Citrus Sinensis ID: 041801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK
cccccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHccccEEEEEEEccccEEEEEEccEEEEEccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccEEEEEEcccccHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHccccccccEEcccEEEEcccccEEEEEEEEEcccc
ccccccccccccEEEEEEccccccccccccccccccccHHHHHHHHHHccEEEEEEEccccccEEEEEcccEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEccccHHHHccccccHHHHHHHcccHHcccccccEEcccccccccccccccccccEEEEEEccccccEEEEEEEccccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEccEEEEEcccccEEEEEEEEEcccc
mavsagfeGFEKRLElhffgddplnnlidnemglrllDFESLQEVLDAVQCTVVSAVGNQYFDAYVlsesslfvyptkiiiktcgttqllksirplvdyaHDLNLTLCACrytrgsfifpksqpfphtsfkeEVFYLeenlpinlcyrkasvmpsklashswhvftasdaqattrqlvsgdvnaTFTLEICMTELDRTMAKNGDTAGKEMTeltgigginpnpnsiicdfafdpcgysmngvdgdrystihvtpedgfsyasfecvgsvyddHDEVAQMLKRVVQVfkpatmsvsttctsheVWTRVVHAIEplglkcrscvmdefpaagsvVFQTFTATRRK
MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPAtmsvsttctshevwTRVVHAIEPLGLKCRSCVMDEFPAagsvvfqtftatrrk
MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAKNGDTAGKEMTELTgigginpnpnsiiCDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK
*******EGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTM***********TELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFT*****
*AVSAGFEGFEKRLELHFFGDDP**********LRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDA************NATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTAT***
MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK
*****GFEGFEKRLELHFFGDDPLNN****EMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQ**********VNATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTAT***
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MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAKNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
Q9AXE3361 S-adenosylmethionine deca N/A no 0.947 0.900 0.428 6e-68
Q96471362 S-adenosylmethionine deca N/A no 0.953 0.903 0.439 2e-67
Q96555362 S-adenosylmethionine deca N/A no 0.953 0.903 0.445 4e-67
Q04694360 S-adenosylmethionine deca N/A no 0.944 0.9 0.449 4e-67
Q42679357 S-adenosylmethionine deca N/A no 0.921 0.885 0.436 6e-67
Q9SDM8367 S-adenosylmethionine deca N/A no 0.944 0.882 0.447 6e-67
O04009361 S-adenosylmethionine deca N/A no 0.953 0.905 0.445 7e-67
O80402361 S-adenosylmethionine deca N/A no 0.953 0.905 0.445 8e-67
O49972369 S-adenosylmethionine deca N/A no 0.973 0.905 0.431 1e-66
Q96286366 S-adenosylmethionine deca no no 0.941 0.882 0.447 1e-66
>sp|Q9AXE3|DCAM_DAUCA S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1 Back     alignment and function desciption
 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 147/343 (42%), Positives = 200/343 (58%), Gaps = 18/343 (5%)

Query: 6   GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAY 65
           GFEGFEKRLE+ FF  +P         GLR+L    L E L   +CT+V+++ N++ D+Y
Sbjct: 9   GFEGFEKRLEISFF--EPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSY 66

Query: 66  VLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPF 125
           VLSESSLFVY  KIIIKTCGTT+LLKSI P++  A  L+LT+ + RYTRG FIFP +Q +
Sbjct: 67  VLSESSLFVYAYKIIIKTCGTTKLLKSIPPILKLADSLSLTVRSVRYTRGCFIFPGAQSY 126

Query: 126 PHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNAT 185
           PH SF EEV  L+          KA +M        WHV++A    A+TR L     +  
Sbjct: 127 PHRSFSEEVSVLDNYFGKLGSGSKAYIMGGSDKQQKWHVYSA--CAASTRTL-----DPV 179

Query: 186 FTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMNG 241
           +T+E+CMT L+R  A    K   ++   +T+ +G+  I   PNS ICDF FDPCGYSMN 
Sbjct: 180 YTMEMCMTSLNRDKASVFYKTNSSSATSVTDNSGLRDI--LPNSRICDFEFDPCGYSMNA 237

Query: 242 VDGDRYSTIHVTPEDGFSYASFECVGSVYDDHD-EVAQMLKRVVQVFKPATMSVSTTCTS 300
           V+G   STIH+TPEDGFSY+SFE VG  YD     ++ ++ RV+  F+P   S++     
Sbjct: 238 VEGPAVSTIHITPEDGFSYSSFEAVG--YDPKSVNLSDLVARVLNCFQPGEFSIALQADI 295

Query: 301 HEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK 343
                    ++   G +      +E    GS+V+Q F  T  +
Sbjct: 296 ASELLEKTSSVHVKGYRVEEKTCEELGMDGSIVYQKFVKTTER 338

