  + L  +    +       L +
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 614 IYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG 673
           +       +      +   +S       LS           ++ L  L  L LS N++  
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192

Query: 674 HIPSSLGNLTVLESLDLSN 692
               +L  L  L+ L+L +
Sbjct: 193 --LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 41/210 (19%)

Query: 89  VIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLG 148
            IK NL       S+  + +   L  ++ +   +++                   V  + 
Sbjct: 26  TIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIK----------------SVQGIQ 65

Query: 149 NLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI---------------NLIGE 193
            L  +  L L+ N  +     +         L    + ++               +    
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 194 FPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLT 253
             + L++L QL  +    N++T         L +L  LSL+ NQ+   +P  +  LT+L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 254 ALDLSCNQFQGPVPSSISELKRLEYLDLHS 283
            L LS N        +++ LK L+ L+L S
Sbjct: 182 NLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 28/254 (11%), Positives = 69/254 (27%), Gaps = 22/254 (8%)

Query: 440 WLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCT 499
            +C+  S RV     + ++ + P  L          N   +      L+     + +   
Sbjct: 4   RICHC-SNRVFLCQESKVTEI-PSDLP--------RNAIELRFVLTKLRVIQKGAFSGFG 53

Query: 500 MLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN 559
            LE +++  N + ++  + + +       +      +     P+     P L+ + +S+ 
Sbjct: 54  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 113

Query: 560 RFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSI 619
                           + +  +  +     +                   S + +  +  
Sbjct: 114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN------------SFVGLSFESVILWLN 161

Query: 620 TMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSL 679
               + I       +      +  NN L            G   L++S   +       L
Sbjct: 162 KNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 221

Query: 680 GNLTVLESLDLSNN 693
            NL  L +    N 
Sbjct: 222 ENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 27/245 (11%), Positives = 57/245 (23%), Gaps = 17/245 (6%)

Query: 476 NLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRF 535
           + ++     + +   IP  L        L     ++  I         +L+ + +  N  
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 536 HGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSL 595
              I       +     I     N      P  +                 +Q     + 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP------------NLQYLLISNT 113

Query: 596 NYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSI 655
                     I       +       ++     ++  +S     + L+ N +      + 
Sbjct: 114 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF 173

Query: 656 SELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS 715
           +  +         NNL           +    LD+S   +       L  L  L      
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 232

Query: 716 DNNLT 720
             NL 
Sbjct: 233 -YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 470 IFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELK 526
           +F  A+   ++D+S   +       L N   L      N          L  LP L+
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN----------LKKLPTLE 242

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 195 PSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTA 254
              L  L  +T+++   N+L    P  LA L  L +L    N L            +L  
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANL--PRLQE 69

Query: 255 LDLSCNQFQG-PVPSSISELKRLEYLDLHSNNLSGN----VYIEELLPKLKSLI 303
           L L  N+ Q       +    RL  L+L  N+L         + E+LP + S++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 7e-06
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 12/117 (10%)

Query: 448 RVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG 507
           RVL L+H  L+ +           +    +  +DLSHN L+   P +LA    LE L   
Sbjct: 1   RVLHLAHKDLTVLCH--------LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQAS 51

Query: 508 NNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGK 564
           +N + ++       LP L+ L+L  NR              P+L +++L  N    +
Sbjct: 52  DNALENVDGVA--NLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 21/120 (17%)

Query: 429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKI---------------FKN 473
           ++  LT      L  L  +  LDLSHN L  + P   +   +                 N
Sbjct: 6   AHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 474 ATNLKMIDLSHNLLQG-RIPRSLANCTMLEFLDLGNNQIADI---FPSWLGTLPELKVLM 529
              L+ + L +N LQ     + L +C  L  L+L  N +             LP +  ++
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 354 LDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQ 413
           L L+   +   +   L  +    +  ++LS+N +         L   +++     + +  
Sbjct: 3   LHLAHKDL--TVLCHLEQLL--LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 414 GPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
             +   P      L +N L        L +   L +L+L  N L   
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 144 VPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQ 203
           +  L  L  +  L+LS N   +    + + +     L     A  N+ G      +    
Sbjct: 13  LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRL---- 67

Query: 204 LTYINFDLNQLTG-PIPNWLANLNRLTILSLKSNQL------RGYLPSQIGSLTQL 252
              +    N+L        L +  RL +L+L+ N L      +  L   + S++ +
Sbjct: 68  -QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 26/103 (25%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVL---------------- 685
           L++  L   +   + +L  +  L+LS N L    P+ L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 686 ------ESLDLSNNNL-SGEIPRQLAELTSLAVFDVSDNNLTG 721
                 + L L NN L      + L     L + ++  N+L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 9e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 212 NQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSIS 271
             LT  +   L  L  +T L L  N+LR   P+ + +L  L  L    +         ++
Sbjct: 8   KDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ--ASDNALENVDGVA 62

Query: 272 ELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI 315
            L RL+ L L +N L       + L     L++L L  N+L   
Sbjct: 63  NLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 462 PQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGT 521
            + +  +  + NA   + +DL    +   I    A     + +D  +N+I  +       
Sbjct: 5   AELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPL 61

Query: 522 LPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFS 562
           L  LK L++  NR              P L  + L++N   
Sbjct: 62  LRRLKTLLVNNNRICRIG--EGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPR 701
           L+   LI +     + ++    L+L G  +   I +    L   +++D S+N +      
Sbjct: 3   LTAE-LIEQAAQYTNAVR-DRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 702 QLAELTSLAVFDVSDNNLTGQIPQGKQFNTF 732
               L  L    V++N +        Q    
Sbjct: 60  P--LLRRLKTLLVNNNRICRIGEGLDQALPD 88

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPS-SLGNLTVLESLDLSNNNL 695
            +G+  + +  +      +   + L  L +     L H+    L  L  L +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 696 SGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLS 749
               P        L+  ++S N L     +  Q  + +     GNP  C   L 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 9/138 (6%)

Query: 400 TDLVTLDLRSNKLQG---PLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNF 456
                L    +        LP     T  Y+ +   L       L  L  LR L +  + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 457 LSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFP 516
           L  V P        F     L  ++LS N L+    +++   ++ E +  GN        
Sbjct: 68  LRFVAPDA------FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 517 SWLGTLPELKVLMLQFNR 534
            WL    E  +  +   +
Sbjct: 122 RWLQRWEEEGLGGVPEQK 139

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 33/146 (22%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 401 DLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGV 460
           D     L    L+    +  ++    L   + +   L     N+  L  L+LS+N L   
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR- 79

Query: 461 LPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLG 520
                  S I + A NLK+++LS N L+            LE L L  N ++D F     
Sbjct: 80  ---LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 521 TLPELKVLMLQFNRFHGEIGEPDTGF 546
            +  ++    +  R  G    P   F
Sbjct: 137 YISAIRERFPKLLRLDGHELPPPIAF 162

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 439 PWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR--IPRSLA 496
           P L   N   VL+   +  +       +   I +N   L  ++LS+N L     +   + 
Sbjct: 36  PDLVAQNIDVVLNRRSSMAA-------TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 88

Query: 497 NCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTG-----FVFPKL 551
               L+ L+L  N++            +L+ L L  N       +  T        FPKL
Sbjct: 89  KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL 148

Query: 552 RIID 555
             +D
Sbjct: 149 LRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 211 LNQLTGPIPNWLANLNRLTILSLKSNQLRGY--LPSQIGSLTQLTALDLSCNQFQGPVPS 268
            + +   +     N+  L  L+L +N+L     + S +     L  L+LS N+ +     
Sbjct: 50  RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 109

Query: 269 SISELKRLEYLDLHSNNLSGNV--------YIEELLPKLKSL 302
              +  +LE L L  N+LS            I E  PKL  L
Sbjct: 110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 8/136 (5%)

Query: 469 KIFKNATNLKMIDLSHNLLQGRIPR------SLANCTMLEFLDLGNNQIADIFPSWLGTL 522
           +IF+   ++   +     L G IP       +L+     + L L  N I  I  S L  +
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGM 69

Query: 523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKS 582
             L++L L  N                +L I        SG       +          +
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129

Query: 583 QLKYMQDQPGQSLNYI 598
             +  +      L  +
Sbjct: 130 WGEIDKLAALDKLEDL 145

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 668 GNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGK 727
            N +          L  L++L+L +N +S  +P     L SL   +++ N          
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

Query: 728 QFNTFENSSFEGNPGLCGKPLS-RNCEISESSQKE 761
                   S  G    CG P   R+ +I +    E
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	821
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-39  Score=343.93  Aligned_cols=249  Identities=29%  Similarity=0.458  Sum_probs=183.2

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCccchhcccccccCCCCCCCCCCCCcc--ccceeeCCCC--CCEEEEEcCCCCCcccccC
Q 041782           30 LCHAGERSALLQFKESLTINKEASAHRSAHAKFASWNLEEEDRDCCS--WDGVKCNEDT--GHVIKLNLTSSCIYGSINS  105 (821)
Q Consensus        30 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g~~~~  105 (821)
                      -|.++||+||++||+++.++.          .+++|..   ++|||.  |+||+|+..+  +||++|+|+++++.|..+-
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~----------~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l   68 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC----------cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCC
Confidence            499999999999999998653          6899986   689994  9999998754  4899999999999885432


