Citrus Sinensis ID: 041808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLKFTSKKWRRYLVMLGR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEEEccccccccccccccEEEEEEEEEEccccEEEEEEEEEEEEEEEccEEEEcccccccccccccEEEEEEEEEEcccccHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccEEccEEEEEEHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccEEEEEEEEEEcccccEEEEEccEEEEEEEccEEEcccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEccccEEEccccEEEEEEcccccEEEEEEccc
Coil and Loop (DISEMBL)
MCETRNFYLWLLQIVGLLGLIALILWLslrpknptvtvveltippigdssspaddsngtLSFALEvenpnkdssinfdDIILTFlfgqdaaatdtvpsfdldknkdreirgqsvningrsWKSLRSSISKNGTALLKVDFATKFryktigikskhhgaklqgdvqlgkdgkisgkkKKIKLKFTSKKWRRYLVMLGR
Flexible Loop (DISEMBL)
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTippigdssspadDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATdtvpsfdldknkdreirgqsvningrswkslRSSISKNGTALLKVDFATKFRYKTigikskhhgaklqgdvqlgkdgkisgkkkkiklkftskkwrrylvmlgr
Low Complexity Region (SEG)
MCETRNFYlwllqivgllglialilwlslRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQlgkdgkisgkkkkiklkftskkWRRYLVMLGR
Disordered region (IsUnstruct)
****RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIP******************************INFDDIILTFLFGQDAAATDTV*******************************ISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQG*V*************KIKLKFTSKKWRRYLVM***
Disordered Region (DISOPRED)
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRG********************GTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLG***********IKLKFTSKKWRRYLVMLG*
Disordered Region (DISEMBL)
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLKFTSKKWRRYLVMLGR
Disordered Region (DISPRO)
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLKFTSKKWRRYLVMLGR
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLKFTSKKWRRYLVMLGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
O48915	219	Protein NDR1 OS=Arabidops	yes	no	0.873	0.785	0.310	8e-18

>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 5   RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFAL 64
           RN     L  +   GL +L LWLSLR   P  ++    IP +G    P    N TL+F +
Sbjct: 12  RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG--KDPNSRDNTTLNFMV 69

Query: 65  EVENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVN 115
             +NPNKD  I +DD+ L F                   TVP F     K  +  GQ   
Sbjct: 70  RCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKP 129

Query: 116 INGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGK 175
           +N ++   +  ++  NG+A+ ++D  T+ R+K +  K+K +G ++  DV++  DG +  +
Sbjct: 130 LNNQT---VLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG-VKAQ 185

Query: 176 KKKIKLK 182
           KK IK+K
Sbjct: 186 KKGIKMK 192

Involved in disease resistance. Required for resistance conferred by multiple R genes recognizing different bacterial and oomycete pathogen isolates like avirulent P.syringae or H.parasitica (downy mildew). Required for the establishment of hypersensitive response (HR) and systemic acquired resistance (SAR) after infection with the bacterial pathogen P.syringae DC3000 carrying avrRpt2. Required for resistance to the soilborne fungus V.longisporum. Interaction with RIN4 is required for the activation of the R gene RPS2 and RPS2-mediated resistance.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224076396	193	predicted protein [Populus trichocarpa]	0.928	0.948	0.476	8e-31
357511313	191	hypothetical protein MTR_7g109260 [Medic	0.918	0.947	0.471	7e-27
86155939	214	non-race specific disease resistance pro	0.822	0.757	0.339	7e-17
86155937	214	non-race specific disease resistance pro	0.822	0.757	0.339	1e-16
15232308	219	late embryogenesis abundant hydroxyproli	0.873	0.785	0.310	4e-16
149939429	219	non-race specific disease resistance 1 [	0.873	0.785	0.304	7e-16
149939419	219	non-race specific disease resistance 1 [	0.873	0.785	0.304	1e-15
297830756	218	non-race specific disease resistance 1 [	0.868	0.784	0.311	1e-15
38489222	205	NDR1-like protein [Nicotiana benthamiana	0.837	0.804	0.309	8e-14
388512637	108	unknown [Lotus japonicus]	0.467	0.851	0.485	4e-13

>gi|224076396|ref|XP_002304936.1| predicted protein [Populus trichocarpa] gi|222847900|gb|EEE85447.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/189 (47%), Positives = 128/189 (67%), Gaps = 6/189 (3%)

Query: 1   MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTL 60
           MCET++F+LWLLQI+GLLGL+AL  WLSLRPK P   +++ +IP    +S   ++   T 
Sbjct: 1   MCETKHFHLWLLQIIGLLGLLALCFWLSLRPKEPNFAIIDFSIP----TSVSDENPRATF 56

Query: 61  SFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRS 120
           ++ L+V+N +K+SSI +DDI+L+F + QD    +T+P FD  K+ +      +V+IN   
Sbjct: 57  NYVLQVKNSDKESSIYYDDILLSFKYKQDMVGNNTIPRFDQGKDNNAYQHVPTVDINPLV 116