Daucus carota (taxid: 4039)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 0
>sp|Q96471|DCAM_IPONI S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1 Back     alignment and function description
>sp|Q96555|DCAM_DATST S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1 Back     alignment and function description
>sp|Q04694|DCAM_SOLTU S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1 Back     alignment and function description
>sp|Q42679|DCAM_CATRO S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1 Back     alignment and function description
>sp|Q9SDM8|DCAM3_BRAJU S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1 Back     alignment and function description
>sp|O04009|DCAM_TOBAC S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1 Back     alignment and function description
>sp|O80402|DCAM_NICSY S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1 Back     alignment and function description
>sp|O49972|DCAM2_BRAJU S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1 Back     alignment and function description
>sp|Q96286|DCAM1_ARATH S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
255551545342 s-adenosylmethionine decarboxylase, puta 0.965 0.967 0.762 1e-152
224102561341 predicted protein [Populus trichocarpa] 0.962 0.967 0.745 1e-150
225432472350 PREDICTED: S-adenosylmethionine decarbox 0.965 0.945 0.736 1e-141
147819543350 hypothetical protein VITISV_030214 [Viti 0.965 0.945 0.733 1e-141
297736954335 unnamed protein product [Vitis vinifera] 0.912 0.934 0.728 1e-134
356520017346 PREDICTED: S-adenosylmethionine decarbox 0.967 0.959 0.676 1e-133
449454596351 PREDICTED: S-adenosylmethionine decarbox 0.965 0.943 0.678 1e-132
357478499346 S-adenosylmethionine decarboxylase proen 0.967 0.959 0.679 1e-131
449472292348 PREDICTED: S-adenosylmethionine decarbox 0.953 0.939 0.686 1e-131
356564555353 PREDICTED: S-adenosylmethionine decarbox 0.970 0.943 0.672 1e-130
>gi|255551545|ref|XP_002516818.1| s-adenosylmethionine decarboxylase, putative [Ricinus communis] gi|223543906|gb|EEF45432.1| s-adenosylmethionine decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 302/353 (85%), Gaps = 22/353 (6%)

Query: 1   MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQ 60
           MAVS GFEGFEKRLELHFFGDDP+  ++DN MGLRLL+FESL  VL+AVQCTVVSAVGNQ
Sbjct: 1   MAVS-GFEGFEKRLELHFFGDDPV--MVDN-MGLRLLEFESLVNVLNAVQCTVVSAVGNQ 56

Query: 61  YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFP 120
           YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPL+ YA +L L+LC+CRYTRG+FIFP
Sbjct: 57  YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLLHYACNLGLSLCSCRYTRGNFIFP 116

Query: 121 KSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSG 180
           KSQPFPHTSFKEEV YLEE LP NLCYRKASVMPSK+ SHSWHVFTASD      Q    
Sbjct: 117 KSQPFPHTSFKEEVIYLEETLPSNLCYRKASVMPSKMTSHSWHVFTASDQNHFISQ---- 172

Query: 181 DVNATFTLEICMTELDRTMA----------KNGDTAGKEMTELTGIGGINPNPNSIICDF 230
             +  +T+E+CMTELDR +A          KNGD AGKEMT+LTGIG I  NP +IICDF
Sbjct: 173 -NHHLYTIEVCMTELDRVLARKFFQPAGDGKNGDVAGKEMTKLTGIGDI--NPGAIICDF 229

Query: 231 AFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDDH-DEVAQMLKRVVQVFKP 289
           AFDPCGYSMNG+D DRYSTIHVTPEDG+SYASFECVGS++DD  D+VA++LK+VVQVF+P
Sbjct: 230 AFDPCGYSMNGIDSDRYSTIHVTPEDGYSYASFECVGSIFDDSDDDVAEVLKKVVQVFRP 289

Query: 290 ATMSVSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRR 342
           ATMSVSTTC SHEVWTRV H+++PLG+KCRSC +DEFPA GSVVFQTFTA R+
Sbjct: 290 ATMSVSTTCNSHEVWTRVAHSLDPLGMKCRSCTVDEFPATGSVVFQTFTARRK 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102561|ref|XP_002312726.1| predicted protein [Populus trichocarpa] gi|222852546|gb|EEE90093.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432472|ref|XP_002277316.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme [Vitis vinifera] Back     alignment and taxonomy information
>gi|147819543|emb|CAN76568.1| hypothetical protein VITISV_030214 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736954|emb|CBI26155.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520017|ref|XP_003528663.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|449454596|ref|XP_004145040.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme 2-like, partial [Cucumis sativus] gi|449516677|ref|XP_004165373.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357478499|ref|XP_003609535.1| S-adenosylmethionine decarboxylase proenzyme [Medicago truncatula] gi|355510590|gb|AES91732.1| S-adenosylmethionine decarboxylase proenzyme [Medicago truncatula] Back     alignment and taxonomy information
>gi|449472292|ref|XP_004153549.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564555|ref|XP_003550518.1| PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
TAIR|locus:2144985347 BUD2 "BUSHY AND DWARF 2" [Arab 0.959 0.948 0.613 9.5e-105
TAIR|locus:2076834366 SAMDC "S-adenosylmethionine de 0.950 0.890 0.434 3.4e-61
TAIR|locus:2146132362 AT5G15950 [Arabidopsis thalian 0.944 0.895 0.418 5.5e-61
TAIR|locus:2094473349 AT3G25570 [Arabidopsis thalian 0.953 0.936 0.444 9.3e-59
DICTYBASE|DDB_G0275567379 amd1 "S-adenosylmethionine dec 0.804 0.728 0.355 3.4e-38
UNIPROTKB|P17707334 AMD1 "S-adenosylmethionine dec 0.903 0.928 0.340 1.1e-34
UNIPROTKB|P50243334 AMD1 "S-adenosylmethionine dec 0.903 0.928 0.338 2.2e-34
UNIPROTKB|Q5F484341 AMD1 "S-adenosylmethionine dec 0.918 0.923 0.326 3.6e-34
UNIPROTKB|F1RT08338 AMD1 "S-adenosylmethionine dec 0.909 0.923 0.336 4.6e-34
MGI|MGI:88004334 Amd1 "S-adenosylmethionine dec 0.903 0.928 0.329 1.5e-33
TAIR|locus:2144985 BUD2 "BUSHY AND DWARF 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 221/360 (61%), Positives = 265/360 (73%)