Q ss_pred             CcccccCCCCCEEeCCC-CCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEe
Q 041782          106 SSSLFHLRHLEWLSLAD-NNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLA  184 (821)
Q Consensus       106 ~~~l~~l~~L~~L~Ls~-n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~  184 (821)
                      ++++++|++|++|+|++ |++.+ .+|+.             ++++++|++|+|++|++.+..+   ..+..+..|++++
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g-~iP~~-------------i~~L~~L~~L~Ls~N~l~~~~~---~~~~~~~~L~~l~  131 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVG-PIPPA-------------IAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLD  131 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEES-CCCGG-------------GGGCTTCSEEEEEEECCEEECC---GGGGGCTTCCEEE
T ss_pred             ChHHhcCcccccccccccccccc-ccccc-------------cccccccchhhhcccccccccc---ccccchhhhcccc
Confidence            33888888888888886 66753 46666             7778888888888888887777   6667777778888


Q ss_pred             cCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCC-CEEEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          185 LANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRL-TILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       185 L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      +++|.+.+.+|..+.++++|+++++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            88777777777777777777777777777777777777777665 677777777777777666665443 5777777776


Q ss_pred             CCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCccc
Q 041782          264 GPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNL  312 (821)
Q Consensus       264 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l  312 (821)
                      +.+|..+..+++++.+++++|.+.+.++.   +..+++|+.|++++|++
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~---~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccc---cccccccccccCccCee
Confidence            66676666777777777777666554322   33344444444444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=6.3e-31  Score=276.53  Aligned_cols=244  Identities=32%  Similarity=0.505  Sum_probs=218.5

Q ss_pred             CCchhhhCCCCCcEEEcCC-CcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcC
Q 041782          436 KLAPWLCNLNSLRVLDLSH-NFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       436 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  514 (821)
                      .+|..++++++|++|+|++ |+++|.+|..++      ++++|++|++++|++.+..+..+..+..|+.+++++|++.+.
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~------~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIA------KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGG------GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CCChHHhcCccccccccccccccccccccccc------cccccchhhhccccccccccccccchhhhccccccccccccc
Confidence            4788999999999999997 899999998764      489999999999999999999999999999999999999999


Q ss_pred             CchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCC-cEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCC
Q 041782          515 FPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKL-RIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQ  593 (821)
Q Consensus       515 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~  593 (821)
                      +|..+..++.|+++++++|.+.+.+|...  ..+.++ +.+++++|+++|..|.. +..                     
T Consensus       141 ~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-~~~---------------------  196 (313)
T d1ogqa_         141 LPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FAN---------------------  196 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GGG---------------------
T ss_pred             CchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-ccc---------------------
Confidence            99999999999999999999999988766  445554 89999999999877753 111                     


Q ss_pred             CcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCc
Q 041782          594 SLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLG  673 (821)
Q Consensus       594 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~  673 (821)
                                                              . ....++++++...+.+|..++.+++++.|++++|.+++
T Consensus       197 ----------------------------------------l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         197 ----------------------------------------L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             ----------------------------------------C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             ----------------------------------------c-cccccccccccccccccccccccccccccccccccccc
Confidence                                                    0 14468999999999999999999999999999999998


Q ss_pred             chhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 041782          674 HIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIPQGKQFNTFENSSFEGNPGLCGKPLSRNC  752 (821)
Q Consensus       674 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c  752 (821)
                      .+| .++.+++|+.|+|++|+++|.+|..|.++++|++|||++|+|+|.+|+...+.+++..++.||+.+||.|+. .|
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            776 588999999999999999999999999999999999999999999999888889999999999999998874 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.3e-26  Score=251.05  Aligned_cols=356  Identities=28%  Similarity=0.314  Sum_probs=226.1

Q ss_pred             ecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCC
Q 041782          184 ALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       184 ~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      .++.+.+++.+.  ...+.+|++|+++++.|+. + +.+..+++|++|++++|++++. | .++++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc
Confidence            344444444433  2355677777777777763 2 3566777777777777777743 2 3677777777777777776


Q ss_pred             CCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhh
Q 041782          264 GPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLD  343 (821)
Q Consensus       264 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  343 (821)
                      +. + .++++++|+.|+++++.+++...    ......+.......|.+.......                        
T Consensus       102 ~i-~-~l~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~------------------------  151 (384)
T d2omza2         102 DI-T-PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALS------------------------  151 (384)
T ss_dssp             CC-G-GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGT------------------------
T ss_pred             cc-c-ccccccccccccccccccccccc----cccccccccccccccccccccccc------------------------
Confidence            43 2 26666777777776666654221    223333444443333332211100                        


Q ss_pred             hhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCccc
Q 041782          344 FLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPEST  423 (821)
Q Consensus       344 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  423 (821)
                                               ....  ...............      ..............|..           
T Consensus       152 -------------------------~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----------  187 (384)
T d2omza2         152 -------------------------GLTS--LQQLSFGNQVTDLKP------LANLTTLERLDISSNKV-----------  187 (384)
T ss_dssp             -------------------------TCTT--CSEEEEEESCCCCGG------GTTCTTCCEEECCSSCC-----------
T ss_pred             -------------------------cccc--ccccccccccchhhh------hcccccccccccccccc-----------
Confidence                                     0000  011111111111100      00111111222222211           


Q ss_pred             ceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCE
Q 041782          424 IHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEF  503 (821)
Q Consensus       424 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  503 (821)
                                  ........+++++.+++++|.+++..|.        ..+++|++|++++|.+++ + ..+..+++|+.
T Consensus       188 ------------~~~~~~~~l~~~~~l~l~~n~i~~~~~~--------~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  245 (384)
T d2omza2         188 ------------SDISVLAKLTNLESLIATNNQISDITPL--------GILTNLDELSLNGNQLKD-I-GTLASLTNLTD  245 (384)
T ss_dssp             ------------CCCGGGGGCTTCSEEECCSSCCCCCGGG--------GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred             ------------ccccccccccccceeeccCCccCCCCcc--------cccCCCCEEECCCCCCCC-c-chhhcccccch
Confidence                        2234456778888888888888866442        236788899999998874 3 36788899999


Q ss_pred             EeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcccc
Q 041782          504 LDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQ  583 (821)
Q Consensus       504 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~  583 (821)
                      |++++|++++..+  ++.+++|++|++++|++.+..+    ...++.++.+++++|.+++ ++.  +.            
T Consensus       246 L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~-~~~--~~------------  304 (384)
T d2omza2         246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLED-ISP--IS------------  304 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSC-CGG--GG------------
T ss_pred             hccccCccCCCCc--ccccccCCEeeccCcccCCCCc----ccccccccccccccccccc-ccc--cc------------
Confidence            9999999887643  7788999999999998875432    2457888999999998864 221  11            


Q ss_pred             chhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCE
Q 041782          584 LKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNC  663 (821)
Q Consensus       584 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~  663 (821)
                                                                       .++.++.|++++|++++..|  +..+++|++
T Consensus       305 -------------------------------------------------~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~  333 (384)
T d2omza2         305 -------------------------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQR  333 (384)
T ss_dssp             -------------------------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             -------------------------------------------------hhcccCeEECCCCCCCCCcc--cccCCCCCE
Confidence                                                             12347889999999986543  888999999


Q ss_pred             EeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccC
Q 041782          664 LNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDN  717 (821)
Q Consensus       664 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  717 (821)
                      |++++|++++ +| .|+++++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       334 L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999984 45 58999999999999999997765  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-25  Score=243.71  Aligned_cols=344  Identities=25%  Similarity=0.263  Sum_probs=181.6

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                      ...+.+|++|+++++.++.  +. +             +..+++|++|+|++|++++..     .++++++|++|++++|
T Consensus        40 ~~~l~~l~~L~l~~~~I~~--l~-g-------------l~~L~nL~~L~Ls~N~l~~l~-----~l~~L~~L~~L~L~~n   98 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKS--ID-G-------------VEYLNNLTQINFSNNQLTDIT-----PLKNLTKLVDILMNNN   98 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCC--CT-T-------------GGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSS
T ss_pred             HHHhCCCCEEECCCCCCCC--cc-c-------------cccCCCCCEEeCcCCcCCCCc-----cccCCccccccccccc
Confidence            3456677777777776642  21 2             566777777777777777643     2566677777777777


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS  268 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  268 (821)
                      .+.+..  .++++++|+.|+++++.+++..+  ......+..+....|.+....+................     ....
T Consensus        99 ~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~  169 (384)
T d2omza2          99 QIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLK  169 (384)
T ss_dssp             CCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCG
T ss_pred             cccccc--ccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhh
Confidence            665432  26666777777776666664322  23445556666655555433222211111111111111     1112


Q ss_pred             cccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCCchhhhhhcCC
Q 041782          269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQ  348 (821)
Q Consensus       269 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l  348 (821)
                      .+...+.........|.....    .....+++++.+++++|.++.+.+                           ....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~l~~n~i~~~~~---------------------------~~~~  218 (384)
T d2omza2         170 PLANLTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITP---------------------------LGIL  218 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGC
T ss_pred             hhccccccccccccccccccc----cccccccccceeeccCCccCCCCc---------------------------cccc
Confidence            233333334444444433211    224555666666666666554432                           2233


Q ss_pred             CccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCCCCcccceeec
Q 041782          349 DQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLV  428 (821)
Q Consensus       349 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l  428 (821)
                      ++|+.|++++|.+++.  ..+..+  ++|+.+++++|.+++..+   +..+++|++|+++++++.+..            
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l--~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~~~l~~~~------------  279 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASL--TNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS------------  279 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGC--TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCG------------
T ss_pred             CCCCEEECCCCCCCCc--chhhcc--cccchhccccCccCCCCc---ccccccCCEeeccCcccCCCC------------
Confidence            4455555555554431  233334  455555555555554432   334456666666666554211            