Query: 121 WKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIK 180
           W++L   IS +GTA L V+  T  +YKT GIKSKHH  K QG + LG DGKI  KKK++K
Sbjct: 117 WRALAKEIS-HGTAKLYVELITSIKYKTWGIKSKHHKVKYQGVLPLGSDGKIKDKKKRVK 175

Query: 181 LKFTSKKWR 189
           L + SKKW+
Sbjct: 176 L-YRSKKWK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511313|ref|XP_003625945.1| hypothetical protein MTR_7g109260 [Medicago truncatula] gi|355500960|gb|AES82163.1| hypothetical protein MTR_7g109260 [Medicago truncatula]

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 122/193 (63%), Gaps = 12/193 (6%)

Query: 1   MCET-RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGT 59
           MCE  ++FY+WLLQ++ LLGL+ L LWL+LRP +P+ ++V ++I    D  S   D NGT
Sbjct: 2   MCEEGKSFYIWLLQVICLLGLLVLCLWLALRPNSPSFSIVVISI----DRPS---DQNGT 54

Query: 60  LSFALEVENPNKDSSINFDDIILTFLFGQ--DAAATDTVPSFDLDKNKDREIRGQSVNIN 117
           + ++LE+ NPNKDSSI +DDIIL+FL+GQ  D     TV SF    +K R I    VN  
Sbjct: 55  IFYSLEIGNPNKDSSIYYDDIILSFLYGQQEDKVGDATVGSFHQGTSKSR-IVSDIVNAK 113

Query: 118 GRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKK 177
              +K L  +IS N TA LK    T++RYKT G++SK H   L+G + +  DGK+S KKK
Sbjct: 114 PGPFKPLFKAIS-NATAELKASLTTRYRYKTWGVRSKFHRLLLKGILPIDSDGKLSRKKK 172

Query: 178 KIKLKFTSKKWRR 190
           K  L   SKK  R
Sbjct: 173 KYPLTRNSKKLGR 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86155939|gb|ABC86707.1| non-race specific disease resistance protein 1-like protein b [Coffea arabica]

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 19  GLIALILWLSLRPKNPTVTVVELTIPPIGDS-SSPADDSNGTLSFALEVENPNKDSSINF 77
           GL AL +WLSLR   P+ ++ +  +P +  + +S    SN TL F L ++N  KD  + +
Sbjct: 23  GLTALFMWLSLRGSKPSCSIEDFYVPSLNATDNSTTTRSNHTLYFDLRLKNEMKDKGVGY 82

Query: 78  DDIILTFLFGQDAA---ATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTA 134
           DD+ LTF + Q+ +   A  TVPSF    +K +  R + V   G  W++   ++S   T 
Sbjct: 83  DDLNLTFFYVQNGSLGIANYTVPSFYQGHDK-KARRKELVQTYGVPWEAAYRAVSNGSTV 141

Query: 135 LLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLK 182
             +V   T+ RYK +   +K HG K+  +V +   GK    KK I+LK
Sbjct: 142 TFRVGLTTRVRYKILFWYTKRHGLKVGANVDVNNSGK-KVNKKGIRLK 188

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|86155937|gb|ABC86706.1| non-race specific disease resistance protein 1-like protein a [Coffea arabica]

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 6/168 (3%)

Query: 19  GLIALILWLSLRPKNPTVTVVELTIPPIGDS-SSPADDSNGTLSFALEVENPNKDSSINF 77
           GL AL +WLSLR   P+ ++ +  +P +  + +S    SN TL F L  +N  KD  + +
Sbjct: 23  GLTALFMWLSLRGSKPSCSIEDFYVPSLNATDNSTTTRSNHTLYFDLRFKNEMKDKGVGY 82

Query: 78  DDIILTFLFGQDAA---ATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTA 134
           DD+ LTF + Q+ +   A  TVPSF    +K +  R + V   G  W++   ++S   T 
Sbjct: 83  DDLNLTFFYVQNGSLGIANYTVPSFYQGHDK-KARRKELVQTYGVPWEAAYRAVSNGSTV 141

Query: 135 LLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIKLK 182
             +V   T+ RYK +   +K HG K+  +V +   GK    KK I+LK
Sbjct: 142 TFRVGLTTRVRYKILFWYTKRHGLKVGANVDVNNSGK-KVNKKGIRLK 188