Query:     1 MAVSAGFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQ 60
             MAVS GFEGFEKRLEL FF DD    +  N MGLRL+DFESL +VL+ VQCTVVSAV N+
Sbjct:     1 MAVS-GFEGFEKRLELRFFDDD--KPITKNPMGLRLIDFESLDQVLNEVQCTVVSAVANR 57

Query:    61 YFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFP 120
              FDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPL+  A +L LTL ACRY+RGSFIFP
Sbjct:    58 SFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIHLARNLGLTLRACRYSRGSFIFP 117

Query:   121 KSQPFPHTSFKEEVFYLEENLPINLCYRKASVM-PSKLASHSWHVFTASDAQATTRQLVS 179
             K+QPFP+TSFK+EV  +EE+LP +LCYRKASVM PS   S +WHVFTAS A       V 
Sbjct:   118 KAQPFPYTSFKDEVIVVEESLPKSLCYRKASVMTPSNNPSRAWHVFTAS-AD------VE 170

Query:   180 GDVNATFTLEICMTELDRTMAK-----------NGDTAGKEMTELTXXXXXXXXXXXXXC 228
              D +    +E+CMTELDR  A+           N D+AGKEMT L+             C
Sbjct:   171 SDEHVV-VVEVCMTELDRVNARSFFKRKGDEKNNSDSAGKEMTRLSGIDNINANAYI--C 227

Query:   229 DFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDD-HDEVAQMLKRVVQVF 287
             DFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFEC  S+YD+ H++++++L R + VF
Sbjct:   228 DFAFDPCGYSMNGVDGDRYSTIHVTPEDGFSYASFECGLSLYDNGHEDISEVLSRAIDVF 287

Query:   288 KPATMSVSTTCT----SHEVWTRVVHAI-EPLGLKCRSCVMDEFPAAGSVVFQTFTATRR 342
             +P+ +S++TT      +HEV  RV   + + L LKCRS +MDEFP +G+VV+Q+FT  R+
Sbjct:   288 RPSDVSIATTYGGEDYNHEVTKRVERVLAKKLDLKCRSRLMDEFPGSGTVVYQSFTPRRK 347
GO:0004014 "adenosylmethionine decarboxylase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006597 "spermine biosynthetic process" evidence=IEA
GO:0008295 "spermidine biosynthetic process" evidence=IEA
TAIR|locus:2076834 SAMDC "S-adenosylmethionine decarboxylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146132 AT5G15950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094473 AT3G25570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275567 amd1 "S-adenosylmethionine decarboxylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P17707 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P50243 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F484 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT08 AMD1 "S-adenosylmethionine decarboxylase proenzyme" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:88004 Amd1 "S-adenosylmethionine decarboxylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P31154DCAM1_MOUSE4, ., 1, ., 1, ., 5, 00.33510.92120.9461yesno
P82184DCAM2_MOUSE4, ., 1, ., 1, ., 5, 00.33510.92120.9461yesno
P17707DCAM_HUMAN4, ., 1, ., 1, ., 5, 00.34630.92120.9461yesno
P17708DCAM_RAT4, ., 1, ., 1, ., 5, 00.33510.92120.9489yesno
P50243DCAM_BOVIN4, ., 1, ., 1, ., 5, 00.34350.92120.9461yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.1.500.914
3rd Layer4.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019871001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (350 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028846001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (297 aa)
     •• 0.922
pVvSPMS
SubName- Full=Chromosome undetermined scaffold_171, whole genome shotgun sequence; (369 aa)
     •• 0.921
GSVIVG00016124001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (374 aa)
     •• 0.916
GSVIVG00032257001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (336 aa)
     •• 0.916
GSVIVG00019965001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (329 aa)
     •• 0.913
METK5
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)
     •  0.899
GSVIVG00026899001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (474 aa)
     •  0.899
GSVIVG00025412001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (816 aa)
     •  0.899
GSVIVG00024734001
RecName- Full=Cytosine-specific methyltransferase; EC=2.1.1.37; (926 aa)
     •  0.899
METK4
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
PLN02524355 PLN02524, PLN02524, S-adenosylmethionine decarboxy 1e-180
pfam01536328 pfam01536, SAM_decarbox, Adenosylmethionine decarb 1e-103
TIGR00535334 TIGR00535, SAM_DCase, S-adenosylmethionine decarbo 9e-82
>gnl|CDD|215287 PLN02524, PLN02524, S-adenosylmethionine decarboxylase Back     alignment and domain information 
 Score =  502 bits (1294), Expect = e-180
 Identities = 170/349 (48%), Positives = 216/349 (61%), Gaps = 19/349 (5%)

Query: 1   MAVSA-GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGN 59
           M VSA GFEGFEKRLE+ FF      +   N  GLR L    L E+L   +CT+VS++ N
Sbjct: 1   MPVSAIGFEGFEKRLEITFFEPPVFAD--PNGRGLRALTRSQLDEILRPAECTIVSSLSN 58

Query: 60  QYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIF 119
             FD+YVLSESSLFVYP KIIIKTCGTT+LL SI PL++ A  L+L++ + +YTRGSFIF
Sbjct: 59  DQFDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIF 118

Query: 120 PKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVS 179
           P +QPFPH SF EEV  L+ +        KA VM        WHV++AS   +      S
Sbjct: 119 PGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKWHVYSASAHNS------S 172

Query: 180 GDVNATFTLEICMTELDRTMA-----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDP 234
                 +TLE+CMT LDR  A      +  ++ +EMT+ +GI  I   P S ICDFAFDP
Sbjct: 173 NSNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKI--LPESEICDFAFDP 230