Q ss_pred             cCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCC
Q 041782          429 SNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGN  508 (821)
Q Consensus       429 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  508 (821)
                                 .+..++.++.++++.|.+.+.        ..+..++++++|++++|++++..  .+..+++|++|++++
T Consensus       280 -----------~~~~~~~l~~l~~~~n~l~~~--------~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~  338 (384)
T d2omza2         280 -----------PLAGLTALTNLELNENQLEDI--------SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             -----------GGTTCTTCSEEECCSSCCSCC--------GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCS
T ss_pred             -----------ccccccccccccccccccccc--------cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCC
Confidence                       134455566666666665532        11333566666666666666432  256666666666666


Q ss_pred             CcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCC
Q 041782          509 NQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHN  559 (821)
Q Consensus       509 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  559 (821)
                      |++++. + .++++++|++|++++|++++..|  +  ..+++|+.|+|++|
T Consensus       339 n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l--~~l~~L~~L~L~~N  383 (384)
T d2omza2         339 NKVSDV-S-SLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--G--TTCTTCSEEECCCE
T ss_pred             CCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--h--ccCCCCCEeeCCCC
Confidence            666653 2 46666667777776666665433  2  44667777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.6e-23  Score=214.44  Aligned_cols=253  Identities=23%  Similarity=0.246  Sum_probs=118.9

Q ss_pred             CCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 041782          179 ELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLS  258 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  258 (821)
                      ++++|++++|++....+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++. +|..+  ...++.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhcc
Confidence            44455555554433222345555555555555555554445555555555555555555552 33222  2345555555


Q ss_pred             CccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceeccccchhccCCCeeEEecCCCCC
Q 041782          259 CNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLITRNTVNIRLQNKFVFLGLASCNL  338 (821)
Q Consensus       259 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~~~l  338 (821)
                      +|.+.+..+..+.....++.++...|...........+..+++|+.+++++|.++.++.                     
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---------------------  167 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---------------------  167 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---------------------
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCc---------------------
Confidence            55555443334444444555555444332211111234444555555555544433221                     


Q ss_pred             chhhhhhcCCCccceEecccCCCCCCCCcchhccCCCCeeEEEcCCCCCCCCCCCccccccCCccEEEeccCcccCcCCC
Q 041782          339 KEFLDFLNDQDQLELLDLSANKIPGKIPGWLLNVTTGNLQFVNLSYNLITGFDRGSVVLLWTDLVTLDLRSNKLQGPLPI  418 (821)
Q Consensus       339 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  418 (821)
                           .  .+++|+.|++++|...+..+..+..+  +.++.|++++|.+++..+. .+..+++|++|+|++|+++     
T Consensus       168 -----~--~~~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~-----  232 (305)
T d1xkua_         168 -----G--LPPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-----  232 (305)
T ss_dssp             -----S--CCTTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS-----
T ss_pred             -----c--cCCccCEEECCCCcCCCCChhHhhcc--ccccccccccccccccccc-cccccccceeeeccccccc-----
Confidence                 1  12445555555555555545444444  4455555555555544432 2333445555555555443     


Q ss_pred             CCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccc
Q 041782          419 PPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLL  487 (821)
Q Consensus       419 ~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l  487 (821)
                                       .+|..+.++++|++|++++|+|+..-...+.....+....+|+.|+|++|.+
T Consensus       233 -----------------~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         233 -----------------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             -----------------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             -----------------ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence                             2344455566666666666665543333332222233344444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=4.2e-22  Score=207.69  Aligned_cols=224  Identities=27%  Similarity=0.297  Sum_probs=127.1

Q ss_pred             ccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCC
Q 041782          422 STIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTML  501 (821)
Q Consensus       422 ~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  501 (821)
                      .+++|++++|+++...+..|.++++|++|++++|.+....|..      |.++++|++|++++|+++ .+|..+  ...+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~------f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l  102 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA------FAPLVKLERLYLSKNQLK-ELPEKM--PKTL  102 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT------TTTCTTCCEEECCSSCCS-BCCSSC--CTTC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh------hhCCCccCEecccCCccC-cCccch--hhhh
Confidence            3333334444433333345666666666666666666554443      334566666666666666 333322  3456


Q ss_pred             CEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhcc
Q 041782          502 EFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANK  581 (821)
Q Consensus       502 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~  581 (821)
                      +.|++.+|.+.+..+..+.....+..++...|..............+++|+.+++++|.++ .+|...            
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~------------  169 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL------------  169 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC------------
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc------------
Confidence            6666666666666555566666666666666654332222222244566666666666654 333211            


Q ss_pred             ccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCC
Q 041782          582 SQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGL  661 (821)
Q Consensus       582 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L  661 (821)
                                                                          ++.++.|++++|..++..+..|.+++.+
T Consensus       170 ----------------------------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~~~l  197 (305)
T d1xkua_         170 ----------------------------------------------------PPSLTELHLDGNKITKVDAASLKGLNNL  197 (305)
T ss_dssp             ----------------------------------------------------CTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             ----------------------------------------------------CCccCEEECCCCcCCCCChhHhhccccc
Confidence                                                                1235556666666666666666666666


Q ss_pred             CEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCccc
Q 041782          662 NCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLT  720 (821)
Q Consensus       662 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  720 (821)
                      ++|++++|.+++..|..+.++++|++|+|++|+|+ .+|.+|..+++|++|++++|+++
T Consensus       198 ~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            66666666666555666666666666666666665 34556666666666666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-22  Score=207.32  Aligned_cols=209  Identities=25%  Similarity=0.254  Sum_probs=131.3

Q ss_pred             CCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCC-CCcCCcCCchhhCCCCC
Q 041782          446 SLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLG-NNQIADIFPSWLGTLPE  524 (821)
Q Consensus       446 ~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~  524 (821)
                      .+++|+|++|+|+...+..      |.++++|++|++++|.+.+..+..+..+..++.++.. .|.++...+..++++++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~------f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAAS------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TCSEEECTTSCCCEECTTT------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCEEECcCCcCCCCCHHH------hhccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            4566666666665443322      3445666666666666665555566666666666543 44555555666666666


Q ss_pred             CCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccc
Q 041782          525 LKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSA  604 (821)
Q Consensus       525 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  604 (821)
                      |++|++++|.+....+..+  ...++|+.+++++|.++ .+|...|..                                
T Consensus       107 L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~--------------------------------  151 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD--------------------------------  151 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------------------------------
T ss_pred             CCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhcc--------------------------------
Confidence            7777776666654333333  44566677777777665 344332221                                


Q ss_pred             cccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccC
Q 041782          605 YIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTV  684 (821)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~  684 (821)
                                                   .+.|+.|++++|++++..+..|.++++|+++++++|++++..|..|+++++
T Consensus       152 -----------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         152 -----------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             -----------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence                                         123666777777777666666777777777777777777766777777777


Q ss_pred             CCeEeCCCCcccccCCCCccccCCccEEEcccCcccccCC
Q 041782          685 LESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQIP  724 (821)
Q Consensus       685 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  724 (821)
                      |++||+++|++.+..|..|..+++|++|++++|++.+.++
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            7777777777776666677777777777777777776554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=206.38  Aligned_cols=253  Identities=23%  Similarity=0.244  Sum_probs=204.4

Q ss_pred             cEEEeccCcccCcCCCCCcccceeeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEec
Q 041782          403 VTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDL  482 (821)
Q Consensus       403 ~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~L  482 (821)
                      ..++.+++.++..+...+.++++|++++|.+++..+..|.++++|++|++++|++....+..      +.+++.++.+..
T Consensus        14 ~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~------~~~~~~~~~l~~   87 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA------FTGLALLEQLDL   87 (284)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCEEEC
T ss_pred             eEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc------cccccccccccc
Confidence            45677777777543334678899999999998777778999999999999999998775544      345678888876


Q ss_pred             c-CccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcC
Q 041782          483 S-HNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRF  561 (821)
Q Consensus       483 s-~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  561 (821)
                      . .|.++...+..|.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+  ..+++|+.|++++|++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCcc
Confidence            5 566776778889999999999999999998888888899999999999999986555555  5688999999999999


Q ss_pred             ccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEE
Q 041782          562 SGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGII  641 (821)
Q Consensus       562 ~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  641 (821)
                      + .+|...|..                                                             ++.|+.++
T Consensus       166 ~-~l~~~~f~~-------------------------------------------------------------l~~L~~l~  183 (284)
T d1ozna_         166 S-SVPERAFRG-------------------------------------------------------------LHSLDRLL  183 (284)
T ss_dssp             C-EECTTTTTT-------------------------------------------------------------CTTCCEEE
T ss_pred             c-ccchhhhcc-------------------------------------------------------------ccccchhh
Confidence            7 444443322                                                             33488899


Q ss_pred             cccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccc
Q 041782          642 LSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTG  721 (821)
Q Consensus       642 Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  721 (821)
                      +++|++++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|++.+.-+. -.-...++.+....+++.+
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C  262 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPC  262 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBE
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEe
Confidence            999999999999999999999999999999999999999999999999999999865431 1222346677777788887


Q ss_pred             cCCCC
Q 041782          722 QIPQG  726 (821)
Q Consensus       722 ~iP~~  726 (821)
                      ..|..
T Consensus       263 ~~p~~  267 (284)
T d1ozna_         263 SLPQR  267 (284)
T ss_dssp             EESGG
T ss_pred             CCchH
Confidence            76643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=197.55  Aligned_cols=204  Identities=26%  Similarity=0.295  Sum_probs=168.6

Q ss_pred             CCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCC
Q 041782          443 NLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTL  522 (821)
Q Consensus       443 ~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  522 (821)
                      +...+.+++.+++.++. +|+.+        .+++++|+|++|.+++..+..|.++++|++|+|++|+|+.+ + .++.+
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l--------p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l   76 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL--------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTL   76 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC--------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCC
T ss_pred             ccCCCeEEEccCCCCCe-eCcCc--------CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccc
Confidence            44567778999998884 57654        25789999999999876667899999999999999999875 3 35789