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232308|ref|NP_188696.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|75274971|sp|O48915.1|NDR1_ARATH RecName: Full=Protein NDR1; AltName: Full=Non-race specific disease resistance protein 1; Short=AtNDR1; Flags: Precursor gi|2754816|gb|AAB95208.1| non-race specific disease resistance protein [Arabidopsis thaliana] gi|11994147|dbj|BAB01168.1| non-race specific disease resistance protein [Arabidopsis thaliana] gi|25082922|gb|AAN72015.1| non-race specific disease resistance protein (NDR1) [Arabidopsis thaliana] gi|30023684|gb|AAP13375.1| At3g20600 [Arabidopsis thaliana] gi|149939437|gb|ABR45925.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939439|gb|ABR45926.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939453|gb|ABR45933.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939457|gb|ABR45935.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|332642881|gb|AEE76402.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 5   RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFAL 64
           RN     L  +   GL +L LWLSLR   P  ++    IP +G    P    N TL+F +
Sbjct: 12  RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG--KDPNSRDNTTLNFMV 69

Query: 65  EVENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVN 115
             +NPNKD  I +DD+ L F                   TVP F     K  +  GQ   
Sbjct: 70  RCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKP 129

Query: 116 INGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGK 175
           +N ++   +  ++  NG+A+ ++D  T+ R+K +  K+K +G ++  DV++  DG +  +
Sbjct: 130 LNNQT---VLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG-VKAQ 185

Query: 176 KKKIKLK 182
           KK IK+K
Sbjct: 186 KKGIKMK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149939429|gb|ABR45921.1| non-race specific disease resistance 1 [Arabidopsis thaliana]

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 5   RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFAL 64
           RN     L  +   GL +L LWLSLR   P  ++    IP +G    P    N TL+F +
Sbjct: 12  RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG--KDPNSRDNTTLNFMV 69

Query: 65  EVENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVN 115
             +NPN+D  I +DD+ L F                   TVP F     K  +  GQ   
Sbjct: 70  RCDNPNRDQGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKP 129

Query: 116 INGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGK 175
           +N    +++  ++  NG+A+ ++D  T+ R+K +  K+K +G ++  DV++  DG +  +
Sbjct: 130 LNN---QTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG-VKAQ 185

Query: 176 KKKIKLK 182
           KK IK+K
Sbjct: 186 KKGIKMK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149939419|gb|ABR45916.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939421|gb|ABR45917.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939423|gb|ABR45918.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939425|gb|ABR45919.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939427|gb|ABR45920.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939431|gb|ABR45922.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939433|gb|ABR45923.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939435|gb|ABR45924.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939441|gb|ABR45927.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939443|gb|ABR45928.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939445|gb|ABR45929.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939447|gb|ABR45930.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939449|gb|ABR45931.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939451|gb|ABR45932.1| non-race specific disease resistance 1 [Arabidopsis thaliana] gi|149939455|gb|ABR45934.1| non-race specific disease resistance 1 [Arabidopsis thaliana]

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 15/187 (8%)

Query: 5   RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFAL 64
           RN     L  +   GL +L LWLSLR   P  ++    IP +G    P    N TL+F +
Sbjct: 12  RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG--KDPNSRDNTTLNFMV 69

Query: 65  EVENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVN 115
             +NPN+D  I +DD+ L F                   TVP F     K  +  GQ   
Sbjct: 70  RCDNPNRDQGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKP 129

Query: 116 INGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGK 175
           +N    +++  ++  NG+A+ ++D  T+ R+K +  K+K +G ++  DV++  DG +   
Sbjct: 130 LNN---QTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG-VKAH 185

Query: 176 KKKIKLK 182
           KK IK+K
Sbjct: 186 KKGIKMK 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830756|ref|XP_002883260.1| non-race specific disease resistance 1 [Arabidopsis lyrata subsp. lyrata] gi|297329100|gb|EFH59519.1| non-race specific disease resistance 1 [Arabidopsis lyrata subsp. lyrata]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 15/186 (8%)

Query: 6   NFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALE 65
           N     L  +   GL +L LWLSLR   P  ++    IP +G   +  D  N TL+F + 
Sbjct: 12  NCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFYIPALGKDLNSRD--NTTLNFMVR 69

Query: 66  VENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVNI 116
            +NPN+D  I +DD+ L F                A  TVP F     K  +  GQ   +
Sbjct: 70  CDNPNRDQGIYYDDVHLNFSTINTTKINSSALVLVANYTVPKFYQGHKKKAKKWGQVKPL 129

Query: 117 NGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKK 176
           N    +++  ++  NG+A+ ++D  T+ R+K I  K+K +G ++  DV++  DG +  +K
Sbjct: 130 NN---QTVLRAVLPNGSAVFRLDLKTRVRFKIIFWKTKSYGIEVGADVEVNGDG-VKAQK 185

Query: 177 KKIKLK 182
           K IK+K
Sbjct: 186 KGIKMK 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38489222|gb|AAR21296.1| NDR1-like protein [Nicotiana benthamiana]

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 11  LLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDS-SSPADDSNGTLSFALEVENP 69
            +Q +   GL AL +WLSLR   P+ ++    +P + +S +S +  SN TLSF L + N 
Sbjct: 14  CIQFILTAGLTALFIWLSLRTTKPSCSLDNFYLPALNNSDNSNSTRSNHTLSFQLNLNNK 73