Query: 235 CGYSMNGVDGDRYSTIHVTPEDGFSYASFECVGSVYDD-HDEVAQMLKRVVQVFKPATMS 293
           CGYSMNG++GD  STIHVTPEDGFSYASFE +G  YD    +++Q+++RV+  FKP   S
Sbjct: 231 CGYSMNGIEGDAISTIHVTPEDGFSYASFEAMG--YDPGDLDLSQLVERVLACFKPKEFS 288

Query: 294 VSTTCTSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRR 342
           V+              +++P G  C+     E P  GSVV+QTFTAT  
Sbjct: 289 VAVHANVGGEAGSWGCSLDPDGYSCKGRSCQELPGGGSVVYQTFTATGG 337

Length = 355
>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase Back     alignment and domain information
>gnl|CDD|233012 TIGR00535, SAM_DCase, S-adenosylmethionine decarboxylase proenzyme, eukaryotic form Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
PLN02524355 S-adenosylmethionine decarboxylase 100.0
TIGR00535334 SAM_DCase S-adenosylmethionine decarboxylase proen 100.0
PF01536331 SAM_decarbox: Adenosylmethionine decarboxylase; In 100.0
KOG0788334 consensus S-adenosylmethionine decarboxylase [Sign 100.0
TIGR03330112 SAM_DCase_Bsu S-adenosylmethionine decarboxylase p 95.87
PRK04025139 S-adenosylmethionine decarboxylase proenzyme; Vali 95.13
PF02675106 AdoMet_dc: S-adenosylmethionine decarboxylase ; In 94.52
PRK02770139 S-adenosylmethionine decarboxylase proenzyme; Prov 94.23
PRK01706123 S-adenosylmethionine decarboxylase proenzyme; Vali 93.65
PRK03124127 S-adenosylmethionine decarboxylase proenzyme; Prov 93.42
PRK01236131 S-adenosylmethionine decarboxylase proenzyme; Prov 92.77
PRK00458127 S-adenosylmethionine decarboxylase proenzyme; Prov 92.54
COG1586136 SpeD S-adenosylmethionine decarboxylase [Amino aci 85.11
PRK05462266 S-adenosylmethionine decarboxylase; Provisional 82.83
>PLN02524 S-adenosylmethionine decarboxylase Back     alignment and domain information 
Probab=100.00  E-value=3.3e-124  Score=912.58  Aligned_cols=325  Identities=50%  Similarity=0.801  Sum_probs=295.6

Q ss_pred             CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccC
Q 041801            6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCG   85 (343)
Q Consensus         6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG   85 (343)
                      +|||+||||||||.+++  +..++.+.|||+|||++|++||++|+|+|||+++|+++||||||||||||||+||||||||
T Consensus         7 ~FEG~EKrLEI~F~~~~--~~~~~~~~gLR~l~~~~w~~iL~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG   84 (355)
T PLN02524          7 GFEGFEKRLEITFFEPP--VFADPNGRGLRALTRSQLDEILRPAECTIVSSLSNDQFDSYVLSESSLFVYPYKIIIKTCG   84 (355)
T ss_pred             CccccceEEEEEEecCc--ccCCCCCCccccCCHHHHHHHHHHcCCEEEeecccCCceeeeecceeEEEECCEEEEEeCC
Confidence            99999999999997542  3334567999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHhhcCceeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEEEE
Q 041801           86 TTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVF  165 (343)
Q Consensus        86 TTtLL~~l~~ll~la~~~g~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~ly  165 (343)
                      |||||+|||+||++|+++|++|++|+||||||+||+.|++||++|+|||++|+++|++++++|+||+||+.+++||||||
T Consensus        85 TT~LL~~i~~ll~la~~~~l~v~~v~YsRknf~fP~~Q~~pH~sf~eEV~~L~~~F~~l~~~G~AY~~G~~~~~~hW~lY  164 (355)
T PLN02524         85 TTKLLLSIPPLLELAARLSLSVRSVKYTRGSFIFPGAQPFPHRSFSEEVSVLDGHFGKLGLGGKAYVMGDPDKGQKWHVY  164 (355)
T ss_pred             cccHHHHHHHHHHHHHHcCCceeEEEEecccccCcccCCCcccCHHHHHHHHHHhcccccCCceEEEeCCCCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999999999987778999999998889999999


Q ss_pred             ecCCccccccccccCCCCCceeeeeeeccCchhhhh-----CCCCcHHHHHHHhCCccccCCCCccccccccCCCccccc
Q 041801          166 TASDAQATTRQLVSGDVNATFTLEICMTELDRTMAK-----NGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSMN  240 (343)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~-----~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSmN  240 (343)
                      ++++.....      ..++|+|||||||+||+++|+     .++++|.+||+.+||++|+|  +++||||+|+|||||||
T Consensus       165 ~a~~~~~~~------~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~s~~~~t~~sgI~~i~P--~~~iddf~F~PCGYSmN  236 (355)
T PLN02524        165 SASAHNSSN------SNEPVYTLEMCMTGLDREKASVFFKDSSLSSAEEMTKASGIRKILP--ESEICDFAFDPCGYSMN  236 (355)
T ss_pred             eCCCccccc------CCCCCeEEEEEccCCCHHHHhhhhhCcccccHHHHHHhhChhhhCC--CCeecccccCCCccccc
Confidence            998764321      136899999999999999993     36699999999999999999  99999999999999999


Q ss_pred             ccCCCceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccccCCCCceecc
Q 041801          241 GVDGDRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIEPLGLKCRS  320 (343)
Q Consensus       241 gi~~~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~~~~~gY~~~~  320 (343)
                      ||.|++|+|||||||++|||||||||+..... .++.+||+|||+||+|++|+||+|++..+.........++.||+|++
T Consensus       237 ~i~g~~y~TIHVTPE~~~SYaSFEtn~~~~~~-~~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~~  315 (355)
T PLN02524        237 GIEGDAISTIHVTPEDGFSYASFEAMGYDPGD-LDLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCKG  315 (355)
T ss_pred             ccCCCceEEEEECCCCCCeEEEEEeccCCccc-cCHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceecC
Confidence            99999999999999999999999999843322 57999999999999999999999998654433333345788999999