Q ss_pred             CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782          523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS  602 (821)
Q Consensus       523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  602 (821)
                      ++|++|+|++|++.+. +..+  ..+++|+.|++++|.+.+ ++...+..                              
T Consensus        77 ~~L~~L~Ls~N~l~~~-~~~~--~~l~~L~~L~l~~~~~~~-~~~~~~~~------------------------------  122 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSL-PLLG--QTLPALTVLDVSFNRLTS-LPLGALRG------------------------------  122 (266)
T ss_dssp             TTCCEEECCSSCCSSC-CCCT--TTCTTCCEEECCSSCCCC-CCSSTTTT------------------------------
T ss_pred             cccccccccccccccc-cccc--ccccccccccccccccce-eecccccc------------------------------
Confidence            9999999999998854 3333  668999999999999873 33221111                              


Q ss_pred             cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCc
Q 041782          603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNL  682 (821)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l  682 (821)
                                                     +..++.|++++|.+++..+..+..++.|+.|++++|++++..++.|+.+
T Consensus       123 -------------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l  171 (266)
T d1p9ag_         123 -------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL  171 (266)
T ss_dssp             -------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred             -------------------------------ccccccccccccccceeccccccccccchhcccccccccccCccccccc
Confidence                                           3347889999999998778888899999999999999998888899999


Q ss_pred             cCCCeEeCCCCcccccCCCCccccCCccEEEcccCcccccC
Q 041782          683 TVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSDNNLTGQI  723 (821)
Q Consensus       683 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  723 (821)
                      ++|++|||++|+|+ .+|..+..+++|+.|+|++|++.+.+
T Consensus       172 ~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            99999999999999 78888889999999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.5e-21  Score=193.44  Aligned_cols=203  Identities=27%  Similarity=0.286  Sum_probs=173.0

Q ss_pred             CCcccEEeccCccccccCchhhcCCCCCCEEeCCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcE
Q 041782          474 ATNLKMIDLSHNLLQGRIPRSLANCTMLEFLDLGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRI  553 (821)
Q Consensus       474 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  553 (821)
                      ...+.+.+.+++.++ .+|..+.  +++++|+|++|+|+++.+..|..+++|++|+|++|+++. ++. +  ..+++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~--~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-D--GTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-C--SCCTTCCE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-c--cccccccc
Confidence            456777899999998 5776663  689999999999999888899999999999999999984 432 2  46899999


Q ss_pred             EEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccc
Q 041782          554 IDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKV  633 (821)
Q Consensus       554 L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  633 (821)
                      |+|++|++++. +.. +.                                                             .
T Consensus        82 L~Ls~N~l~~~-~~~-~~-------------------------------------------------------------~   98 (266)
T d1p9ag_          82 LDLSHNQLQSL-PLL-GQ-------------------------------------------------------------T   98 (266)
T ss_dssp             EECCSSCCSSC-CCC-TT-------------------------------------------------------------T
T ss_pred             ccccccccccc-ccc-cc-------------------------------------------------------------c
Confidence            99999999742 321 11                                                             1


Q ss_pred             cccccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEE
Q 041782          634 SNFLTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFD  713 (821)
Q Consensus       634 ~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  713 (821)
                      ++.|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.|+.|++++|++++..+..|..+++|++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            34488999999999988888899999999999999999988888899999999999999999998889999999999999


Q ss_pred             cccCcccccCCCC-CCCCCCCCCccCCCCCCCCCC
Q 041782          714 VSDNNLTGQIPQG-KQFNTFENSSFEGNPGLCGKP  747 (821)
Q Consensus       714 ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~~  747 (821)
                      |++|+|+ .+|.+ .....+....+.|||+.|++.
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            9999999 78865 345566778899999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.9e-17  Score=174.31  Aligned_cols=137  Identities=26%  Similarity=0.336  Sum_probs=70.5

Q ss_pred             CCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccc
Q 041782          113 RHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIG  192 (821)
Q Consensus       113 ~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  192 (821)
                      .++++|||++++++  ++|+              +  +++|++|+|++|+|+.. |   .   ...+|++|++++|++. 
T Consensus        38 ~~l~~LdLs~~~L~--~lp~--------------~--~~~L~~L~Ls~N~l~~l-p---~---~~~~L~~L~l~~n~l~-   91 (353)
T d1jl5a_          38 RQAHELELNNLGLS--SLPE--------------L--PPHLESLVASCNSLTEL-P---E---LPQSLKSLLVDNNNLK-   91 (353)
T ss_dssp             HTCSEEECTTSCCS--CCCS--------------C--CTTCSEEECCSSCCSSC-C---C---CCTTCCEEECCSSCCS-
T ss_pred             cCCCEEEeCCCCCC--CCCC--------------C--CCCCCEEECCCCCCccc-c---c---chhhhhhhhhhhcccc-
Confidence            47888888888774  2442              2  46788888888887743 4   1   1345666666666553 


Q ss_pred             cCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccC
Q 041782          193 EFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISE  272 (821)
Q Consensus       193 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~  272 (821)
                      .++. +  .+.|++|++++|.++ .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+...  .+..+..
T Consensus        92 ~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~  160 (353)
T d1jl5a_          92 ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQN  160 (353)
T ss_dssp             CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTT
T ss_pred             hhhh-h--ccccccccccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccc
Confidence            2221 0  124556666666555 3332 34555555555555555422 11   1234444444443332  1223344


Q ss_pred             CCCcCeeccccCCc
Q 041782          273 LKRLEYLDLHSNNL  286 (821)
Q Consensus       273 l~~L~~L~L~~n~l  286 (821)
                      ++.++.+++++|..
T Consensus       161 l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         161 LPFLTAIYADNNSL  174 (353)
T ss_dssp             CTTCCEEECCSSCC
T ss_pred             cccceecccccccc
Confidence            44455555444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.9e-17  Score=174.33  Aligned_cols=179  Identities=26%  Similarity=0.309  Sum_probs=113.7

Q ss_pred             CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782           88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH  167 (821)
Q Consensus        88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~  167 (821)
                      ++++|||++++++ .+|   .  -.++|++|+|++|+++  ++|+.                +.+|+.|++++|.++...
T Consensus        39 ~l~~LdLs~~~L~-~lp---~--~~~~L~~L~Ls~N~l~--~lp~~----------------~~~L~~L~l~~n~l~~l~   94 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLP---E--LPPHLESLVASCNSLT--ELPEL----------------PQSLKSLLVDNNNLKALS   94 (353)
T ss_dssp             TCSEEECTTSCCS-CCC---S--CCTTCSEEECCSSCCS--SCCCC----------------CTTCCEEECCSSCCSCCC
T ss_pred             CCCEEEeCCCCCC-CCC---C--CCCCCCEEECCCCCCc--ccccc----------------hhhhhhhhhhhcccchhh
Confidence            4667888888776 344   2  3678888888888885  46653                357888888888876432


Q ss_pred             CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782          168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIG  247 (821)
Q Consensus       168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  247 (821)
                      .     +  .+.|++|++++|.+. .+|. ++.+++|++|++++|.+... +.   ....+..+.+..+...  .+..+.
T Consensus        95 ~-----l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~  159 (353)
T d1jl5a_          95 D-----L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQ  159 (353)
T ss_dssp             S-----C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCT
T ss_pred             h-----h--ccccccccccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--cccccc
Confidence            1     1  146888888888875 4554 67788888888888887633 22   3456777777776654  335577


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCcccc
Q 041782          248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLS  313 (821)
Q Consensus       248 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  313 (821)
                      .++.++.|++++|.+.. .+..   ....+.+...++.+. .++   .+..++.|+.+++++|...
T Consensus       160 ~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~-~~~---~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         160 NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP---ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC---CCTTCTTCCEEECCSSCCS
T ss_pred             ccccceecccccccccc-cccc---ccccccccccccccc-ccc---ccccccccccccccccccc
Confidence            78888888888887663 2221   123344444444333 111   1445556666666655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-20  Score=208.89  Aligned_cols=109  Identities=24%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             CCCEEecCCcccccc-CCccccCCCCCCEEEccCCcCCC----CcchhhhcCCCCCEEEccCCcCCCC----CccccC-C
Q 041782          179 ELSWLALANINLIGE-FPSWLMNLTQLTYINFDLNQLTG----PIPNWLANLNRLTILSLKSNQLRGY----LPSQIG-S  248 (821)
Q Consensus       179 ~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~-~  248 (821)
                      +|++||++++++++. +.+.+..+++++.|+|++|.++.    .+...+..+++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777766542 12334456666777777776653    2334455666666666666666421    111221 1


Q ss_pred             CCCCCEEEccCccCCCC----CCccccCCCCcCeeccccCCce
Q 041782          249 LTQLTALDLSCNQFQGP----VPSSISELKRLEYLDLHSNNLS  287 (821)
Q Consensus       249 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  287 (821)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23566666666655432    2233444555555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.3e-17  Score=164.95  Aligned_cols=203  Identities=20%  Similarity=0.269  Sum_probs=152.4

Q ss_pred             eeccCCccCCCCchhhhCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccCchhhcCCCCCCEEe
Q 041782          426 YLVSNNLLTGKLAPWLCNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRIPRSLANCTMLEFLD  505 (821)
Q Consensus       426 l~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  505 (821)
                      .++..+.+++.+  .+..+.+|++|++.+|.++.. +       .+..+++|++|++++|.+++..|  +..+++|++++
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l-~-------~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~   91 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE   91 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc-h-------hHhcCCCCcEeecCCceeecccc--ccccccccccc
Confidence            344445555433  345677889999999888743 2       24568899999999998875543  88888999999