Query: 70  NKDSSINFDDIILTFLFGQDAA---ATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRS 126
            KD  + +DDI L+F +G + +      TVP F    +K    +G  +      W     
Sbjct: 74  MKDKGVRYDDIKLSFYYGTNTSFPIGNYTVPGFYQGHDKKAHKKG-ILETQKMPWNDALK 132

Query: 127 SISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGD-VQLGKDGKISGKK 176
            +S     + +VD AT+ RYK I   +K H   ++   V++   GK S +K
Sbjct: 133 MVSNGSKVVFRVDVATRVRYKVILWYTKRHNFTVENSKVKVDGSGKSSAQK 183

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512637|gb|AFK44380.1| unknown [Lotus japonicus]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 9/101 (8%)

Query: 1  MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTL 60
          M E + FY++L++ +G LGL+ L LWL+LRPK+P+ +VV L+I        P +  NG++
Sbjct: 1  MSEGKRFYVFLMEFIGFLGLLVLCLWLALRPKSPSYSVVFLSI-----EQHPGE--NGSI 53

Query: 61 SFALEVENPNKDSSINFDDIILTFLFGQ--DAAATDTVPSF 99
           ++LE+ENPNKDSSI +DDIIL+FL+GQ  D     T+ SF
Sbjct: 54 FYSLEIENPNKDSSIYYDDIILSFLYGQQEDKVGETTIGSF 94

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2085725	219	NDR1 "AT3G20600" [Arabidopsis	0.664	0.598	0.296	9.4e-11
TAIR|locus:2085715	255	AT3G20590 "AT3G20590" [Arabido	0.664	0.513	0.315	7.2e-10
TAIR|locus:2085735	222	AT3G20610 "AT3G20610" [Arabido	0.629	0.558	0.266	4.2e-06

TAIR|locus:2085725 NDR1 "AT3G20600" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 43/145 (29%), Positives = 70/145 (48%)

Query:    30 RPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFL---- 85
             R   P  ++    IP +G   +  D  N TL+F +  +NPNKD  I +DD+ L F     
Sbjct:    37 RADKPKCSIQNFFIPALGKDPNSRD--NTTLNFMVRCDNPNKDKGIYYDDVHLNFSTINT 94

Query:    86 --FGQDA---AATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDF 140
                   A       TVP F     K  +  GQ   +N ++   LR+ +  NG+A+ ++D 
Sbjct:    95 TKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKPLNNQT--VLRA-VLPNGSAVFRLDL 151

Query:   141 ATKFRYKTIGIKSKHHGAKLQGDVQ 165
              T+ R+K +  K+K +G ++  DV+
Sbjct:   152 KTQVRFKIVFWKTKRYGVEVGADVE 176

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010942 "positive regulation of cell death" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0004871 "signal transducer activity" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2085715 AT3G20590 "AT3G20590" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 46/146 (31%), Positives = 71/146 (48%)

Query:    30 RPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLF--- 86
             R K P  ++    IP +  + S  D  N TL+F +  +NPNKD  I +DD+ LTF     
Sbjct:    37 RAKKPKCSIQNFYIPALSKNLSSRD--NTTLNFMVRCDNPNKDKGIYYDDVHLTFSTINT 94

Query:    87 ----GQDAA--ATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDF 140
                   D    A  TVP F     K  +  GQ   +N ++   LR+ +  NG+A+ ++D 
Sbjct:    95 TTTNSSDLVLVANYTVPKFYQGHKKKAKKWGQVWPLNNQT--VLRA-VLPNGSAVFRLDL 151

Query:   141 ATKFRYKTIGIKSK-HHGAKLQGDVQ 165
              T  R+K +  K+K +   K+  DV+
Sbjct:   152 KTHVRFKIVFWKTKWYRRIKVGADVE 177

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085735 AT3G20610 "AT3G20610" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query:    34 PTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFL--FGQDA- 90
             P  ++    IP +  S   +D  N TL+F + ++N N    I ++D+ L+F       + 
Sbjct:    41 PRCSIHYFYIPALNKSLISSD--NTTLNFMVRLKNINAKQGIYYEDLHLSFSTRINNSSL 98

Query:    91 -AATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTI 149
               A  TVP F     K  +  GQ++  N ++   +  ++  NG+A+ +VD   + +YK +
Sbjct:    99 LVANYTVPRFYQGHEKKAKKWGQALPFNNQT---VIQAVLPNGSAIFRVDLKMQVKYKVM 155

Query:   150 GIKSKHHGAKLQGDV 164
               K+K +  KL+  V
Sbjct:   156 SWKTKRY--KLKASV 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       154   0.00088  105 3  11 22  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.15s 14.72t   Elapsed:  00:00:01
  Total cpu time:  14.57u 0.15s 14.72t   Elapsed:  00:00:01
  Start:  Sat May 11 05:56:34 2013   End:  Sat May 11 05:56:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV000103 hypothetical protein (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.45
smart00769	100	WHy Water Stress and Hypersensitive response.	98.61
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	97.1
COG5608	161	LEA14-like dessication related protein [Defense me	96.64
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	95.47
PLN03160	219	uncharacterized protein; Provisional	92.87
KOG3950	292	consensus Gamma/delta sarcoglycan [Cytoskeleton]	87.49
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	82.02
PF14155	112	DUF4307: Domain of unknown function (DUF4307)	81.44

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=245.70  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=146.7

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhheeeEeeCCCCEEEEEEEEecceeCCCC--CCCCcceEEEEEEEEEcCCCeeEEEEcc
Q 041808            2 CETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSS--PADDSNGTLSFALEVENPNKDSSINFDD   79 (197)
Q Consensus         2 ~~~r~~c~~~~~~i~~~~i~~li~~lvlrP~~P~~~V~s~~l~~~~~~~~--~~~~l~~~l~~~l~~~NPN~~~~i~Y~~   79 (197)
                      ||++||+++++++++++++++.++|++|||++|+|+|+++++++|++++.  ++..+|++++++++++|||. ++|+|++
T Consensus        35 ~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~  113 (219)
T PLN03160         35 NCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSN  113 (219)
T ss_pred             cceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcC
Confidence            34445555444555555666677888999999999999999999998642  22357888889999999999 8999999


Q ss_pred             eEEEEEECCeEeeecccCCeeecCCCeeEEEEeeeeeCc---hhhHHHhcccccCceEEEEEEEEEEEEEEEEEEEEceE
Q 041808           80 IILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNING---RSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHH  156 (197)
Q Consensus        80 ~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~~~~~~v~l~~---~~~~~l~~d~~~~g~v~l~v~~~~~vr~k~g~~~s~~~  156 (197)
                      +++.++|+|+.+|++.+|+|+|++++++.++.. +++..   ....+|.+|.+ +|.++|+++++.++|+++|.+.++++
T Consensus       114 ~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~t-v~~~~~~~~~~~~L~~D~~-~G~v~l~~~~~v~gkVkv~~i~k~~v  191 (219)
T PLN03160        114 TTTTIYYGGTVVGEARTPPGKAKARRTMRMNVT-VDIIPDKILSVPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHV  191 (219)
T ss_pred             eEEEEEECCEEEEEEEcCCcccCCCCeEEEEEE-EEEEeceeccchhHHHHhh-CCeEEEEEEEEEEEEEEEEEEEEEEE
Confidence            999999999999999999999999999988742 22111   11367999999 99999999999999999999999999


Q ss_pred             eeEEEEEEEeC-CCCccccCCceeeEE
Q 041808          157 GAKLQGDVQLG-KDGKISGKKKKIKLK  182 (197)
Q Consensus       157 ~~~v~C~v~v~-~~g~~~~~~c~~~~~  182 (197)
                      .++++|++.++ .+.++.+++|+.+++
T Consensus       192 ~~~v~C~v~V~~~~~~i~~~~C~~~~~  218 (219)
T PLN03160        192 VVKMNCTMTVNITSQAIQGQKCKRHVD  218 (219)
T ss_pred             EEEEEeEEEEECCCCEEeccEeccccc
Confidence            99999999999 567888999987654

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.45  E-value=3.4e-13  Score=95.49  Aligned_cols=96  Identities=17%  Similarity=0.280  Sum_probs=67.2

Q ss_pred             EEEEEcCCCeeEEEEcceEEEEEECCeEee-ecccCCeeecCCCeeEEEEeeeeeCchh-hHHHhcccccCceEEEEEEE
Q 041808           63 ALEVENPNKDSSINFDDIILTFLFGQDAAA-TDTVPSFDLDKNKDREIRGQSVNINGRS-WKSLRSSISKNGTALLKVDF  140 (197)
Q Consensus        63 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~t~~~~~~~v~l~~~~-~~~l~~d~~~~g~v~l~v~~  140 (197)
                      +|+++|||. ++++|+++++.++|+|+.+| ....|+|+|++++++.+... +.++... ...+.++.  +|..++++.+
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~-v~~~~~~l~~~l~~~~--~~~~~~~v~~   76 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVP-VSVDYSDLPRLLKDLL--AGRVPFDVTY   76 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEE-EEEEHHHHHHHHHHHH--HTTSCEEEEE
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEE-EEEcHHHHHHHHHhhh--ccccceEEEE
Confidence            589999999 99999999999999999999 78889999999999998852 4444333 34444433  4455667777


Q ss_pred             EEEEEEEE-EE--EEEceEeeEEEE
Q 041808          141 ATKFRYKT-IG--IKSKHHGAKLQG  162 (197)
Q Consensus       141 ~~~vr~k~-g~--~~s~~~~~~v~C  162 (197)
                      ++++++++ +.  +.+.+++++.+|
T Consensus        77 ~~~g~~~v~~~~~~~~~~v~~~~~~  101 (101)
T PF03168_consen   77 RIRGTFKVLGTPIFGSVRVPVSCEC  101 (101)
T ss_dssp             EEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred             EEEEEEEEcccceeeeEEEeEEeEC
Confidence            77777774 33  334444444444

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.61  E-value=6.9e-07  Score=63.64  Aligned_cols=82  Identities=20%  Similarity=0.223  Sum_probs=65.8

Q ss_pred             CcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEEEeeeeeCchhhHHHhcccccCce
Q 041808           55 DSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGT  133 (197)
Q Consensus        55 ~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~~~~v~l~~~~~~~l~~d~~~~g~  133 (197)
                      ..+.++.+++++.|||. ..+.|++++..++|+|..+|++..+ ++..++++++.+... +.++......+..++. +|.
T Consensus        12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~-~~~~~~~~~~~~~~l~-~~~   88 (100)
T smart00769       12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVP-VTVNLFLAEALIWHIA-NGE   88 (100)
T ss_pred             ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEE-EEeehhHhHHHHHhhc-cCC
Confidence            57889999999999999 8999999999999999999999996 899999999998753 4444445566667776 553


Q ss_pred             -EEEEEE
Q 041808          134 -ALLKVD  139 (197)
Q Consensus       134 -v~l~v~  139 (197)
                       .+.+++
T Consensus        89 ~~~y~l~   95 (100)
T smart00769       89 EIPYRLD   95 (100)
T ss_pred             CccEEEE
Confidence             444333

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=97.10  E-value=0.024  Score=46.34  Aligned_cols=81  Identities=12%  Similarity=0.223  Sum_probs=54.7

Q ss_pred             EeeCCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccCC-eeecCCCe
Q 041808           28 SLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPS-FDLDKNKD  106 (197)
Q Consensus        28 vlrP~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~t  106 (197)
                      .+-|+.-.++-.++.......+... .....++.-.+.++|||. ..+.-.++.+++.|....+|.+.... ...++++.
T Consensus        95 FLfPRsV~v~~~gv~s~~V~f~~~~-~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~  172 (238)
T PF07092_consen   95 FLFPRSVTVSPVGVKSVTVSFNPDK-STVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSS  172 (238)
T ss_pred             EEeCcEEEEecCcEEEEEEEEeCCC-CEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCC
Confidence            3458765554444443333232211 135556666789999998 89999999999999999999887753 35667766


Q ss_pred             eEEE
Q 041808          107 REIR  110 (197)
Q Consensus       107 ~~~~  110 (197)
                      +.+.
T Consensus       173 ~q~~  176 (238)
T PF07092_consen  173 KQVN  176 (238)
T ss_pred             ceEE
Confidence            6554

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=96.64  E-value=0.2  Score=38.22  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=67.5

Q ss_pred             CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeeccc-CCeeecCCCeeEEE
Q 041808           32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTV-PSFDLDKNKDREIR  110 (197)
Q Consensus        32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~t~~~~  110 (197)
                      ++|.+.--.+..-...       .....+-.++.++|||. +.+-...++..++-+|..+|.+.. .++..++++...++
T Consensus        31 ~~p~ve~~ka~wGkvt-------~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd  102 (161)
T COG5608          31 KKPGVESMKAKWGKVT-------NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD  102 (161)
T ss_pred             CCCCceEEEEEEEEEe-------ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence            6777777777665542       23567888999999999 899999999999999999998777 57999999999988


Q ss_pred             EeeeeeCc-hhhHHHhcccccCce
Q 041808          111 GQSVNING-RSWKSLRSSISKNGT  133 (197)
Q Consensus       111 ~~~v~l~~-~~~~~l~~d~~~~g~  133 (197)
                      . .+.++. ...+-+...+. +|.
T Consensus       103 v-~l~~d~~~~ke~w~~hi~-ngE  124 (161)
T COG5608         103 V-PLRLDNSKIKEWWVTHIE-NGE  124 (161)
T ss_pred             E-EEEEehHHHHHHHHHHhh-ccC
Confidence            4 344442 22333444555 444

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=95.47  E-value=0.071  Score=46.45  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=31.2

Q ss_pred             cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeee
Q 041808           56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAAT   93 (197)
Q Consensus        56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~   93 (197)
                      --.-|++++.+.|||- +.|..++.++.||-+-..+|.
T Consensus       346 qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~  382 (387)
T PF12751_consen  346 QELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT  382 (387)
T ss_pred             ceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence            3567899999999999 999999999999977655554

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PLN03160 uncharacterized protein; Provisional