Q ss_pred             eeeeeCCCCceEEEEEeeecc
Q 041801          321 CVMDEFPAAGSVVFQTFTATR  341 (343)
Q Consensus       321 ~~~~~f~~~~~l~y~~f~~~~  341 (343)
                      +++++|++||+|+|++|+++.
T Consensus       316 ~~~~~l~~~~~l~y~~f~~~~  336 (355)
T PLN02524        316 RSCQELPGGGSVVYQTFTATG  336 (355)
T ss_pred             cEEEecCCCcEEEEEEEEecC
Confidence            999999998999999998854

>TIGR00535 SAM_DCase S-adenosylmethionine decarboxylase proenzyme, eukaryotic form Back     alignment and domain information
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine Back     alignment and domain information
>KOG0788 consensus S-adenosylmethionine decarboxylase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form Back     alignment and domain information
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated Back     alignment and domain information
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis Back     alignment and domain information
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional Back     alignment and domain information
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated Back     alignment and domain information
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional Back     alignment and domain information
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional Back     alignment and domain information
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional Back     alignment and domain information
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05462 S-adenosylmethionine decarboxylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
1mhm_A288 Crystal Structure Of S-Adenosylmethionine Decarboxy 6e-48
1msv_A354 The S68a S-adenosylmethionine Decarboxylase Proenzy 5e-31
1jl0_A334 Structure Of A Human S-Adenosylmethionine Decarboxy 4e-30
3h0v_A266 Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio) 1e-21
3dz2_A267 Human Adometdc With 5'-[(3-Aminopropyl)methylamino] 1e-21
1i72_A267 Human S-Adenosylmethionine Decarboxylase With Coval 1e-21
1jen_A267 Human S-Adenosylmethionine Decarboxylase Length = 2 2e-21
3ep9_A260 Human Adometdc With No Putrescine Bound Length = 26 3e-21
3ep3_A260 Human Adometdc D174n Mutant With No Putrescine Boun 4e-21
3ep5_A260 Human Adometdc E178q Mutant With No Putrescine Boun 6e-21
3ep4_A260 Human Adometdc E256q Mutant With No Putrescine Boun 6e-21
3dz3_A267 Human Adometdc F223a Mutant With Covalently Bound S 9e-21
1i7m_A267 Human S-Adenosylmethionine Decarboxylase With Coval 1e-18
1mhm_B72 Crystal Structure Of S-Adenosylmethionine Decarboxy 1e-08
>pdb|1MHM|A Chain A, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 288 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (476), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 156/278 (56%), Gaps = 22/278 (7%)
Query: 71  SLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLNLTLCACRYTRGSFIFPKSQPFPHTSF 130
           SLFVY  KIIIKTCGTT+LL +I P++  A  L+L +   RYTRGSFIFP +Q FPH  F
Sbjct: 2   SLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHF 61
Query: 131 KEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVNATFTLEI 190
            EEV  L+          KA +M S   +  WHV++AS     +   V       +TLE+
Sbjct: 62  SEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPV-------YTLEM 114
Query: 191 CMTELDRTMA----KNGDTAGKEMTELTXXXXXXXXXXXXXCDFAFDPCGYSMNGVDGDR 246
           CMT LDR  A    K  +++   MT                CDF F+PCGYSMN ++G  
Sbjct: 115 CMTGLDREKASVFYKTEESSAAHMT--VRSGIRKILPKSEICDFEFEPCGYSMNSIEGAA 172
Query: 247 YSTIHVTPEDGFSYASFECVGSVYDDHD-EVAQMLKRVVQVFKPATMSVSTTCTSHEVWT 305
            STIH+TPEDGF+YASFE VG  Y+    E+  +++RV+  F+PA  SV+      +V T
Sbjct: 173 VSTIHITPEDGFTYASFESVG--YNPKTMELGPLVERVLACFEPAEFSVALHA---DVAT 227
Query: 306 RVVHAIEPLGLKCRSCVM---DEFPAAGSVVFQTFTAT 340
           +++  I  + +K  S      +EF   GS+V+Q FT T
Sbjct: 228 KLLERICSVDVKGYSLAEWSPEEFGEGGSIVYQKFTRT 265
>pdb|1MSV|A Chain A, The S68a S-adenosylmethionine Decarboxylase Proenzyme Processing Mutant. Length = 354 Back     alignment and structure
>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase Self-Processing Ester Intermediate And Mechanism Of Putrescine Stimulation Of Processing As Revealed By The H243a Mutant Length = 334 Back     alignment and structure
>pdb|3H0V|A Chain A, Human Adometdc With 5'-Deoxy-5'-(Dimethylsulfonio) Adenosine Length = 266 Back     alignment and structure
>pdb|3DZ2|A Chain A, Human Adometdc With 5'-[(3-Aminopropyl)methylamino]-5'deoxy- 8-Methyladenosine Length = 267 Back     alignment and structure
>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Covalently Bound 5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl) Amino]adenosine Length = 267 Back     alignment and structure
>pdb|1JEN|A Chain A, Human S-Adenosylmethionine Decarboxylase Length = 267 Back     alignment and structure
>pdb|3EP9|A Chain A, Human Adometdc With No Putrescine Bound Length = 260 Back     alignment and structure
>pdb|3EP3|A Chain A, Human Adometdc D174n Mutant With No Putrescine Bound Length = 260 Back     alignment and structure
>pdb|3EP5|A Chain A, Human Adometdc E178q Mutant With No Putrescine Bound Length = 260 Back     alignment and structure
>pdb|3EP4|A Chain A, Human Adometdc E256q Mutant With No Putrescine Bound Length = 260 Back     alignment and structure
>pdb|3DZ3|A Chain A, Human Adometdc F223a Mutant With Covalently Bound S- Adenosylmethionine Methyl Ester Length = 267 Back     alignment and structure
>pdb|1I7M|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently Bound Pyruvoyl Group And Complexed With 4-Amidinoindan-1-One-2'- Amidinohydrazone Length = 267 Back     alignment and structure
>pdb|1MHM|B Chain B, Crystal Structure Of S-Adenosylmethionine Decarboxylase From Potato Length = 72 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
1jl0_A334 Adometdc, S-adenosylmethionine decarboxylase proen 1e-99
1mhm_A288 Adometdc, samdc, S-adenosylmethionine decarboxylas 1e-95
1mhm_B72 Adometdc, samdc, S-adenosylmethionine decarboxylas 1e-23
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ... Length = 334 Back     alignment and structure
 Score =  296 bits (759), Expect = 1e-99
 Identities = 109/346 (31%), Positives = 166/346 (47%), Gaps = 28/346 (8%)