Q ss_pred             CCCCcCCcCCchhhCCCCCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccch
Q 041782          506 LGNNQIADIFPSWLGTLPELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLK  585 (821)
Q Consensus       506 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~  585 (821)
                      +++|.++..  ..+.++++|+.+++++|...+..+.    ...+.++.+.++++.+....+   +.              
T Consensus        92 ~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~---~~--------------  148 (227)
T d1h6ua2          92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISP---LA--------------  148 (227)
T ss_dssp             CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGG---GG--------------
T ss_pred             ccccccccc--ccccccccccccccccccccccchh----ccccchhhhhchhhhhchhhh---hc--------------
Confidence            999988765  3577888999999988877643221    446788888888887753222   10              


Q ss_pred             hcccCCCCCcccccCCccccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEEe
Q 041782          586 YMQDQPGQSLNYILPSSSAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCLN  665 (821)
Q Consensus       586 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~  665 (821)
                                                                     ..+.|+.|++++|.+.+..  .++++++|++|+
T Consensus       149 -----------------------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  179 (227)
T d1h6ua2         149 -----------------------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLK  179 (227)
T ss_dssp             -----------------------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             -----------------------------------------------cccccccccccccccccch--hhcccccceecc
Confidence                                                           1234889999999987543  388999999999


Q ss_pred             CCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          666 LSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       666 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      |++|++++ +|. ++++++|++|+|++|++++..|  ++++++|++|++++
T Consensus       180 Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             cCCCccCC-Chh-hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            99999985 443 8999999999999999996543  88999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.7e-20  Score=202.52  Aligned_cols=247  Identities=19%  Similarity=0.099  Sum_probs=133.4

Q ss_pred             CCCCCCCeEECCCcccceeccccch---hccCCCeeEEecCCCCCc-----hhhhhhcCCCccceEecccCCCCCCCC--
Q 041782          297 PKLKSLIVLFLSANNLSLITRNTVN---IRLQNKFVFLGLASCNLK-----EFLDFLNDQDQLELLDLSANKIPGKIP--  366 (821)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~~L~~L~L~~~~l~-----~~~~~l~~l~~L~~L~Ls~n~l~~~~p--  366 (821)
                      .....++.++++++...........   .........+.+..+.+.     .....+...+.++.+++++|.+.....  
T Consensus       166 ~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~  245 (460)
T d1z7xw1         166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE  245 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccch
Confidence            3445566666665554322111100   011223445555555542     122344556667777777765432110  


Q ss_pred             ---cchhccCCCCeeEEEcCCCCCCCCCCCc---cccccCCccEEEeccCcccCcCCCCCcccceeeccCCccCCCCchh
Q 041782          367 ---GWLLNVTTGNLQFVNLSYNLITGFDRGS---VVLLWTDLVTLDLRSNKLQGPLPIPPESTIHYLVSNNLLTGKLAPW  440 (821)
Q Consensus       367 ---~~l~~~~~~~L~~L~Ls~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~  440 (821)
                         ......  ..++.+++++|.+.......   .....+.++.+++++|.+.....      .           .+...
T Consensus       246 ~~~~~~~~~--~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~------~-----------~l~~~  306 (460)
T d1z7xw1         246 LCPGLLHPS--SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA------R-----------LLCET  306 (460)
T ss_dssp             HHHHHTSTT--CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH------H-----------HHHHH
T ss_pred             hhccccccc--cccccccccccccccccccccccccccccccccccccccccccccc------c-----------hhhcc
Confidence               011111  45777777777665432211   12234667777777776542100      0           00011


Q ss_pred             h-hCCCCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCcccccc----Cchhhc-CCCCCCEEeCCCCcCCcC
Q 041782          441 L-CNLNSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGR----IPRSLA-NCTMLEFLDLGNNQIADI  514 (821)
Q Consensus       441 l-~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~-~l~~L~~L~L~~n~l~~~  514 (821)
                      + .....|+.+++++|.++......+..  .+...++|++|+|++|.+++.    ++..+. ..+.|++|+|++|+|++.
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~--~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSS--VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHH--HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccchhhhhhhhccc--ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            1 12356888888888776553332221  233456788888888888643    233343 467789999999988764


Q ss_pred             ----CchhhCCCCCCCEEEccCCcCcccCCCCCc---cCCCCCCcEEEccCCcCccC
Q 041782          515 ----FPSWLGTLPELKVLMLQFNRFHGEIGEPDT---GFVFPKLRIIDLSHNRFSGK  564 (821)
Q Consensus       515 ----~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~L~Ls~N~l~g~  564 (821)
                          ++..+..+++|++|+|++|+++......+.   ......|+.|++.+|.+...
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence                334556678899999999988642111110   01235799999999988743

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=4.1e-17  Score=161.25  Aligned_cols=189  Identities=25%  Similarity=0.306  Sum_probs=120.0

Q ss_pred             EEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCC
Q 041782           90 IKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSA  169 (821)
Q Consensus        90 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~  169 (821)
                      +.++++...+++.+    .+..+.+|++|++.+|+++.  ++ .             +.++++|++|++++|.+++..  
T Consensus        22 ~~~~l~~~~~~d~~----~~~~l~~L~~L~l~~~~i~~--l~-~-------------l~~l~~L~~L~ls~n~i~~~~--   79 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV----TQADLDGITTLSAFGTGVTT--IE-G-------------VQYLNNLIGLELKDNQITDLA--   79 (227)
T ss_dssp             HHHHTTCSSTTSEE----CHHHHHTCCEEECTTSCCCC--CT-T-------------GGGCTTCCEEECCSSCCCCCG--
T ss_pred             HHHHhCCCCcCCcC----CHHHcCCcCEEECCCCCCCc--ch-h-------------HhcCCCCcEeecCCceeeccc--
Confidence            34455555555433    45667778888888877742  32 2             667778888888888777653  


Q ss_pred             CchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCC
Q 041782          170 SFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSL  249 (821)
Q Consensus       170 ~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  249 (821)
                         .+..+++|+++++++|.++. + ..+.++++|++++++++...+.  ..+...+.++.+.++.+.+...  ..+.+.
T Consensus        80 ---~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~  150 (227)
T d1h6ua2          80 ---PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGL  150 (227)
T ss_dssp             ---GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ---cccccccccccccccccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccc
Confidence               26677777777777776642 3 3466777777777777766543  2355666777777777766533  335566


Q ss_pred             CCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCccccee
Q 041782          250 TQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLI  315 (821)
Q Consensus       250 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  315 (821)
                      ++|++|++++|.+.+.  ..++++++|++|++++|++++ ++   .+.++++|++|++++|+++.+
T Consensus       151 ~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~---~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS---PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECTTSCCCBC
T ss_pred             cccccccccccccccc--hhhcccccceecccCCCccCC-Ch---hhcCCCCCCEEECcCCcCCCC
Confidence            7777777777766533  236667777777777776654 22   155666666666666666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.2e-16  Score=153.55  Aligned_cols=167  Identities=25%  Similarity=0.351  Sum_probs=121.6

Q ss_pred             ccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCcc
Q 041782          110 FHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANIN  189 (821)
Q Consensus       110 ~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~  189 (821)
                      ..+.+|++|++++|.+..  ++              .+..+++|++|+|++|++++..     .++.+++|++|++++|+
T Consensus        43 ~~L~~L~~L~l~~~~i~~--l~--------------~l~~l~~L~~L~L~~n~i~~l~-----~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS--VQ--------------GIQYLPNVTKLFLNGNKLTDIK-----PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC--CT--------------TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSC
T ss_pred             HHhcCccEEECcCCCCCC--ch--------------hHhhCCCCCEEeCCCccccCcc-----ccccCcccccccccccc
Confidence            456778888888887753  22              2667888888888888887653     35678888888888887


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCcc
Q 041782          190 LIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSS  269 (821)
Q Consensus       190 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  269 (821)
                      +.+ +| .+.++++|+.|++++|.+.. + ..+..+++++.+++++|.+++.  ..+..+++|+++++++|++++. + .
T Consensus       102 i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~  173 (210)
T d1h6ta2         102 VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-P  173 (210)
T ss_dssp             CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-G
T ss_pred             ccc-cc-cccccccccccccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccc-c-c
Confidence            754 44 47778888888888887763 2 3577788888888888887742  4566788888888888888743 3 3


Q ss_pred             ccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCC
Q 041782          270 ISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSA  309 (821)
Q Consensus       270 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~  309 (821)
                      +.++++|++|++++|++++ ++   .+..+++|++|+|++
T Consensus       174 l~~l~~L~~L~Ls~N~i~~-l~---~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISD-LR---ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG---GGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Ch---hhcCCCCCCEEEccC
Confidence            7788888888888888763 32   277788888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.8e-16  Score=149.78  Aligned_cols=164  Identities=29%  Similarity=0.344  Sum_probs=111.5

Q ss_pred             cccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCc
Q 041782          109 LFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANI  188 (821)
Q Consensus       109 l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n  188 (821)
                      ...++++++|++++|.+..  ++              .+..+++|++|++++|++++..     .++++++|++|++++|
T Consensus        36 ~~~l~~l~~L~l~~~~i~~--l~--------------~l~~l~nL~~L~Ls~N~l~~~~-----~l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS--ID--------------GVEYLNNLTQINFSNNQLTDIT-----PLKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC--CT--------------TGGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSS
T ss_pred             HHHhcCCCEEECCCCCCCC--cc--------------ccccCCCcCcCccccccccCcc-----cccCCccccccccccc
Confidence            3566778888888877642  22              1667778888888888777653     2667777788888777