Probab=92.87  E-value=4.3  Score=32.87  Aligned_cols=99  Identities=10%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhheeeEeeCC--CCEEEEEEEEecc-------eeCCCCCC-CCcceEEEEEEEEEcCCC
Q 041808            2 CETRNFYLWLLQIVGLLGLIALILWLSLRPK--NPTVTVVELTIPP-------IGDSSSPA-DDSNGTLSFALEVENPNK   71 (197)
Q Consensus         2 ~~~r~~c~~~~~~i~~~~i~~li~~lvlrP~--~P~~~V~s~~l~~-------~~~~~~~~-~~l~~~l~~~l~~~NPN~   71 (197)
                      |||.|+|.+++++++++++++++++=-=.|+  .-.++++++.++.       +|++-.-. ..-|.+. +.+...  |.
T Consensus        38 ~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~--~~  114 (219)
T PLN03160         38 KCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYS--NT  114 (219)
T ss_pred             EEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEc--Ce
Confidence            6788888888888878877777666555564  3555666655532       22210000 0012222 234443  34


Q ss_pred             eeEEEEcceEEEEEECCeEeeecccCCeeecCCCee
Q 041808           72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDR  107 (197)
Q Consensus        72 ~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~  107 (197)
                      .+.++|+...+.-    ..+..+..++..+..-+.+
T Consensus       115 ~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~t  146 (219)
T PLN03160        115 TTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVT  146 (219)
T ss_pred             EEEEEECCEEEEE----EEcCCcccCCCCeEEEEEE
Confidence            4788998764432    3445555555555555544

>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]

Probab=87.49  E-value=2.2  Score=35.19  Aligned_cols=74  Identities=18%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             chhhHHHHHHHHHHHHHH---HhheeeE----eeCC---CCEEEEEEEEeccee-------C---CCCCCC--CcceEEE
Q 041808            4 TRNFYLWLLQIVGLLGLI---ALILWLS----LRPK---NPTVTVVELTIPPIG-------D---SSSPAD--DSNGTLS   61 (197)
Q Consensus         4 ~r~~c~~~~~~i~~~~i~---~li~~lv----lrP~---~P~~~V~s~~l~~~~-------~---~~~~~~--~l~~~l~   61 (197)
                      ||+-|..+++++++++++   ++.+|+.    |.|.   .-+++=+.+++..-.       .   .+.+..  .+...=+
T Consensus        32 WRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~rn  111 (292)
T KOG3950|consen   32 WRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSARN  111 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEeccC
Confidence            455555555555555554   4677752    5564   344444555554311       1   111111  2444556


Q ss_pred             EEEEEEcCCCeeEEEE
Q 041808           62 FALEVENPNKDSSINF   77 (197)
Q Consensus        62 ~~l~~~NPN~~~~i~Y   77 (197)
                      +++.++|||.++.=+.
T Consensus       112 vtvnarn~~g~v~~~l  127 (292)
T KOG3950|consen  112 VTVNARNPNGKVTGQL  127 (292)
T ss_pred             eeEEccCCCCceeeeE
Confidence            7899999999765443

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=82.02  E-value=4.5  Score=29.77  Aligned_cols=53  Identities=13%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhhee--eEeeCCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCe
Q 041808           11 LLQIVGLLGLIALILW--LSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKD   72 (197)
Q Consensus        11 ~~~~i~~~~i~~li~~--lvlrP~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~   72 (197)
                      .+..+++++++.+++|  +.-+++.|.+++......+-         ...++.+-++++|--.+
T Consensus         9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~---------~~gqyyVpF~V~N~gg~   63 (122)
T TIGR02588         9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM---------QTGQYYVPFAIHNLGGT   63 (122)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE---------eCCEEEEEEEEEeCCCc
Confidence            3455566667777776  45667889998877665432         34567778888887764

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>PF14155 DUF4307: Domain of unknown function (DUF4307)

Probab=81.44  E-value=11  Score=27.13  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             HHHHHHhheeeEee-CCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeee--
Q 041808           17 LLGLIALILWLSLR-PKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAAT--   93 (197)
Q Consensus        17 ~~~i~~li~~lvlr-P~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~--   93 (197)
                      ++.+++++.|+.++ ...|.++-+.   ..|++.+    .-..+++++++-. |.....=...    ...|++..+|.  
T Consensus        14 ~vv~~~~~~w~~~~~~~~~~v~~~~---~gf~vv~----d~~v~v~f~Vtr~-~~~~a~C~Vr----A~~~d~aeVGrre   81 (112)
T PF14155_consen   14 VVVAGAVVAWFGYSQFGSPPVSAEV---IGFEVVD----DSTVEVTFDVTRD-PGRPAVCIVR----ALDYDGAEVGRRE   81 (112)
T ss_pred             HHHHHHHHhHhhhhhccCCCceEEE---EEEEECC----CCEEEEEEEEEEC-CCCCEEEEEE----EEeCCCCEEEEEE
Confidence            33344556666555 4556553333   3444433    1234444444433 6552211111    22467788884  