Query: 6   GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAY 65
            FEG EK LE+ F    P  +       LR +       +L  VQC+++S       +AY
Sbjct: 6   FFEGTEKLLEVWFSRQQP--DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAY 63

Query: 66  VLSESSLFVYPTKIIIKTCGTTQLLKSIRPLVDYAHDLN--LTLCACRYTRGSFIFPKSQ 123
           VLSESS+FV   + I+KTCGTT LLK++ PL+  A D +   ++ +  Y+R +F+ P  Q
Sbjct: 64  VLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQ 123

Query: 124 PFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWHVFTASDAQATTRQLVSGDVN 183
            +PH +F+EE+ +L    P    Y        ++ S  W+++T    ++           
Sbjct: 124 GYPHRNFQEEIEFLNAIFPNGAGY-----CMGRMNSDCWYLYTLDFPESRVIS------Q 172

Query: 184 ATFTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSM 239
              TLEI M+ELD  +            K++T  +GI  +   P S+I    F+PCGYSM
Sbjct: 173 PDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDL--IPGSVIDATMFNPCGYSM 230

Query: 240 NGVDGD-RYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTC 298
           NG+  D  Y TI +TPE  FSY SFE   S          ++++VV+VFKP     +   
Sbjct: 231 NGMKSDGTYWTIAITPEPEFSYVSFETNLSQTS----YDDLIRKVVEVFKPGKFVTTLFV 286

Query: 299 -TSHEVWTRVVHAIEPLGLKCRSCVMDEFPAAGSVVFQTFTATRRK 343
             S +  T +    +  G K   C    F    + VF +F   +++
Sbjct: 287 NQSSKCRTVLASPQKIEGFKRLDCQSAMFN-DYNFVFTSFAKKQQQ 331
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 288 Back     alignment and structure
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
1jl0_A334 Adometdc, S-adenosylmethionine decarboxylase proen 100.0
1mhm_A288 Adometdc, samdc, S-adenosylmethionine decarboxylas 100.0
1mhm_B72 Adometdc, samdc, S-adenosylmethionine decarboxylas 99.94
1vr7_A142 Adometdc, samdc, S-adenosylmethionine decarboxylas 93.99
2iii_A135 S-adenosylmethionine decarboxylase proenzyme; two- 93.97
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ... Back     alignment and structure
Probab=100.00  E-value=6.2e-122  Score=892.14  Aligned_cols=318  Identities=34%  Similarity=0.532  Sum_probs=281.5

Q ss_pred             CCCCcccceEEEEEeecCCCCCcccC-CCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEe
Q 041801            4 SAGFEGFEKRLELHFFGDDPLNNLID-NEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIK   82 (343)
Q Consensus         4 ~~~FEG~EK~LEI~F~~~~~~~~~~~-~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILK   82 (343)
                      +.+|||+||||||||.++.+   .++ +..|||+|||++|++||++|+|+|||+++|+++||||||||||||||+|||||
T Consensus         4 ~~~FEG~EKrLEI~F~~~~~---~~~~~~~~LR~i~~~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiIlK   80 (334)
T 1jl0_A            4 AHFFEGTEKLLEVWFSRQQP---DANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILK   80 (334)
T ss_dssp             -CCCCCCCEEEEEEEECCC--------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEE
T ss_pred             CCCCcccceEEEEEEecCCc---cccCCCCccccCCHHHHHHHHHhcCCEEEEeecccccceEEeccceeeEECCEEEEE
Confidence            35999999999999986421   111 34569999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhhhHHHHHHHHhh-cCc-eeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCC
Q 041801           83 TCGTTQLLKSIRPLVDYAHD-LNL-TLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASH  160 (343)
Q Consensus        83 TCGTTtLL~~l~~ll~la~~-~g~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~  160 (343)
                      ||||||||+|||+||++|++ +|+ .|++|+||||||+||+.|++||++|+|||++|+++|++    |+||+||+.+ +|
T Consensus        81 TCGTT~LL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~----G~aY~~G~~~-~~  155 (334)
T 1jl0_A           81 TCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN----GAGYCMGRMN-SD  155 (334)
T ss_dssp             ECTTCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS----EEEEEESCTT-SS
T ss_pred             eCCCCcHHHHHHHHHHHHHHhcCccceeEEEEcccCCCCcccCCCccCCHHHHHHHHHHhcCC----CcEEEeCCCC-CC
Confidence            99999999999999999976 699 69999999999999999999999999999999999986    8999998875 89