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCc
Q 041782          189 NLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS  268 (821)
Q Consensus       189 ~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  268 (821)
                      .+.. ++ .+.++++|++|++++|.+...  ..+..+++|+.|++++|++.. + +.+..+++|++|++.+|++++. + 
T Consensus        95 ~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-  166 (199)
T d2omxa2          95 QIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-  166 (199)
T ss_dssp             CCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-
T ss_pred             cccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-
Confidence            7643 32 367777788888877777643  346677778888887777763 2 3577777788888877777743 2 


Q ss_pred             cccCCCCcCeeccccCCceeecccccccCCCCCCCeE
Q 041782          269 SISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVL  305 (821)
Q Consensus       269 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  305 (821)
                      .++++++|++|++++|++++ ++   .+..+++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~---~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS---VLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG---GGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc---cccCCCCCCcC
Confidence            36777777777777777764 22   25666666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=158.58  Aligned_cols=203  Identities=16%  Similarity=0.103  Sum_probs=131.7

Q ss_pred             CCCcEEEcCCCcCcccCCccccCcccccCCCcccEEeccCccccccC-chhhcCCCCCCEEeCC-CCcCCcCCchhhCCC
Q 041782          445 NSLRVLDLSHNFLSGVLPQCLSNSKIFKNATNLKMIDLSHNLLQGRI-PRSLANCTMLEFLDLG-NNQIADIFPSWLGTL  522 (821)
Q Consensus       445 ~~L~~L~Ls~n~l~~~~p~~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l  522 (821)
                      +++++|++++|+++...+.      +|.++++|++|++++|.+...+ +.+|..++.++++++. .|.+....+..+.++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~------~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l  102 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKG------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL  102 (242)
T ss_dssp             SCCSEEEEESCCCCEECTT------TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECC
T ss_pred             CCCCEEECcCCcCCccChh------Hhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccc
Confidence            4677778887777644322      3455777888888887776543 3457777788877765 356777767777788


Q ss_pred             CCCCEEEccCCcCcccCCCCCccCCCCCCcEEEccCCcCccCCChhhhhccchhhhhccccchhcccCCCCCcccccCCc
Q 041782          523 PELKVLMLQFNRFHGEIGEPDTGFVFPKLRIIDLSHNRFSGKLPSKYFQCWNAIKVANKSQLKYMQDQPGQSLNYILPSS  602 (821)
Q Consensus       523 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  602 (821)
                      ++|+++++++|.+... +.......++.+..+...++.+. .++...|..                              
T Consensus       103 ~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~------------------------------  150 (242)
T d1xwdc1         103 PNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIH-TIERNSFVG------------------------------  150 (242)
T ss_dssp             TTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCC-EECTTSSTT------------------------------
T ss_pred             ccccccccchhhhccc-ccccccccccccccccccccccc-ccccccccc------------------------------
Confidence            8888888888877632 22222233455555555555554 333221110                              


Q ss_pred             cccccccccceeeeeeEEEEecceeeecccccccccEEEcccccccCccccccccCCCCCEE-eCCCcccCcchhhhhcC
Q 041782          603 SAYIFDYSLQYIYAYSITMVNKGIEMNYGKVSNFLTGIILSNNKLIGKIPTSISELKGLNCL-NLSGNNLLGHIPSSLGN  681 (821)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L-~Ls~N~l~~~ip~~l~~  681 (821)
                                                    ....++.|++++|+++.. +.......+++++ ++++|+++...+..|.+
T Consensus       151 ------------------------------~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         151 ------------------------------LSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             ------------------------------SBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             ------------------------------ccccceeeeccccccccc-ccccccchhhhccccccccccccccHHHhcC
Confidence                                          012367788999988844 4444445555544 57778888555567889


Q ss_pred             ccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          682 LTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       682 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      +++|++|+|++|+++...+..|.+++.|+++++.+
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            99999999999999866666788888888777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.6e-16  Score=152.14  Aligned_cols=155  Identities=19%  Similarity=0.219  Sum_probs=99.7

Q ss_pred             CCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCE
Q 041782          151 TKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTI  230 (821)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  230 (821)
                      +++++|+|++|+|++.++.  ..+.++++|++|++++|.+.+..+..+..+++|++|+|++|+++...+..|.++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~--~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCS--CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccc--cccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            4566777777777653321  44566667777777777776666677777777888888888777666677777888888


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEECCCc
Q 041782          231 LSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSAN  310 (821)
Q Consensus       231 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  310 (821)
                      |+|++|+|++..|..|..+++|++|+|++|.+....... .-...++.+.+..+.+....|     ..+..++.++++.|
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p-----~~l~~~~l~~L~~n  180 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP-----SKVRDVQIKDLPHS  180 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS-----TTTTTSBGGGSCTT
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCC-----hhhcCCEeeecCHh
Confidence            888888887776777777888888888887776432211 111234555555555543222     23455556666666


Q ss_pred             ccc
Q 041782          311 NLS  313 (821)
Q Consensus       311 ~l~  313 (821)
                      .+.
T Consensus       181 ~l~  183 (192)
T d1w8aa_         181 EFK  183 (192)
T ss_dssp             TCC
T ss_pred             hCc
Confidence            554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.1e-15  Score=148.40  Aligned_cols=163  Identities=28%  Similarity=0.334  Sum_probs=138.5

Q ss_pred             CEEEEEcCCCCCcccccCCcccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCC
Q 041782           88 HVIKLNLTSSCIYGSINSSSSLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPH  167 (821)
Q Consensus        88 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~  167 (821)
                      .++.|+++++.+.+.    ..+..+++|++|+|++|.+++  ++.              ++.+++|++|++++|++++. 
T Consensus        47 ~L~~L~l~~~~i~~l----~~l~~l~~L~~L~L~~n~i~~--l~~--------------~~~l~~L~~L~l~~n~i~~l-  105 (210)
T d1h6ta2          47 SIDQIIANNSDIKSV----QGIQYLPNVTKLFLNGNKLTD--IKP--------------LANLKNLGWLFLDENKVKDL-  105 (210)
T ss_dssp             TCCEEECTTSCCCCC----TTGGGCTTCCEEECCSSCCCC--CGG--------------GTTCTTCCEEECCSSCCCCG-
T ss_pred             CccEEECcCCCCCCc----hhHhhCCCCCEEeCCCccccC--ccc--------------cccCcccccccccccccccc-
Confidence            578899999888653    268899999999999999864  443              68899999999999999864 


Q ss_pred             CCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccC
Q 041782          168 SASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIG  247 (821)
Q Consensus       168 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  247 (821)
                          ..+..+++|++|++++|.+.. + ..+..+++++++++++|.+++  +..+..+++|+++++++|++++. + .+.
T Consensus       106 ----~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~  175 (210)
T d1h6ta2         106 ----SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLA  175 (210)
T ss_dssp             ----GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGT
T ss_pred             ----ccccccccccccccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-ccc
Confidence                457889999999999998753 3 468899999999999999985  34578899999999999999864 3 489


Q ss_pred             CCCCCCEEEccCccCCCCCCccccCCCCcCeecccc
Q 041782          248 SLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHS  283 (821)
Q Consensus       248 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  283 (821)
                      ++++|++|++++|.+++ +| .+.++++|++|++++
T Consensus       176 ~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99999999999999984 55 589999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=7.4e-17  Score=154.58  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=42.7

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCcccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEccc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGNNLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVSD  716 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  716 (821)
                      |+.|+|++|++++..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+....+. ..-...++.+.+..
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~  158 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNG  158 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccC
Confidence            45555555555544455555555555555555555555555555555555555555555432211 11112234444445


Q ss_pred             CcccccCC
Q 041782          717 NNLTGQIP  724 (821)
Q Consensus       717 N~l~g~iP  724 (821)
                      |.+++..|
T Consensus       159 ~~~~c~~p  166 (192)
T d1w8aa_         159 GAARCGAP  166 (192)
T ss_dssp             GGCBBCSS
T ss_pred             CCeEeCCC
Confidence            55554444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.9e-15  Score=143.29  Aligned_cols=152  Identities=32%  Similarity=0.379  Sum_probs=117.2

Q ss_pred             CCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCC
Q 041782          148 GNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNR  227 (821)
Q Consensus       148 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  227 (821)
                      ..+.++++|++++|.++..     ..++.+++|++|++++|++++..|  ++++++|++|++++|.+.. ++ .+.++++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l-----~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~  107 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTN  107 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred             HHhcCCCEEECCCCCCCCc-----cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccc
Confidence            4567889999999988764     447788889999999988865432  8888899999999888874 33 4788888


Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcCeeccccCCceeecccccccCCCCCCCeEEC
Q 041782          228 LTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFL  307 (821)
Q Consensus       228 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  307 (821)
                      |+.|++++|.+...  ..+..+++|+.|++++|.+.. + +.+..+++|++|++.+|++++. +   .+.++++|++|++
T Consensus       108 L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~---~l~~l~~L~~L~l  179 (199)
T d2omxa2         108 LTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K---PLANLTTLERLDI  179 (199)
T ss_dssp             CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G---GGTTCTTCCEEEC
T ss_pred             cccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c---cccCCCCCCEEEC
Confidence            99999888887743  457788888899998888873 3 3577888888888888888752 2   2677888888888


Q ss_pred             CCcccceec
Q 041782          308 SANNLSLIT  316 (821)
Q Consensus       308 ~~n~l~~~~  316 (821)
                      ++|+++.++
T Consensus       180 s~N~i~~i~  188 (199)
T d2omxa2         180 SSNKVSDIS  188 (199)
T ss_dssp             CSSCCCCCG
T ss_pred             CCCCCCCCc
Confidence            888876543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-15  Score=150.88  Aligned_cols=157  Identities=16%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCc-chhhhcCCCCCEEE
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPI-PNWLANLNRLTILS  232 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~  232 (821)
                      ++++.++..++..++    .+  .+++++|++++|.+....+..|.++++|++|++++|.+...+ +..|..++.++++.
T Consensus        11 ~~i~c~~~~l~~iP~----~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVTEIPS----DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCSSCCS----CS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCCCcCC----CC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccc
Confidence            677777777764322    11  146677777777765433445677777777777777665433 34566677777776