Q ss_pred             cccCC
Q 041808           94 DTVPS   98 (197)
Q Consensus        94 ~~vp~   98 (197)
                      ..+||
T Consensus        82 V~vp~   86 (112)
T PF14155_consen   82 VLVPP   86 (112)
T ss_pred             EEECC
Confidence            55666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.53
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.34
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	97.55

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.53  E-value=1.3e-06  Score=67.26  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=80.7

Q ss_pred             CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEE
Q 041808           32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIR  110 (197)
Q Consensus        32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~  110 (197)
                      +.|++++.++++.+++.       ..+++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.
T Consensus        43 ~~PeV~v~~v~~~~~~l-------~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~  114 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTR-------DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLD  114 (174)
T ss_dssp             CCCEEEEEEEEEEEECS-------SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEE
T ss_pred             CCCEEEEEEeEEecccc-------ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEE
Confidence            78999999999987754       3588999999999999 8999999999999999999999997 6899999999988


Q ss_pred             EeeeeeCchhhHHHhcccccCceEEEEEEEEE
Q 041808          111 GQSVNINGRSWKSLRSSISKNGTALLKVDFAT  142 (197)
Q Consensus       111 ~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~  142 (197)
                      .. +.++.....++.+++...+.++.+++...
T Consensus       115 Vp-v~v~~~~l~~~~~~l~~~~~i~Y~L~g~L  145 (174)
T 1yyc_A          115 VP-VKVAYSIAVSLMKDMCTDWDIDYQLDIGL  145 (174)
T ss_dssp             EE-EEESHHHHHHTCCCCCSSEEECEEEEEEE
T ss_pred             EE-EEEEHHHHHHHHHhcCCCCccceEEEEEE
Confidence            52 44544444555566653556666555533

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.34  E-value=6.5e-07  Score=67.51  Aligned_cols=103  Identities=14%  Similarity=0.147  Sum_probs=77.8

Q ss_pred             CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEE
Q 041808           32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIR  110 (197)
Q Consensus        32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~  110 (197)
                      +.|++++.++++.+++.       ...++.+.++++|||. ..+.++.++..+.-+|..++++..+ ++..++++++.+.
T Consensus        20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~   91 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALD   91 (151)
T ss_dssp             CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEE
T ss_pred             CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEE
Confidence            68999999999877643       4678999999999999 8999999999999999999999996 7899999999987


Q ss_pred             EeeeeeCchhhHHHhcccccCceEEEEEEEEEE
Q 041808          111 GQSVNINGRSWKSLRSSISKNGTALLKVDFATK  143 (197)
Q Consensus       111 ~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~~  143 (197)
                      .. +.++.....++..++...+.++.+++....
T Consensus        92 vp-v~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           92 IP-VVVPYSILFNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EC-CCEEHHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EE-EEEEHHHHHHHHHhcccCCcccEEEEEEEE
Confidence            42 233323333444444325567766655443

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=97.55  E-value=0.0014  Score=48.30  Aligned_cols=55  Identities=11%  Similarity=0.038  Sum_probs=49.3

Q ss_pred             cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeeccc-CCeeecCCCeeEEEE
Q 041808           56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTV-PSFDLDKNKDREIRG  111 (197)
Q Consensus        56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~t~~~~~  111 (197)
                      -...+.+.+++.|||. ..+.++.++..+...|..+|++.. ..+..++.+++.+..
T Consensus        16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v   71 (136)
T 3but_A           16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKF   71 (136)
T ss_dssp             SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEE
T ss_pred             cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEE
Confidence            4678999999999998 899999999999999999999875 689999999888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.39

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.39  E-value=2e-07  Score=68.48  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=78.3

Q ss_pred             eCCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeE
Q 041808           30 RPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDRE  108 (197)
Q Consensus        30 rP~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~  108 (197)
                      +-+.|++++.++++.++..       ..+++.+.++++|||. .++..+.++..++.+|..++++..+ ++..++++++.
T Consensus        18 ~~~kPev~l~~v~i~~v~~-------~~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~~   89 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTA   89 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred             CCCCCeEEEEEEEeeeccc-------ceEEEEEEEEEECCCC-CceeeeeEEEEEEECCEEEEeEecCCCcEEcCCCcEE
Confidence            4568999999999988744       4678999999999999 8999999999999999999998886 78899999999


Q ss_pred             EEEeeeeeCchhhHHHhcccccCceEEEEEEEEE
Q 041808          109 IRGQSVNINGRSWKSLRSSISKNGTALLKVDFAT  142 (197)
Q Consensus       109 ~~~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~  142 (197)
                      +... +.++.....++.+++...+.++.+++...
T Consensus        90 v~vp-v~v~~~~l~~~~~~i~~~~~i~Y~l~g~l  122 (151)
T d1xo8a_          90 LDIP-VVVPYSILFNLARDVGVDWDIDYELQIGL  122 (151)
T ss_dssp             EEEC-CCEEHHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEE-EEEEHHHHHHHHHhhccCCCccEEEEEEE
Confidence            8842 33333334455555542445555444433