Q ss_pred             cEEEEecCCccccccccccCCCCCceeeeeeeccCchhhh----hCCCCcHHHHHHHhCCccccCCCCccccccccCCCc
Q 041801          161 SWHVFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMA----KNGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCG  236 (343)
Q Consensus       161 hW~ly~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a----~~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCG  236 (343)
                      |||||+++.....      ...++|+|||||||+||+++|    +..+.+|++||+.+||++|+|  +++||||+|+|||
T Consensus       156 hw~ly~~~~~~~~------~~~~~d~TlEilMt~Ld~~~a~~F~~~~~~~a~~~t~~sgi~~i~P--~~~iddf~F~PCG  227 (334)
T 1jl0_A          156 CWYLYTLDFPESR------VISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP--GSVIDATMFNPCG  227 (334)
T ss_dssp             CEEEEEECCC---------CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSS--SCEEEEEECSSBC
T ss_pred             eeEEEecCCcccc------cCCCCcceEEEEccCCCHHHHhhhhcCcCCcHHHHHHHhChhhcCC--CcEeeccccCCcc
Confidence            9999999765431      123689999999999999999    467789999999999999999  9999999999999


Q ss_pred             ccccccCC-CceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccccC-CC
Q 041801          237 YSMNGVDG-DRYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHAIE-PL  314 (343)
Q Consensus       237 YSmNgi~~-~~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~~~-~~  314 (343)
                      ||||||.+ ++|+|||||||++|||||||||++..    ++.+||+|||++|+|++|+||+|++..+.+......++ ++
T Consensus       228 YSmNgi~~~~~Y~TIHVTPE~~~SYaSFETN~~~~----~~~~lv~~Vl~~F~P~~fsvt~f~~~~~~~~~~~~~~~~~~  303 (334)
T 1jl0_A          228 YSMNGMKSDGTYWTIAITPEPEFSYVSFETNLSQT----SYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIE  303 (334)
T ss_dssp             EEEEEECTTSCEEEEEEECCTTSCEEEEEECCCCS----CSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCT
T ss_pred             ceeccccCCCeEEEEEecCCCCCeeEEEEcCcccc----cHHHHHHHHHheeCCCeEEEEEEcCCccccchhhhcccCCC
Confidence            99999995 59999999999999999999999874    68899999999999999999999997776655544555 89


Q ss_pred             CceecceeeeeCCCCceEEEEEeeeccc
Q 041801          315 GLKCRSCVMDEFPAAGSVVFQTFTATRR  342 (343)
Q Consensus       315 gY~~~~~~~~~f~~~~~l~y~~f~~~~~  342 (343)
                      ||+|+||++++|++ |+|+|++|+|...
T Consensus       304 gy~~~d~~~~~~~~-y~l~y~~f~r~~~  330 (334)
T 1jl0_A          304 GFKRLDCQSAMFND-YNFVFTSFAKKQQ  330 (334)
T ss_dssp             TEEEEEEEEEECSS-EEEEEEEEEECC-
T ss_pred             CcEeccceEEecCC-eEEEEEEEEEccc
Confidence            99999999999995 7999999988654
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Back     alignment and structure
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1 Back     alignment and structure
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B* Back     alignment and structure
>2iii_A S-adenosylmethionine decarboxylase proenzyme; two-layer alpha beta-sandwich, structural genomics, NPPSFA; 2.30A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 343
g1mhm.1323 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxyla 1e-116
d1jl0a_325 d.156.1.1 (A:) S-adenosylmethionine decarboxylase 1e-109
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d1jl0a_325 S-adenosylmethionine decarboxylase {Human (Homo sa 100.0
g1mhm.1323 S-adenosylmethionine decarboxylase {Potato (Solanu 100.0
d1vr7a1117 S-adenosylmethionine decarboxylase (SamDC, SpeH) { 96.19
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine decarboxylase
superfamily: S-adenosylmethionine decarboxylase
family: S-adenosylmethionine decarboxylase
domain: S-adenosylmethionine decarboxylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-121  Score=881.32  Aligned_cols=316  Identities=34%  Similarity=0.536  Sum_probs=281.8