Q ss_pred             ccC-CcCCCCCccccCCCCCCCEEEccCccCCCCCCc-cccCCCCcCeeccccCCceeecccccccCCC-CCCCeEECCC
Q 041782          233 LKS-NQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPS-SISELKRLEYLDLHSNNLSGNVYIEELLPKL-KSLIVLFLSA  309 (821)
Q Consensus       233 Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l-~~L~~L~L~~  309 (821)
                      +.. |.+....+..|.++++|++|++++|.+....+. .+..+..+..+...++.+.. ++. ..+..+ ..++.|++++
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~-i~~-~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IER-NSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE-ECT-TSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccc-ccc-cccccccccceeeeccc
Confidence            653 456555566667777777777777766533221 12233444444444444432 222 123333 2455556655


Q ss_pred             cccceeccc
Q 041782          310 NNLSLITRN  318 (821)
Q Consensus       310 n~l~~~~~~  318 (821)
                      |.++.+...
T Consensus       163 n~l~~i~~~  171 (242)
T d1xwdc1         163 NGIQEIHNC  171 (242)
T ss_dssp             SCCCEECTT
T ss_pred             ccccccccc
Confidence            555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=154.77  Aligned_cols=224  Identities=16%  Similarity=0.115  Sum_probs=128.4

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCC-cchhhhcCCCCCEEE
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGP-IPNWLANLNRLTILS  232 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~  232 (821)
                      ++|||+++.+.....   ..+.. ..+..+.++.......+ .......+|++||+++|.++.. +...+..+++|++|+
T Consensus         3 ~~lDLs~~~l~~~~l---~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHPDVT---GRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCHHHH---HHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCchHH---HHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            578998887653211   22211 23455666655543322 2234556888888888877643 345567788888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCc-cCCCCC-CccccCCCCcCeeccccCC-ceeeccccccc-CCCCCCCeEECC
Q 041782          233 LKSNQLRGYLPSQIGSLTQLTALDLSCN-QFQGPV-PSSISELKRLEYLDLHSNN-LSGNVYIEELL-PKLKSLIVLFLS  308 (821)
Q Consensus       233 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~-p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l-~~l~~L~~L~L~  308 (821)
                      +++|.+++..+..++++++|++|+++++ .+++.. ......+++|++|++++|. +++.... ..+ ...++|+.|+++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~-~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLS  156 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECC
T ss_pred             ccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccch-hhhcccccccchhhhc
Confidence            8888887777777888888888888875 344221 1123456777777777753 3321111 112 223566666666


Q ss_pred             Ccc--cceeccccchhccCCCeeEEecCCCCCchhhhhhcCCCccceEecccCC-CCCCCCcchhccCCCCeeEEEcCCC
Q 041782          309 ANN--LSLITRNTVNIRLQNKFVFLGLASCNLKEFLDFLNDQDQLELLDLSANK-IPGKIPGWLLNVTTGNLQFVNLSYN  385 (821)
Q Consensus       309 ~n~--l~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~~~~~~L~~L~Ls~n  385 (821)
                      ++.  ++.                        ..+......+++|++|++++|. +++.....+..+  ++|++|++++|
T Consensus       157 ~~~~~i~~------------------------~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~--~~L~~L~L~~C  210 (284)
T d2astb2         157 GYRKNLQK------------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL--NYLQHLSLSRC  210 (284)
T ss_dssp             SCGGGSCH------------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC--TTCCEEECTTC
T ss_pred             cccccccc------------------------ccccccccccccccccccccccCCCchhhhhhccc--CcCCEEECCCC
Confidence            532  211                        1223334455666666666643 454555555555  66777777664


Q ss_pred             -CCCCCCCCccccccCCccEEEeccC
Q 041782          386 -LITGFDRGSVVLLWTDLVTLDLRSN  410 (821)
Q Consensus       386 -~l~~~~~~~~~~~~~~L~~L~L~~n  410 (821)
                       .+++.... .+..+++|++|+++++
T Consensus       211 ~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         211 YDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             CCCChHHHH-HHhcCCCCCEEeeeCC
Confidence             34433222 2345667777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.1e-15  Score=152.64  Aligned_cols=59  Identities=22%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             ccccEEEcccc-cccCccccccccCCCCCEEeCCCc-ccCcchhhhhcCccCCCeEeCCCC
Q 041782          635 NFLTGIILSNN-KLIGKIPTSISELKGLNCLNLSGN-NLLGHIPSSLGNLTVLESLDLSNN  693 (821)
Q Consensus       635 ~~L~~L~Ls~N-~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N  693 (821)
                      +.|+.|++++| .+++..+..+.++++|++|+|++| .+++.....++++++|++|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            44777777765 366666666777777777777774 566665666677777777777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.8e-14  Score=128.85  Aligned_cols=127  Identities=18%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +.++.+|++|||++|+|+.. +   ..+..+++|++|++++|.+.. + +.+..+++|++|++++|+++...+..+..++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~---~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-E---NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-C---CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             ccCcCcCcEEECCCCCCCcc-C---ccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccc
Confidence            45556677777777776654 2   223456666666666666643 3 2366777777777777777754444556677


Q ss_pred             CCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCccCCCCCCc----cccCCCCcCeec
Q 041782          227 RLTILSLKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQGPVPS----SISELKRLEYLD  280 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~  280 (821)
                      +|++|++++|+++.... ..+..+++|++|++++|.++. .|.    .+..+++|++||
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            77777777777763211 346667777777777776653 232    345566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.1e-13  Score=118.06  Aligned_cols=86  Identities=28%  Similarity=0.394  Sum_probs=34.3

Q ss_pred             cCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCC-CccccCCCCcC
Q 041782          199 MNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPV-PSSISELKRLE  277 (821)
Q Consensus       199 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~  277 (821)
                      .++++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .+.++++|++|++++|++++.. ...+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            33344444444444443 233334444444444444444432 11 2444444444444444443221 12334444444


Q ss_pred             eeccccCCce
Q 041782          278 YLDLHSNNLS  287 (821)
Q Consensus       278 ~L~L~~n~l~  287 (821)
                      +|++++|+++
T Consensus        94 ~L~l~~N~i~  103 (124)
T d1dcea3          94 LLNLQGNSLC  103 (124)
T ss_dssp             EEECTTSGGG
T ss_pred             EEECCCCcCC
Confidence            4444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.5e-14  Score=152.31  Aligned_cols=196  Identities=16%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             ccccCCCCCEEeCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCEEEcCCCCCCCCCCC---C----chhccCCCCC
Q 041782          108 SLFHLRHLEWLSLADNNFNYSKIPSEIMNLSSFSGQVPSLGNLTKLKCLELSQNNFSSPHSA---S----FSWIAKQTEL  180 (821)
Q Consensus       108 ~l~~l~~L~~L~Ls~n~~~~~~lp~~~~~l~~~~~~ip~l~~l~~L~~L~Ls~n~~~~~~~~---~----~~~l~~l~~L  180 (821)
                      ++.+...|+.|+|++|.+.... ...+.         ..+...++|+.|+++++........   .    +..+..+++|
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~-~~~l~---------~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEA-ARWLS---------ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHH-HHHHH---------HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHhhCCCCCEEECcCCcCCHHH-HHHHH---------HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            5666777888888877664210 00000         0156677778888777654432111   0    1223445566


Q ss_pred             CEEecCCcccccc----CCccccCCCCCCEEEccCCcCCCCcchh-------------hhcCCCCCEEEccCCcCCCC--
Q 041782          181 SWLALANINLIGE----FPSWLMNLTQLTYINFDLNQLTGPIPNW-------------LANLNRLTILSLKSNQLRGY--  241 (821)
Q Consensus       181 ~~L~L~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-------------~~~l~~L~~L~Ls~n~l~~~--  241 (821)
                      ++|++++|.+...    +...+...++|++|++++|.+.......             ....+.|+.+++++|.++..  
T Consensus        96 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             ccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccc
Confidence            6666666655432    2223344566666666666543211111             12344556666665555422  


Q ss_pred             --CccccCCCCCCCEEEccCccCCCC-----CCccccCCCCcCeeccccCCceee--cccccccCCCCCCCeEECCCccc
Q 041782          242 --LPSQIGSLTQLTALDLSCNQFQGP-----VPSSISELKRLEYLDLHSNNLSGN--VYIEELLPKLKSLIVLFLSANNL  312 (821)
Q Consensus       242 --~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l  312 (821)
                        +...+...+.|++|++++|.+...     +...+..+++|++|++++|.++..  ......+..+++|++|++++|.+
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence              122233445556666655555421     122334455555555555554321  00112244455555555555554


Q ss_pred             c
Q 041782          313 S  313 (821)
Q Consensus       313 ~  313 (821)
                      +
T Consensus       256 ~  256 (344)
T d2ca6a1         256 S  256 (344)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.3e-13  Score=117.11  Aligned_cols=102  Identities=25%  Similarity=0.281  Sum_probs=71.5

Q ss_pred             CEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEc
Q 041782          154 KCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSL  233 (821)
Q Consensus       154 ~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  233 (821)
                      |+|||++|+++..     ..+..+++|++|++++|.+. .+|..++.+++|++|++++|.++. +| .++.+++|++|++
T Consensus         1 R~L~Ls~n~l~~l-----~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTVL-----CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSSC-----CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCCC-----cccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEEC
Confidence            5677777777644     23567777777777777774 566677777777777777777774 33 4777777777777


Q ss_pred             cCCcCCCCC-ccccCCCCCCCEEEccCccCC
Q 041782          234 KSNQLRGYL-PSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       234 s~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      ++|+++... ...+..+++|++|++++|.++
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            777776432 245677777777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1e-14  Score=153.64  Aligned_cols=41  Identities=32%  Similarity=0.345  Sum_probs=19.1

Q ss_pred             cCCCCCCCEEEccCccCCCCCC----ccccCCCCcCeeccccCCc
Q 041782          246 IGSLTQLTALDLSCNQFQGPVP----SSISELKRLEYLDLHSNNL  286 (821)
Q Consensus       246 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l  286 (821)
                      +...++|++|++++|.+.....    ..+...++|++|++++|.+
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            3445556666665555543211    1223344555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-13  Score=126.15  Aligned_cols=115  Identities=21%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             ccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCcC
Q 041782          198 LMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLE  277 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  277 (821)
                      +.+..+|++|+|++|+|+ .++..+..+++|++|++++|.++..  +.|..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            456667777777777777 3455556677777777777777743  3467777777777777777754444456677777


Q ss_pred             eeccccCCceeecccccccCCCCCCCeEECCCcccceec
Q 041782          278 YLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT  316 (821)
Q Consensus       278 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  316 (821)
                      +|++++|+++..... ..+..+++|++|++++|.++..+
T Consensus        91 ~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          91 ELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGST
T ss_pred             cceeccccccccccc-cccccccccchhhcCCCcccccc
Confidence            777777777642222 34667777777777777765443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=1.2e-13  Score=131.90  Aligned_cols=109  Identities=22%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             CCCCCCCCEEEcCCCCCCCCCCCCchhccCCCCCCEEecCCccccccCCccccCCCCCCEEEccCCcCCCCcchhhhcCC
Q 041782          147 LGNLTKLKCLELSQNNFSSPHSASFSWIAKQTELSWLALANINLIGEFPSWLMNLTQLTYINFDLNQLTGPIPNWLANLN  226 (821)
Q Consensus       147 l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  226 (821)
                      +..+++|++|+|++|+|+..     ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++. + +.+..++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i-----~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~  115 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLV  115 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC-----CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred             HhcccccceeECcccCCCCc-----ccccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccc
Confidence            34444555555555554432     11334444444444444442 233333333445555555555542 2 2344555


Q ss_pred             CCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCccCC
Q 041782          227 RLTILSLKSNQLRGYLP-SQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       227 ~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      +|++|++++|+++.... ..+..+++|++|++++|.+.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            55555555555543211 23455555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.1e-11  Score=109.90  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=75.5

Q ss_pred             ccEEEcccccccCccccccccCCCCCEEeCCCc-ccCcchhhhhcCccCCCeEeCCCCcccccCCCCccccCCccEEEcc
Q 041782          637 LTGIILSNNKLIGKIPTSISELKGLNCLNLSGN-NLLGHIPSSLGNLTVLESLDLSNNNLSGEIPRQLAELTSLAVFDVS  715 (821)
Q Consensus       637 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  715 (821)
                      .+.++.+++.+. ..|..+..+++|++|++++| .++...++.|.++++|+.|+|++|+|+...|..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445777777766 56667777778888888655 4775556677788888888888888877777777888888888888


Q ss_pred             cCcccccCCCC-CCCCCCCCCccCCCCCCCCC
Q 041782          716 DNNLTGQIPQG-KQFNTFENSSFEGNPGLCGK  746 (821)
Q Consensus       716 ~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~~  746 (821)
                      +|+++ .+|.+ .....+....+.|||+-|++
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCCCc-ccChhhhccccccccccCCCcccCCc
Confidence            88877 44443 22334556667777777754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=7e-13  Score=126.46  Aligned_cols=117  Identities=26%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             CCccccCCCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCC
Q 041782          194 FPSWLMNLTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISEL  273 (821)
Q Consensus       194 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  273 (821)
                      ++.++..+++|++|+|++|.|+. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..  +.+.++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--cccccc
Confidence            44556667777777777777663 33 4666777777777777766 3444444455677777777777632  346667


Q ss_pred             CCcCeeccccCCceeecccccccCCCCCCCeEECCCcccceec
Q 041782          274 KRLEYLDLHSNNLSGNVYIEELLPKLKSLIVLFLSANNLSLIT  316 (821)
Q Consensus       274 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  316 (821)
                      ++|++|++++|+++..... ..+..+++|+.|++++|.+....
T Consensus       115 ~~L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccccchhcccccc-ccccCCCccceeecCCCccccCc
Confidence            7777777777776542222 34667777777777777765543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4e-10  Score=102.34  Aligned_cols=88  Identities=24%  Similarity=0.202  Sum_probs=39.9

Q ss_pred             ccCCCCCCEEEccCC-cCCCCcchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCCCCCccccCCCCc
Q 041782          198 LMNLTQLTYINFDLN-QLTGPIPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQGPVPSSISELKRL  276 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  276 (821)
                      +..+++|++|++++| .++...+..|.++++|+.|++++|+++.+.+.+|..+++|++|+|++|+++...+..| ...+|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh-ccccc
Confidence            334444444444433 2443333444445555555555555544444445555555555555555542222222 22245


Q ss_pred             CeeccccCCc
Q 041782          277 EYLDLHSNNL  286 (821)
Q Consensus       277 ~~L~L~~n~l  286 (821)
                      ++|+|++|.+
T Consensus       106 ~~L~L~~Np~  115 (156)
T d2ifga3         106 QELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cccccCCCcc
Confidence            5555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2e-08  Score=91.60  Aligned_cols=67  Identities=22%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             ccCCCCCCEEEccCCcCCCC--cchhhhcCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCccCCC
Q 041782          198 LMNLTQLTYINFDLNQLTGP--IPNWLANLNRLTILSLKSNQLRGYLPSQIGSLTQLTALDLSCNQFQG  264 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  264 (821)
                      +.++++|++|+|++|+++..  ++..+..+++|+.|++++|.++...+-.+.+..+|++|++++|.+..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34556666666666666542  22344555566666666665553322222233345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.1e-08  Score=88.73  Aligned_cols=105  Identities=21%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             CCCCCEEEccCCcCCCCcchhhhcCCCCCEEEccCCcCCCCC--ccccCCCCCCCEEEccCccCCCCCCccccCCCCcCe
Q 041782          201 LTQLTYINFDLNQLTGPIPNWLANLNRLTILSLKSNQLRGYL--PSQIGSLTQLTALDLSCNQFQGPVPSSISELKRLEY  278 (821)
Q Consensus       201 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  278 (821)
                      +..+..++...+... .++..+..+++|++|+|++|+++..-  +..+..+++|++|++++|.++...+-.+.+..+|++
T Consensus        41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            333444444444333 34445567888999999999888542  345667888888888888888543323344557888


Q ss_pred             eccccCCceeecccc-----cccCCCCCCCeEE
Q 041782          279 LDLHSNNLSGNVYIE-----ELLPKLKSLIVLF  306 (821)
Q Consensus       279 L~L~~n~l~~~~~~~-----~~l~~l~~L~~L~  306 (821)
                      |++++|.+.......     ..+..+++|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            888888876432211     2355677777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=1.2e-05  Score=72.86  Aligned_cols=67  Identities=10%  Similarity=0.087  Sum_probs=35.4

Q ss_pred             cccCCCCCCEEEccCCcCCC----CcchhhhcCCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCccCC
Q 041782          197 WLMNLTQLTYINFDLNQLTG----PIPNWLANLNRLTILSLKSNQLRGY----LPSQIGSLTQLTALDLSCNQFQ  263 (821)
Q Consensus       197 ~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  263 (821)
                      .+...++|++|+|++|.+..    .+.+.+...+.|++|++++|.++..    +-.++...+.|++|++++|.+.
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            34455566666666665543    2223344455666666666665532    1223445556666666655443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=1.8e-05  Score=71.78  Aligned_cols=40  Identities=15%  Similarity=0.195  Sum_probs=19.8

Q ss_pred             CCCCCCEEEccCC-cCCCC----cchhhhcCCCCCEEEccCCcCC
Q 041782          200 NLTQLTYINFDLN-QLTGP----IPNWLANLNRLTILSLKSNQLR  239 (821)
Q Consensus       200 ~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~  239 (821)
                      +.++|++|+|+++ .++..    +-..+...+.|++|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            4466666666653 34321    2223344455555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00012  Score=66.12  Aligned_cols=42  Identities=21%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             ccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEccCCcCC
Q 041782          198 LMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLKSNQLR  239 (821)
Q Consensus       198 l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~  239 (821)
                      +...++|++|++++|.++..    +...+...+.++.+++++|.++
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34455555555555555432    1222334445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00012  Score=65.96  Aligned_cols=86  Identities=15%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             cCCCCCCEEecCCcccccc----CCccccCCCCCCEEEccCCcCCCC----cchhhhcCCCCCEEEcc--CCcCCC----
Q 041782          175 AKQTELSWLALANINLIGE----FPSWLMNLTQLTYINFDLNQLTGP----IPNWLANLNRLTILSLK--SNQLRG----  240 (821)
Q Consensus       175 ~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls--~n~l~~----  240 (821)
                      ...++|++|++++|.+...    +...+...+.++.+++++|.++..    +...+...++|+.++|+  +|.+..    
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            3445555555555544322    223345566777777777766532    22344555666655443  344432    


Q ss_pred             CCccccCCCCCCCEEEccCc
Q 041782          241 YLPSQIGSLTQLTALDLSCN  260 (821)
Q Consensus       241 ~~p~~l~~l~~L~~L~Ls~n  260 (821)
                      .+...+...++|++|+++.+
T Consensus       123 ~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCCCcCEEeCcCC
Confidence            12233445556666665543