Q ss_pred             CCcccceEEEEEeecCCCCCcccCCCCCCcccCHHHHHHHHhccCcEEeeeecCcceeeeeecCceeEEeCCeEEEeccC
Q 041801            6 GFEGFEKRLELHFFGDDPLNNLIDNEMGLRLLDFESLQEVLDAVQCTVVSAVGNQYFDAYVLSESSLFVYPTKIIIKTCG   85 (343)
Q Consensus         6 ~FEG~EK~LEI~F~~~~~~~~~~~~~~~LR~i~r~~w~~~L~~a~C~IlS~~sn~~~DAYvLSESSLFV~~~kiILKTCG   85 (343)
                      +|||+||||||||.++.+.  ..+...|||+|||++|++||++|+|+|||+++|++||||||||||||||||||||||||
T Consensus         2 fFEG~EK~LEi~F~~~~~~--~~~~~~~LR~i~~~~w~~~L~~a~c~IlS~~sn~~~DAYlLSESSLFV~~~kiiLkTCG   79 (325)
T d1jl0a_           2 FFEGTEKLLEVWFSRQQPD--ANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCG   79 (325)
T ss_dssp             CCCCCCEEEEEEEECCC-------CCSCGGGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCCCEEEESSEEEEEECT
T ss_pred             CCCccceEEEEEEccCCCC--CCCCCCCcccCCHHHHHHHHHhcCCEEEEeecccccceEEeechhhheeCCeEEEEECC
Confidence            7999999999999865322  23466899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHhh-cCc-eeeeeEeccccccCCCCCCCCCCChHHHHHHHHhhCCCCCCCCceEEccCCCCCCcEE
Q 041801           86 TTQLLKSIRPLVDYAHD-LNL-TLCACRYTRGSFIFPKSQPFPHTSFKEEVFYLEENLPINLCYRKASVMPSKLASHSWH  163 (343)
Q Consensus        86 TTtLL~~l~~ll~la~~-~g~-~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~F~~~~~~g~ay~~g~~~~~~hW~  163 (343)
                      |||||+|||+||++|++ +|+ +|++|+||||||+||++|++||++|+|||++|+++|++    |+||++|+.+ +||||
T Consensus        80 TTtLL~~l~~ll~la~~~~g~~~v~~v~YsRknf~fP~~Q~~pH~sf~~Ev~~L~~~f~~----G~aY~~G~~~-~~hw~  154 (325)
T d1jl0a_          80 TTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPN----GAGYCMGRMN-SDCWY  154 (325)
T ss_dssp             TCCGGGGHHHHHHHHHHHHCCCEEEEEEEEEECCSSGGGCCTTCSSHHHHHHHHHTTCSS----EEEEEESCTT-SSCEE
T ss_pred             CccHHHHHHHHHHHHHHhcCccceeEEEEecccCcCcccCCcccCCHHHHHHHHHHhCCC----CceEEecCCC-CCeEE
Confidence            99999999999999987 466 69999999999999999999999999999999999985    8999998765 89999


Q ss_pred             EEecCCccccccccccCCCCCceeeeeeeccCchhhhh----CCCCcHHHHHHHhCCccccCCCCccccccccCCCcccc
Q 041801          164 VFTASDAQATTRQLVSGDVNATFTLEICMTELDRTMAK----NGDTAGKEMTELTGIGGINPNPNSIICDFAFDPCGYSM  239 (343)
Q Consensus       164 ly~~~~~~~~~~~~~~~~~~~d~TlEilMt~Ld~~~a~----~~~~~~~~~t~~sgi~~l~p~~~~~id~f~F~PCGYSm  239 (343)
                      ||+++.+...      ...++|+|||||||+||+++|+    ..+.++.+||+.+||++|+|  +++||||+|+||||||
T Consensus       155 ly~~~~~~~~------~~~~~d~TlEilMt~Ld~~~a~~f~~~~~~~~~~~t~~~gi~~l~p--~~~id~f~F~PCGYS~  226 (325)
T d1jl0a_         155 LYTLDFPESR------VISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIP--GSVIDATMFNPCGYSM  226 (325)
T ss_dssp             EEEECCC---------CCCSCCEEEEEEEESCCHHHHGGGBCBTTBCHHHHHHHTTCTTSSS--SCEEEEEECSSBCEEE
T ss_pred             EEecCCcccc------cCCCCceeeeehhcCCChHHHhhhhccCCCCHHHHHHhcChhhhCC--CcEeecccCCCcccee
Confidence            9999865432      2236899999999999999994    57899999999999999999  9999999999999999


Q ss_pred             cccCCC-ceEEEEecCCCCCeeEEEeeccCCCCChhhHHHHHHHHhhcccCCeEEEEEEecCCccccccccc-cCCCCce
Q 041801          240 NGVDGD-RYSTIHVTPEDGFSYASFECVGSVYDDHDEVAQMLKRVVQVFKPATMSVSTTCTSHEVWTRVVHA-IEPLGLK  317 (343)
Q Consensus       240 Ngi~~~-~Y~TIHVTPE~~~SYaSFETN~~~~~~~~~~~~li~~Vl~~F~P~~f~~tl~~~~~~~~~~~~~~-~~~~gY~  317 (343)
                      |||.++ .|+|||||||++|||||||||++..    ++.++|+|||++|+|++|+||+|++..+........ ..++||+
T Consensus       227 N~i~~~~~Y~TiHVTPE~~~SYaSFETN~~~~----~~~~li~~vl~~F~P~~f~vt~f~~~~~~~~~~~~~~~~~~gY~  302 (325)
T d1jl0a_         227 NGMKSDGTYWTIAITPEPEFSYVSFETNLSQT----SYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFK  302 (325)
T ss_dssp             EEECTTSCEEEEEEECCTTSCEEEEEECCCCS----CSHHHHHHHHHHHCCSEEEEEEEEETTCCC-------CCCTTEE
T ss_pred             eeecCCCcEEEEEECCCCCceeEEEecCcchh----hHHHHHHHHHhhcCCceEEEEEEecCCchhhhhhhcccCCCCcc
Confidence            999987 6999999999999999999999864    688999999999999999999999877665555433 4689999


Q ss_pred             ecceeeeeCCCCceEEEEEeeecc
Q 041801          318 CRSCVMDEFPAAGSVVFQTFTATR  341 (343)
Q Consensus       318 ~~~~~~~~f~~~~~l~y~~f~~~~  341 (343)
                      |+|++.++|+ ||+|+|++|+|.+
T Consensus       303 ~~d~~~~~~~-gy~l~y~~y~r~~  325 (325)
T d1jl0a_         303 RLDCQSAMFN-DYNFVFTSFAKKQ  325 (325)
T ss_dssp             EEEEEEEECS-SEEEEEEEEEECC
T ss_pred             eeeeEEEEcC-CeEEEEEEEEecC
Confidence            9999999998 5699999999864
>d1vr7a1 d.156.1.2 (A:2-118) S-adenosylmethionine decarboxylase (SamDC, SpeH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure