Citrus Sinensis ID: 041816
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | 2.2.26 [Sep-21-2011] | |||||||
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.795 | 0.523 | 0.383 | 5e-68 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.785 | 0.482 | 0.365 | 1e-63 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.795 | 0.508 | 0.357 | 5e-61 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.795 | 0.494 | 0.362 | 2e-60 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.800 | 0.549 | 0.346 | 1e-59 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.810 | 0.516 | 0.354 | 1e-59 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.803 | 0.505 | 0.349 | 2e-59 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.762 | 0.480 | 0.357 | 4e-59 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.800 | 0.5 | 0.348 | 4e-59 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.803 | 0.503 | 0.344 | 5e-59 |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 258 bits (659), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 11/326 (3%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
+ER +S I I ++A +F M+ RP P L F+ F +A+TK ++ VL
Sbjct: 57 RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K+L G+ ++YT NI+INCFC+ + + VLG++++ + PD F +LIKGL E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
++ EA L ++ GC+P+V+TY++++NG+CR+G T +AL+L +M N K
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
+ TY+TIID LC++G +D A LF +M+ K I VVTYNSL+ G C A WN+ L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285
Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
L +M+ + + P+V+TFNV++D K GK+ EA+ L + MI RG++PN T++TLMDG+C+
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345
Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
R++ A + M C + ++
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTF 371
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 201/356 (56%), Gaps = 45/356 (12%)
Query: 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
SSG + I ++A +F M+ RP P + FN LF +AKTK Y+ VL+L K++ S
Sbjct: 61 SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
G+ +YT +I+INCFC+ ++S+ F +G+I++ + PD V F +L+ GLC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176
Query: 196 AAALFTKLKAFGCKPNVITYSTLINGL--------------------------------- 222
A L ++ G KP +IT +TL+NGL
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236
Query: 223 --CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
C++G T +A+ L +M N K + V Y+ IIDGLCK+G +D A LF +M+
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKDGSLDNAFNLFNEME 290
Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
K D++TYN+LI GFC A W++ LL +M+ + + P+VVTF+V++D K GK+
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
EA +LL+ M+ RG+ PNT T+++L+DGFC R+ A ++ M S GC + ++
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 196/361 (54%), Gaps = 46/361 (12%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
KER ++ I I N+A +F+ M+ RP P P+ FN L +A+TK YD VL
Sbjct: 39 KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 93
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K + G+ D+YT I+INC+C+ ++ F VLGR + + PD + F++L+ G C E
Sbjct: 94 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLING----------------------------- 221
R+ EA AL ++ +P+++T STLING
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 222 ------LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
LC++G++ +AL+LF +M N K + V Y+ +ID LCK+G D A L
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
F +M+ K I DVVTY+SLI G C W++ +L EM+ + + PDVVTF+ ++D K
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
GK+ EA L MI RG+ P+T T+++L+DGFC ++ A ++F M S GC+ + +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 396 Y 396
Y
Sbjct: 388 Y 388
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 46/361 (12%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
+ER +S G DI A ++A +F M++ RP P + F+ LF +AKTK YD VL+L
Sbjct: 57 RERLRS-GLVDIKA---DDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K++ G+ +LYT +I+INCFC+ ++ F +G+I++ + P+ + F++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
R+ EA L ++ G KP++IT +TL+NGLC +G A+ L ++M ++G C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225
Query: 251 PNTVT-----------------------------------YTTIIDGLCKEGFVDKAKEL 275
PN VT Y+ IIDGLCK G +D A L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
F +M+ K I +++TYN LI GFC A W++ LL +M+ + + P+VVTF+V++D K
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
GK+ EA L + MI RG+ P+T T+++L+DGFC ++ A ++ M S GC + +
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 396 Y 396
+
Sbjct: 406 F 406
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 198/367 (53%), Gaps = 50/367 (13%)
Query: 73 RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
R SSG GD I N +A +F M+ RP P + FN L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102
Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 170
V+SL +++ G+ +LYTYNILINCFC+ ++S +LG++++
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 171 ---------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
+ PD + FT+LI GL ++ EA AL ++ GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
PN++TY ++NGLC+ G +A NL +M + N V Y+T+ID LCK
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK------IEANVVIYSTVIDSLCKYRHE 276
Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
D A LF +M++K + P+V+TY+SLI C W++A+ LL +M+++ + P+VVTFN +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
+D K GK+ EA +L + MI R ++P+ T+S+L++GFC+ R++ AK +F M S C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396
Query: 390 KHTVFSY 396
V +Y
Sbjct: 397 FPNVVTY 403
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 194/355 (54%), Gaps = 34/355 (9%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
+ER +S I I ++A +F M RP P L F+ LF +A+TK YD VL L
Sbjct: 41 RERLRSG----IVDIKEDDAVDLFQEMTRSRPRPR-LIDFSRLFSVVARTKQYDLVLDLC 95
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K++ G+ +LYT +I+INC C+ ++S F +G+I++ + PD V F++LI GLC E
Sbjct: 96 KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK------ 244
R+ EA L ++ G KP +IT + L+NGLC G A+ L + M +
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215
Query: 245 ---FGVVCKP--------------------NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
V+CK + V Y+ IIDGLCK+G +D A LF +M+
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
K D++ Y +LI GFCYA W++ LL +M+ + + PDVV F+ ++D K GK+ E
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
A L + MI RG++P+T T+++L+DGFC +++ A + M S GC + ++
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 51/369 (13%)
Query: 72 ERCKSSGQGDITAITPN---------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
ER +S GD I N +A +F M+ RP P + FN L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNK 98
Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
++ V+SL +++ + G+ DLYTY+I INCFC+ ++S VL ++++ + PD V +S
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 183 LIKGLCAESRIM-----------------------------------EAAALFTKLKAFG 207
L+ G C RI EA AL ++ G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
C+P+++TY T++NGLC+ G +ALNL +M K N V + TIID LCK
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYR 272
Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
V+ A +LF +M+ K I P+VVTYNSLI+ C W++A+ LL M+++ + P+VVTFN
Sbjct: 273 HVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFN 332
Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
++D K GK+ EA +L E MI R ++P+T T++ L++GFC+ R++ AK++F M S
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392
Query: 388 GCKHTVFSY 396
C + +Y
Sbjct: 393 DCLPNIQTY 401
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 42/344 (12%)
Query: 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
++A +F M+ RP P + FN L +AK +D V+SL +R+ + + DLY+YNI
Sbjct: 62 DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-------------- 193
LINCFC+ ++ VLG++++ + PD V +SL+ G C RI
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 194 ---------------------MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
EA AL ++ A GC+P++ TY T++NGLC+ G +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
+L ++M G + + V YTTIID LC V+ A LF +M +K I P+VVTYN
Sbjct: 241 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
SLI C W++A+ LL +M+++ + P+VVTF+ ++D K GK+ EA +L + MI R
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
++P+ T+S+L++GFC+ R++ AK +F M S C V +Y
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 197/367 (53%), Gaps = 50/367 (13%)
Query: 73 RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
R SSG GD I N +A +F M+ RP P + FN L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFD 102
Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 170
V+SL +++ + LYTYNILINCFC+ ++S +LG++++
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 171 ---------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
+ PD + FT+LI GL ++ EA AL ++ GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
PN++TY ++NGLC+ G T +ALNL +M + + V + TIID LCK V
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 276
Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
D A LF +M+ K I P+VVTY+SLI C W++A+ LL +M+++ + P++VTFN +
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336
Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
+D K GK EA +L + MI R ++P+ T+++L++GFC+ R++ AK++F M S C
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396
Query: 390 KHTVFSY 396
V +Y
Sbjct: 397 FPDVVTY 403
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 198/369 (53%), Gaps = 51/369 (13%)
Query: 72 ERCKSSGQGDITAITPN---------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
ER +S GD I N +A +F M+ RP P + FN L +AK
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNK 98
Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
++ V+SL +++ + G+ DLYTY+I INCFC+ ++S VL ++++ + PD V +S
Sbjct: 99 FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158
Query: 183 LIKGLCAESRI-----------------------------------MEAAALFTKLKAFG 207
L+ G C RI EA AL ++ G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218
Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
C+P+++TY T++NGLC+ G +AL+L ++M G + + V Y TIIDGLCK
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYK 272
Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
+D A LF +M +K I PDV TY+SLI C W++A+ LL +M+++ + P+VVTF+
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS 332
Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
++D K GK+ EA +L + MI R ++P+ T+S+L++GFC+ R++ AK +F M S
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392
Query: 388 GCKHTVFSY 396
C V +Y
Sbjct: 393 DCFPNVVTY 401
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.906 | 0.572 | 0.513 | 1e-105 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.929 | 0.595 | 0.465 | 6e-91 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.818 | 0.515 | 0.501 | 3e-88 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.823 | 0.538 | 0.491 | 5e-86 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.810 | 0.530 | 0.481 | 1e-85 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.803 | 0.532 | 0.479 | 3e-81 | |
| 147768816 | 653 | hypothetical protein VITISV_031897 [Viti | 0.767 | 0.465 | 0.450 | 8e-73 | |
| 225452994 | 588 | PREDICTED: putative pentatricopeptide re | 0.767 | 0.517 | 0.450 | 9e-73 | |
| 147787958 | 671 | hypothetical protein VITISV_021776 [Viti | 0.767 | 0.453 | 0.453 | 1e-71 | |
| 298204849 | 442 | unnamed protein product [Vitis vinifera] | 0.767 | 0.687 | 0.446 | 1e-71 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/376 (51%), Positives = 253/376 (67%), Gaps = 17/376 (4%)
Query: 21 RCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQG 80
RC SS F H +P S + D + A DR LE FLK CKS
Sbjct: 23 RCKLSSLFEHPHRPISPGPISLTKDTVSNAP----------DRGQLENFLKSNCKSG--- 69
Query: 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
I +EAF +F+++++M+P+PP ++SFN L G +AK K Y V+SL+KR++ GL P
Sbjct: 70 ---HIKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125
Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
D T NILINC+C + +V G VLG +LR +P+ V FTSL+KGLC SRI EA L
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185
Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
K+ G +PNV+TY TL+NGLC TG+T++A+ L EEM NGNG FGV KPN V Y TII
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245
Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
D LCK+G +DK KELFL+MK + I+PDVV Y+S+IHG C+ W A L EM+D+GV
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305
Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
P+VVTFNV++D LCK GKM+EA+ LL+LMI RG +P+T T++TL+DGFCL GR++ A++L
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365
Query: 381 FVSMESMGCKHTVFSY 396
FVSMES G + SY
Sbjct: 366 FVSMESKGIETDAVSY 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 175/376 (46%), Positives = 240/376 (63%), Gaps = 8/376 (2%)
Query: 25 SSSFPHTRKPKSSISKNEPSD-PTTTAKLKESLRLTV---KDRASLEQFLKERCKSSGQG 80
S SF P S+ S PS P T++ + L ++ S L ++ G
Sbjct: 9 SPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTG 68
Query: 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
+ITAI +AF FD M+ P PP ++SFN L G LAK HY + SL+ + GL P
Sbjct: 69 NITAI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124
Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
DL+T +IL NC C + RVS + ILR + P+ V +T+LIKGLC E RI EA LF
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184
Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
+++ GC PN +TY TLI GLC+TG+ +AL L +EM N ++GV CKP +TY+ II
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244
Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
DGLCK G D+AKELF +MK + + PDV++Y++LIHGFC A W+++ L EM+DQGVQ
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304
Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
PD+VTF+V++D LCK GK+ EA +LLE+MI RG+ PN T+++L+DGFC+ G +N A+EL
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364
Query: 381 FVSMESMGCKHTVFSY 396
F+SM S G + SY
Sbjct: 365 FLSMPSKGLEPDEISY 380
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 166/331 (50%), Positives = 225/331 (67%), Gaps = 7/331 (2%)
Query: 66 LEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
LEQFL+ CKS GD T +EA F+ M++M+ +P L+ FN LFG LAK K Y
Sbjct: 73 LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLH 125
Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
V+S+ R+NS GL + + NIL+NC C + RV GFVV G ILR + P+ FT+L+K
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185
Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
GLC E +I EA +F + F C+P+ IT LI+GLCRTG+T AL L E M NGN F
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245
Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
G+ CKP V+Y+ IID LCK+G V++AKE F++MK+K I P+VVTY SL+HG C A++W
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305
Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
EA L IEM+D G+ PDVVTF+V++ LCK GK+ EAS L +LM+ R V P+T T++ L+
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365
Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+G+CL G V+ K++F+SM + C+H SY
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 221/334 (66%), Gaps = 8/334 (2%)
Query: 63 RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
+ L FL CK+ G+ITA +AF F M+ P+PP L+SF L LAK KH
Sbjct: 60 QQQLSMFL-HNCKT---GNITA---TQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKH 111
Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
Y V L+ ++ +G+ PD T NIL+NC C + RV G V+ ILR + PD V +T+
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171
Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
LIKGLC E RI +AA LFT+++ GC PN ITY TL+ GLCRTG+ +AL L +EM N +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231
Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
+G+ KP ++Y+ IID LCK+ D+A++LF +MK + + P V++Y SLIHGFC
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG 291
Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
W EA L EM++QGVQP+VVTFNV++D LCK GK+ EA LLE+MI RG+ PN T++
Sbjct: 292 KWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351
Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+L++GFCL G +N A+ELFVSM S GC+ V Y
Sbjct: 352 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 217/328 (66%), Gaps = 7/328 (2%)
Query: 69 FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
F CK+ G++TA A F M+ P+P L+SFN L LAK KHY V S
Sbjct: 38 FFLRHCKT---GNVTA---THALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFS 90
Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
L+ ++ +GL D T NIL+NC C + R+ GF ILR ++P+ V + +LIKGLC
Sbjct: 91 LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150
Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
E RI EA LF +++ GC P+V+TY TLI GLC TG+ +AL L +EM N ++ +
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEIN 210
Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
CKPN +TY I+DGLCK G D+AK+LF +MK + + P +++YNSLIHGFC A W E+
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK 270
Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
LL EM+DQG+QPD+VTFNV++D LCK GK+ EA +LL +MI G+ P+ T+++L++GF
Sbjct: 271 RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330
Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
C+ G +N A+ELFVSM S GC+ V SY
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISY 358
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 218/334 (65%), Gaps = 16/334 (4%)
Query: 63 RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
+ L FL CK+ G+ITAI +AF F M+ P+PP L+SF L LAK KH
Sbjct: 60 QQQLSMFL-HNCKT---GNITAI---QAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKH 111
Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
Y V L+ ++ +G+ PD T NIL+NC C + RV G V+ ILR + PD V +T+
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171
Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
LIKGLC E RI +AA LFT+++ GC PN ITY TL+ GLCRTG+ +AL L +EM N +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231
Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
+G+ KP ++Y+ IID LCK+ D+A++LF +MK + + P V++Y SL+
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM------- 284
Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
W EA L EM++QGVQP+VVTFNV++D LCK GK+ EA LLE+MI RG+ PN T++
Sbjct: 285 -WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343
Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+L++GFCL G +N A+ELFVSM S GC+ V Y
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 377
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 194/311 (62%), Gaps = 7/311 (2%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
T +EA F+ ML+ +P PP FN L +AKTKH+ T+LSL ++++S G+ PD+YT
Sbjct: 50 TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108
Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
I+IN C + RV F L +IL+ PDA FT+LI+GLC E +I EA LF K+
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G+T A+ L M GN C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222
Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
+ V +A +F +M K I+P++VTYNSLIHG C +W L+ EM+D + PDV T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
N ++D LCK G + EA ++++MI RGV PN T++ LMDG CL V+ A ++F +M
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 386 SMGCKHTVFSY 396
C V SY
Sbjct: 343 HKDCVANVISY 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 194/311 (62%), Gaps = 7/311 (2%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
T +EA F+ ML+ +P PP FN L +AKTKH+ T+LSL ++++S G+ PD+YT
Sbjct: 50 TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108
Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
I+IN C + RV F L +IL+ PDA FT+LI+GLC E +I EA LF K+
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168
Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G+T A+ L M GN C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222
Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
+ V +A +F +M K I+P++VTYNSLIHG C +W L+ EM+D + PDV T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282
Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
N ++D LCK G + EA ++++MI RGV PN T++ LMDG CL V+ A ++F +M
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 386 SMGCKHTVFSY 396
C V SY
Sbjct: 343 HKDCVANVISY 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 191/311 (61%), Gaps = 7/311 (2%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
T + A F+ ML M+P PP FN L +AK KH+ T+LSL +++S G+ P++YT
Sbjct: 41 TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99
Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
+ILIN FC + RV F VL +IL+ PD FT+LI+G+C E +I EA LF K+
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159
Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
G +P+V+TY TLINGLC+ G+T A+ L M N C+PN Y TIID LCK
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 213
Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
+ V +A LF +M K I+PD+ TYNSLIH C +W LL EM+D + PDVV+
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273
Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
FN ++D LCK GK+ EA +++ MI RGV PN T++ LMDG CL ++ A ++F +M
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333
Query: 386 SMGCKHTVFSY 396
GC V SY
Sbjct: 334 CKGCMPNVISY 344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 193/311 (62%), Gaps = 7/311 (2%)
Query: 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
T ++A F+ +L+M P PP + F L +AK KHY TVLSL +++S G+ P++YT
Sbjct: 25 TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 83
Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
NILIN FC + RV F VL +IL+ PD FT+LI+GLC E +I EA LF K+
Sbjct: 84 NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 143
Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
G +PNV+TY TLINGLC+ G+T A+ L M GN C+P+ V YT+IID LCK
Sbjct: 144 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 197
Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
+ V +A LF QM + I+PD+ TY SL+H C +W LL +M++ + PDVV
Sbjct: 198 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 257
Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
F+ ++D LCK GK+ EA ++++MI RGV P+ T++TLMDG CL ++ A ++F M
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 317
Query: 386 SMGCKHTVFSY 396
G V SY
Sbjct: 318 RKGFAPDVISY 328
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.795 | 0.494 | 0.365 | 9.9e-55 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.785 | 0.482 | 0.364 | 6.3e-53 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.717 | 0.462 | 0.362 | 6.3e-53 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.795 | 0.508 | 0.361 | 1e-52 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.800 | 0.578 | 0.342 | 9.2e-52 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.762 | 0.480 | 0.368 | 1.9e-51 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.717 | 0.450 | 0.362 | 3.1e-51 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.717 | 0.451 | 0.358 | 4e-51 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.762 | 0.573 | 0.346 | 4e-51 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.800 | 0.549 | 0.355 | 1.7e-50 |
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 119/326 (36%), Positives = 192/326 (58%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
+ER +S G DI A ++A +F M++ RP P + F+ LF +AKTK YD VL+L
Sbjct: 57 RERLRS-GLVDIKA---DDAIDLFRDMIHSRPLPTVI-DFSRLFSAIAKTKQYDLVLALC 111
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K++ G+ +LYT +I+INCFC+ ++ F +G+I++ + P+ + F++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
R+ EA L ++ G KP++IT +TL+NGLC +G A+ L ++M ++G C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
PN VTY +++ +CK G A EL +M+++NI D V Y+ +I G C + A L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
EM +G+ +++T+N+++ C G+ D+ ++LL MI R +NPN TFS L+D F
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
G++ A+EL M G +Y
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITY 371
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 117/321 (36%), Positives = 181/321 (56%)
Query: 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
SSG + I ++A +F M+ RP P + FN LF +AKTK Y+ VL+L K++ S
Sbjct: 61 SSG---LVGIKADDAVDLFRDMIQSRPLPTVI-DFNRLFSAIAKTKQYELVLALCKQMES 116
Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
G+ +YT +I+INCFC+ ++S+ F +G+I++ + PD V F +L+ GLC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176
Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
A L ++ G KP +IT +TL+NGLC G A+ L + M G F +PN VT
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE-TG-F----QPNEVT 230
Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
Y +++ +CK G A EL +M+++NI D V Y+ +I G C + A L EM
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290
Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
+G + D++T+N ++ C G+ D+ ++LL MI R ++PN TFS L+D F G++
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 376 HAKELFVSMESMGCKHTVFSY 396
A +L M G +Y
Sbjct: 351 EADQLLKEMMQRGIAPNTITY 371
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 105/290 (36%), Positives = 172/290 (59%)
Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
L ++N++ CL + L++ ++ G P + T N L+N FC R+S ++
Sbjct: 100 LYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVD 159
Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
+++ + PD V FT+L+ GL ++ EA AL ++ GC+P+++TY +INGLC+ G
Sbjct: 160 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRG 219
Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
+ALNL +M G + + V Y+T+ID LCK VD A LF +M +K I P
Sbjct: 220 EPDLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRP 273
Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
DV TY+SLI C W++A+ LL +M+++ + P+VVTFN ++D K GK+ EA +L
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 333
Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+ MI R ++PN T+++L++GFC+ R++ A+++F M S C V +Y
Sbjct: 334 DEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 118/326 (36%), Positives = 186/326 (57%)
Query: 71 KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
KER ++ I I N+A +F+ M+ RP P P+ FN L +A+TK YD VL
Sbjct: 39 KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 93
Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
K + G+ D+YT I+INC+C+ ++ F VLGR + + PD + F++L+ G C E
Sbjct: 94 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153
Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
R+ EA AL ++ +P+++T STLINGLC G AL L + M ++G +
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV----EYGF--Q 207
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
P+ VTY +++ LCK G A +LF +M+++NI VV Y+ +I C +++A L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
EM +G++ DVVT++ ++ LC +GK D+ +++L MI R + P+ TFS L+D F
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
G++ AKEL+ M + G +Y
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITY 353
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 112/327 (34%), Positives = 183/327 (55%)
Query: 70 LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
L+ER + DI N+A +F M+ RP P + FN L + K K YD V+SL
Sbjct: 52 LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISL 107
Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
K++ G+ DLYT+NI+INCFC +VS +LG++L+ + PD V SL+ G C
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167
Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
+R+ +A +L K+ G KP+++ Y+ +I+ LC+T A + F+E+ + G+
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIE----RKGI-- 221
Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
+PN VTYT +++GLC A L M K I P+V+TY++L+ F EA
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281
Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
L EM+ + PD+VT++ +++ LC + ++DEA+++ +LM+ +G + +++TL++GFC
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341
Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
RV +LF M G +Y
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTY 368
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 114/309 (36%), Positives = 177/309 (57%)
Query: 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
++A +F M+ RP P + FN L +AK +D V+SL +R+ + + DLY+YNI
Sbjct: 62 DDAVDLFGEMVQSRPLPS-IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
LINCFC+ ++ VLG++++ + PD V +SL+ G C RI EA AL ++
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
+PN +T++TLI+GL A+ L + M G C+P+ TY T+++GLCK G
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMV-ARG-----CQPDLFTYGTVVNGLCKRG 234
Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
+D A L +M+ I DVV Y ++I C + N+A L EM ++G++P+VVT+N
Sbjct: 235 DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294
Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
++ LC G+ +ASRLL MI R +NPN TFS L+D F G++ A++L+ M
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 388 GCKHTVFSY 396
+F+Y
Sbjct: 355 SIDPDIFTY 363
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 105/290 (36%), Positives = 171/290 (58%)
Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
L ++++L C + L++ ++ G PD+ T N L+N FC R+S ++G
Sbjct: 116 LYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVG 175
Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
+++ + PD+ F +LI GL +R EA AL ++ GC+P+++TY ++NGLC+ G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235
Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
+AL+L ++M G +P V Y TIID LC V+ A LF +M +K I P
Sbjct: 236 DIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
+VVTYNSLI C W++A+ LL +M+++ + P+VVTF+ ++D K GK+ EA +L
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349
Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+ MI R ++P+ T+S+L++GFC+ R++ AK +F M S C V +Y
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399
|
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| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 104/290 (35%), Positives = 171/290 (58%)
Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
L ++++ C + L++ ++ G PD+ T + L+N +C R+S ++
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177
Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
+++ + PD FT+LI GL ++ EA AL ++ GC+P+++TY T++NGLC+ G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237
Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
+ALNL +M K N V + TIID LCK V+ A +LF +M+ K I P
Sbjct: 238 DIDLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRP 291
Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
+VVTYNSLI+ C W++A+ LL M+++ + P+VVTFN ++D K GK+ EA +L
Sbjct: 292 NVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLH 351
Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
E MI R ++P+T T++ L++GFC+ R++ AK++F M S C + +Y
Sbjct: 352 EEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401
|
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| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 107/309 (34%), Positives = 176/309 (56%)
Query: 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
NEA +F +M+ RP P + F L +AK K +D V++L L G+ DLYT N+
Sbjct: 54 NEALDLFTHMVESRPLPS-IIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
L+NCFC+ + LG++++ F PD V FTSLI G C +R+ EA ++ ++ G
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
KP+V+ Y+T+I+ LC+ GH AL+LF++M N +G+ +P+ V YT++++GLC G
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN----YGI--RPDVVMYTSLVNGLCNSG 226
Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
A L M + I PDV+T+N+LI F + +A L EM+ + P++ T+
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286
Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
+++ C G +DEA ++ LM +G P+ +++L++GFC +V+ A ++F M
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 388 GCKHTVFSY 396
G +Y
Sbjct: 347 GLTGNTITY 355
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 118/332 (35%), Positives = 185/332 (55%)
Query: 73 RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
R SSG GD I N +A +F M+ RP P + FN L +AK K +D
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPS-IFEFNKLLSAIAKMKKFD 102
Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
V+SL +++ G+ +LYTYNILINCFC+ ++S +LG++++ + P V +SL+
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
G C RI +A AL ++ G +P+ IT++TLI+GL A+ L + M G
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RG- 220
Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
C+PN VTY +++GLCK G +D A L +M+ I +VV Y+++I C
Sbjct: 221 ----CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276
Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
++A L EM ++GV+P+V+T++ ++ LC + +ASRLL MI R +NPN TF+ L
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336
Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+D F G++ A++L+ M +F+Y
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 396 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-24 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 78/317 (24%), Positives = 139/317 (43%), Gaps = 27/317 (8%)
Query: 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
EAF + N P L++FN+L A ++ D L + + + GL D Y L
Sbjct: 424 EAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
I+ K G+V F V ++ + + F +LI G CA + + KAFG
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG-CARAGQVA--------KAFGA 529
Query: 209 ---------KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
KP+ + ++ LI+ ++G A ++ EM P+ +T +
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI----DPDHITVGAL 585
Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
+ G VD+AKE++ + + NI Y ++ DW+ A + +M +GV
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
+PD V F+ ++D G +D+A +L+ +G+ T ++S+LM A E
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 380 LFVSMESMGCKHTVFSY 396
L+ ++S+ + TV +
Sbjct: 706 LYEDIKSIKLRPTVSTM 722
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 1e-20
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
P+ VTY T+IDG CK+G V++A +LF +MK + I P+V TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 7e-20
Identities = 73/287 (25%), Positives = 130/287 (45%), Gaps = 47/287 (16%)
Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPD 176
AK+ D + +F + + G+ +++T+ LI+ + G+V+ F G I+RS PD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG-IMRSKNVKPD 541
Query: 177 AVAFTSLIKGLCAES-RIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTG------- 226
V F +LI C +S + A + ++KA P+ IT L+ G
Sbjct: 542 RVVFNALISA-CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 227 ----------------HTIV------------ALNLFEEMANGNGKFGVVCKPNTVTYTT 258
+TI AL+++++M K GV KP+ V ++
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK----KKGV--KPDEVFFSA 654
Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
++D G +DKA E+ + + I V+Y+SL+ A +W +A L ++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
++P V T N ++ LC+ ++ +A +L M G+ PNT T+S L+
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 1e-16
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
PDVVT+N ++D CK GK++EA +L M RG+ PN T+S L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 1e-16
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
PDVVTYN+LI G+C EA L EM +G++P+V T+++++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-15
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
P+V+TY+TLI+G C+ G AL LF EM KPN TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 85/394 (21%), Positives = 142/394 (36%), Gaps = 57/394 (14%)
Query: 34 PKSSISKNEPSDPTTTAKLKESLR-LTVKDRASLEQFLKERCKSSGQG----------DI 82
SI +E D + +L S R +++ R + F C S QG I
Sbjct: 7 RYQSIRLDEIRDSLSNPRLLHSPRKFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKPEPI 66
Query: 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-D 141
D + + L C + L LF+ L + F
Sbjct: 67 RIEVSESKDARLDDTQIRKSGVSLCSQIEKLVAC----GRHREALELFEILEAGCPFTLP 122
Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
TY+ L+ + + V + S F PD ++ +++A LF
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM------------------ANGNG 243
++ N+ ++ T+I GL G+ A LF EM + G G
Sbjct: 183 EMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 244 -------------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
K GVV +T +ID K G ++ A+ +F M +K V
Sbjct: 239 SARAGQQLHCCVLKTGVV--GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVA 292
Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
+NS++ G+ EA CL EM D GV D TF++++ + ++ A + +I
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
G + + L+D + GR+ A+ +F M
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 4e-14
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
PD V + +LI G C + ++ EA LF ++K G KPNV TYS LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 71/328 (21%), Positives = 125/328 (38%), Gaps = 40/328 (12%)
Query: 74 CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
C SG+ D F +F M+N T L+ GC A+ + +
Sbjct: 482 CAKSGKVDAM-------FEVFHEMVNAGVEANVHTFGALIDGC-ARAGQVAKAFGAYGIM 533
Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAES 191
S + PD +N LI+ + G V F VL + PD + +L+K
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM------------- 238
++ A ++ + + K Y+ +N + G AL+++++M
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 239 ----ANGNGK-----FGVV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
G+ F ++ K TV+Y++++ KA EL+ +K
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
+ P V T N+LI C N +A +L EM G+ P+ +T+++++ + D
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCL 370
LL G+ PN + G CL
Sbjct: 774 LDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 40/320 (12%)
Query: 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
P++A + M SP +T ++L C A D + L + GL + N
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSAC-ACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
LI + K + V I D +++TS+I GL +R EA F ++
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483
Query: 207 GCKPNVITYSTLINGLCRTG-------------HTIVAL-----NLFEEMANGNGKFGV- 247
KPN +T ++ R G T + N ++ G+
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 248 -----VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
+ + V++ ++ G G A ELF +M + +NPD VT+ SL+ C +
Sbjct: 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS 602
Query: 303 DWNEANCLLIEMMDQ--GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
M++ + P++ + ++D L + GK+ EA + M + P+ +
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAV 659
Query: 361 FSTLMDGFCLTGRVNHAKEL 380
+ L++ C R++ EL
Sbjct: 660 WGALLNA-C---RIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 24/279 (8%)
Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY-NILINCF----CKMGRVSHG 161
L S+N+L G AK ++D L L+ R+ G+ PD+YT+ +L C GR H
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
VV R F D +LI ++ A +F ++ C I+++ +I+G
Sbjct: 212 HVV-----RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISG 262
Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
G + L LF M + P+ +T T++I G +E+ +
Sbjct: 263 YFENGECLEGLELFFTM------RELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
DV NSLI + W EA + M + D V++ ++ KNG D+
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDK 372
Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
A LM V+P+ T ++++ G ++ +L
Sbjct: 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.1 bits (142), Expect = 2e-11
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
KP+ VTY T+IDGLC+ G VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 2e-10
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
G KP+V+TY+TLI+GLCR G A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 68/271 (25%), Positives = 115/271 (42%), Gaps = 34/271 (12%)
Query: 124 DTVLSLFKRLNSTGLFPDLYTY-NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
D L + + + PD T ++L C C +G + G + R V +
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACAC-LGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLINGLCRTGHTIVALNLFEEMAN 240
LI+ + ++ + ++ A L+ F P +VI+++++I GL AL F +M
Sbjct: 430 LIE-MYSKCKCIDKA-----LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML- 482
Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF-- 298
+ KPN+VT + + G + KE+ + I D N+L+ +
Sbjct: 483 ------LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 299 C----YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
C YA WN+ N + DVV++N+++ +GK A L M+ GV
Sbjct: 537 CGRMNYA--WNQFNS---------HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
NP+ TF +L+ +G V E F SME
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
+G++PDVVT+N ++D LC+ G++DEA LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
++N L K + L LF + G+ P++YTY+ILI+ CK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 64/309 (20%), Positives = 111/309 (35%), Gaps = 58/309 (18%)
Query: 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS---- 135
G + A EAF +F M P T +L ++L+
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR-----AGQQLHCCVLK 252
Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
TG+ D + LI+ + K G + V + VA+ S++ G E
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEE 308
Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
A L+ +++ G + T+S +I R L ++ G + G + V
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA----LLEHAKQAHAGLIRTGF--PLDIVA 362
Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
T ++D K G ++ A+ +F +M KN+ +++N+LI G+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGN--------------- 403
Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
+G+ +A + E MI GV PN TF ++ +G
Sbjct: 404 --------------------HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 376 HAKELFVSM 384
E+F SM
Sbjct: 444 QGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-08
Identities = 22/35 (62%), Positives = 28/35 (80%)
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
VTY T+IDGLCK G V++A ELF +MK++ I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
P+ T++TL+DG+C G+V A +LF M+ G K V++Y
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-07
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
K + PDVVTYN+LI G C A +EA LL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
VTY ++I G CK G +++A ELF +MK+K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
+G+ P+ T++TL+DG C GRV+ A EL ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVL 165
GL PD+ TYN LI+ C+ GRV +L
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
VTYN+LI G C A EA L EM ++G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 49/220 (22%), Positives = 103/220 (46%), Gaps = 15/220 (6%)
Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
TG D+ L++ + K GR+ V R+ R + +++ +LI G R +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTK 409
Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
A +F ++ A G PN +T+ +++ +G + +F+ M+ + KP +
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-----IKPRAMH 464
Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
Y +I+ L +EG +D+A + ++ P V + +L+ C + E L E +
Sbjct: 465 YACMIELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTA-CRIHKNLELGRLAAEKL 520
Query: 316 DQGVQPDVVTFNVIMDELCKN-GKMDEASRLLELMILRGV 354
G+ P+ + V++ L + G+ EA++++E + +G+
Sbjct: 521 -YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
VT+N ++D LCK G+++EA L + M RG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 2e-05
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
TYN LI+ CK GRV + + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV 354
VT+N ++ CK GK++EA L + M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 8e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
T++TL+DG C GRV A ELF M+ G +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
VTYNSLI G+C A EA L EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
T+++L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 213 ITYSTLINGLCRTGHTIVALNLFEEM 238
+TY++LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
+ T+N ++ L K G D A +LE M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 5e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
+ TYN+L+ A D + A +L EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 43/237 (18%), Positives = 93/237 (39%), Gaps = 24/237 (10%)
Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA-----AALFTKLKAFG 207
C G++ +L + D A+ +L + LC R +E + + + G
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
+ + +++ R G + A +F +M + + ++ ++ G K G
Sbjct: 121 VRLG----NAMLSMFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAG 166
Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
+ D+A L+ +M + PDV T+ ++ D + ++ G + DV N
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
++ K G + A + + M R + +++ ++ G+ G ELF +M
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTM 279
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA-SRL 345
D+ ++N L+ G+ A ++EA CL M+ GV+PDV TF ++ C G D A R
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL-RTC-GGIPDLARGRE 208
Query: 346 LELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
+ ++R G + + L+ + G V A+ +F M C
Sbjct: 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
V + +LI GLC R+ EA LF ++K G +P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
TY ++ L K G D A + +MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 213 ITYSTLINGLCRTGHTIVALNLFEEM 238
+TY+TLI+GLC+ G AL LF+EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.79 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.79 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.69 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.69 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.34 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.24 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.13 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.86 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.84 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.83 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.77 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.74 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.54 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.44 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.44 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.23 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.17 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.16 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.09 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.06 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.99 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.97 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.97 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.95 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.93 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.89 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.86 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.82 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.81 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.45 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.43 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.4 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.4 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.38 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.35 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.32 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.1 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.94 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.85 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.77 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.65 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.57 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.54 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.47 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.32 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.2 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.16 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.11 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.1 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.01 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.96 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.77 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.73 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.71 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.6 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.49 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.31 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.21 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.11 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.94 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.37 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.1 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.91 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.45 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.42 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.17 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.44 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.48 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.33 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.22 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.7 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.47 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.02 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.82 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.71 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.96 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.92 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.91 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.25 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.56 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.14 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 86.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.19 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.75 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.55 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.8 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.58 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.57 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.49 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.08 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.06 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.98 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.69 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.51 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.3 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 82.06 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.94 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 81.83 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.8 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.46 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.07 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.88 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 80.83 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 80.67 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.18 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=412.10 Aligned_cols=310 Identities=21% Similarity=0.327 Sum_probs=273.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
++++.|++++|.++|+.|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 456778888999999999888876 7888999999999999999999999999988888889999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA--FGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998888889999999999999999999999999998876 57788888999999999999999999999999
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
|.+.+ ++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.
T Consensus 605 M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 605 IHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88887 788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888776
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=407.98 Aligned_cols=311 Identities=22% Similarity=0.360 Sum_probs=303.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.++++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 4577899999999999999999877 899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 159 SHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 159 ~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999986 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 639 eM~~~G------v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 639 DMKKKG------VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHcC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999998 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998775
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=368.55 Aligned_cols=301 Identities=19% Similarity=0.314 Sum_probs=205.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++++|+++|++|...++..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34445555555555555444333455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH-------------------------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 041816 162 FVVLGRI-------------------------------LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210 (396)
Q Consensus 162 ~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (396)
.++|++| .+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~ 257 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence 5555554 444444444444444444444444444444444444555556
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
|..+|+.|+.+|++.|++++|.++|++|. ++|..+||.||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 66677888889999999999999998884 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.|+++|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999888888777777777777777777777777777664 3566666667666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 371 TGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
+|+.++|.++|++|.+.|+.||.+||
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67767777777666666666666664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=365.03 Aligned_cols=298 Identities=19% Similarity=0.320 Sum_probs=243.0
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
.+.+.|++++|.++|+.|.+ |+..+||.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 46788999999999999843 7899999999999999999999999999999999999998888888888888888
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888877753 477788888888888888888888888887
Q ss_pred hcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 041816 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 319 (396)
+.+ +.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 318 ~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 318 DSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 777 67788888888888888888888888888887777777877888888888888888888888777743
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCcccC
Q 041816 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHTVFSY 396 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~ty 396 (396)
||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 677778888888888888888888888887777778888888888888888888888888877765 5777777665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=363.13 Aligned_cols=303 Identities=23% Similarity=0.319 Sum_probs=221.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+++.|++++|.++|+.|.. +|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 346788999999999999843 688899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888888886 357778888888888888888888888888
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ- 317 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~- 317 (396)
.+.+ +.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 381 ~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 381 EQDN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHhC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 7776 566666666666666666666666666666666555555555555555555555555554444443221
Q ss_pred -----------------------------CCCC-----------------------------------------------
Q 041816 318 -----------------------------GVQP----------------------------------------------- 321 (396)
Q Consensus 318 -----------------------------~~~p----------------------------------------------- 321 (396)
++.|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 2333
Q ss_pred ------------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 322 ------------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 322 ------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 33445555555555556666666666666666666666666666666666666666666666
Q ss_pred HH-hCCCCCCcccC
Q 041816 384 ME-SMGCKHTVFSY 396 (396)
Q Consensus 384 m~-~~g~~p~~~ty 396 (396)
|. +.|+.|+..+|
T Consensus 615 M~~~~gi~P~~~~y 628 (857)
T PLN03077 615 MEEKYSITPNLKHY 628 (857)
T ss_pred HHHHhCCCCchHHH
Confidence 65 45666655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=357.24 Aligned_cols=303 Identities=21% Similarity=0.263 Sum_probs=233.8
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.++++.|++++|+++|++|...|.. ||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 4577889999999999999988876 788888888888888888888888888888878777777777777777777777
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+
T Consensus 340 ~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 340 GEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred HHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 77777777664 34666667777777777777777777766666666666666666666666666666666666666
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHH-------------------------------HHHHHHHhhCCC---
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA-------------------------------KELFLQMKDKNI--- 284 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------------------~~~~~~m~~~~~--- 284 (396)
.+.+ +.|+..+|+.||.+|++.|++++| .++|++|.. ++
T Consensus 416 ~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 416 ERKG------LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHhC------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 5555 344444444444444444444444 444444432 12
Q ss_pred --------------------------------------------------------------CCChhhHHHHHHHHHhcC
Q 041816 285 --------------------------------------------------------------NPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 285 --------------------------------------------------------------~p~~~~~~~li~~~~~~~ 302 (396)
.||..+||++|.+|++.|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 345667888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI-LRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6799999999999999999999999999999
Q ss_pred HHHHhCCCCCCcccC
Q 041816 382 VSMESMGCKHTVFSY 396 (396)
Q Consensus 382 ~~m~~~g~~p~~~ty 396 (396)
++|. ++||..+|
T Consensus 649 ~~m~---~~pd~~~~ 660 (857)
T PLN03077 649 NKMP---ITPDPAVW 660 (857)
T ss_pred HHCC---CCCCHHHH
Confidence 9984 78887765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=194.43 Aligned_cols=301 Identities=16% Similarity=0.129 Sum_probs=255.9
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD---LYTYNILINCFCKMG 156 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g 156 (396)
.+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999765 4778899999999999999999999999987542222 256788899999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCChHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~ 232 (396)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++++.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999864 34788899999999999999999999999988753322 224567788889999999999
Q ss_pred HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++
T Consensus 201 ~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 201 ALLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998864 445678888999999999999999999999876543335678899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCC
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL---TGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 389 (396)
++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 99886 467677789999999999999999999999885 7899999988887765 5699999999999999888
Q ss_pred CCCcc
Q 041816 390 KHTVF 394 (396)
Q Consensus 390 ~p~~~ 394 (396)
.|+..
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 87753
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=190.09 Aligned_cols=291 Identities=15% Similarity=0.125 Sum_probs=155.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+.+++.+....+ .+...|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAP--DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 334455666666666666655433 355566666666666666666666666665543 22445555666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|..+++++.+... .+...+..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666665432 245555555556666666666666665555543 234445555555555555555555555555
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
.... |+..++..++.++.+.|++++|.+.++.+.+.... +...+..+...|...|++++|...|+++.+..
T Consensus 730 ~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 730 LKRA--------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HhhC--------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5432 22234444444444455555555544444443222 34444444444444444444444444444432
Q ss_pred CCCCHh---------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 319 VQPDVV---------------------------------TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 319 ~~p~~~---------------------------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+.+.. ++..+...+...|++++|.+.++++.+.+. .+..++..+.
T Consensus 801 -p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 878 (899)
T TIGR02917 801 -PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLA 878 (899)
T ss_pred -CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHH
Confidence 22333 344445555555555555555555555432 2555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 366 DGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~m~ 385 (396)
.++.+.|+.++|.+++++|+
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 55555555555555555554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-20 Score=186.25 Aligned_cols=292 Identities=11% Similarity=0.046 Sum_probs=249.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
+..+...|++++|+..|+++...++ .+...+..++..+.+.|++++|+++++.+.+.. +.+...|..+..++...|+
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3446678899999999999988765 477788899999999999999999999998754 4578889999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+++|...++.+.+... .+...+..+..++...|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988753 367888999999999999999999999998864 45688999999999999999999999999
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
+.... +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+...+.+.|++++|...+.++.+.
T Consensus 695 ~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 695 LQKQH-------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHhhC-------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99875 6678889999999999999999999999998875 45578888999999999999999999999876
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
. +.+...+..+...|...|+.++|...|+++.+.. +.+...+..+...+...|+ ++|+.+++++.+
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 4 5578889999999999999999999999998763 4466666666665555555 445555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=169.81 Aligned_cols=269 Identities=14% Similarity=0.053 Sum_probs=224.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSLIKGLCA 189 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 189 (396)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999865 23566888999999999999999999999987643222 3567889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC----HhhHHHHHHHHhc
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN----TVTYTTIIDGLCK 265 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 265 (396)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. .+. ...+..+...+.+
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG------DSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHHh
Confidence 999999999999998863 45678899999999999999999999999987651 111 2245677888899
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
.|++++|.+.|+++.+.... +...+..+...+.+.|++++|..+++++.+.+......++..++.+|.+.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999876433 56678889999999999999999999999764222346788999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 346 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 9999885 567777788999999999999999999998875 46654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-18 Score=164.50 Aligned_cols=295 Identities=13% Similarity=0.075 Sum_probs=243.8
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
++......|++++|+..|+++....|. +...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~P~--~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVNVC--QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMD 158 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 345566789999999999999997764 77789999999999999999999999998753 335677888999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|...++.+....+. +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..++
T Consensus 159 ~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 159 KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988776544 33344333 3478899999999999998876433444555666788999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH----HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK----AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
++.... +.+...+..+...+...|++++ |...|++..+.... +...+..+...+...|++++|...++
T Consensus 237 ~al~~~-------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 237 SALARG-------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHhcC-------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999875 5678888999999999999986 89999999887544 67789999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
++.+.. +.+...+..+..++.+.|++++|...++.+.+. .|+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 309 ~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 309 QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999864 334567778899999999999999999999875 4444 33444567889999999999999998864
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=159.32 Aligned_cols=293 Identities=11% Similarity=0.036 Sum_probs=242.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
....|++++|+.+++..+...+. +...+..++.+....|++++|++.++++.+.. +.+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 34568999999999999998776 45566667777788999999999999998864 3356778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|...++++.+..+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 9999999998753 3678888999999999999999999998876642 234444443 347889999999999999877
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE----ANCLLIEMMD 316 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 316 (396)
.. ..++...+..+..++.+.|++++|...++++...... +...+..+...+...|++++ |...++++.+
T Consensus 206 ~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 206 FF------ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred cC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 64 1234445566678889999999999999999987644 67788889999999999986 8999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+++.+.+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 53 3356788999999999999999999999999862 3356778888899999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-17 Score=156.40 Aligned_cols=302 Identities=14% Similarity=0.076 Sum_probs=241.8
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
..+..|..+...|++++|+..|++.+...+ +...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345567788899999999999999988654 56789999999999999999999999998864 23567888899999
Q ss_pred HhcCChhhHHHHHHHHHhcCCC--------------------------------CCHHHHHHH-----------------
Q 041816 153 CKMGRVSHGFVVLGRILRSCFT--------------------------------PDAVAFTSL----------------- 183 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l----------------- 183 (396)
...|++++|+..|..+...+.. |........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766544322100 000000000
Q ss_pred ----------HHHH------HhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 041816 184 ----------IKGL------CAESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245 (396)
Q Consensus 184 ----------~~~~------~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (396)
+..+ ...+++++|.+.|++..+.+ .+.....|..+...+...|++++|+..+++.....
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--- 361 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--- 361 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 0000 11257889999999998764 23345678888899999999999999999998865
Q ss_pred cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
+.....|..+...+...|++++|...|++..+.... +...|..+...+...|++++|...|++.++.. +.+...
T Consensus 362 ----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~ 435 (615)
T TIGR00990 362 ----PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS 435 (615)
T ss_pred ----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence 445678899999999999999999999999887543 67889999999999999999999999999864 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+..+..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|.+.|++..+..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 888899999999999999999999875 34468899999999999999999999999988753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-16 Score=149.38 Aligned_cols=296 Identities=13% Similarity=0.022 Sum_probs=184.2
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----------------------
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----------------------- 135 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------- 135 (396)
..+...|++++|+..++..++..+ .+...|..+..++...|++++|+..|.....
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 245 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAES 245 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 456677899999999999988765 4777888888888888888888654432211
Q ss_pred -----------------------------------------------------------------------------CC-
Q 041816 136 -----------------------------------------------------------------------------TG- 137 (396)
Q Consensus 136 -----------------------------------------------------------------------------~~- 137 (396)
.+
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 246 KAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 00
Q ss_pred CCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHH
Q 041816 138 LFP-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216 (396)
Q Consensus 138 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 216 (396)
..| +...|..+...+...|++++|+..+++.++..+. ....|..+...+...|++++|...|++..+.. +.+..+|.
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 403 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYY 403 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 001 1122334444445556666666666666554321 34455566666666666666666666665543 33456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
.+...+...|++++|...|++..... +.+...+..+..++.+.|++++|+..|++..+.... +...|+.+..
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~ 475 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGE 475 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 66666666777777777777666653 345556666666777777777777777776654322 4566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 297 GFCYANDWNEANCLLIEMMDQGVQPDVV------TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
.+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++..... +.+...+..+...+..
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQ 554 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 7777777777777777766542111110 11112222334577777777777776642 2344567777888888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041816 371 TGRVNHAKELFVSMESM 387 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~ 387 (396)
.|++++|.++|++..+.
T Consensus 555 ~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 555 QGDVDEALKLFERAAEL 571 (615)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 88888888888877653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=144.11 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=227.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a 161 (396)
..|+.++|...+.+.++..+ .-...|..|...+-.+|+...|++.|++....+ |+ ...|..|...|.+.+.+++|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred hhcccchhHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHH
Confidence 34556666666666655443 245567777777777788888888888777643 43 45677788888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...|.+.....+ -...++..+...|...|.+|.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.|.+....
T Consensus 272 vs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 888887776542 256667777777888899999999999888763 223678999999999999999999999998886
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
. +.-..+.+.|..+|...|.+++|..+|....+-... -....+.|...|-+.|++++|+..+++.++ +.|
T Consensus 350 ~-------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 350 C-------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred C-------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 4 455678889999999999999999999988775433 355788899999999999999999999887 567
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 322 DV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 322 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
+. ..|+.+...|-..|+++.|.+.+.+.+.. .|. ....+.|...|-..|+..+|+.-|++..+ ++||.
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 74 58889999999999999999999988874 554 46788899999999999999999999876 55664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=143.32 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=164.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhc
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN-ILINCFCKM 155 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~ 155 (396)
.++.+-..|++++|+..++.+++..+. .+..|..+..++...|+.+.|.+.|.+..+.+ |+..... .+....-..
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~--fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPK--FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCch--hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhh
Confidence 344455678899999999999887654 78889999999999999999999998888743 5554332 234444456
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-VITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|++++|...|.+.++.... =...|..|...+...|+.-.|++.|++..+.. |+ ...|-.|...|...+.++.|+..
T Consensus 198 Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 7777777777777665322 24556667777777777777777777766652 32 45566666666666666666666
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|.+..... +...+++..|...|...|+.+.|+..|++..+.... -...|+.|..++-..|+..+|.+.+.+.
T Consensus 275 Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 275 YLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 65555443 223344444444445555555555555554443222 2334455555555555555555555444
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
.... .--....+.|...|...|.+++|..+|....+- .|. ....+.|...|-++|++++|+..|++.+
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 4421 111233344444444444444444444444431 221 2233444444444444444444444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-15 Score=153.00 Aligned_cols=306 Identities=13% Similarity=0.042 Sum_probs=221.0
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-----------
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL----------- 148 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----------- 148 (396)
.+...|++++|+..|++++...+. +...+..+..++...|++++|++.|+++.+... .+...+..+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 345778999999999999997654 677888899999999999999999999987542 223333222
Q ss_pred -------------------------------HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 149 -------------------------------INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197 (396)
Q Consensus 149 -------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (396)
...+...|++++|++.+++.++..+. +...+..+...|.+.|++++|+
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 23344678889999999988887543 6777788888999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-------------------------------
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG------------------------------- 246 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------------------- 246 (396)
..++++.+.. +.+...+..+...+...++.++|+..++.+........
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999887653 22444443333344445555555554443211000000
Q ss_pred --ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 041816 247 --VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324 (396)
Q Consensus 247 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 324 (396)
...+.+...+..+...+.+.|++++|++.|++..+.... +...+..++..+...|++++|...++.+.+.. +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 002445566778888899999999999999999887544 67888999999999999999999999887642 23455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGV--NP---NTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHT 392 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~ 392 (396)
.+..+..++...|++++|.++++.+..... +| +...+..+...+...|+.++|.+.|++... .|+.|+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 667788888899999999999999887521 12 234566677888899999999999988753 555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=154.59 Aligned_cols=194 Identities=11% Similarity=0.049 Sum_probs=151.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhH-----------
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTY----------- 145 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~----------- 145 (396)
+..+...|++++|+..|++.++..|. +...+..+..++.+.|++++|+..|++..+..... +...|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK--DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 44566789999999999999987654 78889999999999999999999999998754221 11112
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH------
Q 041816 146 -NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL------ 218 (396)
Q Consensus 146 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------ 218 (396)
......+.+.|++++|+..|+++++..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 1224457789999999999999998754 367788889999999999999999999988763 2233333222
Q ss_pred ------------------------------------HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 219 ------------------------------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 219 ------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-------PGSVWLTYRLAQD 504 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 334556789999999999988865 4567778888899
Q ss_pred HhccCCHHHHHHHHHHHhhC
Q 041816 263 LCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~ 282 (396)
|.+.|++++|...++++.+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-14 Score=128.65 Aligned_cols=285 Identities=8% Similarity=0.011 Sum_probs=223.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH--HHHHHHHhcCChhh
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN--ILINCFCKMGRVSH 160 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~ 160 (396)
..|+++.|.+......+.... ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 468999999888876554322 2233433455557899999999999999874 35554333 34667889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 233 (396)
|...++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988744 7888999999999999999999999999988654322 133344444445556677777
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+++.+... .+.+......+...+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..+.
T Consensus 251 ~w~~lp~~-------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 251 WWKNQSRK-------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHhCCHH-------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 77776554 3568889999999999999999999999999875 33442 2234444566999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98763 345667889999999999999999999999984 79999999999999999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-14 Score=117.41 Aligned_cols=294 Identities=16% Similarity=0.142 Sum_probs=236.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HhHHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL------YTYNILINCF 152 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~ 152 (396)
.+++-.+++++|+++|-.|.+.++. +..+.-+|.+.+.+.|..|.|+.+...+.+. ||. .....|.+-|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHH
Confidence 3445567899999999999996654 7788888999999999999999999999874 442 2345567778
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCh
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHT 228 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~ 228 (396)
...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|+.+-+++.+.|..+. ...|.-+...+....+.
T Consensus 118 m~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 89999999999999998865 33567788999999999999999999999998864443 23466677777778899
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
+.|..++++..+.+ +..+..--.+...+...|++..|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus 197 d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 197 DRARELLKKALQAD-------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHhhC-------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999876 45556666777889999999999999999999877666778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH
Q 041816 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC---LTGRVNHAKELFVSME 385 (396)
Q Consensus 309 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~ 385 (396)
..+..+.+.. ++...-..+.+.-....-.+.|...+.+-+.+ +|+...+..+|+.-. ..|...+.+.++++|.
T Consensus 270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 9999999864 33444445555555566677788777776665 899999999998764 3467888888999987
Q ss_pred hCCC
Q 041816 386 SMGC 389 (396)
Q Consensus 386 ~~g~ 389 (396)
...+
T Consensus 346 ge~l 349 (389)
T COG2956 346 GEQL 349 (389)
T ss_pred HHHH
Confidence 6544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-14 Score=127.34 Aligned_cols=296 Identities=8% Similarity=-0.034 Sum_probs=216.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCCh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRV 158 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~ 158 (396)
....|+++.|.+.+....+..+. ....+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 44678999999999998776543 34445556777888899999999999987643 444 3344457888899999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HhcCChHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL---CRTGHTIVALNLF 235 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~a~~~~ 235 (396)
+.|.+.++.+.+..+. +..++..+...+...|++++|.+++..+.+.+..........-..++ ...+..+.+.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998744 77889999999999999999999999999987543332211111222 2233333333444
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT-YNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
..+...... ..+.+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++..
T Consensus 249 ~~~~~~~p~---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPR---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCH---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 444443200 0124788999999999999999999999999998644322111 122222234457888899999888
Q ss_pred HHCCCCCC-H--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 315 MDQGVQPD-V--VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 315 ~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-..
T Consensus 326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 765 344 3 556788999999999999999999544433588999999999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=140.77 Aligned_cols=259 Identities=16% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+++++........+.++..|..+.......++++.|++.++++...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 3445566677777777544333312245555666666666666777777777776655422 44445555555 566667
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77766666555432 344555666666666677777777766655432 234555666666666677777777777777
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..+.. |.|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.++++..+.
T Consensus 172 al~~~-------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 172 ALELD-------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHcC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66653 3345666666666666676666666666665543 234555666666666666666666666666653
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
. +.|......+.+++...|+.++|.++..++.
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp S-TT-HHHHHHHHHHHT----------------
T ss_pred c-ccccccccccccccccccccccccccccccc
Confidence 2 3355566666666666666666666665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=141.67 Aligned_cols=263 Identities=16% Similarity=0.125 Sum_probs=116.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (396)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|.+.++++.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45778889999999999997654433 2335555666777778899999999999999987644 66677777777 789
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
+++++|.+++++.-+. .++...+..++..+...++++++.++++.+..... .+.+...|..+...+.+.|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999877654 35667788899999999999999999999876432 3567888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
+|.+.+++..+..+. |....+.++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|...|++..
T Consensus 164 ~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999999987544 67888999999999999999999998887653 4566778899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 351 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+. .+.|+.....+.+++...|+.++|.++.++..+
T Consensus 242 ~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-STT-HHHHHHHHHHHT-----------------
T ss_pred cc-ccccccccccccccccccccccccccccccccc
Confidence 85 355888999999999999999999999887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-13 Score=132.77 Aligned_cols=294 Identities=12% Similarity=0.074 Sum_probs=141.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+.+|++.+...| .+...+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHH
Confidence 4445566666666666655433 244555555566666666666666666665542 22333 5555556666666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-----------------------------------------
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL----------------------------------------- 199 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----------------------------------------- 199 (396)
|+..++++.+..+. +...+..+...+...|..++|++.
T Consensus 135 Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 135 ELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 66666666655432 333333444444444443333322
Q ss_pred -----HHHHHhc-CCCccHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 200 -----FTKLKAF-GCKPNVI-TY----STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 200 -----~~~~~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+. ..|+. .-..+..+|...|+
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~~-a~~~la~~yl~~g~ 287 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPPW-AQRWVASAYLKLHQ 287 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCHH-HHHHHHHHHHhcCC
Confidence 2222211 0011110 00 0012233445566666666666655431 00111 11123445566666
Q ss_pred HHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-----------QPD---VVTFNVIMD 331 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~ 331 (396)
+++|+.+|+++....... ....+..+..++...|++++|..+++.+.+... .|+ ...+..+..
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 666666666654432110 012334444455566666666666665554310 112 112334445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+...|+.++|+++++++... .+.+...+..+...+...|++++|++.+++..+
T Consensus 368 ~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 555556666666666665554 233455555555555555666666666655554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-13 Score=132.03 Aligned_cols=299 Identities=11% Similarity=-0.014 Sum_probs=218.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+..++++++..|. +.. +..+..++...|++++|+..++++.+... -+...+..+..++...|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 4466789999999999999987654 666 88889999999999999999999988642 2444555566666555555
Q ss_pred hhHH----------------------------------------------HHHHHHHhc-CCCCCHH-HH----HHHHHH
Q 041816 159 SHGF----------------------------------------------VVLGRILRS-CFTPDAV-AF----TSLIKG 186 (396)
Q Consensus 159 ~~a~----------------------------------------------~~~~~~~~~-~~~~~~~-~~----~~l~~~ 186 (396)
+.|+ +.++.+.+. ...|+.. .+ ...+..
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 5444 334444432 1112211 11 111334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++....... ..........+..++..
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~---~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI---ADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC---CCCChHHHHHHHHHHHh
Confidence 56779999999999999987632 222 22335778999999999999999987654100 00113456667778899
Q ss_pred cCCHHHHHHHHHHHhhCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNI-----------NPD---VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
.|++++|.++++.+..... .|+ ...+..+...+...|++++|+.+++++.... +-+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 9999999999999987532 123 2245667788899999999999999998763 455778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+...|++++|++.+++..+.. +.+...+..+...+...|++++|..+++++++.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999852 334677778888899999999999999999874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-13 Score=132.88 Aligned_cols=285 Identities=11% Similarity=-0.006 Sum_probs=219.5
Q ss_pred ChhHHHHHHHHHHhcCCC-CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 86 TPNEAFCIFDYMLNMRPS-PP--PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+..++...++.....-+. |+ +...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 344444344444333322 35 67788888888887 88999999888877653 66554444555567899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++++... +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+..
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 999998665 3444556677888899999999999999998875 3334444444455556799999999999999854
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
|+...|..+..++.+.|++++|+..|++.....+. +...++.+..++...|++++|+..+++..+.. +-+
T Consensus 607 --------P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~ 676 (987)
T PRK09782 607 --------PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDD 676 (987)
T ss_pred --------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 67889999999999999999999999999987654 67788888899999999999999999998853 345
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.|.+-+++-...+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 678899999999999999999999999985 4543 555566667777778888888777766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-13 Score=129.77 Aligned_cols=292 Identities=11% Similarity=0.008 Sum_probs=221.1
Q ss_pred ccccCChhHHHHHHHHHHhc-CCCCCCHhhHHHHHHHHHhcCC---hhHHHHH----------------------HHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNM-RPSPPPLTSFNLLFGCLAKTKH---YDTVLSL----------------------FKRLN 134 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~ 134 (396)
.+..|+.++|.++|+..... +....+....+-++..|...+. ..+++.+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 45678899999999988763 2222344455567777777655 3333222 22221
Q ss_pred hC-CC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 041816 135 ST-GL-FP--DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210 (396)
Q Consensus 135 ~~-~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 210 (396)
.. +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 11 23 56677778877776 88889999888887764 45544444555667899999999999998665 45
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
+...+..+...+.+.|+.++|...+++..... +.+...+..+.......|++++|...+++..+.. |+...
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a 611 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANA 611 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHH
Confidence 55567777888999999999999999998764 3344444445555566799999999999998764 56888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
|..+..++.+.|++++|...+++..... +.+...+..+..++...|+.++|+..+++..+. .+-+...+..+..++..
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 335667888888999999999999999999986 34477889999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 041816 371 TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 371 ~g~~~~A~~~~~~m~~~g 388 (396)
.|++++|...|++..+..
T Consensus 690 lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 690 LDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-13 Score=115.55 Aligned_cols=279 Identities=14% Similarity=0.149 Sum_probs=183.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
|.+..++..+|.++++.-..+.|.+++++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 457789999999999999999999999999888778999999999977543 2337899999999999999999999
Q ss_pred HHHHHhcCCHHHH----HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc--CCCCcccccCCHhhH
Q 041816 184 IKGLCAESRIMEA----AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV-ALNLFEEMANG--NGKFGVVCKPNTVTY 256 (396)
Q Consensus 184 ~~~~~~~g~~~~a----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~--~~~~~~~~~~~~~~~ 256 (396)
+.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... |..+....+.|..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999988764 5788899999999999999999999999988854 44444444332 222222233455566
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh------------------------------------------hCCCCCChhhHHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMK------------------------------------------DKNINPDVVTYNSL 294 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~------------------------------------------~~~~~p~~~~~~~l 294 (396)
...+..|....+.+-|.++-.-+. -.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 666777777767666666644433 22223344444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHhCC
Q 041816 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG-KM--------DE-----ASRLL-------ELMILRG 353 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~-------~~m~~~g 353 (396)
+++....|.++-.-++|..++..|-..+...-.-++..+++.. .. .. |..++ .+|. .
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~ 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--A 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--h
Confidence 5555555555555555555555443222222222222222221 00 00 00000 1111 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 354 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
........+.+.-.+.+.|+.++|.++|..+.+.+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 23344555666667778888888888888886544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-12 Score=108.72 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=240.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++.+|.++..+..+.+.. ....|..-+.+.-+.|+.+.+-.++.+.-+..-.++...+-...+.....|+++.|
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 3568999999999998776654 45566666777788999999999999998753345666777788889999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
..-++++.+.+.. +........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999988754 7888999999999999999999999999999866554 4677777777777777777778
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|+..... .+.++..-.+++.-+.++|+.++|.++.++..+.+..|. . ...-.+.+-++.+.-++..++-
T Consensus 252 W~~~pr~-------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 252 WKNQPRK-------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHhccHH-------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHH
Confidence 8877665 356777888899999999999999999999998877665 2 2223456778888888887776
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
.+. .+-++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.++.++-...-..|+.
T Consensus 321 l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 321 LKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 654 233447888999999999999999999998887 4899999999999999999999999999987754444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-14 Score=124.94 Aligned_cols=291 Identities=13% Similarity=0.039 Sum_probs=228.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a 161 (396)
.-+..+|+..|..+..... .+..+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+-+ +-+
T Consensus 332 ~y~~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence 3457899999999555433 3446677788999999999999999999976431 1366778877765533 222
Q ss_pred HHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 162 FVVLG-RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..+. .+.+.. +-.+.+|-++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+....
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 33332 333332 3478899999999999999999999999999874 33788999999999999999999999999876
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
.. +.+..+|--|.-.|.+.++++.|+-.|+...+.++. +.+....+...+-+.|+.++|+.+++++.....
T Consensus 484 ~~-------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~- 554 (638)
T KOG1126|consen 484 VD-------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP- 554 (638)
T ss_pred CC-------chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-
Confidence 54 344556667788999999999999999999987765 777888888889999999999999999987642
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
-|...--.-+..+...++.++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+...++.
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 24444444566677889999999999999986 444667788888999999999999999988887665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-12 Score=124.80 Aligned_cols=292 Identities=11% Similarity=0.028 Sum_probs=174.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+.|+++.|++.|+++.+..|.. ....+ .++..+...|+.++|+..+++.... ..........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~-~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQ-SGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccc-hhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4456666666666666654431 11222 5555555566666666666665521 0112222222344555666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666666665433 3455555566666666666666666666554 3344444333333333444444666666666553
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHH------------------------------------------------HHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDK------------------------------------------------AKE 274 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------------------------------a~~ 274 (396)
|.+...+..++.+..+.|-... |+.
T Consensus 200 -------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 -------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred -------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 2333444444444333333322 333
Q ss_pred HHHHHhhC-CCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 275 LFLQMKDK-NINPDVVT-----YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 275 ~~~~m~~~-~~~p~~~~-----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-++.+... +..|.... ..-.+-++...+++.++++.++.+...+.+....+-..+.++|...+.+++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333321 11132211 1234456778899999999999999888665566888999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 349 MILRG-----VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 349 m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 97642 2334555678899999999999999999999873
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-12 Score=120.31 Aligned_cols=138 Identities=12% Similarity=0.031 Sum_probs=68.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+.++|+.++++.. .+.+........+...+...|++++|+++|+++.+... -+...+..++..+.+.++.++|+
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHH
Confidence 3466666666666665 22212222233334455566666666666666665432 23444555555666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
+.++++.+.. |+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|
T Consensus 157 ~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 157 KQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 6666665542 333333333333333444444666666665543 223333333444443333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-12 Score=114.31 Aligned_cols=254 Identities=10% Similarity=0.065 Sum_probs=201.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|+++.|.+.+.++.+..+. +.....-.....+...|++++|++.++++.+.. +-+...+..+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence 4678999999999999875543 222222233677888999999999999998876 33677888999999999999999
Q ss_pred HHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDA-------VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999987654322 23334444444555667777777776543 245788889999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
+++..+. +++... .++.+....++.+++.+..+...+.... |...+..+...|.+.+++++|.+.|+.+
T Consensus 286 L~~~l~~--------~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 286 ILDGLKR--------QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHhc--------CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998874 345422 2344445669999999999999987654 7778899999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 355 l~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 355 LKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 985 69999999999999999999999999997754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-11 Score=114.00 Aligned_cols=294 Identities=13% Similarity=0.084 Sum_probs=213.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|+.++|..++.++++..+. ....|..|..+|-+.|+.++++..+-.+...+ +-|...|..+.....+.|++++|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 3448999999999999998764 88899999999999999999999887765544 44778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHhcCChHHHHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI----TYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
.-+|.+.++..+ ++...+---+..|-+.|+...|...|.++.....+.|.. .-..+++.+...++.+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999864 466666677889999999999999999998874322222 223346667778888999998888
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC---------------------------C----
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN---------------------------P---- 286 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---------------------------p---- 286 (396)
...... -..+...++.++..+.+...++.|......+...... +
T Consensus 306 ~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 306 ALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 776331 2345567778888888888888888777666541100 1
Q ss_pred --------------------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 287 --------------------------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 287 --------------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
+...|.-+..++.+.|++.+|+.++..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122245555666667777777777777766544444556677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
..|..++|.+.|+..+.. -+.+...-..|...+.+.|+.++|.+.+..|.
T Consensus 461 ~l~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 777777777777777664 22344455555666667777777777776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-12 Score=107.11 Aligned_cols=298 Identities=16% Similarity=0.197 Sum_probs=221.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCCh-hHHHHHHHHHHhCC-------------------C
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHY-DTVLSLFKRLNSTG-------------------L 138 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~-~~a~~~~~~~~~~~-------------------~ 138 (396)
++..+...++.-+++.|...+.. .+...-..|+.. |....+. -.-++-|-.|...| .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 45567788888899999887654 444443333332 1111111 11111222222111 2
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
+....+|.++|.+.|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3456789999999999999999999999998887788999999998765432 337889999999999999999999
Q ss_pred HHHHHhcCChHH----HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH-HHHHHHHHHhh----CCCCC---
Q 041816 219 INGLCRTGHTIV----ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD-KAKELFLQMKD----KNINP--- 286 (396)
Q Consensus 219 l~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~~~~p--- 286 (396)
+++..+.|+++. |.+++.+|++.| +.|...+|..+|..+.+.++.. .|..++.++.. +.++|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999998764 567888999999 8999999999999999888774 34455555432 22222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 287 -DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDV---VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 287 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
|...|...+..|....+.+-|.++..-+... -+.|+. .-|..+....+.....+.....|+.|+-+-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 4456777888888999999998887766532 133332 34677788888889999999999999988788899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
.+...++++..-.|.++-.-++|.+|+..|.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 9999999999999999999999999998873
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-12 Score=113.89 Aligned_cols=260 Identities=9% Similarity=-0.063 Sum_probs=191.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
....|+++.|.+.+....+..+. +.....-.....+...|+++.|++.++.+.+.. +-+...+..+...+.+.|++++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHH
Confidence 34568999999999998876544 233334445778888999999999999999876 3366788899999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGL---CAESRIMEAAALFTKLKAFGC---KPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|.+.+..+.+.+..+.......-...+ ...+..+++...+..+.+... +.+...+..+...+...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999987543332211111222 222333333334444444321 13788899999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhh---HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCCHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV--VTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~ 309 (396)
+++..+.. ||... ...........++.+.+.+.++...+.... |. ....++...+.+.|++++|.+
T Consensus 286 l~~~l~~~--------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 286 IFDGLKKL--------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHHHhhC--------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHH
Confidence 99999864 33331 122223334467889999999888876433 44 567789999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 310 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999644444579999899999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-12 Score=117.97 Aligned_cols=266 Identities=13% Similarity=0.077 Sum_probs=188.8
Q ss_pred CCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAK-----TKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCK---------MGRVSHGFVVLGRIL 169 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 169 (396)
.+...|...+.+... .+++++|+++|++..+.. |+ ...|..+..++.. .+++++|...+++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455556666665322 234678999999998754 43 4455555554432 244789999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+..+. +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------- 402 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD------- 402 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 88644 78888888889999999999999999999875 4457788889999999999999999999998875
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNV 328 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 328 (396)
+.+...+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+ ....+.
T Consensus 403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~ 480 (553)
T PRK12370 403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNL 480 (553)
T ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 23333444455566778999999999999876542224556777888888999999999999887654 344 334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+...|...| ++|...++.+.+. .-.+....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 566677777 4788877777653 112222222 33455667777777766 8887655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-12 Score=107.40 Aligned_cols=164 Identities=15% Similarity=0.073 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 292 (396)
.|...+.+-|.-.++.++|...|+...+.+ +.....|+.+..-|....+...|++-++...+-+.. |-..|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWY 402 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWY 402 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHh
Confidence 344555666778889999999999999976 556789999999999999999999999999987655 899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
.|.++|.-.+...=|+-.|++..... +-|...|.+|.++|.+.++.++|++.|......|- .+...+..|...|-+.+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELK 480 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence 99999999999999999999998753 45788999999999999999999999999998753 36688999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 041816 373 RVNHAKELFVSMES 386 (396)
Q Consensus 373 ~~~~A~~~~~~m~~ 386 (396)
+.++|...|++-++
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-12 Score=118.26 Aligned_cols=250 Identities=12% Similarity=0.049 Sum_probs=184.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK---------TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+.++|++.|++.++..|. +...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467999999999987664 66777777665542 345889999999998875 336778888888899999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|...+++.++.++. +...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999998643 6778888999999999999999999999987522 33334445556777899999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
++.... .+.+...+..+..++...|++++|...++++...... +....+.+...|+..| ++|...++.+.+
T Consensus 431 ~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 987653 1234556778888999999999999999997665322 3445566666777777 478887777664
Q ss_pred C-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 317 Q-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 317 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
. ...+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 502 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 502 SEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 3 122222223 34445556776666665 777765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=117.69 Aligned_cols=260 Identities=17% Similarity=0.085 Sum_probs=210.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCCHHhHHHHHHHHH
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLF-KRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
.+|.+++..+++++|..+|+.+.+..+.. .+.+.|.+.+--+-+. -++..+ +.+.... +-.+.+|..+.++|.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHHHHhcchhh
Confidence 45677888889999999999998877652 4566777766543321 123322 2333322 346789999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
-+++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|+...... +.+-.+|--+.-.|.+.++++.|+-
T Consensus 433 LQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHH
Confidence 999999999999999987532 78899999999999999999999999988653 2244556667888999999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
.|+++.+.+ |.+.+....+...+-+.|+.++|++++++....+.. |+..-...+..+...+++++|+..+++
T Consensus 511 ~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 511 HFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred HHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 999999986 678888889999999999999999999999887665 666666677778889999999999999
Q ss_pred HHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 314 MMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 314 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+. .|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 583 Lk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 583 LKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 9884 454 567888899999999999999999988875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-11 Score=98.22 Aligned_cols=259 Identities=17% Similarity=0.120 Sum_probs=198.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP---DAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a 196 (396)
.++.++|.++|-+|.+.. +-...+.-+|.+.|.+.|..+.|+.++..+.++.--+ .......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 378999999999998843 2244456678899999999999999999998752111 134556677889999999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKEL 275 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 275 (396)
+.+|..+.+.|. --..+...|+..|-...++++|+++-+++...++.. .... ...|.-|...+....+.+.|..+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~---~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT---YRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc---chhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999998753 345677889999999999999999999988876311 0001 23466677777788999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 355 (396)
+.+....+.+ .+..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+.++.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999887544 455556677888999999999999999999865555678899999999999999999999999885 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+....-..+.+......-.+.|..++.+-..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4444444455544455556666666555444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=106.39 Aligned_cols=280 Identities=12% Similarity=0.010 Sum_probs=210.5
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.+++.|+.+.|++++.-+.+......+...-|.-+-.+.+ -.++..|.+.-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4778888999998888776655442333333332222333 346777777777665432 22333333333334456899
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|.+.|.+.+...-.-....|| +.-.+-..|++++|+..|-++... +..+..+...+.+.|-...+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998764332233333 334567789999999999888754 2346777888889999999999999999888
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
... ++.|+...+-|...|-+.|+..+|++.+-+--.. ++-+..+...|...|....-+++++.+|++..-
T Consensus 585 ~sl-------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 585 NSL-------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred ccc-------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 765 5888999999999999999999999987665543 345888999999999999999999999998765
Q ss_pred CCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 319 VQPDVVTFNVIMDELC-KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 319 ~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
++|+..-|..++..|. +.|++.+|.++|+...++ ++.|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 5899999998876654 689999999999999887 88899999999999888774
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-11 Score=102.60 Aligned_cols=155 Identities=16% Similarity=0.111 Sum_probs=112.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
+-..|++++|++.|-++... +..+..+...+...|....+..+|++++.+.... ++-|+.....|...|-+.
T Consensus 534 ~e~~~~ldeald~f~klh~i-------l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 33445555555555444332 2345555566666677777777777777665543 334777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF-CLTGRVNHAKEL 380 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~ 380 (396)
|+-.+|...+-+--+. ++-+..+...|...|....-+++++..|++..- +.|+..-|..++..| .+.|+++.|+++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888888776554433 456777888888888999999999999998765 699999999998766 567999999999
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
|++..+.
T Consensus 683 yk~~hrk 689 (840)
T KOG2003|consen 683 YKDIHRK 689 (840)
T ss_pred HHHHHHh
Confidence 9998753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-11 Score=102.58 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHH
Confidence 4455555666666666666666666665543 2345555666666666666666666666666543 3344556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
..+...+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 66666666666777777766666543211 123455556666777777777777777766543 2234566667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.|++++|...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777777665 344556666666777777777777777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-11 Score=103.20 Aligned_cols=195 Identities=11% Similarity=0.020 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
|+-.+.+-|.-.++.++|..+|++..+.+ +....+|+.+..-|....+...|.+-++.+.+.+ |.|-..|-.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-------p~DyRAWYG 403 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-------PRDYRAWYG 403 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-------chhHHHHhh
Confidence 33444455566677888999999888875 3457788888888999999999999999888875 778888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
|.++|.-.+...=|+-.|++.....+. |...|.+|..+|.+.++.++|++.|......| ..+...+..|.+.|-+.++
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHh
Confidence 999999888888888888888876544 88889999999999999999999998888765 3356788888888999999
Q ss_pred HHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 339 MDEASRLLELMILR----GVNPN--TSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 339 ~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
.++|...|++-++. |...+ .....-|..-+.+.+++++|..+...
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99988888777652 32222 12222234455667777666554433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-11 Score=102.96 Aligned_cols=305 Identities=13% Similarity=0.119 Sum_probs=169.6
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINC 151 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~ 151 (396)
..+..|+.+.++|++++|++.+.+.+...+. .+..|.....+|...|+|+++.+.-.+.++.+ |+- ..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 4566788999999999999999999986543 37889999999999999999998888877743 442 244444555
Q ss_pred HHhcCChhhHHHHH------------------HHH------------Hh-cC--CCCCHH--------------------
Q 041816 152 FCKMGRVSHGFVVL------------------GRI------------LR-SC--FTPDAV-------------------- 178 (396)
Q Consensus 152 ~~~~g~~~~a~~~~------------------~~~------------~~-~~--~~~~~~-------------------- 178 (396)
+-..|++++|+.=. ++. .+ .+ .-|+..
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 55555555443210 000 00 00 001100
Q ss_pred -------------------------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 179 -------------------------------------------------------AFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 179 -------------------------------------------------------~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
+.......+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0000011111234444455555555
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---------------------------ccccCCHhhH
Q 041816 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG---------------------------VVCKPNTVTY 256 (396)
Q Consensus 204 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 256 (396)
++.... +...|--+..+|....+.++....|.+....+.... ..-+.+...|
T Consensus 353 I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 353 IKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred HhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 544321 222255555556666666666666666555441000 0002233344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhH--HHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-----QPDVVTF--NVI 329 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~--~~l 329 (396)
.-+.-+..+.+.+++++..|++.+++-+ --+..|+.....+...+++++|.+.|+..++..- ..+...+ ..+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 4444444455566666666666655422 2455666666666667777777777766664311 1111111 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+- +.-.+++..|..++++.++.. +.....|..|...-.+.|+.++|+++|++-.
T Consensus 511 l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 511 LV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 112366777777777766641 2244567778888888888888888888753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-11 Score=102.05 Aligned_cols=200 Identities=11% Similarity=0.032 Sum_probs=92.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3344445555555555555555555554432 122334444444555555555555555555443321 33344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+...|++++|.+.+++..+.... +.....+..+...+...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------------~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------------PQPARSLENAGLCALKA 148 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccc----------------------------------------ccchHHHHHHHHHHHHc
Confidence 44455555555555444432110 11223334444444555
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
|++++|.+.+++....... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.
T Consensus 149 g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred CCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555554443221 2334444555555555555555555555443 1223334444445555555555555555
Q ss_pred HHHH
Q 041816 347 ELMI 350 (396)
Q Consensus 347 ~~m~ 350 (396)
+.+.
T Consensus 227 ~~~~ 230 (234)
T TIGR02521 227 AQLQ 230 (234)
T ss_pred HHHH
Confidence 4443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-12 Score=115.43 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=152.7
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 041816 96 YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 175 (396)
.+...|+. |+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+. .|
T Consensus 15 ~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred HHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence 34444444 55566666666666666666665 6666655555555566666666666666555544 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
...+|..|..+|...||+.. |+...+ ....+...+...|.......++..+.-.++ .-||.
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-----~lpda-- 142 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPH-----SLPDA-- 142 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcc-----cchhH--
Confidence 56666666666666666544 222111 111223334444444444444433322111 12332
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
...+.-....|-++.+.+++..+..... .|..+ +++-+..... +++-..+.+...+ .|+..+|.+++++-
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 2233334455667777777766643211 11111 2444433332 3333333333322 58889999999998
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
...|+++.|..++.+|.+.|++.+...|..|+-+ .|+..-+..+++-|.+.|+.|+..||
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 9999999999999999999998888888888766 78888888888999999999998885
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=108.60 Aligned_cols=294 Identities=13% Similarity=0.079 Sum_probs=216.8
Q ss_pred CChhHHHHHHHHHH----hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH------HhHHHHHHH
Q 041816 85 ITPNEAFCIFDYML----NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDL------YTYNILINC 151 (396)
Q Consensus 85 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~ 151 (396)
+++..++.+|..+. ..+.. ..++..|.+...+...|++.+|...|+..... ...+|. .+-..+..+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44445555555443 22333 56778888888888889999998888887654 112232 233446666
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
.-..++++.|.+.|..+++..+. -+..|--++.+....++..+|...+....... ..++.++..+...+.+..++..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 67778888888888888876321 23344444444444577888888888877754 45677788888888888888888
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc------------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK------------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+-|+.....-. ..+|+.+...|.+.|.+ .+..+.|+++|.+.....+. |...-|-+.-.++
T Consensus 584 ~k~f~~i~~~~~-----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA 657 (1018)
T KOG2002|consen 584 KKKFETILKKTS-----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLA 657 (1018)
T ss_pred ccHHHHHHhhhc-----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhh
Confidence 887776665432 23566666666665543 24578999999999887655 7788888889999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
..|++.+|..+|.++.+... -+..+|-.+.++|...|++..|+++|+...+. .-..+..+...|.+++.+.|++.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999998643 35568899999999999999999999977764 44558899999999999999999999
Q ss_pred HHHHHHHhCC
Q 041816 379 ELFVSMESMG 388 (396)
Q Consensus 379 ~~~~~m~~~g 388 (396)
+.+.......
T Consensus 737 ~~ll~a~~~~ 746 (1018)
T KOG2002|consen 737 EALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhC
Confidence 9988877643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-11 Score=98.88 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=196.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
+.+.++|.+.|.+.+|..-++..++. .|-+.+|..|-+.|.+..++..|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998877 456778888999999999999999999988775 233444445677788889
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++.++|.++|+...+.. +.++.....+...|.-.++++.|++.|+.+...|+. ++..|+.+.-+|.-.++++
T Consensus 304 ~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcC-------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 99999999999998875 567788888888899999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
-++.-|.+....-..|+ ...|-.+.......||+..|.+.|+-..... .-....++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999886544455 3467778888888999999999999888762 44678899998888999999999999998
Q ss_pred HHhC
Q 041816 384 MESM 387 (396)
Q Consensus 384 m~~~ 387 (396)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=93.03 Aligned_cols=275 Identities=11% Similarity=0.047 Sum_probs=215.2
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 112 LLFGCLAK--TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 112 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
.+..++.+ .|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+....++....-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 59999999999998887744 3455777788888999999999999999887556788888889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc-ccCCHhhHHHHHHHHhccCC
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 268 (396)
.|+.+.|..-++++.+.+ +.+........++|.+.|++.....++..+.+.+...... ......+|..++.-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999886 5578889999999999999999999999999987211000 00123477888887777777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
.+.-...+++.... .+-++..-.+++.-+.++|+.++|.++..+..+++..|+ -...-.+.+-++...-++..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence 77767777776543 233677788889999999999999999999999877666 2223345677888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 396 (396)
-.+. .+.++..+.+|...|.+++.|.+|.+.|+...+. .|+..+|
T Consensus 320 ~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~ 364 (400)
T COG3071 320 WLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY 364 (400)
T ss_pred HHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence 7765 4456689999999999999999999999977764 4665543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-09 Score=100.43 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=206.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hc-----
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC-KM----- 155 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~----- 155 (396)
...|++++|++.++.....-. ............+.+.|+.++|..+|..+.+.+ |+...|...+..+. -.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 356889999999988655433 355667778899999999999999999999987 66666655554443 22
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|.......-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 24677788888887654 3332222222222222233 34556677778888653 466666667766666666666
Q ss_pred HHHHHhcCCCCc--------ccccCCHh--hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 041816 235 FEEMANGNGKFG--------VVCKPNTV--TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304 (396)
Q Consensus 235 ~~~~~~~~~~~~--------~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 304 (396)
+......-...+ ..-+|+.. ++..+...|...|++++|++.+++.++..+. .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 666543321110 01245553 4466678889999999999999999887543 477888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHH
Q 041816 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS------TF--STLMDGFCLTGRVNH 376 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~ 376 (396)
.+|...++...... .-|...=+-.+..+.+.|++++|.+++....+.+..|-.. +| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999875 3466677778888999999999999999998776544221 22 445678899999999
Q ss_pred HHHHHHHHHh
Q 041816 377 AKELFVSMES 386 (396)
Q Consensus 377 A~~~~~~m~~ 386 (396)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-10 Score=97.99 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=205.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++.....-..-+...+++.+..++++...+.. ++....+..-|.++.+.|+..+-..+=.++++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44444555556677889999999999887764 5667777777778888898888888877887764 346788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.|...|+..+|.++|.+..... +.=...|-.+...|+-.|+.+.|...+..+.+.- +-...-+.-+.--|.+
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-------~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-------PGCHLPSLYLGMEYMR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-------cCCcchHHHHHHHHHH
Confidence 8888899999999998877653 1235578888888999999999988888776642 2233334455566778
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHhhHHHHHHHHHhcCCH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GV---Q-PDVVTFNVIMDELCKNGKM 339 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~ 339 (396)
.++.+.|.+.|.+.....+. |+..++-+.-...+.+.+.+|..+|+..... .+ . --..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 88899999998888765433 6777777777777788888998888877621 11 1 1234678888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 340 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
++|+..+++.+.. .+-+..++.++.-.|...|+++.|.+.|.+... +.|+.
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 9999999888876 455888888888888888999999988888763 55665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-09 Score=99.15 Aligned_cols=263 Identities=14% Similarity=0.072 Sum_probs=206.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
.+.-.|++++|.+++.++.+.. +.+...|..|...|-..|+.+++...+-..-...+ -|...|..+.......|++++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3444599999999999998875 34778899999999999999999887766655543 377999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH----HHHHHHHhccCCHHH
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY----TTIIDGLCKEGFVDK 271 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 271 (396)
|.-.|.+.++.. +++....-.-...|-+.|+...|...|.++.... .+.|..-+ -..+..+...++-+.
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999885 4566666667788999999999999999999875 12222222 234556777888899
Q ss_pred HHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------C---
Q 041816 272 AKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV---------------------------Q--- 320 (396)
Q Consensus 272 a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~--- 320 (396)
|.+.++..... +-..+...++.++..+.+...++.|......+..... .
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999887762 2223566788888888888888888877766654110 0
Q ss_pred ---------------------------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 321 ---------------------------------PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 321 ---------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
-+...|.-+.++|...|++.+|+.+|..+......-+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 12233567778899999999999999999987555567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 041816 368 FCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 368 ~~~~g~~~~A~~~~~~m~~~ 387 (396)
|...|.+++|.+.|++....
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999998864
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-10 Score=101.89 Aligned_cols=244 Identities=17% Similarity=0.097 Sum_probs=180.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF-TPDAV-AFTSLIKGLCAESRIMEAAALFTKLKAF-----G-- 207 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g-- 207 (396)
..+...+...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446677899999999999999999988764 21 22333 3345778899999999999999988653 2
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhC---C
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDK---N 283 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 283 (396)
.+.-..+++.|..+|.+.|++++|...++...+.....-....|.+. .++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12224677888889999999999988888765533110000123333 4567777889999999999999876431 1
Q ss_pred CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 284 INP----DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GV--QP-DVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 284 ~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+ -..+++.|...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+...+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2467999999999999999999999998742 11 22 2456788899999999999999998876542
Q ss_pred ----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 353 ----G--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 353 ----g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
| .+-...+|..|...|...|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 22345789999999999999999999988775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=79.25 Aligned_cols=50 Identities=42% Similarity=0.895 Sum_probs=48.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=95.34 Aligned_cols=230 Identities=13% Similarity=0.100 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (396)
+.+..+|.+.|.+.+|.+.++..... .|-+.||..|-+.|.+..+.+.|+.++.+-++.- +-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56888999999999999999988775 4778888999999999999999999999988763 33555556677888889
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
++.++|.++|+...+.. +.++.....+...|.-.++++.|++.|+.+.+.| .-+...|+.+.-+|.-.+++|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------AQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------CCChHHHhhHHHHHHhhcchh
Confidence 99999999999998874 4577777888888999999999999999999988 567889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 271 KAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-++..|......--.|+ ...|..+.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998876433333 4568888888889999999999999888654 34567899999888999999999999998
Q ss_pred HHhC
Q 041816 349 MILR 352 (396)
Q Consensus 349 m~~~ 352 (396)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-09 Score=91.52 Aligned_cols=217 Identities=13% Similarity=0.004 Sum_probs=117.0
Q ss_pred ChhHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
..+.++.-+.+++...+.. .....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455555555555433221 123456666667777777777777777776654 2345667777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
.|+..++..+. +..++..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777765433 45566666677777777777777777776653 222111122222334566777777775544321
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK---NIN---PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.++...+ .+.. ...|+...+ +.+..+.+. .+. .....|..+...+.+.|++++|...|++..+.
T Consensus 196 ------~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 ------DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ------CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2222111 1222 223333332 233333211 000 01234555556666666666666666665554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-09 Score=98.18 Aligned_cols=290 Identities=10% Similarity=-0.010 Sum_probs=196.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+..+++++.......+. ++...+.|...+.-.|+++.++++...+...... .-...|..+.++|-..|++++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 3466777777777666554 6677788888888888888888888887654311 12345777888888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----HTIVALNLFEEM 238 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~ 238 (396)
..|.+..+....--...+.-+..+|.+.|+++.+...|+...+.. +-+..+...+...|...+ ..+.|..++.+.
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 888887765433224445567788888888888888888887763 345666666666666664 556777777777
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH----hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM----KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+.. +.|...|..+...+....-+.. +..|... ...+-.+.+...|.+.......|++++|...|+..
T Consensus 407 ~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 407 LEQT-------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred Hhcc-------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 7653 6677788888777766544443 6665554 33444567788888888888889999998888887
Q ss_pred HHC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQ---GVQPDV------VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~---~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
... ...+|. .+--.+...+-..++.+.|.+.|..+.+. .+--+..|-.++......+...+|..++++..
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 754 122333 22234555666677888888888888775 22233344444433334467777777777766
Q ss_pred h
Q 041816 386 S 386 (396)
Q Consensus 386 ~ 386 (396)
.
T Consensus 558 ~ 558 (1018)
T KOG2002|consen 558 N 558 (1018)
T ss_pred h
Confidence 5
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-08 Score=90.48 Aligned_cols=297 Identities=14% Similarity=0.105 Sum_probs=181.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+.+.++-|..+|...++-.+ .+...|......--..|..++...++++.... ++-....|......+-..|++..|.
T Consensus 528 k~~~~~carAVya~alqvfp--~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFP--CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 44556667777776666443 35556666655555566666666666666554 2223444555555556666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.++....+.... +..+|-.-+..-..+.+++.|..+|.+.... .++..+|.--+....-.+..++|++++++..+..
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 666666665433 5666666666666666666666666666554 2444445444444444555555555555554433
Q ss_pred CCCc---------------------------ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 243 GKFG---------------------------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 243 ~~~~---------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+. ..++..+..|..|...--+.|.+-.|..+++...-+++. +...|-..|
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~I 760 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESI 760 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHH
Confidence 1110 013444455666666666667777777777777666655 677777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----C-------------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQ----G-------------------------VQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~----~-------------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
+.-.+.|..+.|..++.++... | +.-|......+...+-...++++|++.|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8878888887777776665542 1 1223444455555666667788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 347 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+.++.+ +.+-.+|.-+...+.++|.-++-.++++.....
T Consensus 841 ~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 841 ERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 8887752 334567777777778888877777787777653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-10 Score=99.85 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=180.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhc-----CC-
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----GL-FPDLYT-YNILINCFCKMGRVSHGFVVLGRILRS-----CF- 173 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~- 173 (396)
..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|++++.. |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999988664 21 233333 334777889999999999999999753 21
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC-cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C
Q 041816 174 -TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----GCK-PN-VITYSTLINGLCRTGHTIVALNLFEEMANGNG-K 244 (396)
Q Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~-~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~ 244 (396)
+.-..+++.|...|.+.|++++|..++++..+. |.. +. ...++.+...+...+++++|..+++...+... .
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 223567788888999999999999988876543 211 22 23456777889999999999999987655321 1
Q ss_pred CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 041816 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-----N--INPDVVTYNSLIHGFCYANDWNEANCLLIEMMD- 316 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 316 (396)
++...+--..+++.|...|.+.|++++|.++|++.... | ..-....++.|...|.+.+.+++|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11101122457899999999999999999999997642 1 111245678899999999999999999987553
Q ss_pred ---CCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 317 ---QGV-QPD-VVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 317 ---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|. .|+ ..+|..|...|...|+++.|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 223 46899999999999999999999887763
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-09 Score=91.19 Aligned_cols=225 Identities=15% Similarity=0.038 Sum_probs=160.8
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTG-LFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 197 (396)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++.++..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 46677888888877532 1222 355777888899999999999999999987643 7899999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
..|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|.+.|+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--------PNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999864 3357788889999999999999999999998865 332222222333456788999999997
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ---GV--QP-DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 278 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..... .|+... ..+ .....|+..++ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++..+
T Consensus 190 ~~~~~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYEKL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhhC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 765432 223222 222 23345666554 344554421 11 11 235788999999999999999999999998
Q ss_pred CCCCCCHHHH
Q 041816 352 RGVNPNTSTF 361 (396)
Q Consensus 352 ~g~~p~~~~~ 361 (396)
... |+..-+
T Consensus 265 ~~~-~~~~e~ 273 (296)
T PRK11189 265 NNV-YNFVEH 273 (296)
T ss_pred hCC-chHHHH
Confidence 643 344333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-09 Score=93.30 Aligned_cols=273 Identities=15% Similarity=0.067 Sum_probs=219.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
...++.+-+++++.+.+..|. ....+-.-|.++...|+..+-..+-.++.+.- +-.+.+|-++.--|.-.|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHH
Confidence 445688999999999987765 66677777889999999988888888887754 446788999998888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+.|.+....... =...|-.+...|+-.|..|+|...+...-+.= +-...-+--+.--|.+.+..+.|.+.|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 999998765432 35678889999999999999999988776541 0011112234446888999999999999999874
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NIN----PDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
|.|+...+-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 411 -------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 411 -------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred -------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 778899999999989999999999999987621 111 1234688999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 370 (396)
.. +-|..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+..
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 63 66889999999999999999999999999887 58888777777765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-09 Score=91.54 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=179.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
.+-.|+.-.|.+-|+..+...+.+++ .|-.+..+|++..+.++.+..|+...+.+. -|+.+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHH
Confidence 44457888999999999998776443 377788899999999999999999988763 477788888888888899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|..-|++.+...+. +...|-.+.-+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+....
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999987644 6777877888888999999999999999886 455688999999999999999999999999887
Q ss_pred cCCCCcc-cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 241 GNGKFGV-VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 241 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
....... .+.+.+.+.-.++..- =.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5421000 0011111222222222 238899999999998887655 667888899989999999999999988654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-08 Score=79.42 Aligned_cols=188 Identities=12% Similarity=-0.016 Sum_probs=78.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
|.-.|...|++..|..-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++.++..+. +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3334444444444444444444432 112334444444444444444444444444443322 34444444444444444
Q ss_pred HHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 193 IMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
+++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +....+...+.....+.|++..
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-------p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-------PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-------cCCChHHHHHHHHHHhcccchH
Confidence 4444444444443210 0112334444444444444444444444444432 2223333344444444444444
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 272 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|...++.....+. ++..+.-..|+.--..|+-+.+.++
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444444443332 3444444444444444444444333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-07 Score=84.74 Aligned_cols=294 Identities=12% Similarity=-0.010 Sum_probs=180.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChh
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPL-TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVS 159 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~ 159 (396)
++++++...+....+..+...+. .........+...|++++|.+++++..+.. +.|...+.. ...+.. .+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~ 97 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRD 97 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCch
Confidence 45666666666666554432232 223333445677899999999999988753 224434442 222323 34455
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..++++..
T Consensus 98 ~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l 175 (355)
T cd05804 98 HVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred hHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 5555554411 1122234455566778889999999999999999875 4467788889999999999999999999988
Q ss_pred hcCCCCcccccCCH--hhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H
Q 041816 240 NGNGKFGVVCKPNT--VTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPDVVTY-N--SLIHGFCYANDWNEANCL--L 311 (396)
Q Consensus 240 ~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~~~~~a~~~--~ 311 (396)
.... ..++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+... +
T Consensus 176 ~~~~-----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 176 DTWD-----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred hccC-----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 7541 01222 3456788899999999999999999864432 1111111 1 223333344443333332 1
Q ss_pred HHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 312 IEMMDQGV--QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN------P--NTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 312 ~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~------p--~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
........ ............++...|+.++|..+++.+...... . .....-...-++...|+.++|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHH
Confidence 11111111 111122235677788899999999999988764211 0 1122222223456889999999999
Q ss_pred HHHHhC
Q 041816 382 VSMESM 387 (396)
Q Consensus 382 ~~m~~~ 387 (396)
......
T Consensus 331 ~~al~~ 336 (355)
T cd05804 331 GPVRDD 336 (355)
T ss_pred HHHHHH
Confidence 887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-07 Score=82.34 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=191.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|+...|.++|++-.. .. |+...|++.+..-.+.+.++.|..+|++..-. .|+..+|.-..+.=.+.|.+..+..+
T Consensus 155 gNi~gaRqiferW~~--w~-P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WE-PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 556677777776654 23 67888888888888888888888888887653 47777776666666666666666555
Q ss_pred HHHHHhc-C-----------------------------------------------------------------------
Q 041816 165 LGRILRS-C----------------------------------------------------------------------- 172 (396)
Q Consensus 165 ~~~~~~~-~----------------------------------------------------------------------- 172 (396)
|+..++. |
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 5544432 1
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH--HHHHHHHH--------HHHhcCChHHHHHH
Q 041816 173 --------FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV--ITYSTLIN--------GLCRTGHTIVALNL 234 (396)
Q Consensus 173 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~ll~--------~~~~~g~~~~a~~~ 234 (396)
-+.|-.+|-..++.-...|+.+...++|++.+.. ++|-. ..|.-.|. .-....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1123344444444444555566666666655543 23311 11211111 11224556666666
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHH----HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDG----LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|+...+. +|-...||.-+=-+ -.++.++..|.+++.... |..|...++...|..-.+.++++.+..+
T Consensus 389 yq~~l~l-------IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 389 YQACLDL-------IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHhh-------cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6666553 34444555444333 346778888888887765 4567888899999988999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+++.++.+ +-|..+|......=...|+.+.|..+|+-++... .......|-+.|+-=...|.++.|..+|+++.+.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99999875 4567788888888888999999999999988752 2224456667777677899999999999998864
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-08 Score=86.52 Aligned_cols=287 Identities=8% Similarity=-0.039 Sum_probs=197.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPP-PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
+|..-....+....+..|...- -..+|+.-...|.+.+.++-|..+|...++.- +.+...|...+..--..|..+.-.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence 3556666777777777765533 34689999999999999999999999998753 446778888887777889999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.++.+.+..-+ -....|-.....+-..|+...|..++....+.. +.+...|-.-+.......+++.|..+|.+.....
T Consensus 571 Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 571 ALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 99999998743 356667777778888899999999999998875 4478899999999999999999999999988754
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
|+...|.--+..---.++.++|.+++++..+.-.. -...|-.+.+.+-+.++.+.|...|..-.+. ++-.
T Consensus 649 --------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 649 --------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred --------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 67777776666666678888888888777654211 2334555555555555555555555443332 1222
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
...|-.|.+.=-+.|.+-+|..++++..-++ +-+...|-..|++-.+.|..+.|..+..+.
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344444444444455555555555544431 224445555555555555555555444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-08 Score=78.16 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=103.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
.++.+|+..|++..|..-+++.++.+|. +..+|..+...|.+.|..+.|.+.|++..+.. +-+..+.|.....+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 3445555666666666666666555443 55555555555666666666666666555533 12344455555555555
Q ss_pred CChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666665555431 11123445555555555566666666665555543 22233444555555555666666655
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
++.....+ .++..+.-..|..--..|+.+.+-+.=.++..
T Consensus 196 ~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554 34555555555555555555555554444443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-08 Score=82.92 Aligned_cols=288 Identities=12% Similarity=0.042 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~ 163 (396)
++...|.+.+-.+......+.++.....+..++...|+.++|+..|++....+ |+.. ......-.+.+.|+.+....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34445555555444444455677777778888888888888888888776532 3222 11222223446677777666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
+...+.... +.+...|..-+.......++..|+.+-++.++.. +.+...+-.-...+...+++++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 666665432 1233444444444555677778887777777654 3355556555667777888888888888877754
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI-HGFC-YANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~p 321 (396)
|-+...|.-|+..|...|.+.+|..+-+...+. ..-+..+...+. ..|. ....-++|.++++...+. .|
T Consensus 365 ------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P 435 (564)
T KOG1174|consen 365 ------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NP 435 (564)
T ss_pred ------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CC
Confidence 456778888888888888888887766654432 112444444442 2222 222346677777766653 45
Q ss_pred CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 322 DV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 322 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+- ...+.+...+...|..+.+..+++.... ..||....+.|.+.+...+.+++|++.|....+.+
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 53 3556777888889999999999998887 47899999999999999999999999888776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-07 Score=86.89 Aligned_cols=262 Identities=11% Similarity=0.095 Sum_probs=186.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-- 190 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 190 (396)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 445678899999999999886543 3333445667788899999999999999999998743 666666666666322
Q ss_pred ---CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 191 ---SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 191 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
.+.+....+|+++...- |.......+.-.+....++. .+...+..+...| + +.+|+.+-..|...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDP 156 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcCh
Confidence 35778888999887763 43333333322222212222 3445555666655 2 34677777777776
Q ss_pred CCHHHHHHHHHHHhhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHH
Q 041816 267 GFVDKAKELFLQMKDK----N----------INPDV--VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVI 329 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~----~----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 329 (396)
.+.+...+++...... + -.|.. .++..+.+.|...|++++|+.++++.++. .|+ +..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 6666666776665432 1 12333 24566788889999999999999999987 465 6788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 390 (396)
.+.+-+.|++.+|.+.++...... .-|...=+-.+..+.+.|+.++|.+++....+.+..
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999863 225555566677789999999999999999877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-07 Score=82.11 Aligned_cols=274 Identities=9% Similarity=-0.034 Sum_probs=174.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.....|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+++++..+..+. +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4566777778888888888888777777654321 12221 2222344566789999999999999887533 4444442
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 183 ---LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 183 ---l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+.......+..+.+.+.++.... ..+........+...+...|++++|...+++..+.. +.+...+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~~~~~~~l 154 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------PDDAWAVHAV 154 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCcHHHHHH
Confidence 11222224555666666654211 122234455566778899999999999999999875 5667788899
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhH-H--HHHHH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNIN-PDV--VTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTF-N--VIMDE 332 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~l~~~ 332 (396)
..++...|++++|...+++....... |+. ..|..+...+...|++++|..+++++..... .+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 99999999999999999998765322 222 3456788889999999999999999864322 1112111 1 33333
Q ss_pred HHhcCCHHHHHHH--HHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 333 LCKNGKMDEASRL--LELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 333 ~~~~g~~~~A~~~--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+...|..+.+.+. +......... ...........++...|+.++|..+++.+...
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444544333333 1111111111 11222235666778899999999999998763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-06 Score=76.92 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=65.9
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh--hhHHHHH--------HHHHhcCCHHHHHHHHHHHHHCCC
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV--VTYNSLI--------HGFCYANDWNEANCLLIEMMDQGV 319 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li--------~~~~~~~~~~~a~~~~~~~~~~~~ 319 (396)
+-|..+|--.+..-...|+.+...++|+..... ++|-. ..|...| -.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 345567777777777788889988998888754 33321 1111111 1113455666666666655542 2
Q ss_pred CCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 320 QPDVVTFNVIMDELC----KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+-...||.-+--+|+ ++.++..|.+++...+. .-|-..+|...|..=.+.+.+|...++|++.++
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 222233332222222 33444444444444432 234444444444444444444444444444444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=87.22 Aligned_cols=249 Identities=16% Similarity=0.135 Sum_probs=144.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
..-.|++..++.-.+ .....+. ........+.+++.-.|+++.++ .++.... .|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 345677777776655 3222221 33445556677777778776544 3333322 4555555545444433344444
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 161 GFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 161 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
++.-+++....... .+..........+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444444333322 22333333335566678888888777542 255666677788888888888888888887
Q ss_pred hcCCCCcccccCCHhhHHHH----HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 240 NGNGKFGVVCKPNTVTYTTI----IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+.+ .|. +...+ +..+...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+..
T Consensus 159 ~~~--------eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 159 QID--------EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp CCS--------CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred hcC--------CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 654 232 22223 33333345688888888887654 44577778888888888888888888888876
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 041816 316 DQGVQPDVVTFNVIMDELCKNGKM-DEASRLLELMILR 352 (396)
Q Consensus 316 ~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 352 (396)
..+ +-+..+...++.+....|+. +.+.+.+.++...
T Consensus 229 ~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 EKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred Hhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 543 23455666677777777776 5666777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-07 Score=76.46 Aligned_cols=262 Identities=14% Similarity=0.001 Sum_probs=198.6
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
..+..+...|+.++|+..|++..-.++. ++.........+.+.|+++....+...+.... .-....|-.-.......
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy--~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPD--NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChh--hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhh
Confidence 3455677899999999999999876654 55554444555678899998888888876532 12334444444555667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
.+++.|+.+-++.++.... +...+-.-...+...|++++|.-.|+...... +-+...|.-|+.+|...|.+.+|..+-
T Consensus 314 K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8899999999998876533 56666666678888999999999999888763 457899999999999999999999888
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHH-HHH-hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTII-DGL-CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+...+. ++.+..+.+.+. ..+ ....--++|.++++.-....+. -....+.+...|...|..+.++.+++.
T Consensus 392 n~~~~~-------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 392 NWTIRL-------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHH-------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 776665 345556655552 222 2333457888888887765322 234567777888899999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.... .||....+.|.+.+...+.+.+|++.|....+.
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8874 689999999999999999999999999988874
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-07 Score=75.38 Aligned_cols=297 Identities=11% Similarity=0.081 Sum_probs=221.8
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHh
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN-ILINCFCK 154 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~ 154 (396)
.+|..++..|++.+|+.-|...++.+| .+-.++..-...|...|+-..|+.-+.+.++. +||-..-. .-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 346667788999999999999988544 35455555566788889999999999988874 57754322 23345779
Q ss_pred cCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+|.+++|..-|+.+++....-+ .......+..+...|+...|+.....+.+.. +-|...+..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 9999999999999998753211 1122334455667899999999999999874 558888888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh----HHHH--
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT----YNSL-- 294 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~l-- 294 (396)
+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.++...++..+.+ ||... |-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 9999999999998888877764 5677788888888899999999999999888764 34322 1111
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 041816 295 -------IHGFCYANDWNEANCLLIEMMDQGVQPDV---VTFNVIMDELCKNGKMDEASRLLELMILRGVNP-NTSTFST 363 (396)
Q Consensus 295 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 363 (396)
+......++|.+++...+..++....... ..+..+-.++...|.+.+|++...+..+. .| |+.++--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 12234567788888888887775422122 23455667778889999999999999874 45 4888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
-..+|.-..++++|+.-|+...+.+
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8899999999999999999988754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-06 Score=77.26 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=95.5
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.|..+..-|+.++|....+..+..++ .+.++|..+.-.+...+++++|++.|......+ +-|...|.-+.-.-++.|
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMR 123 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHH
Confidence 35566777888888888888877554 477888888888888888888888888887754 224445544444444445
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHH--------------------
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITY-------------------- 215 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~-------------------- 215 (396)
+++.....-..+.+..+ .....|..+..++.-.|+...|..+++...+.. -.|+...+
T Consensus 124 d~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 55544444444444321 123334444444444445554444444443322 11222221
Q ss_pred --------------------HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 216 --------------------STLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 216 --------------------~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..-...+.+.+++++|..++..+....
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 223345667778888888888887764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-06 Score=76.43 Aligned_cols=207 Identities=11% Similarity=0.047 Sum_probs=134.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-- 193 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 193 (396)
+...++.++|+.+++++.+... -+..+|+..-.++...| ++++++..++++.+...+ +..+|+...-.+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3344567777777777776431 13345555555555666 467777777777776544 555666555555555542
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc---CC--
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GF-- 268 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 268 (396)
+++..+++++.+.. +.|..+|+....++...|+++++++.++++.+.+ +.|..+|+....++.+. |.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHHHHhcccccccc
Confidence 56677777777765 4477788888778888888888888888887765 45666776666555443 22
Q ss_pred --HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 269 --VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA----NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 269 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
.++.++...++....+. |...|+.+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 24566666676666554 777888887777663 34466877777766643 3356677778888875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-07 Score=78.21 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=158.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hh
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--SH 160 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~ 160 (396)
.++.++|+.+.+.+++..|. +..+|+....++...| +++++++.++++.+.+. .+..+|+.....+.+.|+. ++
T Consensus 50 ~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHH
Confidence 35689999999999997765 7778888877888877 68999999999988653 3566787776666677763 67
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCh----HHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT---GHT----IVALN 233 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~----~~a~~ 233 (396)
++++++.+++.... +..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+. |.. ++.+.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88999999987754 88999999999999999999999999999986 44777888777666554 222 46777
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE----GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
...++.... +-|...|+.+...+... +...+|.+.+.+....++. +......|+..|+.
T Consensus 205 y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 777777764 67888999998888773 4456688888887665443 66777888888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=87.09 Aligned_cols=249 Identities=17% Similarity=0.133 Sum_probs=142.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775555 222221223344556677777777766433 3333332 45555555555444443445555
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHH
Q 041816 197 AALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275 (396)
Q Consensus 197 ~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 275 (396)
..-++.....+.. .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5544443333222 22222233334555677888887777542 2455666777788888888888888
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+...
T Consensus 154 l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887653 33344444444432 33577888888887653 456777777888888888888888888887766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 041816 352 RGVNPNTSTFSTLMDGFCLTGRV-NHAKELFVSMESM 387 (396)
Q Consensus 352 ~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 387 (396)
.. +-+..+...++.+....|+. +.+.+++.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 52 33566677777777777776 5666777776653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-07 Score=83.72 Aligned_cols=252 Identities=17% Similarity=0.048 Sum_probs=182.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
.+.+.|++.+|.-.|+.....+ +-+...|..|.......++-..|+..+.+.++..+. +..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888877765 236778888888888888888888888888887644 77778888888888888888
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHH---------HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLI---------NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
|.+.++.-+....+ -. |.... ..+.....+....++|-++....+ ..+|..+...|.-.|--.
T Consensus 372 Al~~L~~Wi~~~p~-y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHhCcc-ch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcc
Confidence 88888776554211 00 00000 111122223344555555554431 347888889999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV-VTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
|++++|...|+......+. |..+||.|...++...+.++|+..|.+.++. +|+. ...-.|.-+|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999887655 8889999999999999999999999999984 6763 4555677789999999999998
Q ss_pred HHHHHhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 346 LELMILR---------GVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 346 ~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
|-..+.. +..++...|..|=.++.-.++.|-+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8766542 1223456787777777777877755443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=84.44 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=186.8
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+++.|++.+|.-.|+..++..|. +...|..|....+..++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 55778899999999999998775 89999999999999999999999999999865 2356777888888999999999
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 161 GFVVLGRILRSCFTP--------DAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 161 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
|+..++..+...++- +...-.. ..+.....+....++|-++ ...+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999887654220 0000000 1111222234444555444 4455557888899999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
...|+.+.... |.|...||-|...++...+.++|+.-|.+.++..+. -+.....|.-.|...|.+++|...|
T Consensus 450 iDcf~~AL~v~-------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 450 VDCFEAALQVK-------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHhcC-------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999875 678899999999999999999999999999886433 2445556666789999999999999
Q ss_pred HHHHHC---------CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041816 312 IEMMDQ---------GVQPDVVTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 312 ~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 344 (396)
-.++.. +..++...|..|=.++.-.++.|.+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 876632 112234566666555555565554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.5e-07 Score=79.70 Aligned_cols=302 Identities=12% Similarity=0.080 Sum_probs=187.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMG 156 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 156 (396)
|+..+..|+++.|+..|...+...| ++-..|..-..+|+..|++++|++=-.+-.+. .|+ ...|.....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 4556677778888888877766544 46667777777777777777777665555543 344 345666666666777
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHH------------------------------------------------------
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTS------------------------------------------------------ 182 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 182 (396)
++++|+..|.+-++.... +...++.
T Consensus 85 ~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred cHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 777777776665544311 2222222
Q ss_pred ------------------------------------------------------------------HHHHHHhcCCHHHH
Q 041816 183 ------------------------------------------------------------------LIKGLCAESRIMEA 196 (396)
Q Consensus 183 ------------------------------------------------------------------l~~~~~~~g~~~~a 196 (396)
+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 22222233334444
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
++.+....+.. -+..-++....+|...|...+.....+...+.++........=...+..+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 44444444332 2333445555666666766666666665555542100000000112222444677788999999999
Q ss_pred HHHhhCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 277 LQMKDKNINPDVVTY-------------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
.+.......|+...= ..-...+.+.|++..|...|.++++.. +-|...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 887654444433221 112355678899999999999999876 567889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+|.+.|.+..|++-.+..++. -++....|..=..++....+++.|++.|++-.+..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999988877775 23344555555666667788999999998877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-07 Score=90.06 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=97.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFT---PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
..|-..|....+.++.++|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34455555555555555555555555432 111 012344444444444455555555555555532 122334555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHG 297 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~ 297 (396)
...|.+.+..++|-++++.|.+.. ......|...+..+.+..+-+.|..++.+..+.=.+ -......-.+..
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 555555555555555555555542 234445555555555555555555555554432111 012222333333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
-.+.|+.+++..+|+...... +--...|+.++++-.++|+.+.++.+|++.+..++.|
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 345555555555555554431 2234455555555555555555555555555554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-06 Score=83.73 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=187.6
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 92 CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFP---DLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
+=|++.+...| .+...|-..|....+.++.++|.++.++++.. ++.- -...|.++++.-...|.-+...++|++
T Consensus 1445 eDferlvrssP--NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSSP--NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcCC--CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34555555444 57788999999999999999999999998753 2211 234677777777778888888999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 041816 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 247 (396)
+.+.. -...+|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.++.+.-
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l----- 1594 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL----- 1594 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-----
Confidence 98863 235678899999999999999999999998862 2467889999999999999999999999988753
Q ss_pred cccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 041816 248 VCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV-- 323 (396)
Q Consensus 248 ~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-- 323 (396)
+. ......-.+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.+..+|+++...++.|-.
T Consensus 1595 --Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1595 --PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred --chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 22 2344555566677899999999999999877544 6678999999999999999999999999998876643
Q ss_pred hhHHHHHHHHHhcCCHHHHHHH
Q 041816 324 VTFNVIMDELCKNGKMDEASRL 345 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~ 345 (396)
..|.-.+..=-+.|+-+.++.+
T Consensus 1672 fffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1672 FFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHhcCchhhHHHH
Confidence 3455555555555665544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-06 Score=83.10 Aligned_cols=305 Identities=10% Similarity=-0.014 Sum_probs=196.0
Q ss_pred cccCChhHHHHHHHHHHhcCCC-----CCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPS-----PPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILIN 150 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~ 150 (396)
...|++++|...++.....-.. ++. ......+...+...|++++|...+++..+.-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3457888888888877543211 111 122223344566789999999999998763211121 23455666
Q ss_pred HHHhcCChhhHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRS----CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCK--P-NVITYSTL 218 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l 218 (396)
.+...|++++|...+.+.... |. ......+..+...+...|++++|...+++..+. |.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 678899999999999888753 11 111334556677788899999999998876553 211 1 23345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhH-----H
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTY-----N 292 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~ 292 (396)
...+...|++++|...+++........+ .......+..+...+...|++++|.+.++......... ....+ .
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 6677888999999999988765431111 01123445556778889999999999998875421110 11111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN-TSTFSTL 364 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l 364 (396)
..+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..++ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 122444568899999998777553211111 112356777888999999999999988753 33322 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 365 MDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 365 i~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..++.+.|+.++|...+.+..+..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 778899999999999999987643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.2e-07 Score=73.27 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhhHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI-LINCFCKMGRVSHGF 162 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~a~ 162 (396)
..++++|++++....+..+ .+......|..+|....++..|-+.|+++... .|...-|.. -...+.+.+.+..|+
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 3468888888888777654 37777888888998999999999999998764 355554432 244556777788888
Q ss_pred HHHHHHHh
Q 041816 163 VVLGRILR 170 (396)
Q Consensus 163 ~~~~~~~~ 170 (396)
.+...|..
T Consensus 99 rV~~~~~D 106 (459)
T KOG4340|consen 99 RVAFLLLD 106 (459)
T ss_pred HHHHHhcC
Confidence 77776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-09 Score=57.91 Aligned_cols=32 Identities=50% Similarity=0.966 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 353 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-07 Score=85.64 Aligned_cols=230 Identities=20% Similarity=0.158 Sum_probs=144.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
|+..|+.+.|- +|.-|.-... |.+-..++.++......++.+.+. .|.+.||..|..+|...|++..
T Consensus 35 Yc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 35 YCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHHhccchHH
Confidence 34445666666 7777754433 356677888888877777776554 5778888888888888888655
Q ss_pred HHHHHHHHH-------hcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 161 GFVVLGRIL-------RSCFTPDAVAF--------------TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 161 a~~~~~~~~-------~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
-..+=+.+. ..|+......+ ...+....-.|-++.+++++..+...... ..... ++
T Consensus 102 fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fL 178 (1088)
T KOG4318|consen 102 FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FL 178 (1088)
T ss_pred HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HH
Confidence 222211121 12221111111 11222223334455555555444322111 01111 12
Q ss_pred HHHHh-cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 220 NGLCR-TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 220 ~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
+-+.. ...+++-..+.+...+ .|+..+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+
T Consensus 179 rqnv~~ntpvekLl~~cksl~e---------~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 179 RQNVVDNTPVEKLLNMCKSLVE---------APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred HHhccCCchHHHHHHHHHHhhc---------CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 22222 2233333333333333 378999999999999999999999999999999998888877777765
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
.++...+..++.-|.+.|+.|+..|+...+..+.+.|.
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 78888888899999999999999999888888877555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-06 Score=72.14 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
.+...|++++|+..+..+.+... ++...+-.|.-++.-.|.+.+|..+-.+.
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777777776665332 45555666666666667777777665554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-06 Score=73.74 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+.. +.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~ 102 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PN 102 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cC
Confidence 456677778888888899999999998887752 3232 456777888888999999999999988764 22
Q ss_pred CHh---hHHHHHHHHhcc--------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 252 NTV---TYTTIIDGLCKE--------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 252 ~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
+.. ++..+..++.+. |++++|.+.|+.+...... +...+..+..... ... ...
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~----- 166 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA----- 166 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH-----
Confidence 222 455555556544 6788888888888765432 2222222211100 000 000
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.....+...|.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|..+++.+...
T Consensus 167 ---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 ---GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011245667889999999999999998752 1224578889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.7e-07 Score=81.60 Aligned_cols=216 Identities=16% Similarity=0.086 Sum_probs=156.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.-..+...+...|-...|+.+++++. .|..+|.+|+..|+..+|..+..+..+. +|+...|-.+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456667777788888888887754 3667788888888888888888877773 567777777777766
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
...-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +....+|-.+.-+..+.++
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhh
Confidence 655567777766654321 22222223344678888888888777664 4566778888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
+..|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 88888888887765433 56778888888888888888888888888776 44566777777777888888888888877
Q ss_pred HHh
Q 041816 349 MIL 351 (396)
Q Consensus 349 m~~ 351 (396)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-05 Score=70.95 Aligned_cols=306 Identities=15% Similarity=0.102 Sum_probs=184.2
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhC--CC--CCCHHhHHHHHHH
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNST--GL--FPDLYTYNILINC 151 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~li~~ 151 (396)
.+..+..+|.-..|+.+.+......+.|+++..+-..-..|.+ .+..++++++-.++... +. ......|..+.-+
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~ 442 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIA 442 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Confidence 3344555566666666666665554333344444333333332 34555555554444331 10 0122223333333
Q ss_pred HHhc-----------CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 152 FCKM-----------GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 152 ~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|... ....++++.+++..+.+.. |..+.-.+.--|+..++++.|.+...+..+.+-..+...|..+.-
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3221 1123455555555554432 333333444456666777777777777777654556777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC-------------------------------C------------------------
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGK-------------------------------F------------------------ 245 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~------------------------ 245 (396)
.+...+++.+|+.+.+......+. +
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 777777777766666544322111 0
Q ss_pred --------------------------c-------cccc--CC------HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 246 --------------------------G-------VVCK--PN------TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 246 --------------------------~-------~~~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
+ .... |+ ...|......+.+.++.++|...+.+.....
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~- 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID- 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-
Confidence 0 0000 11 1123344555666677777776666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHH
Q 041816 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASR--LLELMILRGVNPNTSTF 361 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~ 361 (396)
......|......+...|++++|...|...... .|+ +....++..++.+.|+...|.. ++..+.+.+ +.+...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHH
Confidence 224555666667777888999999999888764 454 5678899999999998888887 999999873 5588999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
..+...+-+.|+.++|.+.|....+.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999987653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-06 Score=78.66 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=170.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
..+...+...|-...|..+++++. .|.-++.+|...|+.++|..+..+..+. +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456677788888889988888654 4567788899999999999988887774 67888888888877777
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
.-+++|.++.+..... +-..+.....+.+++.++.+.|+.-.+.+.- -..+|..+..+..+.++++
T Consensus 471 s~yEkawElsn~~sar-------------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred HHHHHHHHHhhhhhHH-------------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 7778888887765432 1112222233478999999999987765432 6678888888889999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.|.+.|...... .|| ...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|...+....+.|.+++|++.+.+|
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988764 455 6789999999999999999999999999986 556778888888899999999999999998
Q ss_pred HhC
Q 041816 385 ESM 387 (396)
Q Consensus 385 ~~~ 387 (396)
.+.
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-06 Score=73.47 Aligned_cols=185 Identities=12% Similarity=-0.023 Sum_probs=108.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH--H
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--V 178 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 178 (396)
.....+..+...+.+.|++++|...++++.... |+ ...+..+..++.+.|++++|...++++++..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455566677777888888888888888877643 32 135666777888888888888888888776432111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 179 AFTSLIKGLCAE--------SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 179 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
++..+..++... |+.++|.+.|+++.+.. +-+...+..+..... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~------~~~~------------ 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----L------RNRL------------ 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----H------HHHH------------
Confidence 344445555543 67788888888877653 112222222111100 0 0000
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
......+...|.+.|++++|...++...+.... .....+..+..++...|++++|..+++.+..
T Consensus 166 --~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 166 --AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 001123445566667777777777666554321 2345666666777777777777776666654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-09 Score=56.82 Aligned_cols=32 Identities=50% Similarity=0.956 Sum_probs=21.1
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
|+.||..||+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-06 Score=68.84 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=61.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhcCC
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF-CYAND 303 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~~~ 303 (396)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCC
Confidence 344445555555544443 445555555555555555555555555555554333 444455544432 34444
Q ss_pred --HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 304 --WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 304 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.++|..++++..+.+ +-+...+..+...+.+.|++++|...|+++.+.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355555555555543 223445555555555556666666666555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-06 Score=68.95 Aligned_cols=164 Identities=15% Similarity=0.035 Sum_probs=116.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+... ..+-..+...|+-+....+........ .-|.......+....+.|++.+|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 445556666677777777766654322 2355556667777888888888888888877665 457888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+|.+.|++++|..-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++....... ..|..+-..+......
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-------~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-------AADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------CCchHHHHHHHHHHhh
Confidence 8888888888888888877763 2356667777777888888888888888877764 4467777777777788
Q ss_pred cCCHHHHHHHHHHHh
Q 041816 266 EGFVDKAKELFLQMK 280 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~ 280 (396)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888877765543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-06 Score=80.95 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=118.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
.++..+-.|..+..+.|++++|+.+++...+.. || ......+...+.+.+++++|+..+++.++..+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 578899999999999999999999999998854 55 556777888999999999999999999998754 78888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999843 4458889999999999999999999999998764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-05 Score=74.11 Aligned_cols=255 Identities=14% Similarity=0.078 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
..++++.+++.++.++..|++..|- .--|+..++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4678899999999888766555443 34567778999999999999988656789999999999999999999999998
Q ss_pred HHHhcCCC-------------------CCHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHH-
Q 041816 167 RILRSCFT-------------------PDAVAFTSLIKGLCAE-----------------------SRIMEAAALFTKL- 203 (396)
Q Consensus 167 ~~~~~~~~-------------------~~~~~~~~l~~~~~~~-----------------------g~~~~a~~~~~~~- 203 (396)
.....-.. -...++..++..+-.. ++..++.+....+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 87754211 0112222233222200 0111111111111
Q ss_pred -------HhcC----CC-------cc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 204 -------KAFG----CK-------PN------VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 204 -------~~~g----~~-------~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
...| ++ |+ ...|......+.+.+..++|...+.+..... +.....|...
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-------~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-------PLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-------hhhHHHHHHh
Confidence 0011 00 11 1235566677888888899988888877764 5677788888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC--LLIEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
...+...|++++|.+.|......++. ++....++...+.+.|+..-|.. ++.++.+.+ +.+...|-.+...+-+.|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 88899999999999999999877554 67788999999999999888888 999999875 457889999999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 041816 338 KMDEASRLLELMILR 352 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~ 352 (396)
+.+.|.+.|....+.
T Consensus 769 d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 769 DSKQAAECFQAALQL 783 (799)
T ss_pred chHHHHHHHHHHHhh
Confidence 999999999988764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-05 Score=70.65 Aligned_cols=207 Identities=10% Similarity=0.116 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----------------------ChHHHHHHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----------------------HTIVALNLF 235 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------------------~~~~a~~~~ 235 (396)
..|.+|.+.|.+.|.+++|..+|++.... ..++.-|+.+.++|+.-. +++-.+.-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 45677777777777777777777776554 223333333333333211 112223333
Q ss_pred HHHHhcCCCCc--c---cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHhcCCH
Q 041816 236 EEMANGNGKFG--V---VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD------VVTYNSLIHGFCYANDW 304 (396)
Q Consensus 236 ~~~~~~~~~~~--~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~~~~ 304 (396)
+.+.+.....- + .-+.++..|..-+. ...|+..+-...|.+.... +.|. ...|..+.+.|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33333221000 0 00122233332222 2235566666666666542 2221 23577777888888888
Q ss_pred HHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CCC-------CHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMILRG----------VNP-------NTSTFSTL 364 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----------~~p-------~~~~~~~l 364 (396)
+.|..+|++..+-..+-- ..+|.....+=.++.+++.|+++.+....-. ..| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888888776432211 3455555566667777888888777665321 111 23455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 365 MDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 365 i~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
++.--..|-++....+|+++.+..+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc
Confidence 6655667788888888888877544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-06 Score=67.76 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=63.4
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH-HhcCC--hHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL-CRTGH--TIVA 231 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~g~--~~~a 231 (396)
.++.+++...++..++..+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3444555555555555442 255555555556666666666666666555543 22445555555442 44444 3555
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+.+.+.
T Consensus 130 ~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666555554 344555555555555555555555555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-05 Score=69.74 Aligned_cols=300 Identities=16% Similarity=0.107 Sum_probs=166.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+++++|.+..++++..++. +...+..-+-++.+.++|++|+.+.+.-... ..+..-+-.-.-+..+.+..++|+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHH
Confidence 457799999999999887754 6666666777888899999999665542210 111111112223344778889998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---------------------------HHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---------------------------VITY 215 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---------------------------~~~~ 215 (396)
..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+-. ..+|
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 8887222 12344666667788889999999999998865542200 0122
Q ss_pred HHH---HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh----------hHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 216 STL---INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV----------TYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 216 ~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..+ .-.+...|++.+|+++++.....+...- ..-|.. .-.-|.-++...|+.++|..++......
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l--~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKL--EDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhh--cccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 222 2235567888888888887744331100 011110 1122334556678888888888887776
Q ss_pred CCCCChhh----HHHHHHHHHhcCCHH----------------HHHHHHHH--------------H-----------H-H
Q 041816 283 NINPDVVT----YNSLIHGFCYANDWN----------------EANCLLIE--------------M-----------M-D 316 (396)
Q Consensus 283 ~~~p~~~~----~~~li~~~~~~~~~~----------------~a~~~~~~--------------~-----------~-~ 316 (396)
... |... -|.|+..-....-++ .++..+.. | . .
T Consensus 254 ~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 254 NPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred cCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 543 4321 222221110000000 00000000 0 0 0
Q ss_pred -CCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHH
Q 041816 317 -QGVQPDVVTFNVIMDELCKN--GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV--------SME 385 (396)
Q Consensus 317 -~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~ 385 (396)
.+..|. ..+.+++..+.+. ..+.+|.+++...-+..-.-...+.-.++......|+++.|.+++. .+.
T Consensus 333 lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 333 LPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh
Confidence 011121 2233333333221 2356677777766654222235566677788889999999999999 777
Q ss_pred hCCCCCCcc
Q 041816 386 SMGCKHTVF 394 (396)
Q Consensus 386 ~~g~~p~~~ 394 (396)
+.+..|..|
T Consensus 412 ~~~~~P~~V 420 (652)
T KOG2376|consen 412 EAKHLPGTV 420 (652)
T ss_pred hhccChhHH
Confidence 777777654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-06 Score=68.53 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
|..+ ..+-..+...|+-+....+........ +.|.......+....+.|++..|+..+.+..... ++|...
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-------p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-------PTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-------CCChhh
Confidence 3444 556666777777777777776644332 3455566667888888888888888888888775 778888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
|+.+.-+|.+.|++++|..-|.+..+.... +...++.+...+.-.|+++.|..++......+ .-|...-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhh
Confidence 888888888888888888888888776444 66677888888888888888888888877654 2356667777778888
Q ss_pred cCCHHHHHHHHHHHH
Q 041816 336 NGKMDEASRLLELMI 350 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~ 350 (396)
.|++++|.++...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888888765443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-05 Score=76.02 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=115.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
+..+...+..|.....+.|..++|+.+++...+.. +-+......+...+.+.+++++|+..+++..... +.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCC
Confidence 34467788888888888888888888888888763 3346667777888888888888888888888765 556
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
......+..++.+.|++++|..+|+++...+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~-- 229 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL-- 229 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH--
Confidence 667777777888888888888888888774432 46778888888888888888888888877642 34445555443
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 041816 333 LCKNGKMDEASRLLELMI 350 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~ 350 (396)
+++..-..+++.+.
T Consensus 230 ----~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 ----VDLNADLAALRRLG 243 (694)
T ss_pred ----HHHHHHHHHHHHcC
Confidence 23333444555444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-05 Score=66.40 Aligned_cols=287 Identities=15% Similarity=0.112 Sum_probs=169.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNL-LFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~ 163 (396)
.+++|++++.+++..++ .....|. +.-+|.+..-++-+.++++.-.+. .||. ...|.......+.=+-..|.+
T Consensus 166 HYQeAIdvYkrvL~dn~---ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNP---EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHhcCh---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 47899999999987543 3444444 444667777788888887776653 2443 333333332222211111111
Q ss_pred HH--------------HHHHhcCC------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH
Q 041816 164 VL--------------GRILRSCF------------TP-----DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212 (396)
Q Consensus 164 ~~--------------~~~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 212 (396)
-. +.+.+.+. -| -+..-..|+-.|.+.+++.+|..+.+++.- .++
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP 316 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTP 316 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CCh
Confidence 11 11112110 00 112223445567788999999988877642 233
Q ss_pred HHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC
Q 041816 213 ITYSTLINGLCRTG-------HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285 (396)
Q Consensus 213 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 285 (396)
.-|-.-.-.++..| ...-|.+.|+-.-..+. ...++..-.++...+.-..++++.+-.++.+...-..
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~-----ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL-----ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 32322222223333 34455566655544431 1223344556666677777889998888888765444
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 041816 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-T 363 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ 363 (396)
|...--.+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.++++.|..++-++.. +.+..+.- .
T Consensus 392 -dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLql 466 (557)
T KOG3785|consen 392 -DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQL 466 (557)
T ss_pred -cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHH
Confidence 4444445788999999999999999887654433 44555 5567888999999998887765542 22333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
+..-|.+.+.+--|-+.|+.++..+..|
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 4457788899988999999988765333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-05 Score=70.84 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=197.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
+++...+...+.+++..+.. ..+.....-.+...|+-++|.+......+..+. +.+.|..+.-.+....++++|+..
T Consensus 21 kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 45677777777777765553 344444444566779999999999988876543 677888888888888999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (396)
|...+..+.. |..++.-+.-.-+..|+++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999988744 78888888888888899998888888877753 33566788889999999999999999999887652
Q ss_pred CcccccCCHhhHHHHH------HHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 245 FGVVCKPNTVTYTTII------DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
..|+...+.... ......|..++|.+.+..-...-+. ....-..-...+.+.+++++|..++..++..+
T Consensus 175 ----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 175 ----TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 135665554433 3345678888888877665543211 22333445567788999999999999999864
Q ss_pred CCCCHhhHHHH-HHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 319 VQPDVVTFNVI-MDELCKNGKMDEAS-RLLELMILRGVNPNTSTFSTL-MDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 319 ~~p~~~~~~~l-~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
||..-|... ..++.+..+.-++. .+|....+. .|....-..+ +.......-.+..-+++..+.+.|+.+
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 776655544 44444344444444 666666553 1211111111 111112222334445666677777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.1e-06 Score=78.73 Aligned_cols=225 Identities=11% Similarity=0.089 Sum_probs=116.2
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
....|.+...|..|+..+...+++++|.++.+...+.. |+.. .|..+...+.+.++..++..+ .
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------- 88 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N----------- 88 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h-----------
Confidence 33455788889999999999999999999999777643 4443 333333356666665554443 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
++.......++..+..+...|.+.+ -+..++..+..+|-+.|+.++|..+|+++.+.+ +.|..+.|.
T Consensus 89 ----~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn 155 (906)
T PRK14720 89 ----LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKK 155 (906)
T ss_pred ----hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHH
Confidence 2222222233333333333333322 233344455555555555555555555555543 344455555
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CC
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-------------------GV 319 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~ 319 (396)
+.-.|... +.++|.+++.+.... +...+++.++..+|.++... |.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc
Confidence 55555555 555555555444332 22222333333333333221 11
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 320 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
.--..++-.+...|-..++++++..+++.+.+.. +-|.....-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 1223344445556666667777777777776652 235555555555554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0001 Score=67.29 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----Ccccc
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVVC 249 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~ 249 (396)
..|..+.+.|-..|+++.|..+|++..+-..+.- ..+|.....+=.+..+.+.|+++.+........ +....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3566777778888888888888888776532211 345666666666777888888887776543211 00001
Q ss_pred c------CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041816 250 K------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 250 ~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
+ .+...|...+..--..|-++....+|+.+.+..+. ++.........+-.+.-++++.+++++-+..--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 23345666677666778889999999999876554 4443333333444556677777777665544333443
Q ss_pred -hhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Q 041816 324 -VTFNVIMDELCK---NGKMDEASRLLELMILRGVNPNTSTFSTLM--DGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 324 -~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 385 (396)
..|+..+.-+.+ ...++.|..+|++.++ |.+|...-+--|+ ..=-+.|....|+.++++..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355555555443 2357788888888887 5655432222221 11134577777777777754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-05 Score=77.54 Aligned_cols=276 Identities=12% Similarity=-0.022 Sum_probs=174.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----HH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGL------FPDL--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AV 178 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 178 (396)
......+...|+++++..++......-- .+.. .....+...+...|++++|...+++..+.....+ ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999988754210 1111 1222233455678999999999998876322222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc-ccCC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF----GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPN 252 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 252 (396)
..+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++........+.. ....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4456667778899999999999887643 211 112345566778889999999999998876532111100 0112
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHh--
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDK----NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVV-- 324 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~-- 324 (396)
...+..+...+...|++++|...+++.... +.......+..+...+...|++++|...+.++.... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334555666777889999999999887542 111123345556677889999999999998875421 111110
Q ss_pred hH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 325 TF--NVIMDELCKNGKMDEASRLLELMILRGVNPN---TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 325 ~~--~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.. ...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10 1122445568999999999877654211111 11234566778899999999999998765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-05 Score=62.53 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+.. +..+.+-|..+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---------ed~tLtQLA~a 178 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---------EDATLTQLAQA 178 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHH
Confidence 3445556666666666555411 22233333444555556666666666665543 33444444444
Q ss_pred Hhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 041816 263 LCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338 (396)
Q Consensus 263 ~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 338 (396)
+.+ .+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++..... .-+..+...++-+-...|.
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 332 34556666666666543 34455555666666666666666666666665543 2234444444444344443
Q ss_pred H
Q 041816 339 M 339 (396)
Q Consensus 339 ~ 339 (396)
.
T Consensus 257 d 257 (299)
T KOG3081|consen 257 D 257 (299)
T ss_pred C
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.1e-05 Score=62.25 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=120.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-A 198 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~ 198 (396)
.|.+..++..-....... -+...-..+.++|...|.+..... ++.... .|.......+.......++.+.-. +
T Consensus 21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 355555555444433221 233333344555555555443322 222211 223333333333333333333322 3
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333223232333333445666777777766666521 122333333444555666777777777
Q ss_pred HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 279 MKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 279 m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
|.... +..|.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+.
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 76542 55555555555532 34566677777776553 35666666666667777777777777777766652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 041816 355 NPNTSTFSTLMDGFCLTGRVNH-AKELFVSME 385 (396)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 385 (396)
.-++.+...+|..-...|...+ ..+.+.++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3355555555555555554433 233444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-06 Score=63.58 Aligned_cols=119 Identities=10% Similarity=-0.060 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 92 CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
.+|++.++..| ..+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.
T Consensus 14 ~~~~~al~~~p-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVDP-----ETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666655432 235556778888999999999999988765 347778888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
.+ .+...+..+..++...|++++|+..|++..+.. +.+...|...
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~ 132 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIR 132 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 64 478888889999999999999999999988764 2244444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6e-06 Score=63.12 Aligned_cols=91 Identities=10% Similarity=-0.050 Sum_probs=41.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+...|++++|...|+......+. +...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 334444444444444444444443321 44444444444444444444444444444432 2234444444444444444
Q ss_pred hHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMAN 240 (396)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (396)
+++|...|+....
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-05 Score=67.60 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHh---cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhH
Q 041816 87 PNEAFCIFDYMLN---MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 87 ~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+..-.+.|+++.. .+..+|.- ++.-=.-..++.++...-+.++..+ -.|+...+...+.+......-..+
T Consensus 219 p~gM~~ff~rl~~~~~~~~~~p~y-----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~ 293 (484)
T COG4783 219 PQGMPEFFERLADQLRYGGQPPEY-----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQA 293 (484)
T ss_pred chhHHHHHHHHHHHHhcCCCCChH-----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccch
Confidence 4445577777763 33332221 1111112244555555555654332 124445555555544443333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..++.+..+. .-...-|. ..-.+...|++++|+..++.+...- +-|...+......+.+.++.++|.+.++++...
T Consensus 294 ~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 294 ADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred HHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 3333333221 11222232 2233445677788888887777652 345666666777777888888888888877775
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
. +.....+-.+..+|.+.|++.+|+++++........ |+..|..|.++|...|+..++..-..+....
T Consensus 370 ~-------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---- 437 (484)
T COG4783 370 D-------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYAL---- 437 (484)
T ss_pred C-------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHh----
Confidence 4 333566667777778888888888887777766544 7777888888888888777777777666543
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 322 DVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 322 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.|+++.|...+....+.
T Consensus 438 --------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 --------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------CCCHHHHHHHHHHHHHh
Confidence 25556666665555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-05 Score=67.57 Aligned_cols=214 Identities=15% Similarity=0.033 Sum_probs=147.2
Q ss_pred ChhHHHHHHHHHH---hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.....++|+++. ..+-.|+.+..+. =.-..++.++...-+.+...+ -.|+.......+........-..+
T Consensus 218 dp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Plp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~ 293 (484)
T COG4783 218 DPQGMPEFFERLADQLRYGGQPPEYLLTH----PLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQA 293 (484)
T ss_pred CchhHHHHHHHHHHHHhcCCCCChHHhcC----CCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccch
Confidence 3455677888886 3343444432221 112234444444445544321 234555566666554444333333
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
-.++.+..+ +.....+--....+...|+.++|+..++.+.... |.|...+......+.+.++.++|.+.+
T Consensus 294 ~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 294 ADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333333332 1223334444556778899999999999988874 667778888899999999999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+...... .....-.+..++.+.|++.+|..+++...... +-|...|..|..+|...|+..++.....++..
T Consensus 364 ~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 364 KKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999987433 36677788899999999999999999988763 66889999999999999999999998888764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00019 Score=64.82 Aligned_cols=117 Identities=20% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI--------EMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
+..+.+++...-+....-.....-.+++.....|+++.|.+++. .+.+.+..|. +...++..+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 33444444444333222223444555666677788888887777 4444333343 3344555566666666
Q ss_pred HHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 341 EASRLLELMILR--GVNPN----TSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 341 ~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.|..++.+.+.. .-.+. ..++.-+...-.+.|+.++|..+++++.+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 666666555532 00111 122222333334567777777777777663
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-05 Score=65.83 Aligned_cols=261 Identities=13% Similarity=0.126 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH-HHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS-LIKGLC 188 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 188 (396)
+...+..+.+..++++|++++....++. +.+......+..+|....++..|-..++++-... |...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 6677777888899999999999887765 2277788889999999999999999999998763 44554443 345667
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLING--LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+.+.+.+|+++...|.+. ++...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKE 157 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeecc
Confidence 889999999999888753 333222222232 345788888888888876433 445555566667789
Q ss_pred CCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHhh-------
Q 041816 267 GFVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-------------PDVVT------- 325 (396)
Q Consensus 267 g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~~------- 325 (396)
|++++|.+-|+...+ .|.. ....|+..+..| +.+++..|++...+++++|++ ||+..
T Consensus 158 gqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 999999999999876 4555 566788777655 678999999999999998764 22211
Q ss_pred -HHHHH-------HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 326 -FNVIM-------DELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 326 -~~~l~-------~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
-+.++ ..+.+.|+++.|.+.+-.|--+ .-..|++|...+.-.- ..|++-+..+-+.-+...+
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 12233 3345678888888888777532 2344777776653222 2345555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00051 Score=65.20 Aligned_cols=224 Identities=15% Similarity=0.182 Sum_probs=155.7
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 159 (396)
+..+++..|++..+++.+..|..+ |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 455679999999999998776533 3334444 46789999999999988776644 8889999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----------ChH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----------HTI 229 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------~~~ 229 (396)
+|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+. .+-+...+-++++.+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 456777778888899988876544443333332 2345555555665555422 123
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH-HHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL-QMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
-|.+.++.+.+.++.. -+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..
T Consensus 172 LA~~m~~~~l~~~gk~-----~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKI-----ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred HHHHHHHHHhccCCcc-----chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 4666777776654211 122222223334556788999999994 4444433345555567778888999999999
Q ss_pred HHHHHHHHCC
Q 041816 309 CLLIEMMDQG 318 (396)
Q Consensus 309 ~~~~~~~~~~ 318 (396)
++-.++...|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9999999876
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00031 Score=59.39 Aligned_cols=297 Identities=13% Similarity=0.070 Sum_probs=200.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------------HHh--H
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD------------LYT--Y 145 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------------~~~--~ 145 (396)
|+.-|+-..|+.-+.+.++..| |.. .--.-...+.++|.+++|..-|+..++.....+ ... .
T Consensus 82 yLAmGksk~al~Dl~rVlelKp---DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 82 YLAMGKSKAALQDLSRVLELKP---DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HhhhcCCccchhhHHHHHhcCc---cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 4555666666666666666432 221 222234457788999999999998887642111 111 1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
...+..+...|+...|++....+++.. +.|...+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 223445567789999999999999875 4588889999999999999999998887776654 33566777788888999
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHH-----------H--HHHHhccCCHHHHHHHHHHHhhCCCCCChhh--
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT-----------I--IDGLCKEGFVDKAKELFLQMKDKNINPDVVT-- 290 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-- 290 (396)
|+.+.++...++..+.+ ||...+-. | +......++|.++.+-.+...+.........
T Consensus 237 gd~~~sL~~iRECLKld--------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~ 308 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLD--------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN 308 (504)
T ss_pred hhHHHHHHHHHHHHccC--------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee
Confidence 99999999999988854 44432211 1 2234456788888888888776654423333
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--
Q 041816 291 -YNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD-- 366 (396)
Q Consensus 291 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-- 366 (396)
+..+-.++...+++.+|+..-.++.+. .|| +.++.--..+|.-..+++.|+.-|+...+.. +.+...-..+=.
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRAREGLERAK 385 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 344556677888999999999999874 454 7888888999999999999999999888742 112221111111
Q ss_pred ---------------HHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 367 ---------------GFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 367 ---------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
+--+.-.-.+..+.|++|-.. +.||..
T Consensus 386 rlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 386 RLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred HHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHh-cCCccc
Confidence 112333456677778887653 566653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00019 Score=58.11 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=113.5
Q ss_pred ChhHHHHHHHHHHh---CC-CCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLNS---TG-LFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~~---~~-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|..+++.+...- +-+..+-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555532 12 334433 34445556666777777777777766553 22222222222334456777778
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
+++++.+.+.+ +.|.+++..-+...-..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.+
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 88887777765 446666666666666677777777777777665 4677778888888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 041816 277 LQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQ 317 (396)
Q Consensus 277 ~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 317 (396)
+++.-..+. ++..+..+...+...| +++-+.++|.+..+.
T Consensus 178 EE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 178 EELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 877654322 4444455554443333 455677777777664
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.5e-05 Score=73.52 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=113.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...+++++|+++.+...+..|. ....|-.+...+.+.++.+++..+ .+.. ......++..
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~--~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~~~~~~~~~~ 101 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKK--SISALYISGILSLSRRPLNDSNLL--NLID---------------SFSQNLKWAI 101 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCc--ceehHHHHHHHHHhhcchhhhhhh--hhhh---------------hcccccchhH
Confidence 44567899999999988886654 445555555567777776666555 2222 1111122211
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
...+...+...+ -+..++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... ++++|+.++.+...
T Consensus 102 ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 122222222211 123344445555555555555555555555544 33444555555555555 55555555554443
Q ss_pred cCCCCcccccCCHhhHHHHHHHH-----hccCCHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGL-----CKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.. -+..-|+.+.... ....+++.-..+.+.+... |..--..++.-+-..|-..++|+++..+++.+
T Consensus 178 ~~--------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 178 RF--------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HH--------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 21 0000111111100 1112333333444444332 22234456666777788888999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~ 334 (396)
.+.. +-|.....-++.+|.
T Consensus 250 L~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhcC-CcchhhHHHHHHHHH
Confidence 8864 335566667777765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=60.56 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=81.2
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 93 IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
.++.++...+. +......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555554443 45556667777788888888888888887754 3366777778888888888888888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
+.+...+..+...+...|++++|.+.|++..+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 336677777778888888888888888887775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00011 Score=68.87 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=127.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|-.++|+.++++..+ |..|-..|...|.|++|.++-+.-.+.. -..||.....-+...++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 345666666666543 3334445555677777766655432221 223455555555566666666666
Q ss_pred HHHHHh----------cCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 165 LGRILR----------SCF---------TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 165 ~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
|++.-. ..+ ..|...|.--...+-..|+.|.|+.+|...++ |..+++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 653211 100 01222222222223334455555555544332 34444555555
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN--- 302 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--- 302 (396)
|+.++|-++-++ .-|....-.|.+.|...|++.+|...|-+... +...|+.|-.++
T Consensus 952 Gk~~kAa~iA~e------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred cCchHHHHHHHh------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 555555554443 23566777788888888888888888766542 223333222111
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCC--CCCHHH
Q 041816 303 ------------DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE--------LMILRGV--NPNTST 360 (396)
Q Consensus 303 ------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~--~p~~~~ 360 (396)
+.-.|-++|++. |. -+...+..|-+.|.+.+|+++-= +++...+ ..|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 222222333221 11 12334556778888888776531 1222222 336677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 361 FSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.+.-.+.++...++++|..++-..
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777777777777766544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=60.24 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+...+...|++++|...|+.+...+ +.+...|..+...+.+.|++++|...++...... +.+...+..+..
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~ 93 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHH
Confidence 33333444444444444444443332 2233334444444444444444444444443332 223333333444
Q ss_pred HHhccCCHHHHHHHHHHHhh
Q 041816 262 GLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~ 281 (396)
.|...|++++|...|+...+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-07 Score=50.38 Aligned_cols=34 Identities=47% Similarity=0.776 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 5777777788888888888888888777777763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-05 Score=67.12 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=104.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556667777899999999999999874 33 55668888888899999999999998653 446777777888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+.++.+.|+++.+++... .+-+..+|..|..+|...|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999986 34456799999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=68.78 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=152.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCCCHHhHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-G--------LFPDLYTYNILINC 151 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~p~~~~~~~li~~ 151 (396)
|+.-|+.+.|.+-.+.+ .+...|..+...|.+..+.+-|.-.+-.|... | -.++ .+=.-+.-.
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 66778899998887776 35578999999999988888777666555321 1 1122 222223333
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
..+.|.+++|+.+|.+-.+. ..|=..|-..|.+++|.++-+.=.+..+ ..||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 45778899999999887643 3455567778999999888765333222 24555566666667888888
Q ss_pred HHHHHHHHhcCCCC-----------c--ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 232 LNLFEEMANGNGKF-----------G--VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 232 ~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
++.|++........ . .--..|...|.-........|+.+.|+.+|....+ |.++++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 88877643211000 0 00012333444444445556666666666655442 45566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
|-.|+.++|-.+-++- -|....-.|.+.|-..|++.+|..+|.+.. ++...|+.|-.++.
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDM 1008 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCH
Confidence 6677777776665542 244455567778888888888888887664 34555555544433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0016 Score=58.52 Aligned_cols=131 Identities=12% Similarity=0.162 Sum_probs=90.4
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
.+|..++..-.+..-++.|..+|.+..+.+..+ ++..+++++..+| .++.+-|.++|+--++. ..-+..--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 456666777777777888888888887766665 6666777777665 46777888888765543 11222333556667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 333 LCKNGKMDEASRLLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+...++-..|..+|++....++.++ ..+|..+++-=..-|+...+.++-+++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777888888888888887755544 46788888777777888888777766653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0009 Score=64.46 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=42.9
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
...|+.+..+-.+.|...+|++-|-+.- |+..|..+++...+.|.|++-.+++....+..-.|... +.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 3455555555555555555555442221 44555556666666666665555555555444333332 245555
Q ss_pred HHhcCCHHHHHH
Q 041816 333 LCKNGKMDEASR 344 (396)
Q Consensus 333 ~~~~g~~~~A~~ 344 (396)
|++.+++.+.++
T Consensus 1176 yAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1176 YAKTNRLTELEE 1187 (1666)
T ss_pred HHHhchHHHHHH
Confidence 555555544433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-05 Score=69.54 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=63.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
++..+...++++.|.++++++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555666666666655543 22 22234555555555555555555555432 2344444444455555566
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
.+.|+.+.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666655542 3344456666666666666666655555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=48.63 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00052 Score=55.62 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=140.8
Q ss_pred cCChhHHHHHHHHHHhcCCC---CCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCh
Q 041816 84 AITPNEAFCIFDYMLNMRPS---PPPL-TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRV 158 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~ 158 (396)
..++++.++++..++..... .++. ..|..++-+....|+.+.|...++++...- |... .-..-.-.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34689999999988754332 1333 245566667778899999999999987753 4333 222222235567999
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|+++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999987 447777777777777788888888888877765 4669999999999999999999999999999
Q ss_pred HhcCCCCcccccCCHhhHHHHHHHHhcc---CCHHHHHHHHHHHhhCC
Q 041816 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKE---GFVDKAKELFLQMKDKN 283 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 283 (396)
.-.. |-+...+..+...+.-. .+...+.+.|.+..+..
T Consensus 181 ll~~-------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8864 45555666666655443 46778889999888764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00027 Score=67.81 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=75.0
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+.++-+++|+.+|+... .+....+.|+.- -+..+.|.++-++.. .+..|..+..+-.+.|.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 34455788888888752 233344444432 244555555544432 344566677766666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
++-|-+. .|+..|.-+++...+.|.+++-.+++...++..-.|.+ -+.|+-+|++.++..+..++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHH
Confidence 6555332 25566666777777777777777766666655444443 34566666666666554443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-05 Score=57.08 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD---VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV--VTFNV 328 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ 328 (396)
..|..++..+ ..++...+.+.++.+...... + ....-.+...+...|++++|...|+.+......|+. ...-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4555566655 488999999999999886432 2 233344567788999999999999999987633322 24455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
+...+...|++++|+..++..... ......+....+.|.+.|+.++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999999775443 345567778889999999999999999864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00011 Score=56.35 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC---HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD-- 287 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 287 (396)
..|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3455555555 4778888888888888765 223 23344456778888999999999998887653332
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
......+...+...|++++|+..++..... ......+....+.|.+.|+.++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234455677788889999999888664332 234456677788888999999999888764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=47.36 Aligned_cols=31 Identities=45% Similarity=0.839 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 321 (396)
|+.+|.+|++.|++++|.++|.+|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3444444444444444444444444444433
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00097 Score=59.78 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
.+.+.+.|++..|+..|.++.... |.|...|.....+|.+.|.+..|++--+...+.+.. ....|..=..++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al 436 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAAL 436 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Confidence 334445555555555555555543 444555555555555555555555544444443211 222232223333
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMMD 316 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~ 316 (396)
....+|++|.+.|.+..+
T Consensus 437 ~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445555555555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0012 Score=63.60 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=67.1
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH--HHHHHHh
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI--LINCFCK 154 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--li~~~~~ 154 (396)
.|..+..+++..+|+.-|+...+..| .|...|..+..+|...|++..|+++|++.... .|+. +|.. ....-+.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHH
Confidence 67889999999999999999988665 59999999999999999999999999988764 3432 2222 2223445
Q ss_pred cCChhhHHHHHHHHH
Q 041816 155 MGRVSHGFVVLGRIL 169 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~ 169 (396)
.|++.+|+..+....
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 677777666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-06 Score=46.76 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNP 356 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 356 (396)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00056 Score=65.68 Aligned_cols=217 Identities=16% Similarity=0.079 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
+...|+..|-+..+.... -...|..|...|...-+...|.+.|++..+.. ..+...+......|+...++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 355555555555554322 35567778888887778888888888887764 3466777888888888888888888744
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
...+... ...-...|....-.|.+.++...|..-|+......+. |...|..+..+|...|.+..|.++|.++..
T Consensus 551 ~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 551 RAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4333221 0011122333445567778888888888888776655 777888888888888888888888887766
Q ss_pred CCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 317 QGVQPDVVTFNVI--MDELCKNGKMDEASRLLELMILR------GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 317 ~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
. .|+. +|... .-.-+..|++.+|...++..+.. +..--..++-.+...+...|-...|.+++++-
T Consensus 625 L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 625 L--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred c--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3 3432 22222 22345667888888777766542 11112233333333344445444555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0032 Score=60.04 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=154.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC--FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
...+++.+|++...++.+.. |+.. |..++.+ ..+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45688999999999987753 5554 4444454 46889999999999888776655 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC-C------
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG-F------ 268 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~------ 268 (396)
|..+|++.... .|+......+..+|.+.+.+.+-.+.--++-+. .+.+...+-.+++.+.+.- .
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999876 567777777888888888776544444343333 3455666666666665431 1
Q ss_pred ---HHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 041816 269 ---VDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLL-IEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343 (396)
Q Consensus 269 ---~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 343 (396)
..-|.+.++.+.+.+ .--+..=.......+...|.+++|..++ ....+.-..-+...-+.-++.+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234556666666543 1112222222233445678899999998 34444433444555567778888899999999
Q ss_pred HHHHHHHhCC
Q 041816 344 RLLELMILRG 353 (396)
Q Consensus 344 ~~~~~m~~~g 353 (396)
++-.++..+|
T Consensus 247 ~l~~~Ll~k~ 256 (932)
T KOG2053|consen 247 ELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHhC
Confidence 9988888875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.3e-05 Score=66.14 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=92.6
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 327 (396)
+.+......++..+....+.+++..++...... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777777777778888888888877654 222234455688888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 328 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
.|++.+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888776666667666666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00066 Score=63.19 Aligned_cols=192 Identities=14% Similarity=0.146 Sum_probs=118.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
.+....+.|.+|+.+++.+..... -..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 334455677777777777766532 2334666777788888888888777542 23455677788888888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
.|.++-.+... .......|-+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+..++
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----------~p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----------EPD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----------Cch-----HHHHHHHhhCcchHHHH
Confidence 88877766543 23445556555556666777777766664432 232 24566777777777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
+.++-.... -..|.-.+..-+-..|+...|..-|-+.. -|.+.+++|-..+.+++|.++-
T Consensus 872 lv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 872 LVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 666543221 22344555666667777777776665443 2445556666666666665553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00038 Score=64.70 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
+.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++.|.++|-+.. .++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------------~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------------LFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------------hhHHHHHHH
Confidence 444556677888888888777653 233456777788888888888888876532 345567788
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
.+.|+|++|.++-.+.. |.......|-.-..-.-+.|++.+|.+++-
T Consensus 802 ~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 88888888888766553 333344555555555556666666665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00038 Score=55.15 Aligned_cols=88 Identities=8% Similarity=-0.027 Sum_probs=66.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD--LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++.... +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 4555677788888888999999999998876542222 357788888889999999999999988876433 5666777
Q ss_pred HHHHHHhcCCH
Q 041816 183 LIKGLCAESRI 193 (396)
Q Consensus 183 l~~~~~~~g~~ 193 (396)
+...+...|+.
T Consensus 112 lg~~~~~~g~~ 122 (172)
T PRK02603 112 IAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHcCCh
Confidence 77777776663
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.8e-06 Score=44.13 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGC 389 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 389 (396)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666666553
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=65.54 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+.+.+......++..+....+++++..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.=...| +
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG------i 134 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG------I 134 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc------c
Confidence 34456667777777777777788888888887765 221223455688888888888888888888877777 7
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
-||..++|.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 135 F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 135 FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7888888888888888888888888888877666655667776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=51.93 Aligned_cols=96 Identities=10% Similarity=-0.026 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PDAVAFTSLIKG 186 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 186 (396)
..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...++.+...... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555432210 00123333444444555555555555544443211 112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~ 206 (396)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444555555554444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 041816 218 LINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+...+...+++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444433333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=51.40 Aligned_cols=77 Identities=17% Similarity=0.357 Sum_probs=52.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCC--------hhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGR--------VSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- ..+.+.+|++|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566888888888888888888 7888888888887765432 2344556666666666666666666
Q ss_pred HHHHHH
Q 041816 183 LIKGLC 188 (396)
Q Consensus 183 l~~~~~ 188 (396)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=1e-05 Score=55.54 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
|+++.|+.+|+++....+..++...+..+..++.+.|++++|+.++++ .+.+. .+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556677777777766555312344455566666677777777777666 22111 1223333445666666777766666
Q ss_pred HHH
Q 041816 165 LGR 167 (396)
Q Consensus 165 ~~~ 167 (396)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0002 Score=61.45 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=101.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG-FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788899999999999999999999986532 244555555444 33356777799999999875 45677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 333 LCKNGKMDEASRLLELMILRGVNPNT---STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.+.|+.+.|+.+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999976 33333 58999999889999999999999998863
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00045 Score=50.78 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=42.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMGR 157 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~ 157 (396)
+...|++++|+..|+.+....+.. .....+..+..++.+.|++++|.+.|+.+...... .....+..+..++.+.|+
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence 344455555555555555443321 11233444555555555555555555555442211 012334444455555555
Q ss_pred hhhHHHHHHHHHhc
Q 041816 158 VSHGFVVLGRILRS 171 (396)
Q Consensus 158 ~~~a~~~~~~~~~~ 171 (396)
.++|...++++.+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 92 KEKAKATLQQVIKR 105 (119)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=50.32 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+........ +..++..+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 75 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHH
Confidence 334444555555555555555554432 223344444555555555555555555554443222 223444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~ 315 (396)
..+...|++++|...+....
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 45555555555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00033 Score=55.31 Aligned_cols=115 Identities=10% Similarity=-0.054 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhhHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP--DLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
+..+...+..+.+..........|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444555554333332345667777888888899999999988887643222 234677788888888888888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLC-------AESRIMEAAALFTK 202 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 202 (396)
++...+... .....+..+...+. ..|+++.|...+++
T Consensus 95 ~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888877532 23455555665655 56666654444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=50.59 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNG--------KMDEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
.+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++..+
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3444444444444444444 444444444444433321 2233445555555555555555555555544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00037 Score=59.87 Aligned_cols=129 Identities=9% Similarity=0.050 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG-LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
+|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555556665555332 1122333332222 12234444455555555543 233445555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCC---HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPN---TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.+.++.+.|..+|+.....- +++ ...|...+..-.+.|+.+.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555431 111 13555555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0077 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
.+.....+++++.....--..+|-.+|+...+..-+..|..+|.+..+.+..+ ++.+.++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 33444455555443211123345556666666666777777777776665555 55566666665543 55666777776
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
--.... ..+..--...+.-+...++-..+..+|+.....++.|+ ...|..++..-..-|++..+.++-+++
T Consensus 426 LGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 655543 23333444555666666666777777777666644333 356777777666777777776666665
Q ss_pred H
Q 041816 315 M 315 (396)
Q Consensus 315 ~ 315 (396)
.
T Consensus 499 ~ 499 (656)
T KOG1914|consen 499 F 499 (656)
T ss_pred H
Confidence 4
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0047 Score=51.77 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-HHH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-ITY---STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
+...+-.....+...|++++|.+.|+++... .|+. ... -.++.++.+.+++++|...+++..+..+ -.|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P-----~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-----THP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----CCC
Confidence 3333334455556678888888888888775 3443 222 3456777888888888888888887652 112
Q ss_pred CHhhHHHHHHHHhc--cC---------------C---HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 252 NTVTYTTIIDGLCK--EG---------------F---VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 252 ~~~~~~~li~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+ .-+...+.+.+. .+ | ..+|+..|+.+++. |-...-..+|...+
T Consensus 104 ~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl 167 (243)
T PRK10866 104 N-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRL 167 (243)
T ss_pred c-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHH
Confidence 2 233333333221 11 1 12333444444333 22223334444433
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR--GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 312 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+... .-..- -.+.+.|.+.|.+.-|..-++.+++. +.+........++.+|...|..++|.++...+..
T Consensus 168 ~~l~~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 168 VFLKDR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 333321 00111 24566788999999999999999876 3344567777888999999999999988876653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=42.69 Aligned_cols=29 Identities=38% Similarity=0.806 Sum_probs=14.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00043 Score=57.57 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=82.3
Q ss_pred HHHHhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 041816 70 LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149 (396)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 149 (396)
+.+..+.-|....+.+++++|++.|..+++..| .|.+.|..-..+|.+.|.++.|++-.+.....+ +--..+|..|.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG 156 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 344455556777788888888888888888665 478888888888888888888888888877743 12345788888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+|...|++++|++.|.+.++. .|+..+|-.=+
T Consensus 157 ~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 8888888888888888887765 55655554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00091 Score=52.99 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++....
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334444444444444444444444322111 1234444455555555555555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.4e-05 Score=51.87 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 191 SRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443211 1223333344555555555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00053 Score=51.96 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=63.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
....-.+...+...|++++|..+|+.+..... -+..-|..|.-++-..|++++|+..|.......+. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33344455556667777777777777766442 24455566666677777777777777777766643 66666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~ 206 (396)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00058 Score=54.32 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN----------------GKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..+++
T Consensus 67 HVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 67 HVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred hHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3333444444444445555555555555443321 123446677777777777777777777777
Q ss_pred HHHhcC
Q 041816 367 GFCLTG 372 (396)
Q Consensus 367 ~~~~~g 372 (396)
.+.+.+
T Consensus 147 iFG~~s 152 (228)
T PF06239_consen 147 IFGRKS 152 (228)
T ss_pred Hhcccc
Confidence 664444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.011 Score=49.60 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAF---TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR-- 224 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-- 224 (396)
..+.+.|++++|.+.|+.+...-+.. .... -.++.++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445566666666666665543222 1111 23445556666666666666666654221112222222222221
Q ss_pred c---------------CC---hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC
Q 041816 225 T---------------GH---TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286 (396)
Q Consensus 225 ~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 286 (396)
. .+ ..+|+..|+.+.+.. |+. .-..+|...+..+...
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------P~S-------------~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--------PNS-------------QYTTDATKRLVFLKDR---- 173 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--------cCC-------------hhHHHHHHHHHHHHHH----
Confidence 1 11 234556666666543 222 2344554444444322
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
=...--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225566688888888888888888864 333345566778888989999998888776654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=52.20 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
...+..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|+..++...... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4455556666666677777777777766542121 23466677777777777777777777776643 33344
Q ss_pred hHHHHHHHHh-------ccCCHHHHHHHHHH
Q 041816 255 TYTTIIDGLC-------KEGFVDKAKELFLQ 278 (396)
Q Consensus 255 ~~~~li~~~~-------~~g~~~~a~~~~~~ 278 (396)
++..+...+. ..|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4555555555 55666655444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00091 Score=59.62 Aligned_cols=93 Identities=10% Similarity=-0.086 Sum_probs=76.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
....+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 345566778999999999999887644 67788888888999999999999999988875 3467788888889999999
Q ss_pred hHHHHHHHHHHHhcC
Q 041816 228 TIVALNLFEEMANGN 242 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~ 242 (396)
+++|+..|++.....
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00092 Score=50.68 Aligned_cols=89 Identities=9% Similarity=-0.080 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|+..|......++. |+..+-.+..++
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 333444555555555555554443 333444444555555555555555555555444432 444555555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMM 315 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~ 315 (396)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0038 Score=52.11 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=40.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
+.+++.+|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+... +....+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 444555555555555544322 44444444555555555555555444444432 1223445555555555555555555
Q ss_pred HHHHHHh
Q 041816 234 LFEEMAN 240 (396)
Q Consensus 234 ~~~~~~~ 240 (396)
.|++..+
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5555444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00075 Score=60.13 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
...+...|++++|+..|+++.... +.+...|..+..+|.+.|++++|+..++........ +...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 345566777777887777777764 456667777777777778888888887777765433 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 041816 299 CYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~ 317 (396)
...|++++|...|++.++.
T Consensus 81 ~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 7778888888887777764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00075 Score=58.17 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=84.2
Q ss_pred hHHHHHHHHhcc-CCHHHHHHHHHHHhhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 041816 255 TYTTIIDGLCKE-GFVDKAKELFLQMKDK----NI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-----PDV 323 (396)
Q Consensus 255 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~ 323 (396)
.+..+...|... |++++|++.|++..+. +. .--..++..+...+.+.|++++|..+|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999887542 21 011345677888899999999999999998865322 222
Q ss_pred h-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 041816 324 V-TFNVIMDELCKNGKMDEASRLLELMILR--GVNPN--TSTFSTLMDGFCL--TGRVNHAKELFVSME 385 (396)
Q Consensus 324 ~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 385 (396)
. .|-..+-++...||...|.+.+++.... ++..+ ......|+.+|-. ...+++++.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 2333444677789999999999998864 23323 4566777887743 345666766666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0097 Score=51.97 Aligned_cols=264 Identities=14% Similarity=0.037 Sum_probs=170.3
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 041816 74 CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCF 152 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 152 (396)
....+..+.+..++..|+..+...++..+. ++..|..-+..+...+++++|+--.+.-.+.. |. .......-+++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd--~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD--NASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCH 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc--chhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhh
Confidence 344567778888899999999999998765 67788888888888899998887766554421 11 11233333334
Q ss_pred HhcCChhhHHHHHH---------------HHHhcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 153 CKMGRVSHGFVVLG---------------RILRSCF-TPDAVAFTSL-IKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 153 ~~~g~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
...++..+|.+.++ .+..... +|....+..+ ..++.-.|+.++|.+.--...+.. ..+....
T Consensus 128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al 206 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEAL 206 (486)
T ss_pred hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHH
Confidence 34444444443332 2211111 2333444444 345666799999988877777653 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh-------------HHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT-------------YTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
-.-..++...++.+.|...|++....+ |+... +..-.+-..+.|++..|.+.|.+.+..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--------pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--------PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--------hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 333344556889999999999988865 33321 222234456789999999999998764
Q ss_pred ---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 283 ---NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 283 ---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..++...|.....+..+.|+.++|+.--++..+.+ +. ...|..-..++...+++++|.+-++...+.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888889999999998888877632 21 123333445566678888888888877764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0031 Score=54.43 Aligned_cols=194 Identities=13% Similarity=0.156 Sum_probs=116.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhh
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~ 160 (396)
++++|..+|++. ...|...+++++|.+.|.+.... +-.. -...|.....+|.+ +++++
T Consensus 30 ~~e~Aa~~y~~A----------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~ 92 (282)
T PF14938_consen 30 DYEEAADLYEKA----------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDE 92 (282)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHH
T ss_pred CHHHHHHHHHHH----------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHH
Confidence 566666666654 44566778888888888776332 2111 12234455555544 48888
Q ss_pred HHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhcCCh
Q 041816 161 GFVVLGRILR----SCFTPD--AVAFTSLIKGLCAE-SRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRTGHT 228 (396)
Q Consensus 161 a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~ 228 (396)
|.+.+++... .| .++ ...+..+...|-.. |++++|++.|++..+. |.+. -...+..+...+.+.|++
T Consensus 93 Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 93 AIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 8888887764 23 222 44677788888888 9999999999987653 3111 134567788899999999
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhCCC--CC--ChhhHHHHHHHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDKNI--NP--DVVTYNSLIHGF 298 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p--~~~~~~~li~~~ 298 (396)
++|.++|++.......... ...+.. .+...+-++...||...|.+.|++.....+ .. .......|+.+|
T Consensus 172 ~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999998775411000 111222 233344466678999999999999876532 11 123445555555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0021 Score=59.92 Aligned_cols=143 Identities=10% Similarity=0.031 Sum_probs=100.9
Q ss_pred ccCCHhhHHHHHHHHhc--c---CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 041816 249 CKPNTVTYTTIIDGLCK--E---GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN--------DWNEANCLLIEMM 315 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~--~---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~ 315 (396)
.+.+...|...+.+... . ++...|..+|++..+.... ....|..+..++.... ++..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 36677888888887543 2 3477999999999987543 3445555444443221 2233444444433
Q ss_pred HC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 041816 316 DQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394 (396)
Q Consensus 316 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 394 (396)
.. ....+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 23345577888877777889999999999999986 5788999999999999999999999999988644 5544
Q ss_pred cC
Q 041816 395 SY 396 (396)
Q Consensus 395 ty 396 (396)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0031 Score=58.84 Aligned_cols=144 Identities=11% Similarity=-0.004 Sum_probs=100.6
Q ss_pred CCCccHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc--------CCHHHHH
Q 041816 207 GCKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE--------GFVDKAK 273 (396)
Q Consensus 207 g~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~ 273 (396)
+.+.+...|...+++..... +...|..+|++..+.. |.....|..+..++... ++...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 34667888888888755432 3668999999998875 33445555554444322 1233444
Q ss_pred HHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 274 ELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 274 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..+..... ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332 123355778887777777899999999999999865 78889999999999999999999999999874
Q ss_pred CCCCCHHHH
Q 041816 353 GVNPNTSTF 361 (396)
Q Consensus 353 g~~p~~~~~ 361 (396)
.|...+|
T Consensus 483 --~P~~pt~ 489 (517)
T PRK10153 483 --RPGENTL 489 (517)
T ss_pred --CCCCchH
Confidence 5544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=9.9e-05 Score=48.18 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=40.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 147 (396)
..|++++|+++|+.+....|. +...+..+..++.+.|++++|.++++++.... |+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 456777777777777776554 66666677777777777777777777776643 55444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0064 Score=49.81 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (396)
++..++.|++-.. .+-+.++.++.-.|.+.-..+++++..+...+.++.....|.+.-.+.|+.+.|...|+
T Consensus 165 ~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 165 EESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred hhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4666666665422 34567777888889999999999999988767788888889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 167 RILRSCFTPDAVAFTSL-----IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+..-..|...++.+ ...|.-.+++..|...+++....+ +.|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88765433444444433 344556788999999999888765 446767777666777789999999999999986
Q ss_pred C
Q 041816 242 N 242 (396)
Q Consensus 242 ~ 242 (396)
.
T Consensus 316 ~ 316 (366)
T KOG2796|consen 316 D 316 (366)
T ss_pred C
Confidence 4
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0021 Score=51.19 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------------CChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM----------------GRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
|..+-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33333334444445555555555555555444221 23456778888888888888888888888
Q ss_pred HHHHhcCC
Q 041816 185 KGLCAESR 192 (396)
Q Consensus 185 ~~~~~~g~ 192 (396)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 88766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0049 Score=45.03 Aligned_cols=56 Identities=25% Similarity=0.160 Sum_probs=28.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPN--VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444555555555555555543322 223334445555555555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.023 Score=44.19 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=67.8
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG---VQPDVVTF 326 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 326 (396)
.|++..-..|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666666666666666666665544334455555556666666666666666666655432 1222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 327 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
-.+.+.+...|+..+|+..|+..... -|+...-......+.++|+.+++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 34455566666666666666666653 344433333334455555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=51.46 Aligned_cols=257 Identities=14% Similarity=0.017 Sum_probs=156.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+.+..++.+|+..+....+.... +..-|..-...+.-.|+++++.--.+.-++.... ......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 45667888899999888876522 3445555566666677777776555544433211 111222222333333333333
Q ss_pred HHHHH---------------HHHhcC-CCccHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 197 AALFT---------------KLKAFG-CKPNVITYSTL-INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 197 ~~~~~---------------~~~~~g-~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
...++ ...... -+|...+|..+ ..++.-.|+.++|..+--...+.+ ..+....-.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~vr 209 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYVR 209 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHhc
Confidence 33332 111111 11333334333 345677899999988877777654 2222222222
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhH-------------HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTY-------------NSLIHGFCYANDWNEANCLLIEMMDQ---GVQPDV 323 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~ 323 (396)
..++--.++.+.|...|++.+..+ |+...- ..-..-..+.|.+..|.+.+.+.+.. ++.|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 234445788899999998887654 332221 11223346789999999999998853 456777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST---LMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..|.....+..+.|+.++|+.--++..+. |...... -..++...++|++|.+.|++..+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78888888899999999999998888763 4333333 3345566799999999999877643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.035 Score=45.64 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL-----IN 220 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-----l~ 220 (396)
+.++.++...|.+.-....+.++++...+.++.....|++.-...|+.+.|..+|++..+..-..|..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4555556666677777777777777665666777777777777777777777777766544223333333322 23
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.|.-.+++..|...+.++...+ +.|...-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556666666676666654 344444454444444456677777777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0084 Score=50.35 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhhHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM---GRVSHGFV 163 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~ 163 (396)
++..+.-++.-+..+| .|...|-.|..+|...|++..|..-|.+..+.. .++...+..+..++... ....++..
T Consensus 138 ~~~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4555555555555554 377777777777777777777777777776642 23555555555554332 23456677
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
+++++++.... |..+...|...+...|++.+|...|+.|.+..
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777776533 66666667777777777777777777777653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.027 Score=43.76 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=100.4
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD 287 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~ 287 (396)
-|++..--.|..++...|+..+|...|++....- +..|......+.++....+++..|...++.+.+.+.. -+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence 4566666678888889999999999998887654 5677888888888888889999999999888765321 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+.-.+.+.+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+..+.+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334556778888889999999999988875 46655555556677888887777655554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.028 Score=45.82 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~ 316 (396)
...|.+.|.+..|..-++.+++
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 3344445555555555544444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.013 Score=49.27 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG---HTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
|...|-.|...|...|+++.|..-|.+..+.. +.+...+..+..++.... ...++..+|+++...+ +.|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-------~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-------PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------Ccc
Confidence 55666666666666666666666666655542 234444444444443322 2345556666666554 445
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+...|...+...|++.+|...|+.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555666666666666666666554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00069 Score=44.10 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=23.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
.|++++|+++|+.+.+..+. +..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444322 4444444555555555555555555544443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.071 Score=46.56 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
.+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +-.+..|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345555677778899888888866653 36999999999999999999988876432 22458899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
.+.|...+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 9999999999888772 1 24567788889998888765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.012 Score=54.78 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHH----H--HHHHHhcCChh
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNI----L--INCFCKMGRVS 159 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~----l--i~~~~~~g~~~ 159 (396)
.++|.+..+. .|.+..|..+.......-.++.|...|-+.... |++.-...-.. + ...-.--|+++
T Consensus 679 ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 5666655543 278889999988888777888888877665432 22110000000 0 11112347888
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+|+++|-++-++. ..+..+.+.|++-.+.++++.--. +. .--..+|+.+...++....+++|.+.|..
T Consensus 752 eaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred Hhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887776542 346667777887777666643111 10 01134677777777777777777777665
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.... ...+.++.+..++++-..+-+.+.+ +....-.+.+++...|.-++|.+.+-+-
T Consensus 822 ~~~~---------------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~--- 878 (1189)
T KOG2041|consen 822 CGDT---------------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR--- 878 (1189)
T ss_pred ccch---------------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---
Confidence 3221 1234445555555554444443332 4445566666666677666666555332
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF--------------STLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~ 383 (396)
+ .| ...+..|...+++.+|.++-+...- |.+.+. .--|..+.+.|+.-+|-+++.+
T Consensus 879 s-~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 879 S-LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 1 11 1334555566666666555443321 111111 1123445566666666666666
Q ss_pred HHh
Q 041816 384 MES 386 (396)
Q Consensus 384 m~~ 386 (396)
|-+
T Consensus 949 mae 951 (1189)
T KOG2041|consen 949 MAE 951 (1189)
T ss_pred HhH
Confidence 654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.018 Score=42.07 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD----VVTFNVIMD 331 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 331 (396)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 345667778999999999999988876643 3456677788889999999999998887642 33 223333445
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
++...|+.++|.+.+-..... +...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677889999998888766542 3335555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.042 Score=44.77 Aligned_cols=170 Identities=19% Similarity=0.135 Sum_probs=90.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
....+...|++++|.+.|+.+..... +--..+.-.++.++.+.|+++.|...++.+....+. .| ...+...+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-----~~-~~~~A~Y~ 84 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-----SP-KADYALYM 84 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT------T-THHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----Cc-chhhHHHH
Confidence 34445566777777777777665421 112344455666777777777777777776665411 01 11111111
Q ss_pred HHHh-------------ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 041816 261 DGLC-------------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327 (396)
Q Consensus 261 ~~~~-------------~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 327 (396)
.+.+ ..+...+|...|+. ++.-|=...-..+|...+..+.+. .-. ---
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~---la~-~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR---LAE-HEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH---HHH-HHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH---HHH-HHH
Confidence 1111 11122333444433 444444445555555555554431 011 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 041816 328 VIMDELCKNGKMDEASRLLELMILRGVNP---NTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 328 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~ 378 (396)
.+...|.+.|.+..|..-++.+++. .+- .......++.+|.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3677899999999999999999986 222 2345677888999999888554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=56.54 Aligned_cols=133 Identities=9% Similarity=-0.031 Sum_probs=89.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHh----hCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMK----DKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMD----QGV-QPDV 323 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~ 323 (396)
..|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777888998887655432 22211 1345677788888889999999988876542 221 1223
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILR-----GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+.-+|...|.-..++++|+.++.+-..- ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34556777787778888888877654321 1233567888999999999999999888776554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0019 Score=56.19 Aligned_cols=271 Identities=13% Similarity=0.044 Sum_probs=163.6
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHH--HhC--CCC-CCHHhHHHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLT----SFNLLFGCLAKTKHYDTVLSLFKRL--NST--GLF-PDLYTYNIL 148 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-p~~~~~~~l 148 (396)
|..+++.|+....+.+|+..++.|.. |.. .|..|.++|.-.+++++|+++...= ..+ |-+ -...+-..|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 45567778999999999999998765 333 4777777888888999998875321 111 100 011222334
Q ss_pred HHHHHhcCChhhHHHHHHHH----HhcCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRI----LRSCFT-PDAVAFTSLIKGLCAESR--------------------IMEAAALFTKL 203 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~ 203 (396)
.+.+--.|.+++|+..-.+- .+.|-. .....+-.+...|...|+ ++.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 44444456666665432221 222211 123344445666654442 33444555432
Q ss_pred H----hcCCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 204 K----AFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 204 ~----~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
. +.|.. .-...|..|.+.|.-.|+++.|+...+.-......+|. -......+..+..++.-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 2 11210 11234566666777788999998776654332221111 122345778888999999999999999887
Q ss_pred Hhh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 279 MKD----KNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMD----Q-GVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 279 m~~----~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
-.. .|- .....+..+|...|.-..++++|+.++.+-.. . ...-....+-+|..+|...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 532 221 12455667788888888899999998876432 1 1122456788899999999999999988776
Q ss_pred HHh
Q 041816 349 MIL 351 (396)
Q Consensus 349 m~~ 351 (396)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.082 Score=46.14 Aligned_cols=290 Identities=15% Similarity=0.080 Sum_probs=185.3
Q ss_pred CCCccc--cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH----HH
Q 041816 78 GQGDIT--AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI----LI 149 (396)
Q Consensus 78 ~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----li 149 (396)
+.+++. +|+-..|.++-.+..+.-.. |..-.-.++. +-.-.|+++.|.+-|+.|.. |+.+-.. |.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llss--DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLy 161 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSS--DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLY 161 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHH
Confidence 344443 46667777776665432222 2222333333 33456999999999999986 3343333 33
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHH--HHHHHHHHH---
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVIT--YSTLINGLC--- 223 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~--~~~ll~~~~--- 223 (396)
-...+.|..+.|..+-+.....-.. -...+..++...+..|+++.|+++.+.-+... +.++..- -..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3345778999998888887765433 46788899999999999999999998766542 2333221 122222211
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhh-HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVT-YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
-..+...|...-.+..+ +.||.+- -..-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|
T Consensus 241 ldadp~~Ar~~A~~a~K--------L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~g 308 (531)
T COG3898 241 LDADPASARDDALEANK--------LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSG 308 (531)
T ss_pred hcCChHHHHHHHHHHhh--------cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCC
Confidence 12355666666666555 3455443 334457889999999999999999988655553 22 22334455
Q ss_pred CHHHHHHHHHHHHHC-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 041816 303 DWNEANCLLIEMMDQ-GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKE 379 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~ 379 (396)
+ .+..-+++..+. .++|| ......+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.++..
T Consensus 309 d--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 309 D--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred C--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHH
Confidence 4 444444444321 23454 45667778888889999998887777766 4788888888887664 4599999999
Q ss_pred HHHHHHhCCCCC
Q 041816 380 LFVSMESMGCKH 391 (396)
Q Consensus 380 ~~~~m~~~g~~p 391 (396)
++-+..+.--.|
T Consensus 385 wlAqav~APrdP 396 (531)
T COG3898 385 WLAQAVKAPRDP 396 (531)
T ss_pred HHHHHhcCCCCC
Confidence 988877643333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00096 Score=43.58 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC-CHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 281 (396)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 334445555555555555 45555555555443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.022 Score=52.75 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKH--YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 111 ~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
+..-.+|.+-.+ +-+.+.-+++++++|-.|+... +...++-.|++.+|-++|.+ .|.. |..+.+|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyT 669 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHH
Confidence 333344444333 2233344556667776677653 44556667777777777754 2322 22233444
Q ss_pred hcCCHHHHHHHHH------------HHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH------HHHhcCCCCccccc
Q 041816 189 AESRIMEAAALFT------------KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------EMANGNGKFGVVCK 250 (396)
Q Consensus 189 ~~g~~~~a~~~~~------------~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~~~~~~~~~~ 250 (396)
....+|.|.+++. +--+- ..++.--.+....+...|+.++|..+.- -+.+.+... -.
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl---d~ 744 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL---DK 744 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc---ch
Confidence 4444444433332 11100 0011111233445556666666655432 111111000 01
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
.+..+...+..-+-+...+..|-++|..|-+. ..+++.....++|.+|..+-+..-+
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 23334444444445556667777777766432 3456666777777777777665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=42.32 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
..+..+..++...|++++|..+|+++
T Consensus 32 ~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 32 EAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333333333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0016 Score=41.91 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
...+.+.|++++|.+.|+.+++.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666666666666652 33556666666666666777777666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=42.27 Aligned_cols=63 Identities=22% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG-HTIVALNLFEEMAN 240 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 240 (396)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4555666666666666666666666666653 335556666666666666 56666666666554
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=42.58 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-----RGVNPNTSTF 361 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 361 (396)
+...++..+...|++++|..+...+.... +.|...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666677777777777777777653 44666777777777777777777777776653 3677766553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.014 Score=49.48 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=63.7
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVI 329 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l 329 (396)
..|...+..+.+.|++++|...|+.+.+..+.-. ...+..+...|...|++++|...|..+.+.- -......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555666788888888888777643211 2466777777777888888888887777531 11123344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 041816 330 MDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
...+...|+.++|..+|+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666777888888887777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.016 Score=44.36 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHh-----hCCCCCCh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-----DKNINPDV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~ 288 (396)
+...++..+...|++++|..+.+.+.... |-+...|..+|.+|...|+..+|.++|+.+. +.|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34455556666677777777777766654 4566667777777777777777777766653 23555554
Q ss_pred hh
Q 041816 289 VT 290 (396)
Q Consensus 289 ~~ 290 (396)
.+
T Consensus 137 ~~ 138 (146)
T PF03704_consen 137 ET 138 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.15 Score=45.04 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK---EGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
.-.++-.|....+++..+++++.+....... +......-.....++.+ .|+.++|++++..+......+++.+|
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~---~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCD---VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccc---hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3455556888899999999999988752100 11122223344556666 89999999999997666666788899
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----HHHHHHH---H-HHHhCCC
Q 041816 292 NSLIHGFCY---------ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM----DEASRLL---E-LMILRGV 354 (396)
Q Consensus 292 ~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~---~-~m~~~g~ 354 (396)
..+.+.|-. ....++|...|.+.-+. .||...--.++..+...|.. .+..++- . .+.++|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888877632 22467788888776653 35554433333333333422 2233332 1 2223332
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 355 ---NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 355 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3456667788899999999999999999998763
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.018 Score=48.75 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCccHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--AVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLI 219 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll 219 (396)
.|...+..+.+.|++++|...|+.+++..+... ...+-.+...|...|++++|...|+.+.+.- -+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555445666888888888888887643321 3456677788888888888888888887642 111244555566
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 041816 220 NGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..+...|+.++|..+|+.+.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888888888888887764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.022 Score=53.17 Aligned_cols=206 Identities=13% Similarity=0.046 Sum_probs=125.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTP--------DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 209 (396)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+=+.+| -|++++|+++|-+|.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 478888888888777777777777776655431 2210 111111222222 37888888888777654
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 041816 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289 (396)
Q Consensus 210 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 289 (396)
| ..+..+.+.|++-.+.++++.-..... -.--...|+.+...+.....|++|.+.|..-...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~d-----D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDD-----DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 2 245667778888766666654221110 0112357888888888888888888887664321
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
...+.++.+..++++-+.+...+ +-|....-.+.+++.+.|.-++|.+.+-+-. .| ...+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHH
Confidence 23556666666666655554443 4456677788888889998888887764432 11 12345566
Q ss_pred hcCCHHHHHHHHHH
Q 041816 370 LTGRVNHAKELFVS 383 (396)
Q Consensus 370 ~~g~~~~A~~~~~~ 383 (396)
..++|.+|.++-++
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.18 Score=41.67 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+-|.+.|.+..|..-++++.+.... .+-....+-.|.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 456677778888787777777776421 1112234555666777777777777766555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0018 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..+++.+...|...|++++|+..|++..+.....+. -.|+ ..++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456788888888999999998888887654211111 1222 56778888888999999999998887653
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.033 Score=49.91 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
|.+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888888888888888888888877653 443 34778888888888888888888887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.027 Score=41.58 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---------CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGN---------GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD- 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 281 (396)
..++.+++.++++.|+.+....+++..-.-+ ...+....|+..+..+++.+|+..+++..|+++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455566666666666666665555443221 011122455666666666666666666666666666543
Q ss_pred CCCCCChhhHHHHHHHH
Q 041816 282 KNINPDVVTYNSLIHGF 298 (396)
Q Consensus 282 ~~~~p~~~~~~~li~~~ 298 (396)
.+++.+..+|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 34444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.03 Score=41.39 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
|..++..+|.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666777777777777777666655432 2211100 0000 0112345688888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCL 370 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 370 (396)
+|+..|++..|+++.+...+. +++.+...|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 888888999998888887764 677788888888876543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.088 Score=48.91 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
..++....-.||-+.+++.+.+..+.++..+.....-...|...+..++. ..+.+.|.++++.+...- |+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHH
Confidence 44566666789999999999988775543222111122344555544443 457889999999998863 455554
Q ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 292 NS-LIHGFCYANDWNEANCLLIEMMDQGV---QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 292 ~~-li~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.. -.+.+...|+.++|++.|++...... +.....+--+..++.-.+++++|.+.|..+.+. -..+...|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 43 34566788999999999998664211 122344556677788899999999999999985 24455566655544
Q ss_pred H-HhcCCH-------HHHHHHHHHHHh
Q 041816 368 F-CLTGRV-------NHAKELFVSMES 386 (396)
Q Consensus 368 ~-~~~g~~-------~~A~~~~~~m~~ 386 (396)
| ...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 567887 889999888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=44.70 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=44.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
+...|++++|..+|.-+.-.+. -+..-|..|..++-..+++++|+..|......+.. |...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3445566666666655544332 23333444445555555566666555555443321 333344455555555666666
Q ss_pred HHHHHHHHh
Q 041816 197 AALFTKLKA 205 (396)
Q Consensus 197 ~~~~~~~~~ 205 (396)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666655554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0052 Score=41.18 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 325 TFNVIMDELCKNGKMDEASRLLELMILR----GV-NPN-TSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 325 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554432 10 111 3445555556666666666666665543
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.26 Score=41.61 Aligned_cols=148 Identities=16% Similarity=0.024 Sum_probs=101.3
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
......|++.+|..+|.......+. +...--.++.+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4577888999999999999887765 45566778889999999999999999886543222222223345666666677
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
.+...+-.+.-.. +-|...-..+...+...|+.+.|...+-.+.+.. -.-|...-..++..+.-.|..+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 7666666665543 2266777778888888999999988776665542 12244556666766666664443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.1 Score=40.01 Aligned_cols=88 Identities=11% Similarity=-0.115 Sum_probs=55.8
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
-+...|++++|..+|.-+...+ +-+..-|..|..++-..+++++|+..|......+.. |+..+-....++..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence 3455677777777777766654 344555666666666677777777777665544432 55555556666667
Q ss_pred cCCHHHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMD 316 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~ 316 (396)
.|+.+.|...|...++
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 7777777777766665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=38.51 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|.+.+++++|.++++++...+ +.+...|.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555543 224444555555555555555555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.41 Score=42.44 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFG---CKPNVITYSTLINGLCR---TGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
..++-.|....+++..+++.+.+.... +.....+-....-++.+ .|+.++|++++..+.... ..++..
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------~~~~~d 218 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------ENPDPD 218 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc------CCCChH
Confidence 344445666666676676666666541 11122222233444455 667777777776644333 255666
Q ss_pred hHHHHHHHHhc---------cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-HH---HHHHHH---HH-HHHC
Q 041816 255 TYTTIIDGLCK---------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-WN---EANCLL---IE-MMDQ 317 (396)
Q Consensus 255 ~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~---~a~~~~---~~-~~~~ 317 (396)
+|..+...|-. ....++|+..|.+.-+.. |+...--.++..+.-.|. .+ +..++- .. +.+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 66666655432 223677888887765542 443332222222333332 11 222222 22 2233
Q ss_pred CCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 318 GVQ---PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 318 ~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
|.. .|--.+..++.++.-.|+.++|.+..+.|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 322 23334577888999999999999999999976
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.012 Score=38.78 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
..|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666777777776666653 234455556666666667777777766666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.41 Score=41.91 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
+.+..+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++-.. + -++.-|..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----------v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyep 242 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----------VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEP 242 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHH
Confidence 34555677788899988888877763 47889999999999999999988776432 1 25688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
++.+|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999999999888762 2256678899999999998765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.048 Score=49.92 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=102.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 164 (396)
++++++.++.+.-.-. +. -+....+.++..+.+.|..+.|+++...- . .-.....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll-~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLL-PN-IPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTG-GG---HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhc-cc-CChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHH
Confidence 4566655555411111 11 12455888899999999999999875432 1 234455688999998876
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 041816 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 244 (396)
.++. .+...|..|.....+.|+++.|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....+
T Consensus 341 a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 6542 3778999999999999999999999988653 5677778889999988888888877765
Q ss_pred CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 245 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
-++....++.-.|+.++..+++.+-
T Consensus 404 ----------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ----------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2555566666678888888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.1 Score=44.64 Aligned_cols=155 Identities=13% Similarity=-0.020 Sum_probs=113.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~ 157 (396)
+.-.|++.+|-..++++++..| .|..+++..=.++.-.|+.+.-...++++... +++...+.-....-++.+.|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3456788999999999998655 58888998889999999999999999988653 222223333445556678999
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
+++|++.-++..+.+ +-|...-.++...+-..|++.++.++..+-... +.-.-..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999998876 347888888888999999999999988765432 1001112233334456677999999999
Q ss_pred HHHH
Q 041816 235 FEEM 238 (396)
Q Consensus 235 ~~~~ 238 (396)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 9763
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.059 Score=39.24 Aligned_cols=92 Identities=10% Similarity=-0.034 Sum_probs=69.4
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhc
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY---TYNILINCFCKM 155 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~ 155 (396)
..+..+|+++.|++.|.+.+..-|. ....||.-..++.-+|+.++|++-+++..+..-..... .|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4456778999999999999886554 77889999999999999999999999887642111222 233334456778
Q ss_pred CChhhHHHHHHHHHhcC
Q 041816 156 GRVSHGFVVLGRILRSC 172 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~ 172 (396)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888888887776
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.029 Score=46.61 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
+-++.++++|...|+.||..+-..|+.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3455666666666666666666666666655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.72 Score=41.38 Aligned_cols=129 Identities=14% Similarity=0.261 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-NVIMD 331 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~ 331 (396)
.+|...+..-.+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+..-|.++|+--+.. -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888899999999998887 5678888899988765 57888888888875553 3454444 45566
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 332 ELCKNGKMDEASRLLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 332 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+...++-..|..+|+..+.+ +..+ ...|..+|+--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888888999999866654 3333 56788888877788888777766666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.14 Score=47.02 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=97.3
Q ss_pred HHHhcCChhHHHHHHHHHH-hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 116 CLAKTKHYDTVLSLFKRLN-STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
...-.++++++.++.+.-. -..+ +....+.++..+.+.|..+.|+++..+-. .-.....+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3445678888777765211 1111 24446778888888888888887654321 2345566788888
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
.|.++.++. .+...|..|.....+.|+++.|.+.|++.. -|..|+-.|.-.|+.+.-.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------------CccccHHHHHHhCCHHHHHH
Confidence 888766443 366788888888889999988888888743 35667777777888877777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
+.+.....| -++....++...|+.++..+++.+
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766554 255556666667777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.18 Score=45.39 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV----ITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788888888999999999999999888876 4663 35888888999999999999999888774
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.54 Score=38.53 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHH
Q 041816 190 ESRIMEAAALFTKLKAF---GCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDG 262 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~---g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~ 262 (396)
.-++++|+++|.+.... + ..+ ...+..+-..+.+...+++|-..+.+-......+. ..++ ...|...|-.
T Consensus 123 nv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~--~y~~~~k~~va~ilv 199 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD--AYNSQCKAYVAAILV 199 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh--hcccHHHHHHHHHHH
Confidence 34566666666654321 1 111 22234444556666666655444433221110000 0111 1335555666
Q ss_pred HhccCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKD---KNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
|.-..++..|.+.++.--. ..-.-+..+...|+.+| ..|+.+++.+++
T Consensus 200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 6666777788877777322 11122556677777766 456666665544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.12 Score=45.47 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=51.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRS-----CFT---------PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
+.+.+.|++..|..-|++.+.. +.+ .-..+++.+.-+|.+.+++..|++.-++..+.+ +.|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3556777777777777665432 111 112344555555566666666666666655554 3455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
-.-..++...|+++.|+..|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55555666666666666666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.42 Score=44.73 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHH-----HHHHHHHhcCChhhHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYN-----ILINCFCKMGRVSHGF 162 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~a~ 162 (396)
+-+.-++++.+.+.. |+.. .+...++-.|++.+|.++|.+- |...- ...|+ -...-+...|..++-.
T Consensus 618 ~li~EL~~~k~rge~-P~~i---LlA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 618 ELISELEERKKRGET-PNDL---LLADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHHHHHHhcCCC-chHH---HHHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 444456667676665 4432 3556677789999999998753 32211 11111 1223344445544444
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhcCC---CccHHHHHHHHHHHHhcCChHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK------LKAFGC---KPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
.+.++-.+. ..+..--.+...++...|+.++|..+.-+ +.+.+- ..+..+...+..-+.+...+..|-+
T Consensus 691 mL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 691 MLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 443332211 01111112344555666777776654321 222221 2244555566666677888889999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+|.+|-.. ..++......++|++|..+-+...+.
T Consensus 769 IF~k~gD~---------------ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 769 IFLKMGDL---------------KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred HHHHhccH---------------HHHhhheeecccchHhHhhhhhCccc
Confidence 99987543 35677788899999999998877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.57 Score=42.41 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKT---------KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+.|+.+|.+.+.... .|.....|..+..++... ....+|.++-++..+.+ .-|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 5678899999983222 223455666666555432 24457778888888776 347888888888778888
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
+++.|..+|++....++. ...+|-...-...-.|+.++|.+.+++..+... ..........+..|+..+ .+.|.++|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 899999999999987633 455555555566678999999999999776531 112333444455666544 67777776
Q ss_pred HHH
Q 041816 236 EEM 238 (396)
Q Consensus 236 ~~~ 238 (396)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.33 Score=35.60 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
......+......|.-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++.++|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555566666666666666666542 245566666666667777777777666666666654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.61 Score=38.20 Aligned_cols=187 Identities=19% Similarity=0.081 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
...+...+...............+......+...+.+..+...+...... ........+......+...+++..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444443322112344555555666666666666666665431 12233444555555555556666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 166 GRILRSCFTPDAVAFTSLIK-GLCAESRIMEAAALFTKLKAFGC--KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.......
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 6665543222 111112222 45555666666666665543211 0122222233333444555555555555555432
Q ss_pred CCCcccccC-CHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 243 GKFGVVCKP-NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 243 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+. ....+..+...+...++++.|...+.....
T Consensus 198 -------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 198 -------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred -------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 22 233444444444444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.99 Score=40.53 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
+|-.++....+..-++.|..+|-++.+.| +.+++.++++++..++ .|+..-|.++|+--.... +.+..--+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-------~d~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-------PDSTLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-------CCchHHHH
Confidence 44455555556666777777777777776 5566666777776554 456667777777655542 22233334
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
-.+..+...++-+.|..+|+....+ +..+ ...|..+|..-..-|++..+..+-+.|.+. .|...+.......|
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 4455556667777777777754332 1112 346777777667777777766666666552 34444443444333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.08 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 041816 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 342 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 373 (396)
+++++++|...|+.||..+-..|+.++.+.|-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 56777777777777777777777777765554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.21 Score=36.47 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=38.2
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhcCChH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTLINGLCRTGHTI 229 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~ 229 (396)
+..|+++.|++.|.+.+..-+ -....||.-..++.-.|+.++|+.=+++..+..-..+. ..|.--...|...|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 344444445444444444321 13444444444444445555544444444433111111 11222223344455555
Q ss_pred HHHHHHHHHHhcC
Q 041816 230 VALNLFEEMANGN 242 (396)
Q Consensus 230 ~a~~~~~~~~~~~ 242 (396)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.15 Score=44.77 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAF-----GCKP---------NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~-----g~~~---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 248 (396)
-...|.+.|++..|..-|++.... +.++ -..++..+.-+|.+.+++.+|++..++....+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------ 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------
Confidence 345678899999999998886543 1110 11234444445555555555555555555443
Q ss_pred ccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
++|+...---..++...|+++.|+..|+.+++.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 344444444444555555555555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.36 Score=43.86 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-VITYSTLING 221 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~ 221 (396)
+-..+..++.+.|+.++|++.+.+|.+.... .+..+...|+.++...+.+.++..++.+..+...+.+ ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3345677778899999999999999876433 2455777899999999999999999999876543322 3456654433
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.5 Score=36.52 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH-HHHHH--
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV-AFTSL-- 183 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l-- 183 (396)
..|..-+. +++.+..++|+.-|..+.+.|..--+. ..-.......+.|+...|...|+++-.....|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 33443333 345566677777777776655331111 11122233456677777777777766543333222 11111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.-.+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|..+|+.+....
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12345567777777776666655544444555566666677777777777777766543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.86 Score=38.61 Aligned_cols=142 Identities=16% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
.....|++.+|..+|+...+.... +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455667777888877777766433 4555666777778888888888887776543211112222223344444444444
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~ 302 (396)
...+-...... +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444332 346666667777777777777777766665543 222 4444455555554444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.46 Score=34.88 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
.-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+. .|.. ..|
T Consensus 13 ildG~V~qGveii~k~v~Ss---------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~ 70 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---------NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCG 70 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S
T ss_pred HHhchHHHHHHHHHHHcCcC---------CccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhc
Confidence 34577777788888776643 3444444444333334444455555554332 2222 223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 382 (396)
+.......+..+ ..+.......++.+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.++++
T Consensus 71 NlKrVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 71 NLKRVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -THHHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333322221 123445566778889999999999999998764 47788999999999999999999999999
Q ss_pred HHHhCCCC
Q 041816 383 SMESMGCK 390 (396)
Q Consensus 383 ~m~~~g~~ 390 (396)
+.-+.|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 99999864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.79 Score=37.53 Aligned_cols=225 Identities=20% Similarity=0.110 Sum_probs=121.3
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAA 198 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (396)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555555555555543311 12455566666666777777777776666542 223345555566666666667777777
Q ss_pred HHHHHHhcCCCccHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLIN-GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
.+.........+ ......... .+...|+.+.|...+++....... .......+......+...++.+.+...+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 777666543222 122222223 566777777777777776442200 00122333333444555666777777766
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 278 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.............+..+...+...++++.+...+....... |+ ...+..+...+...+..+++...+......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66654222124555666666666666666666666666532 22 233333333344555566666666666553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.59 Score=35.34 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
++..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33344434444444444444443331 233334444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.2 Score=38.40 Aligned_cols=163 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 041816 213 ITYSTLINGLCRTGHTI---VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 289 (396)
.+...++.+|...+..+ +|.++++.+.... +....++..-+..+.+.++.+++.+++..|...-.. ...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~ 156 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SES 156 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccc
Confidence 45667788888877655 5666666775553 333566667777777789999999999999875221 334
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHh-hHH-HHH---HHHHhcCC------HHHHHHHHHHHHhC-CC
Q 041816 290 TYNSLIHGF---CYANDWNEANCLLIEMMDQGVQPDVV-TFN-VIM---DELCKNGK------MDEASRLLELMILR-GV 354 (396)
Q Consensus 290 ~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~l~---~~~~~~g~------~~~A~~~~~~m~~~-g~ 354 (396)
.+..++..+ .. .....|...+..+....+.|... ... .++ ......++ ++....+++...+. +.
T Consensus 157 ~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~ 235 (278)
T PF08631_consen 157 NFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK 235 (278)
T ss_pred hHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 455544444 33 33456667776666544455443 111 111 11222222 44445555533332 23
Q ss_pred CCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHH
Q 041816 355 NPNTSTFSTL-------MDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 355 ~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m 384 (396)
+.+..+-.++ ...+.+.+++++|.++|+--
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3344443333 23456789999999999854
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.71 E-value=1 Score=41.92 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCccccc
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNV------ITYSTLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
..++....=.||-+.+++.+.+..+.+--..+ -.|..++..++. ..+.+.|.++++.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------- 263 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------- 263 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--------
Confidence 44555556678999999988887664311121 234444444443 456788999999999874
Q ss_pred CCHhhHHHH-HHHHhccCCHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 251 PNTVTYTTI-IDGLCKEGFVDKAKELFLQMKDKN---INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 251 ~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
|+...|... .+.+...|++++|++.|+...... .+.....+.-+.-.+.-..+|++|...|..+.+.. ..+..+|
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y 342 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFY 342 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHH
Confidence 666666544 456778899999999999765311 11234455666677788999999999999999753 3344445
Q ss_pred HHHHH-HHHhcCCH-------HHHHHHHHHHHh
Q 041816 327 NVIMD-ELCKNGKM-------DEASRLLELMIL 351 (396)
Q Consensus 327 ~~l~~-~~~~~g~~-------~~A~~~~~~m~~ 351 (396)
.-+.. ++...|+. ++|.++|.+...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44433 33456777 888888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.3 Score=38.44 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 340 DEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 340 ~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
.++.++++.+.+.|+++....|..+.-
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHHH
Confidence 345555666666666655555554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.67 Score=35.04 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=75.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...+.+..++.+++.+...++ .+...++.++..|++.+ ..+.++.++. ..+......+++.|.+.+.+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence 3445778888899998888764 57778888999988764 3344444442 1234445567777888888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAE-SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+.-++.++.. ... .+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 88 ~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 88 AVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8777766532 122 23333333 6777777777651 255567777666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.3 Score=40.82 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=67.3
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH--YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
.++.-+.+..|+++..++-..-. .....|......+.+..+ -+++++.+++=..... .+...|..+.+-....|+
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGR 522 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCc
Confidence 35556678889999888743211 123455566666665532 2334444433222222 344567777777778899
Q ss_pred hhhHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 158 VSHGFVVLGRILRSCFT----PDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 88888777642222111 1122234445555666776666666655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.47 Score=39.63 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQP-DVVTFNVIM 330 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~ 330 (396)
.|+.-+.. .+.|++..|...|...++.... -....+..|...+...|++++|..+|..+.+.- -.| -...+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46665554 3556688888888887765322 123456677788888888888888887777541 111 134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 041816 331 DELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887775
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.5 Score=40.63 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=105.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH----HHHHHH
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN----SLIHGF 298 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~ 298 (396)
...|+..+|-..++++.+.. |.|...+..-=.+|.-.|+.+.-...++++... -.+|...|. .+.-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhH
Confidence 45688888888899988874 778888888888899999998888888888654 123433332 233344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHH
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
...|-+++|++.-++..+.+ +-|.-.-.++...+.-.|++.++.++..+-... +--.-..-|....-.+...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 68899999999888887654 334445566677777788999998887665432 11111223344444556678899
Q ss_pred HHHHHHHHHH
Q 041816 376 HAKELFVSME 385 (396)
Q Consensus 376 ~A~~~~~~m~ 385 (396)
.|+++|+.=+
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 9999887643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=37.05 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=33.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 294 LIHGFCYANDWNEANCLLIEMMDQGVQPD---VVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 294 li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+.+.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566777777777777777664 1111 22344555666667766666666555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1 Score=36.30 Aligned_cols=192 Identities=16% Similarity=0.026 Sum_probs=108.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
.-|-+.|-..-|.--|.+.+...| .-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~ 149 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRY 149 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCch
Confidence 334455556666666777766555 4677899999999999999999999999988653322222333333 3356889
Q ss_pred hhHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
.-|.+-+-...+.... |-...|--+.. ..-++.+|..- .++..+. |..-|...|-.|.- |++. ...+++
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~ 220 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLME 220 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHH
Confidence 9998877777765432 33333433332 23456666543 3444432 43444433333222 2111 122333
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+..........-..-+.||-.|..-+...|+.++|..+|+-....
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3333220000000112356677777778888888888888777654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.68 Score=34.76 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
.....+.|++++|.+.|+.+..+-. +-....-..++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344566888888888888876521 112344556777788888888888888888877654444455555555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.36 Score=40.28 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=37.9
Q ss_pred hcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-CccHHHHHHHHHHHHhcCChH
Q 041816 154 KMGRVSHGFVVLGRILRSCFT--PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-C-KPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~-~~~~~~~~~ll~~~~~~g~~~ 229 (396)
+.|++..|...|...++..+. -....+--|..++...|++++|..+|..+.+.- - +.-+..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334455555555555543211 011222234455555555555555554444431 0 011233444444444555555
Q ss_pred HHHHHHHHHHhc
Q 041816 230 VALNLFEEMANG 241 (396)
Q Consensus 230 ~a~~~~~~~~~~ 241 (396)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=3.1 Score=39.87 Aligned_cols=275 Identities=12% Similarity=0.052 Sum_probs=157.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNS-------TGLFPDLYTYNILINCFC 153 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~li~~~~ 153 (396)
....|++.++...+.+.. ..-..+..+ +....+.+.|+.+++.+.+ .| +.....-+..+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcch----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 467899999988876643 222222222 3356789999999999876 44 3345566777777
Q ss_pred hcC-----ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH----
Q 041816 154 KMG-----RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA-ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC---- 223 (396)
Q Consensus 154 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---- 223 (396)
+.. +.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|.. . .+-.+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG 375 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence 643 566799999998888743 44443333332222 24678999999999988832 2 2223333332
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH----H
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF----C 299 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~ 299 (396)
-..+.+.|..++++..+.+ .|...--...+..+.. +.++.+.-.+..+.+.|.. ...+-...+..- .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-------~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~ 446 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-------NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDL 446 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-------ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccc
Confidence 2347889999999998876 2222222233334444 7777777777777666544 222222222111 0
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 041816 300 Y----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN----GKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-- 369 (396)
Q Consensus 300 ~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-- 369 (396)
. ..+.+.+...+......| +......+-+.|..- .+++.|...+......+ ......+...+-
T Consensus 447 ~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g 519 (552)
T KOG1550|consen 447 FSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHG 519 (552)
T ss_pred cccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcC
Confidence 1 124556666666666544 334444444444332 34677777777666654 222222222221
Q ss_pred --hcCCHHHHHHHHHHHHhCC
Q 041816 370 --LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 --~~g~~~~A~~~~~~m~~~g 388 (396)
... +..|.+++++..+.+
T Consensus 520 ~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 520 EGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cCcch-hHHHHHHHHHHHhcC
Confidence 123 677778877766543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.88 Score=39.65 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=24.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLS 128 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 128 (396)
..+....+.++|+..|.+.+..-.. -....++..+..+.++.|.+++++.
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455556666666666655442111 0122344555555555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.4 Score=38.32 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHH--HHh
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLI----HGFC---YANDWNEANCLLIEMMDQGVQPDVV----TFNVIMDE--LCK 335 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~--~~~ 335 (396)
-++|+++++.+.+-..- |..+-|.+. .+|. ....+.+-.++-+-+.+.|+.|-.. .-|.|.++ +..
T Consensus 396 dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 66677777766653211 333333322 1221 1223444444444455667766433 34444443 456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.|++.++.-.-.-+.+ +.|++.+|..+.-.+....++++|.+++.++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7888888766555555 7899999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.2 Score=37.72 Aligned_cols=251 Identities=11% Similarity=0.087 Sum_probs=161.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTS--FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+.-.-.|+.++|.+-|+.|... |.... ...|.-...+.|+.+.|.+.-+..-..- +.-.-.+...+...+..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcC
Confidence 3344578999999999999752 22221 1222222346789999999888876542 223456788999999999
Q ss_pred ChhhHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChH
Q 041816 157 RVSHGFVVLGRILRSC-FTPDAV--AFTSLIKGLC---AESRIMEAAALFTKLKAFGCKPNVI-TYSTLINGLCRTGHTI 229 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~ 229 (396)
+++.|+++++.-.+.. +.++.. .-..|+.+-. -..+...|...-.+..+. .||.. .-..-..++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchh
Confidence 9999999999876543 233322 1122222211 123455566555555443 44432 2233457889999999
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHH----HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK----ELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~----~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++-.+++.+-+.. |....+... .+.+.|+..... +-+..|+.. +......+..+-...|++.
T Consensus 281 Kg~~ilE~aWK~e--------PHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~ 346 (531)
T COG3898 281 KGSKILETAWKAE--------PHPDIALLY--VRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFS 346 (531)
T ss_pred hhhhHHHHHHhcC--------CChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchH
Confidence 9999999998875 444333322 334555532211 112233322 5667777888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCK-NGKMDEASRLLELMILR 352 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~ 352 (396)
.|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88887777665 36888888888887654 59999999999988875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.6 Score=38.16 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=125.7
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHh
Q 041816 117 LAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS--CFT---PDAVAFTSLIKGLCA 189 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 189 (396)
+....+.++|+..+.+-..+- ..--..+|..+..+.++.|.+++++..--.-++. ... .-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888887765431 1112346677777888888877765432221110 001 113344555555555
Q ss_pred cCCHHHHHHHHHHHHhc-CCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 190 ESRIMEAAALFTKLKAF-GCKP---NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.-++.+++.+-..-... |..+ .-...-.+..++...+.++++++.|+...+.....+. ......+|..|.+.|.+
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHH
Confidence 55555555555443332 2222 1223345566666677777888887777665422111 01123567777777777
Q ss_pred cCCHHHHHHHHHHHhh----CCCCCChh-hH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HhhHHHHH
Q 041816 266 EGFVDKAKELFLQMKD----KNINPDVV-TY-----NSLIHGFCYANDWNEANCLLIEMMD----QGVQPD-VVTFNVIM 330 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~----~~~~p~~~-~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~ 330 (396)
..|+++|.-...+..+ .++. |.. -| ..|.-++...|....|.+.-++..+ .|-.+. ......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7788777766655432 2222 211 12 2233445566777777777666553 232221 23345566
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~ 350 (396)
+.|...|+.+.|..-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 67777777777776666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.59 Score=37.02 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ccH----HH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK---PNV----IT 214 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~---~~~----~~ 214 (396)
.+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|+...-.+++..+...+.+....-.. .+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455555666666666666666655542222 2334455555666666666666665554432111 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
|..+ .+...+++..|-+.|-+....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcC
Confidence 1111 233456777777777665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.96 Score=41.25 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP-NTSTFSTLMDGF 368 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~ 368 (396)
..+..++-+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+..+...+. -...|+..+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 44566667889999999999988864311 234466788888999999999998888875432222 234455544333
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.3 Score=36.63 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred hcCChhHHHHHHHHHHhCC--CCCCHH------hHHHHHHHHHhcC-ChhhHHHHHHHHHhc--------CCCCC-----
Q 041816 119 KTKHYDTVLSLFKRLNSTG--LFPDLY------TYNILINCFCKMG-RVSHGFVVLGRILRS--------CFTPD----- 176 (396)
Q Consensus 119 ~~~~~~~a~~~~~~~~~~~--~~p~~~------~~~~li~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 176 (396)
+.|+++.|..++.+..... ..|+.. .|+.-.. ..+.+ +++.|..++++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666654322 122211 1222222 23334 666666555554332 11222
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 177 AVAFTSLIKGLCAESRIM---EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+.+.+|...- .-..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-------~~~e 155 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-------DHSE 155 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-------cccc
Confidence 345667777777776644 5566666665542 2234555566677777888889999998888763 2233
Q ss_pred hhHHHHHHHH---hccCCHHHHHHHHHHHhhCCCCCChh-hHHHH-HH---HHHhcCC------HHHHHHHHHHHHHC-C
Q 041816 254 VTYTTIIDGL---CKEGFVDKAKELFLQMKDKNINPDVV-TYNSL-IH---GFCYAND------WNEANCLLIEMMDQ-G 318 (396)
Q Consensus 254 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l-i~---~~~~~~~------~~~a~~~~~~~~~~-~ 318 (396)
..+..++..+ .. .....|...++.+....+.|... ....+ +. ...+.++ .+....++..+.+. +
T Consensus 156 ~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 156 SNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG 234 (278)
T ss_pred chHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence 4455555544 33 23456666666665544444443 11111 11 1112111 34444445533322 2
Q ss_pred CCCCHhhHH---HHH----HHHHhcCCHHHHHHHHHHHH
Q 041816 319 VQPDVVTFN---VIM----DELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 319 ~~p~~~~~~---~l~----~~~~~~g~~~~A~~~~~~m~ 350 (396)
.+.+..+-. +++ ..+.+.+++++|.+.|+-..
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233333322 222 23456789999999988554
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.47 Score=35.61 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=55.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPP-PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+..|++++|++.|+.+...-|..+ ...+--.++.++.+.+++++|+..+++..+....-...-|...+.+++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3456889999999999998877643 345666789999999999999999999988653322234555555555433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.1 Score=34.35 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 136 (396)
+.+++..+++-+.-..|..+...++... .+...|+|.+|+.+|+++.+.
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 5666666666666655554444444333 345566677777777666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.15 Score=29.53 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
+|..+...|...|++++|.++|+++.+.. +.|...+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 46667777888888888888888877764 45555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.14 Score=29.69 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLK 204 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~ 204 (396)
..|.+.|++++|+++|++..
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.5 Score=37.59 Aligned_cols=163 Identities=10% Similarity=0.071 Sum_probs=93.5
Q ss_pred hhH--HHHHHHHHhc-----CChhHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 041816 108 TSF--NLLFGCLAKT-----KHYDTVLSLFKRLNST-GLFPD-LYTYNILINCFCK---------MGRVSHGFVVLGRIL 169 (396)
Q Consensus 108 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 169 (396)
..| ...+.+.... ...+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554442 2345677788887721 13343 3344443333221 123445666677777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
+.+.. |......+..+..-.++++.|...|++....+ +-...+|........-.|+.++|.+.+++..+... .
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP-----~ 404 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP-----R 404 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-----h
Confidence 76633 77777777777777777888888888887764 22355566666666778888888888888666431 1
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
..-....-..+..|+..+ .+.|+++|-+
T Consensus 405 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 112223333344555443 4555555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=2.2 Score=35.16 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
|.-...+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445555555666555554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.49 Score=40.11 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNINP 286 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p 286 (396)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 3456777888888888888888888888875 66788888888888888888888888888754 57777
Q ss_pred ChhhHHHHHHH
Q 041816 287 DVVTYNSLIHG 297 (396)
Q Consensus 287 ~~~~~~~li~~ 297 (396)
...+.......
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 76666555554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.68 Score=39.31 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCccHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-----FGCKPNVITYST 217 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~ 217 (396)
.++..++..+...|+++.+.+.++++....+ -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3556677788888889999999998888763 4788899999999999999999998888765 477887777666
Q ss_pred HHHH
Q 041816 218 LING 221 (396)
Q Consensus 218 ll~~ 221 (396)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.07 Score=28.95 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 041816 94 FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVL 127 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 127 (396)
|++.++..| .++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP--NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555544 48888888888888888888875
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.5 Score=34.80 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--VITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.++......+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888889999999999999999887744433 445677788888888888888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.2 Score=33.26 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 128 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
+.++.+.+.++.|+...+..+++.+.+.|++.. +..+++.++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 444455556667777777777777777776543 3334444444444444333322221 222222222222221
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
=...+..++..+...|++-+|+++.+...... ......++++..+.+|...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----------~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----------SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----------cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00124556666667777777777766643221 22224455555555555544444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.8 Score=40.82 Aligned_cols=210 Identities=12% Similarity=0.110 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF----TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
...-+..+.+...++.|+.+-+. .+. +.... .....-+.+.|++++|...|-+.... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 44566677777777777766543 222 33333 33444556789999999888776653 222 23566
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
-|....+...-..+++.+.+.+ -.+...-+.|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRK 475 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHH
Confidence 6777777788888888888887 4566677889999999999998877776654 3322 1124566777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
.+-.++|..+-..... +......+ +-..|++++|.+.++.+--.. -..+.......+. ...+++...+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e---~l~~l~kyGk~Ll-~h~P~~t~~i 543 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISE---LLRTLNKYGKILL-EHDPEETMKI 543 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH---HHHHHHHHHHHHH-hhChHHHHHH
Confidence 7777887766655433 23333333 456788999999988763111 1122222222222 3456777776
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
+-+....
T Consensus 544 li~~~t~ 550 (933)
T KOG2114|consen 544 LIELITE 550 (933)
T ss_pred HHHHHhh
Confidence 6665543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.1 Score=41.82 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.-+.++..+.++|-.++|+++- +|..- -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3455556666666666665442 22221 1223345677777776655432 5667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++..|.+.|.+... |..|+-.+...|+.+....+-....+.+ .. |....+|...|+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~-----N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-------KN-----NLAFLAYFLSGD 736 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-------cc-----chHHHHHHHcCC
Confidence 88888888888776654 4456666777777766666666655554 12 233345556688
Q ss_pred HHHHHHHHHHH
Q 041816 269 VDKAKELFLQM 279 (396)
Q Consensus 269 ~~~a~~~~~~m 279 (396)
++++.+++..-
T Consensus 737 ~~~C~~lLi~t 747 (794)
T KOG0276|consen 737 YEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhc
Confidence 88887776553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.9 Score=35.46 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCR--TG----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+++...+++.|.+.|...+..+|-+..-.... .. ....|..+|+.|.+...-. ..++-..+..++.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--cc
Confidence 44566778888888887777665543332222 22 2346888999998876322 23455566666554 33
Q ss_pred CC----HHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 267 GF----VDKAKELFLQMKDKNINPDV--VTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 267 g~----~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
++ .+.+..+|+.+.+.|+..+. .....++..+..... ..++..+++.+.+.|+++....|..+.-
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 33 35667777777776665432 333344433322222 4478888899999998888777765543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.65 E-value=2.3 Score=32.16 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=36.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 137 (396)
.++++++..+++.+.-..|..+...++-..+ +...|+|++|+++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 5667888888888877777655555555443 567788888888888887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.45 E-value=2.9 Score=32.51 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=93.3
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHH-
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV-TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVI- 329 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l- 329 (396)
...|..-+. ..+.+..++|+.-|..+.+.|..--+. .-........+.|+-..|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 444544444 356688999999999999886552111 11223344578899999999999998764444332 11111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 330 -MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 330 -~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
...+...|.++......+-+...+-+--...-..|.-+-.+.|++..|..+|..+....-.|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22456789999988888877765544455556777778889999999999999987644444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.19 Score=27.57 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRL 133 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~ 133 (396)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.24 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777778888888888777744
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.17 E-value=11 Score=38.48 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhcC--ChhHHHHHHHHHHh
Q 041816 108 TSFNLLFGCLAKTK--HYDTVLSLFKRLNS 135 (396)
Q Consensus 108 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 135 (396)
.....+|..|.+.+ ..++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34455677777766 66677766666654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.13 E-value=7.1 Score=36.03 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=124.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.+-+-...-+++..+.++..++-+..+..+|...| -+-..|..++.+|... .-+.-..+++++.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 33566677788999999999999999999999876 5778899999999988 567778899998887654 5555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKP-----NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
|...|-+ ++...+..+|.+....-++. -...|.-+...- ..+.+..+.+..++....+ ...-.+.+.
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~q 209 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQ 209 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHH
Confidence 5555555 88888888888776543221 122444444321 3456677777777665442 223345566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 297 (396)
-+-.-|....++++|++++..+.+.+-+ |...-..++.-
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 6667788889999999999987765433 44444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.98 E-value=12 Score=38.29 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=63.3
Q ss_pred cCCHhhHHHHHHHH----hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-
Q 041816 250 KPNTVTYTTIIDGL----CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV- 324 (396)
Q Consensus 250 ~~~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 324 (396)
.|+...+.....+| ...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34544444333333 334555555555544322 123455666677777777766655421 1222
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 325 -TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 325 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
+-..|+.-+...+++-+|-++..+.... . ...+..|++...|++|.++-..-
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD----P----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC----H----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 2256677777888888888887777643 1 22344556666777777665443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.66 E-value=7.1 Score=34.80 Aligned_cols=66 Identities=14% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
....+|..++..+.+.|.++.|...+..+...+... .+.....-....-..|+..+|...+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777788888888888888888776643221 233444445555667777888887777776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=10 Score=36.38 Aligned_cols=178 Identities=14% Similarity=0.039 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHhc
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKG-----LCAESRIMEAAALFTKLKA-------FGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~g~~~~~~~~~~ll~~~~~~ 225 (396)
...+.++++...+.| +......+..+ +....+.+.|+.+|+.+.+ .| ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777777765 22222222222 3355678888888887766 44 223455566666664
Q ss_pred C-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 226 G-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 226 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
. +.+.|+.++.+....+ .|+.......+..... ..+...|.++|......|.. ..+-.+...|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHH
Confidence 3 5566888888887776 4454444433333333 34677888888888877743 22222222221
Q ss_pred ----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 300 ----YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353 (396)
Q Consensus 300 ----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 353 (396)
...+.+.|..++++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2346778888888887776 3322222222333333 66666666665555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.44 E-value=12 Score=36.82 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=118.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH----HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI----NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
...-+..+.+...++-|+.+-+. .+ .|..+...+. .-+.+.|++++|...|-+-+.. ++| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 45567777888888888877554 33 2444334443 4456789999999888776643 232 23566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
-|....++.+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|. . ..-....+..+.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~ 475 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRK 475 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHH
Confidence 677777888888999999999864 66666889999999999999888777655 221 1 1123455666667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+-.++|..+-..... .......++ -..+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7777777666544432 333344443 4578899999998765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.4 Score=36.36 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred ccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK---NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 249 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
.+....+...++..-.....++.++..+-++... ...|+... ..+++.+ -.-+.++++.++..=+..|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3455666666777667778888888888777643 12222211 2233332 34467799999888888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 326 FNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 326 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++.+++.+.+.+++.+|.++.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888777654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=5.8 Score=32.20 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+.+||.|.--+...|+++.|.+.|+...+.... ...+...-.-++.-.|+++.|.+-+.+.-+.+. -.|-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~-----~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP-----NDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCC-----CChHHHHH
Confidence 556666666666677777777777766665322 111221122223345666666666655555441 12222333
Q ss_pred HHHHHHHhccCCHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HhhHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELF-LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-------VVTFNV 328 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-------~~~~~~ 328 (396)
..+++ +.-++.+|..-+ ++.... |..-|...|-.|. .|+.. ...+++++... -.-+ ..||--
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKAD-ATDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHH
Confidence 33332 223444444332 222222 3334433333322 12111 11222332221 1111 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+.+-+...|+.++|..+|+-.+..
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 777777888888888888877654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.48 E-value=5.5 Score=31.03 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+++..+.+.+++|+...+..+++.+.+.|++....++ ...++-+|.......+-.+. +....+.++--.|..+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 3444555566666777777777777777765544433 33343444433332221111 22233333333333221
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
...+..+++.+...|++-+|.++.+..... +......++.+-.+.++..--..+++
T Consensus 89 ----------~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 89 ----------GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ----------hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 113445555666666666666666554322 22222344444444444443333333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.40 E-value=2.2 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.24 Score=26.84 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=20.1
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAK 273 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~ 273 (396)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 667888888888888888888875
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.22 E-value=7.8 Score=33.04 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
+|+.+|+.....+..-.|..+-..+++.... ..-+-|.+..+. ...+-.++..+...++..+++.+++..-.+
T Consensus 146 ~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~--~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 146 EALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLV--STFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHH--hccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCccHHHHHHHHHHHHhcC
Q 041816 164 VLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTK-----LKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
+++..... ++..|...|..+|+.....|+..-..++.++ +++.|+..+...-..+-..+.+.|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.99 E-value=7.8 Score=31.88 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
..-+..+++.+|+++|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3335567777777777777655433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.64 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=5.9 Score=36.17 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=75.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
.+|+.-.|-+-....++..+..|+. ...........|+++.+.+.+...... +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455555543333333333332333 223334456678888888887665432 2345566778888888888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
.+-+-|+...++ +..+........-..|-+|++.-.|+++....
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888876665 44444444444445577888888888876654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.6 Score=30.39 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 311 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
++.+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.47 E-value=3.6 Score=32.98 Aligned_cols=73 Identities=11% Similarity=-0.004 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
+.|.+.|-.+...+.--+......|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444444444444444444 34556666666555542 22556666666666666666666653
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=5.9 Score=34.09 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+++++.++..=+..|+-||..+++.+|+.+.+.+++.+|.++.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555554444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.82 E-value=1 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777766543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=17 Score=33.72 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
|.....+++..+..+-.+.-++.+..+|...| -+...|..++++|... ..+.-..+|+++.+.. -.|++.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-------fnDvv~ 134 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-------FNDVVI 134 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-------chhHHH
Confidence 44445556666666666666666666666654 2555566666666666 4555566666665543 223333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhhHHHH
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNIN-----PDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVI 329 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l 329 (396)
-..|...|.+ ++...+...|..+..+-++ .-...|..++.. -..+.+..+.+...+.. .|..--...+.-+
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 3344444443 5556666666655433211 011233333321 12344555555554443 2333334445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 330 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
-.-|....++++|++++..+.+.. .-|...-..++.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 555666666666666666555542 224444344443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.70 E-value=2.5 Score=36.66 Aligned_cols=95 Identities=11% Similarity=-0.044 Sum_probs=70.3
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
+.-|+.|++.|.+++|++.+...+...+ .+++++..-..+|.+..+|..|..-.+.....+ ..-...|..-+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 4567889999999999999999877654 488888888899999999998888777766532 1122345555555556
Q ss_pred cCChhhHHHHHHHHHhcC
Q 041816 155 MGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~ 172 (396)
.|...+|.+-++..++..
T Consensus 178 Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALE 195 (536)
T ss_pred HhhHHHHHHhHHHHHhhC
Confidence 677778877777777653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.4 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777888888888888888888888763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.98 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLN 134 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 134 (396)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345666666666666666666666654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.22 E-value=16 Score=32.60 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP---DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
...+|..+...+.+.|.++.|...+..+...+... +....-.-++.....|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666777777766666666532111 223333344555556666666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.13 E-value=7.8 Score=31.13 Aligned_cols=73 Identities=8% Similarity=-0.103 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555544434444444444444 45666666666665543 22456666777777777777766653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.8 Score=32.76 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=40.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPP---LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
|+.++..|++++|..-|..++..-+..+. ...|..-..++.+.+.++.|++-..+..+.+.. .......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 44455555555555555555544332111 112333334444555555555555444443310 11112222334444
Q ss_pred cCChhhHHHHHHHHHhc
Q 041816 155 MGRVSHGFVVLGRILRS 171 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~ 171 (396)
...+++|++-|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 45555555555555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.92 E-value=3.9 Score=28.31 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555555666666666777777777777777777766555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.1 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
.|..+..++...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.25 E-value=7.9 Score=31.02 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..++.+.+.++.|+.-..+..+.+ +........-..+|.+...+++|++-|+.+.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~-------pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELN-------PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcC-------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344445555555555444444433 111222222233455555555555555555544
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.04 E-value=7.8 Score=32.77 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--- 189 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 189 (396)
=|.+++..++|.+++...-+--+..-+........-|-.|.+.+++..+.++-..-++..-..+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 37788888999888876655433222223344455555688888888888888877764333344446666666554
Q ss_pred --cCCHHHHHHHH
Q 041816 190 --ESRIMEAAALF 200 (396)
Q Consensus 190 --~g~~~~a~~~~ 200 (396)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888888777
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.94 E-value=2.1 Score=37.12 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=60.8
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
+-|.+.|.+++|+..|..-...... +.+++..-..+|.+...+..|+.=....+..+ ..-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 4688999999999999887765322 88888888889999888887777666665432 111223333333344445566
Q ss_pred HHHHHHHHHHhCCCCCC
Q 041816 341 EASRLLELMILRGVNPN 357 (396)
Q Consensus 341 ~A~~~~~~m~~~g~~p~ 357 (396)
+|.+=++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66665555555 4555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.9 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 359 STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
..|..+...+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777888888888888888887763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.56 E-value=0.2 Score=38.10 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
.++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666677777777778888877665555677778888888887776777766651 12233345667777777
Q ss_pred CHHHHHHHHHHHHh
Q 041816 338 KMDEASRLLELMIL 351 (396)
Q Consensus 338 ~~~~A~~~~~~m~~ 351 (396)
.+++|.-++.++-.
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 77777777766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.53 E-value=15 Score=35.69 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc--
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAE-- 190 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 190 (396)
...+.-.|+|+.|++.+-+. .+...|...+...+.-| |-+......-..++.... .|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 44566679999999988762 22234555444444433 322222221133332211 11225577788888764
Q ss_pred -CCHHHHHHHHHHHHhcC
Q 041816 191 -SRIMEAAALFTKLKAFG 207 (396)
Q Consensus 191 -g~~~~a~~~~~~~~~~g 207 (396)
.+..+|.++|--+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 67889999988776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.52 E-value=11 Score=29.00 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=25.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH-HHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY-TTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+.++.+++..++..+.-.. |..... ..-...+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666655532 222211 22223345556666666666665544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=19 Score=31.10 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=136.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----SHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
++.......+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666766665 3344444445432 4666666777777777764 3566666666433 3455555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 181 TSLIKGLCAESRI-----MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 181 ~~l~~~~~~~g~~-----~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+... ++..+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---------~~~~V 175 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---------PNGDV 175 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---------CCHHH
Confidence 5566666554321 223333333332 2355566667777777776 4566666666553 34445
Q ss_pred HHHHHHHHhccC-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 041816 256 YTTIIDGLCKEG-FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334 (396)
Q Consensus 256 ~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 334 (396)
-...+.++.+.+ +...+...+..+... ++..+-...+.++.+.++ ..|...+-+..+.+ + .....+.++.
T Consensus 176 R~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg 246 (280)
T PRK09687 176 RNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHH
Confidence 555555555543 234566666555532 466677777788888877 45655555555543 2 2346777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
..|+. +|...+..+.+. .||..+-...+.++.
T Consensus 247 ~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88875 677777777764 346666655555553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.14 E-value=24 Score=32.29 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH-------HHHHH--
Q 041816 122 HYDTVLSLFKRLNSTGLF----PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL-------IKGLC-- 188 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~-- 188 (396)
+.+++..+.+.+....+. -=..+|..++....+.++..+|.+.+.-+.... |+...-..+ -+..+
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcc
Confidence 555666665555433211 124567888888889999999998888776543 333322221 12222
Q ss_pred --hcCCHHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH---
Q 041816 189 --AESRIMEAAALFTKLKAFGCKPNVITY--STLINGLCRTGH-TIVALNLFEEMANGNGKFGVVCKPNTVTYTTII--- 260 (396)
Q Consensus 189 --~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li--- 260 (396)
..-+...-+.+|+.....++....-+. -.-..-+.+.|. -++|+++++.+.+-. +-|...-|.+.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-------~yD~ec~n~v~~fv 424 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-------NYDIECENIVFLFV 424 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-------cccHHHHHHHHHHH
Confidence 111233445566666655433221111 112233555665 789999999988743 34444333322
Q ss_pred -HHHhc---cCCHHHHHHHHHHHhhCCCCCChhh----HHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 261 -DGLCK---EGFVDKAKELFLQMKDKNINPDVVT----YNSLIHG--FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 261 -~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.+|.+ ...+..-..+-+-+.+.|+.|-.+. -|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.
T Consensus 425 Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlG 502 (549)
T PF07079_consen 425 KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLG 502 (549)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHH
Confidence 23332 2344455555555667777764333 3444333 3567899988776655555 689999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
-+.....++++|..++..+ +|+..++++=+
T Consensus 503 l~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 9999999999999998865 77888777643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=86.32 E-value=13 Score=31.61 Aligned_cols=90 Identities=11% Similarity=-0.035 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh-
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR- 224 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~- 224 (396)
..-|.++++.+++.+++...-+..+.--+....+...-|-.|.+.+++..+.++-..-....-..+...|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 4458899999999999887766655433334566777788899999999999888776654222334457777666655
Q ss_pred ----cCChHHHHHHH
Q 041816 225 ----TGHTIVALNLF 235 (396)
Q Consensus 225 ----~g~~~~a~~~~ 235 (396)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 79999999887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.19 E-value=39 Score=33.77 Aligned_cols=223 Identities=13% Similarity=0.097 Sum_probs=123.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDA-------VAFTSLIK-GLCAESRIMEAAALFTKLKAF----GCKPNVITYSTLI 219 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~ll 219 (396)
.....++.+|..++.++...-..|+. ..++.+-. .....|++++|.++-+..... -.......+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999999888764333322 13333322 233468899999888876654 1223456677778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh---HHHH--HHHHhccCC--HHHHHHHHHHHhhC-----CC-CC
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT---YTTI--IDGLCKEGF--VDKAKELFLQMKDK-----NI-NP 286 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~l--i~~~~~~g~--~~~a~~~~~~m~~~-----~~-~p 286 (396)
.+..-.|+++.|..+..+..+... .-++.. |..+ ...+...|+ +.+....|...... .. .+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~------~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMAR------QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHH------HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 888889999999999888776541 223332 3333 223455663 23333333333221 10 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----
Q 041816 287 DVVTYNSLIHGFCYANDWNEANCL----LIEMMDQGVQPDVVT--FNVIMDELCKNGKMDEASRLLELMILRGVNP---- 356 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---- 356 (396)
-..++..+..++.+ .+.+..- +.--......|-... +..|+......|+.++|...++++......+
T Consensus 579 ~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~ 655 (894)
T COG2909 579 LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHV 655 (894)
T ss_pred HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 22344445555544 2322222 221112211222222 2367788888999999999999888653332
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 041816 357 NTSTFSTLMDG--FCLTGRVNHAKELFVS 383 (396)
Q Consensus 357 ~~~~~~~li~~--~~~~g~~~~A~~~~~~ 383 (396)
+...-...+.. ....|+..++.....+
T Consensus 656 ~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 656 DYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 33333333332 2457888887777665
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.33 Score=36.87 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
....+.++..|++.+..+...++++.. +..-...++..|.+.|.++++..++.
T Consensus 42 ~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 42 PDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchHHHHHHHHH
Confidence 444555555555555545554444411 11222344444555555555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.75 E-value=2.9 Score=22.14 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 360 TFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566667777778888888888877665
|
... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.55 E-value=1.9 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.17 E-value=9 Score=31.20 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=57.6
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHH
Q 041816 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDE 332 (396)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 332 (396)
|.+.-++.+.+.+...+++...++-++.... |..+-..+++.+|-.|+|++|..-++-.-... ..+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677788889999999999888776544 77778889999999999999998887766532 23345567766654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.80 E-value=41 Score=32.88 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=156.4
Q ss_pred cCCCCccccCChhHHHHHHHHHHh--------cCCCCCCHhh-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLN--------MRPSPPPLTS-----FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 142 (396)
+.|.++.+..++++-..+.+.+.- .|+. -+..- -..+++-+...+.+..|+++-..+...-.. +.
T Consensus 394 sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIp-lT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~ 471 (829)
T KOG2280|consen 394 SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIP-LTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GD 471 (829)
T ss_pred hhcccccccCChHHHHHHHHHHHHHhhhcccccCcc-ccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-cc
Confidence 456777788888877766655432 1211 23222 234566677889999999998877532111 25
Q ss_pred HhHHHHHHHHHhcCCh--hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ccHHHHH
Q 041816 143 YTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK----PNVITYS 216 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~ 216 (396)
..|..+..-+.+..+. +++.+.+++=++... .....|..+.+-...+|+++.|..+++.=...+.. .+...+.
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~ 550 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSS 550 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHH
Confidence 6677777777766432 223333333232222 34556777777777889999998887642211100 0111223
Q ss_pred HHHHHHHhcCChHHHHHH--------------------------HHHHHhcCCC-Cc---------------ccc-----
Q 041816 217 TLINGLCRTGHTIVALNL--------------------------FEEMANGNGK-FG---------------VVC----- 249 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~--------------------------~~~~~~~~~~-~~---------------~~~----- 249 (396)
..+.-....|+.+....+ |.+..+.... .. ..+
T Consensus 551 ~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~ 630 (829)
T KOG2280|consen 551 LALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYA 630 (829)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhh
Confidence 333444444554444333 3333221100 00 000
Q ss_pred ----cCCHhhHHHHHHHHhccCCHHH-HHHHHHHHh----------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 250 ----KPNTVTYTTIIDGLCKEGFVDK-AKELFLQMK----------DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 250 ----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----------~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
.+-.........++.+.....- +..+=+++. +.|......+.+--+.-+...|+-.+|.++-.+.
T Consensus 631 ~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F 710 (829)
T KOG2280|consen 631 AETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF 710 (829)
T ss_pred hhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc
Confidence 0000011112222222222111 111111111 1122223344555555666667777776666554
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
. -||-..|-.-+.+++..+++++-+++-+.+. .+.-|...+.+|.+.|+.+||.+++.+..
T Consensus 711 k----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 711 K----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 3 4777788778888888888887776655543 24556678888889999999988877653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.58 E-value=12 Score=26.36 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++..+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444444555555555556666666666666666666555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.6 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 041816 362 STLMDGFCLTGRVNHAKELFV 382 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~ 382 (396)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666665554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.49 E-value=2.7 Score=24.29 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 329 IMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.08 E-value=35 Score=31.49 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=82.0
Q ss_pred hcCCHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 189 AESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 189 ~~g~~~~a-~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
..|++-.| .++++-+....-.|+.....+ ..+...|+++.+...+...... +.....+..+++....+.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-------~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-------IGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-------hcCCchHHHHHHHhhhchh
Confidence 34665554 445566665543455444333 3466789999998888777654 3455677888889899999
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
++++|..+-+.|....+. ++..........-..|-++++.-.|+++...+
T Consensus 372 r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999888877665 44444444334456677889999998887643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.06 E-value=17 Score=27.71 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=37.9
Q ss_pred hccCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 264 CKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
...++.+++..+++.|.-..+. +...++...+ +...|+|.+|..+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3478899999999988764332 2333444443 567899999999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.98 E-value=16 Score=34.54 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=67.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 195 (396)
...+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3455678888877765542 556688888888888888888888776543 3455666666777766
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
...+-....+.|. .|. +| -+|...|+++++.+++.+-.
T Consensus 711 l~~la~~~~~~g~-~N~-AF----~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-NNL-AF----LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhhcc-cch-HH----HHHHHcCCHHHHHHHHHhcC
Confidence 6666666666652 232 22 24566788888877776653
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.93 E-value=16 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
+++|...|++.... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34444555555444 45666666555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.3 Score=21.90 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNS 135 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 135 (396)
+|..+...+.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666666667777777777766654
|
... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.51 E-value=31 Score=29.64 Aligned_cols=183 Identities=19% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh------cC-----ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCR------TG-----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~------~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.++-.+..++..+.-......+|...+.++.. .| -..+|+++|--+....+ -.++-.-++.
T Consensus 103 ~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkg--------k~v~~~~~ie 174 (361)
T COG3947 103 PEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKG--------KEVTSWEAIE 174 (361)
T ss_pred HHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcC--------CcccHhHHHH
Confidence 33444444444433223344556666655552 11 23578888888776542 2344555666
Q ss_pred HHhccCCHHHHHHHHHHHh-------h-------------------CCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHH
Q 041816 262 GLCKEGFVDKAKELFLQMK-------D-------------------KNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEM 314 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~-------~-------------------~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~ 314 (396)
++-...+..+|...+.... . .++..|..-|...+...... -.++++.++....
T Consensus 175 ~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~y 254 (361)
T COG3947 175 ALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQY 254 (361)
T ss_pred HHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHh
Confidence 6666666666665554321 1 12334555555555544322 2355555555544
Q ss_pred HHCCCCC--------C---------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 315 MDQGVQP--------D---------VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 315 ~~~~~~p--------~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 377 (396)
... .-| | ..+++.....|..+|.+.+|.++.+..... -+.+...+-.++..+...|+--.|
T Consensus 255 kgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 255 KGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred cCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhh
Confidence 321 111 1 123455667889999999999999999876 355788889999999999998888
Q ss_pred HHHHHHHH
Q 041816 378 KELFVSME 385 (396)
Q Consensus 378 ~~~~~~m~ 385 (396)
.+-++++.
T Consensus 333 ~khyerya 340 (361)
T COG3947 333 IKHYERYA 340 (361)
T ss_pred hhHHHHHH
Confidence 77777664
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.30 E-value=2.6 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=26.0
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPP-LTSFNLLFGCLAKTKHYDTVLSL 129 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 129 (396)
..++.++|+..|+..++....+++ ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655444222 12455556666666666665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=29 Score=31.86 Aligned_cols=209 Identities=17% Similarity=0.131 Sum_probs=97.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV--AFTSLIKGLCAESR 192 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 192 (396)
.++.|+.+-+ +.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3455776544 44445676665432 234455556667754 445555666555432 12234555667788
Q ss_pred HHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 193 IMEAAALFTKLKAFGCKPNVI---TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.+.+..+++ .|...+.. .-...+...+..|+.+-+..+ .+.|... ..++....+ .+...+..|+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~L----l~~gad~---~~~~~~g~t-pLh~A~~~~~~ 148 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLL----IARGADP---DIPNTDKFS-PLHLAVMMGDI 148 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHH----HhCCCCC---CCCCCCCCC-HHHHHHHcCCH
Confidence 776655554 33221111 112334444556665444333 3334110 011222222 33444556776
Q ss_pred HHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH---HHHHHHHHhcCCHHHHH
Q 041816 270 DKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF---NVIMDELCKNGKMDEAS 343 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~ 343 (396)
+.+..+++ .|..+ |..-.+.+.. .+..|+.+ +.+.+.+.|..++...- ..++...+..|+.+
T Consensus 149 ~~v~~Ll~----~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~--- 216 (413)
T PHA02875 149 KGIELLID----HKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID--- 216 (413)
T ss_pred HHHHHHHh----cCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH---
Confidence 65444443 33332 2223333333 34455544 44445566666654321 23444344556553
Q ss_pred HHHHHHHhCCCCCCH
Q 041816 344 RLLELMILRGVNPNT 358 (396)
Q Consensus 344 ~~~~~m~~~g~~p~~ 358 (396)
+.+.+.+.|..++.
T Consensus 217 -iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 -IVRLFIKRGADCNI 230 (413)
T ss_pred -HHHHHHHCCcCcch
Confidence 44555666776664
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.94 E-value=12 Score=27.43 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
..+-++.....++.|+......-+++|.+.+|+..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344444445556666666666666666666666666666665544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.83 E-value=36 Score=30.04 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=93.8
Q ss_pred cCCHhhHHHHHHHHhcc------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 250 KPNTVTYTTIIDGLCKE------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
|-|+.+|-.++..--.. .-.+.-+.++++..+.+. -+...+..++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56777887777543222 124556677888777754 37777888899999999999999999999976
Q ss_pred CCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhC------CC----CCC----H---HHHHHHHHHHHhcCCHHHH
Q 041816 318 GVQPDVVTFNVIMDELCK---NGKMDEASRLLELMILR------GV----NPN----T---STFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~------g~----~p~----~---~~~~~li~~~~~~g~~~~A 377 (396)
. +-+...|...++.... .-.++....+|.+..+. +. .+. . .++..+...+...|..+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 2256777777776554 23566666666655432 11 111 1 2233333344678999999
Q ss_pred HHHHHHHHhCCC-CCCc
Q 041816 378 KELFVSMESMGC-KHTV 393 (396)
Q Consensus 378 ~~~~~~m~~~g~-~p~~ 393 (396)
..+|+-+.+.++ .|+.
T Consensus 174 va~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 174 VALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHHHcCCccc
Confidence 999999998776 4543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.80 E-value=3.1 Score=21.70 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 362 STLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 362 ~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566777788888888888888763
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.46 E-value=62 Score=32.45 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=109.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNV-------ITYSTLI-NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
...++++|..++.++...-..|+. ..|+.+- ......|++++|.++.+.....-.. ....+....+..+.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~--~~~~~r~~~~sv~~ 504 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE--AAYRSRIVALSVLG 504 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc--ccchhhhhhhhhhh
Confidence 457899999998887654222221 2333332 2344578889999888877654210 00234566777888
Q ss_pred HHHhccCCHHHHHHHHHHHhhCCCCCChhhH---HHHH--HHHHhcCC--HHHHHHHHHHHHHC--CCC----CCHhhHH
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTY---NSLI--HGFCYAND--WNEANCLLIEMMDQ--GVQ----PDVVTFN 327 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~li--~~~~~~~~--~~~a~~~~~~~~~~--~~~----p~~~~~~ 327 (396)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+ +.+....+...... .-+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988876553222233332 2222 23445563 33333333333321 011 1233455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 041816 328 VIMDELCKN-GKMDEASRLLELMILRGVNPNTSTF--STLMDGFCLTGRVNHAKELFVSMESMGCKH 391 (396)
Q Consensus 328 ~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 391 (396)
.++.++.+. +...++..-++--......|-...+ ..|+......|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 555555552 1222222223222222222222222 256778888999999999999988754443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=35 Score=29.44 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=47.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----c
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----T 225 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~ 225 (396)
..+++..+...+......+ +......+...|.. ..+..+|..+|...-+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4466777777777766543 22334444444433 245667777777666655 23334445555554 3
Q ss_pred CChHHHHHHHHHHHhcC
Q 041816 226 GHTIVALNLFEEMANGN 242 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~ 242 (396)
.+..+|..++++..+.+
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 36667777777777666
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.88 E-value=31 Score=28.67 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=83.1
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-HHHHHHHHH
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFC 153 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~ 153 (396)
+.-|..+....++++|+..+.+.+...|. .+..|..-+.++.+.++++.+..--.+.++. .||..- ...+..+..
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLL 89 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHH
Confidence 34567777888899999988888876553 4567778888899999999888887777763 466553 334555667
Q ss_pred hcCChhhHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILR----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
....+++|+..+.+... ..+.+-..+...|..+--+.=...+..++.++
T Consensus 90 ~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred hhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77889999988887743 33444555566665554333334444444433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.83 E-value=36 Score=29.38 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=101.1
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
......+++..|...+......+ +......+...+.. ..+..+|.++|..+.+.|. ......|...|..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~ 121 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYAN 121 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhc
Confidence 34456677888888888886633 22344444444443 3468889999998877763 3333445555544
Q ss_pred ----cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 155 ----MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-------RIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 155 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
..+..+|..+|....+.|..+.......+...|.... +...|...|.+.-..+ +......+...|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~ 198 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYE 198 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 3488999999999999885543333445555554431 2347889999888876 4445555555554
Q ss_pred h----cCChHHHHHHHHHHHhcC
Q 041816 224 R----TGHTIVALNLFEEMANGN 242 (396)
Q Consensus 224 ~----~g~~~~a~~~~~~~~~~~ 242 (396)
. ..+.++|..+|+...+.+
T Consensus 199 ~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 199 KGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 347889999999998877
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.67 E-value=35 Score=29.16 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=71.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHHhcCChhhHHHHHHHHHh----cCCCCCHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-------YNILINCFCKMGRVSHGFVVLGRILR----SCFTPDAVAFT 181 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-------~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 181 (396)
+.+...+.+++++|+..+.++...|+..|..+ ...+...|...|+...--+......+ ..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34445566778888888888887776655443 34566677777776554444332221 11122344555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 182 SLIKGLCAE-SRIMEAAALFTKLKAFGCKPN-----VITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 182 ~l~~~~~~~-g~~~~a~~~~~~~~~~g~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
+|+..+-.. ..++..+.+.....+....-+ ...-.-++..+.+.|.+.+|+.+...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566555433 345666665555544321111 112235678889999999998766544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.18 E-value=29 Score=27.84 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-----NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 369 (396)
...+...|++++|..-++..... |....+ -.|.+.....|.+|+|+..++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 45667888888888888877753 222223 3345566778888888888887765432 2333445567788
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 041816 370 LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g 388 (396)
..|+-++|..-|++....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8889899988888888765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 396 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 5e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 3e-17
Identities = 18/151 (11%), Positives = 46/151 (30%), Gaps = 4/151 (2%)
Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFL---QMKDKNINPDVVTYNSLIHGFCYANDWNE 306
+ A L + + K + YN+++ G+ + E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA-SRLLELMILRGVNPNTSTFSTLM 365
+L + D G+ PD++++ + + + + R LE M G+ + L+
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
+ ++ + +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.1 bits (193), Expect = 6e-16
Identities = 31/293 (10%), Positives = 76/293 (25%), Gaps = 23/293 (7%)
Query: 30 HTRKPKSSISKNEPSDPTTTAKLKESL------------RLTVKDRASLEQFLKERCKSS 77
H + + + P + + L RL K + + +
Sbjct: 4 HHHHHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRR 63
Query: 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
Q + ++ A C+ D SP LL D + + +
Sbjct: 64 LQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEA-PGKLSLDVEQAPSGQHSQAQ 122
Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVL---GRILRSCFTPDAVAFTSLIKGLCAESRIM 194
L C ++ +L + + +++ G +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNT 253
E + +K G P++++Y+ + + R E+M+ K
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG------LKLQA 236
Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
+ ++ + + ++ P V + L+ +
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 6e-09
Identities = 53/367 (14%), Positives = 103/367 (28%), Gaps = 131/367 (35%)
Query: 66 LEQFLKE-RCKSSGQGDI-----TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
+ F+ CK D+ + ++ E D+++ S ++ LF L
Sbjct: 26 EDAFVDNFDCK-----DVQDMPKSILSKEE----IDHIIM---SKDAVSGTLRLFWTL-L 72
Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DA 177
+K + V ++ L + Y L++ I P
Sbjct: 73 SKQEEMV----QKFVEEVLRIN---YKFLMS----------------PIKTEQRQPSMMT 109
Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI---TYSTLINGLCR-TGHTIVALN 233
+ L ++++ F K NV Y L L V +
Sbjct: 110 RMYIEQRDRLYNDNQV------FAKY-------NVSRLQPYLKLRQALLELRPAKNVLI- 155
Query: 234 LFEEMANGNGK----------FGVVCK-PNTVTYTTIIDGLCK--EGFVDKAKELFLQMK 280
+ + G+GK + V CK + + + C E ++ ++L Q+
Sbjct: 156 --DGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQI- 209
Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEA-----------NCLLIEMMDQGVQPDVVTFNVI 329
D N +++ + NCLL+ + +V
Sbjct: 210 DPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLV--LL-----NVQNAKAW 259
Query: 330 --MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG------RVNHAKELF 381
+ CK IL + T+ F + D L+ ++H
Sbjct: 260 NAFNLSCK--------------IL--L---TTRFKQVTDF--LSAATTTHISLDHHSMTL 298
Query: 382 VSMESMG 388
E
Sbjct: 299 TPDEVKS 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.56 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.42 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.41 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.24 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.19 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.19 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.1 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.09 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.05 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.0 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.98 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.96 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.82 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.79 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.78 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.77 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.76 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.68 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.67 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.65 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.62 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.5 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.37 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.25 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.06 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.99 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.77 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.66 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.46 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.21 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.09 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.05 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.77 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.74 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.61 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.52 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.49 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.19 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.57 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.2 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.99 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.83 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.87 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.05 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.4 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.3 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.77 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.58 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.8 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.45 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 85.91 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.39 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.95 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.31 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.11 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.08 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 83.83 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.36 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.79 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.69 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.44 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.18 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.64 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=258.29 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---------hH
Q 041816 160 HGFVVLGRILRSCFTPD-AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH---------TI 229 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---------~~ 229 (396)
.+..+.+++.+.+.... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34455566666655443 345788889999999999999999999998999999999999998887654 67
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 309 (396)
+|.++|++|...+ +.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 88 ~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 88 RGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 8999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 310 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
+|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=255.58 Aligned_cols=195 Identities=16% Similarity=0.222 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+...++ .
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------~ 81 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------S 81 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------------------------S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------------------------h
Confidence 35555555555555555555555555555555555555555555544432110 0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
+.+.+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.+ +.||..+|+.+|.+|++.|+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG------IQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHTTC
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCccceehHHHHHHHHCCC
Confidence 112245556666666666666666666666666666666666666666666555 55666666666666666666
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666666666666655554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=237.15 Aligned_cols=299 Identities=11% Similarity=0.016 Sum_probs=271.9
Q ss_pred ccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 041816 75 KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 154 (396)
...+..+...|++++|+++|+.+.+. +++..+|+.++.++.+.|++++|+++|+++.+.+ +.+..++..++.++.+
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 34477888999999999999999876 3789999999999999999999999999998765 3478889999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 234 (396)
.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999765 4478999999999999999999999999998864 44788999999999999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|..+|+++
T Consensus 430 ~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 430 YTTAARLF-------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHTT-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999875 568899999999999999999999999999886544 7899999999999999999999999999
Q ss_pred HHC----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 315 MDQ----GVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 315 ~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+..
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 875 66787 7899999999999999999999999999863 4589999999999999999999999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=232.96 Aligned_cols=294 Identities=11% Similarity=-0.003 Sum_probs=261.8
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCCHhhHHHH--------------------------------------HHHHHhcC
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLL--------------------------------------FGCLAKTK 121 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~ 121 (396)
.+...|++++|+++|+++.+.++. +...+..+ +..|.+.|
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDAK--CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCch--hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 355678999999999999987764 44444433 44566789
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 201 (396)
++++|+++|+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|..+++
T Consensus 287 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 287 ELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998765 579999999999999999999999999999987644 78889999999999999999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 202 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998764 5578999999999999999999999999998864 56788999999999999999999999999988
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 041816 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN 357 (396)
Q Consensus 282 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 357 (396)
.+.. +..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 7543 88999999999999999999999999999764 447889999999999999999999999999876 66787
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 358 --TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 358 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-25 Score=197.89 Aligned_cols=299 Identities=15% Similarity=0.079 Sum_probs=252.0
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
++..+...|++++|+..|+++.+..| .+...|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcc
Confidence 34456677889999999999888654 467788888889999999999999998888754 224456677778888889
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 236 (396)
++++|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...++
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998887533 67888889999999999999999999988875 3467788888999999999999999999
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+..... +.+..++..+..+|.+.|++++|.+.|+++.+.+.. +..+|..+...+.+.|++++|...++++.+
T Consensus 228 ~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 228 RALSLS-------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhhC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888764 456788999999999999999999999999887544 677899999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+. .|+
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~ 371 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT 371 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTT
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Confidence 63 567889999999999999999999999999886 3456889999999999999999999999999873 454
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-24 Score=191.16 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=259.5
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|...++..++..+ .+...|..+..++.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 4456789999999999988765 588899999999999999999999999998754 2356679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|.+.|+++++..+. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++..
T Consensus 120 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 120 AVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999987643 56778889999999999999999999998874 44688999999999999999999999999998
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 320 (396)
.. +.+...|..+...+...|++++|...|++....... +..++..+...+...|++++|...++++.+.+ +
T Consensus 198 ~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 198 LD-------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred cC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 75 566788999999999999999999999999876543 67889999999999999999999999999864 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 321 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+..+|..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35778999999999999999999999999987 4668899999999999999999999999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-23 Score=188.97 Aligned_cols=296 Identities=11% Similarity=0.064 Sum_probs=253.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+.+|+.+++..+ .+...|..+..++...|++++|++.|+++.+.+ +.+...+..+..++.+.|++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 345567899999999999998755 478999999999999999999999999998865 34678899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDA---VAFTSL------------IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
++|...|+++.+.... +. ..+..+ ...+...|++++|...|+++.+.. +.+..++..+..+|.
T Consensus 111 ~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 111 DEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 9999999999987532 34 555555 444889999999999999998875 457889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH---------
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL--------- 294 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 294 (396)
+.|++++|...|+++.... +.+..+|..+..+|...|++++|...|+++...... +...+..+
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 9999999999999998864 567899999999999999999999999999876433 44445444
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 041816 295 ---IHGFCYANDWNEANCLLIEMMDQGVQPD-----VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366 (396)
Q Consensus 295 ---i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 366 (396)
...+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 78899999999999999999975 344 447888999999999999999999999875 2447899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 367 GFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
+|...|++++|.+.|+++.+. .|+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~--~p~ 361 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH--NEN 361 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--SSS
T ss_pred HHHHhcCHHHHHHHHHHHHHh--Ccc
Confidence 999999999999999999874 454
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-20 Score=167.00 Aligned_cols=295 Identities=10% Similarity=0.050 Sum_probs=249.5
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
..+...|++++|+..|+.+++..+. +...|..+..++...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 3455678999999999999997664 78899999999999999999999999998764 23678899999999999999
Q ss_pred hhHHHHHHHHHhcCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 159 SHGFVVLGRILRSCFT--PDAVAFTSL------------IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+..++..+...+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 9999999999987530 245555544 578899999999999999998875 4578889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHH------------
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN------------ 292 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------------ 292 (396)
.|++++|...++++.... +.+..++..+...+...|++++|.+.|+...+.... +...+.
T Consensus 167 ~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHH
Confidence 999999999999999875 667889999999999999999999999999876433 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPD-V----VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.+...+...|++++|...++++.+.. |+ . ..+..+..++...|++++|...+++..+. .+.+...+..+...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 23667889999999999999998754 33 2 23556788999999999999999999986 34478999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 041816 368 FCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 368 ~~~~g~~~~A~~~~~~m~~~g 388 (396)
+...|++++|.+.|++..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-21 Score=177.93 Aligned_cols=282 Identities=13% Similarity=0.078 Sum_probs=233.0
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 90 AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
+...|..+....+ .++..|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...+++++
T Consensus 11 ~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455544433 578899999999999999999999999998754 3478899999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH---HHHHHH------------HHHHHhcCChHHHHHH
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV---ITYSTL------------INGLCRTGHTIVALNL 234 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~ 234 (396)
+.++. +..++..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|+..
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88643 68899999999999999999999999999874 2344 566555 4448999999999999
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
++++.... +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..+...|...|++++|...++++
T Consensus 166 ~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 166 LDKILEVC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999875 567889999999999999999999999999876433 7889999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 041816 315 MDQGVQPDVVTFNVI------------MDELCKNGKMDEASRLLELMILRGVNPN-----TSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 315 ~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A 377 (396)
.+.. +.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 8753 2234444444 78899999999999999999985 444 45788899999999999999
Q ss_pred HHHHHHHHhC
Q 041816 378 KELFVSMESM 387 (396)
Q Consensus 378 ~~~~~~m~~~ 387 (396)
...++++.+.
T Consensus 315 ~~~~~~a~~~ 324 (450)
T 2y4t_A 315 IRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=172.60 Aligned_cols=292 Identities=12% Similarity=0.009 Sum_probs=235.2
Q ss_pred CccccCChhHHHH-HHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 80 GDITAITPNEAFC-IFDYMLNMRPSPP--PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 80 ~~~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.+...|++++|++ .|++.....+..| +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556688999998 9998776655433 35678889999999999999999999999875 347788999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH---------------HHHH
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST---------------LING 221 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---------------ll~~ 221 (396)
++++|...++++++..+ .+..++..+...|...|++++|...++++.+.... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999998764 37889999999999999999999999999987522 2222221 2334
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
+...|++++|...++++.... +. +..++..+...|.+.|++++|...|+++...... +..+|..+...+.
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 262 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLD-------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhC-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHH
Confidence 448999999999999999875 33 5789999999999999999999999999876433 6789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CCHHHHHHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN----------PNTSTFSTLMDGFC 369 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----------p~~~~~~~li~~~~ 369 (396)
..|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+.... ....+|..+..+|.
T Consensus 263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999998753 345788999999999999999999999998874111 12689999999999
Q ss_pred hcCCHHHHHHHHHH
Q 041816 370 LTGRVNHAKELFVS 383 (396)
Q Consensus 370 ~~g~~~~A~~~~~~ 383 (396)
..|++++|..++++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-20 Score=162.08 Aligned_cols=280 Identities=13% Similarity=0.051 Sum_probs=233.2
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-Chhh
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSH 160 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~ 160 (396)
...|++++|+++|+.+.+..+. +...+..++.++...|++++|..+++++.+.. +.+...+..+...+...| ++++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 3457899999999999987664 66778888888999999999999999998754 336778888999999999 9999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|...+++..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++..
T Consensus 110 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999987533 67788999999999999999999999998875 33566777899999999999999999999998
Q ss_pred cCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN--------INPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
.. +.+...+..+...+...|++++|...+++..+.. ......++..+...+...|++++|...++
T Consensus 188 ~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 188 IA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp TC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 75 5678899999999999999999999999987532 12345788999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF-CLTGRVN 375 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 375 (396)
++.+.. +.+...+..+..+|.+.|++++|.+.++++.+. .+.+...+..+..++ ...|+.+
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCCchHHHHHHHHHHHHHhCchh
Confidence 998764 345678889999999999999999999998875 234677788888777 4556543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-20 Score=161.23 Aligned_cols=271 Identities=12% Similarity=0.032 Sum_probs=236.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..+..+...+...|++++|+++++++.+.. +.+...+..++.++...|++++|..+++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888899999999999999999998764 335667777888999999999999999999987543 678899999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 185 KGLCAES-RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 185 ~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
..+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.... +.+...+..+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-------KGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCSHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------cccHHHHHHHHHHH
Confidence 9999999 9999999999999875 4467789999999999999999999999999875 45667888899999
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHhhHHHHHHHHHh
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--------VQPDVVTFNVIMDELCK 335 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~ 335 (396)
...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+.+...+..+..+|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999999887544 77889999999999999999999999988631 13345788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++..+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999863 447788999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=174.50 Aligned_cols=295 Identities=8% Similarity=-0.005 Sum_probs=249.2
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
|..+...|++++|+..|++++... |+...|..+..++.+.|++++|++.++++.+.+ +.+...|..+..++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 445667789999999999999976 478899999999999999999999999998865 3467789999999999999
Q ss_pred hhhHHHHHHHHHhcCCCC--------------------------------------------------------------
Q 041816 158 VSHGFVVLGRILRSCFTP-------------------------------------------------------------- 175 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 175 (396)
+++|...|+++.+.+...
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998765311
Q ss_pred ----------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CccHHHHHHHHHHHH
Q 041816 176 ----------------DAVAFTSLIKGLCA---ESRIMEAAALFTKLKA-----FGC--------KPNVITYSTLINGLC 223 (396)
Q Consensus 176 ----------------~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~ll~~~~ 223 (396)
+...+......+.. .|++++|..+|+++.+ ... +.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 13333334444443 8999999999999987 311 234667888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..|++++|...++++.... |+...+..+..++...|++++|.+.++++...... +...+..+...+...|+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence 9999999999999999865 33888999999999999999999999999887544 67789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999864 335678899999999999999999999999886 344678899999999999999999999999
Q ss_pred HHhC
Q 041816 384 MESM 387 (396)
Q Consensus 384 m~~~ 387 (396)
+.+.
T Consensus 398 a~~~ 401 (514)
T 2gw1_A 398 AIEL 401 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-20 Score=170.03 Aligned_cols=232 Identities=13% Similarity=-0.016 Sum_probs=136.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 223 (396)
++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 3344444445555555555555555444322 4445555555555555555555555554432 223445555555666
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 224 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
..|++++|...++++.... +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|+
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-------PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKND 387 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHhC-------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCC
Confidence 6666666666666665543 334556666666666666677776666666554322 45566666677777777
Q ss_pred HHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 304 WNEANCLLIEMMDQGV-QPD----VVTFNVIMDELCK---NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
+++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+. .+.+...+..+...|...|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHH
Confidence 7777777776664311 111 2266667777777 77777777777777664 2335666777777777777777
Q ss_pred HHHHHHHHHHhC
Q 041816 376 HAKELFVSMESM 387 (396)
Q Consensus 376 ~A~~~~~~m~~~ 387 (396)
+|.+.|++..+.
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-20 Score=164.46 Aligned_cols=265 Identities=12% Similarity=-0.030 Sum_probs=221.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++++..+ .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668899999999999999999999998865 34788999999999999999999999999998763 36889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcc-H----------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--C
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPN-V----------ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--N 252 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ 252 (396)
+|...|++++|...|+++.+.. |+ . ..+..+...+...|++++|...++++.... +. +
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 212 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-------GDMID 212 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-------CSSCC
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-------cCccC
Confidence 9999999999999999998763 22 2 223445888999999999999999999875 33 6
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 332 (396)
..++..+...|...|++++|.+.|++..+.... +..+|..+..+|...|++++|...++++.+.. +.+..++..+..+
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 889999999999999999999999999886543 78899999999999999999999999999863 3357889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 333 LCKNGKMDEASRLLELMILRGV---N--------PNTSTFSTLMDGFCLTGRVNHAKELFVS 383 (396)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 383 (396)
|...|++++|...|+++.+... . .+...|..+..++...|+.+.+.++.++
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999987410 0 1367899999999999999998887665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-19 Score=167.17 Aligned_cols=297 Identities=13% Similarity=0.104 Sum_probs=239.5
Q ss_pred cCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 76 SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
..+..+...|++++|+..|++++...| .++..|..+..++.+.|++++|++.++++.+.+ +.+..++..+..++...
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 345567778999999999999999876 488999999999999999999999999998865 34678899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCC-------------------------------------CHH--------------------
Q 041816 156 GRVSHGFVVLGRILRSCFTP-------------------------------------DAV-------------------- 178 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~-------------------------------------~~~-------------------- 178 (396)
|++++|...|+.+ .....+ +..
T Consensus 107 g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp TCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 9999999999633 221111 000
Q ss_pred ----------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcc-------HHHHHHHHHHHHhcCChHHHHH
Q 041816 179 ----------AFTSLIKGLCA--------ESRIMEAAALFTKLKAFGCKPN-------VITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 179 ----------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
....+...+.. .|++++|..+++++.+... .+ ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11122222211 2478899999999987642 23 2356777788899999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
.++++.... |+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+...|++++|...+++
T Consensus 265 ~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 265 LLQESINLH--------PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHC--------CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcC--------CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999864 56888999999999999999999999999886544 688899999999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++.+..
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99764 335678899999999999999999999999986 34567889999999999999999999999987643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-18 Score=150.48 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45678888999999999999999999998764 346788999999999999999999999999987533 6789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC--ccHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCK--PNVITYSTL------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.+...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.... +.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~ 152 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------VW 152 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC
Confidence 999999999999999999987420 245555555 578999999999999999999875 56
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH----
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN---- 327 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---- 327 (396)
+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 7889999999999999999999999999887543 78899999999999999999999999998753 22333332
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 328 --------VIMDELCKNGKMDEASRLLELMILRGVNPNT----STFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 328 --------~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|.+.+++..+.
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23667899999999999999999863 2233 33556778999999999999999999875
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=156.53 Aligned_cols=267 Identities=11% Similarity=-0.064 Sum_probs=222.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567778888999999999999999998764 34777888899999999999999999999998753 37888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTL--------------IN-GLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.... +
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~ 169 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------P 169 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-------T
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------C
Confidence 9999999999999999998764 2233333333 22 3778899999999999998875 5
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.+...+..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 57889999999999999999999999999876543 67889999999999999999999999998754 34578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNP-----------NTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
..|...|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999998752211 4788999999999999999999988754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-18 Score=160.30 Aligned_cols=297 Identities=12% Similarity=0.006 Sum_probs=223.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------------
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST--------------------- 136 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 136 (396)
+..+...|++++|++.|+++++..| .+...+..+..++...|++++|++.|+.+...
T Consensus 66 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 66 SACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 4456677899999999999998765 47888999999999999999998877433100
Q ss_pred --------------------------------------------------------------------------------
Q 041816 137 -------------------------------------------------------------------------------- 136 (396)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (396)
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence
Q ss_pred ------CCCCC--------HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 137 ------GLFPD--------LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202 (396)
Q Consensus 137 ------~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 202 (396)
...|+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 01111 1234455566677788888888888888764 4477777888888888888888888888
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 203 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+.+.. +.+..+|..+...+...|++++|...++++.... +.+...+..+..++...|++++|.+.++++.+.
T Consensus 302 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 302 AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87764 3467778888888888888888888888888764 445677888888888888888888888888776
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhc----------CCHHHHHHHHH
Q 041816 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-----VQPDVVTFNVIMDELCKN----------GKMDEASRLLE 347 (396)
Q Consensus 283 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~ 347 (396)
... +...+..+...+...|++++|...++++.+.. .......+......+... |++++|...|+
T Consensus 374 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 FPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp CTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 433 56678888888888888888888888877532 111112234445667777 88999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 348 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
++.+. .+.+...+..+...|...|++++|.+.|++..+..
T Consensus 453 ~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 453 KACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88876 24467889999999999999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=160.81 Aligned_cols=257 Identities=8% Similarity=-0.024 Sum_probs=211.0
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+.+|+++++..+ .+..+|..+..++...|++++|++.|+++.+.. +.+..++..+..++...|++++
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHH
Confidence 4456789999999999999766 478899999999999999999999999998864 3468889999999999999999
Q ss_pred HHHHHHHHHhcCCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCChHH
Q 041816 161 GFVVLGRILRSCFTP---------DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 161 a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~ 230 (396)
|...++++.+..... ....+..+...+...|++++|..+++++.+.... .+..++..+...|...|++++
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 999999998864210 1223345588899999999999999999987522 168899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
|+..++++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +..+|..+...|...|++++|...
T Consensus 232 A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 232 AIDAFNAALTVR-------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999875 567889999999999999999999999999886543 688899999999999999999999
Q ss_pred HHHHHHCCC---C--------CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 311 LIEMMDQGV---Q--------PDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 311 ~~~~~~~~~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
++++.+... . .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999886321 1 1357889999999999999998887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-19 Score=155.13 Aligned_cols=256 Identities=10% Similarity=-0.015 Sum_probs=215.6
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
...|++++|+.+|+.+.+..+. +...|..+..++...|++++|.+.++++.+.. +.+..++..+...+...|++++|
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 3457899999999999987654 78899999999999999999999999998764 34678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 162 FVVLGRILRSCFTPDAVAFTSL--------------IK-GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
.+.++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 109 LASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhc
Confidence 9999999986533 33333333 22 3778899999999999998875 447889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 306 (396)
++++|...++++.... +.+..++..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++
T Consensus 187 ~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 187 NYDSAAANLRRAVELR-------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHH
Confidence 9999999999998875 567889999999999999999999999999876543 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 307 ANCLLIEMMDQGVQP-----------DVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 307 a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
|...++++.+..... +...+..+..++.+.|+.++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999998753221 46788999999999999999999987544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-19 Score=156.89 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=216.3
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+..|+++++..+ .+...|..+..++...|++++|++.++++.+.. +.+..++..+...+...|++++
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4566889999999999999765 478899999999999999999999999998865 3478889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTS---------------LIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCR 224 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~ 224 (396)
|...++++.+.... +...+.. .+..+...|++++|...|+++.+..... +..++..+...|..
T Consensus 151 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 151 ACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp HHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 99999999987543 2222221 2333448899999999999998875221 58889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 304 (396)
.|++++|...++++.... +.+..++..+...+...|++++|.+.|+++.+.... +...+..+...|.+.|++
T Consensus 230 ~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH 301 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCH
Confidence 999999999999998875 566889999999999999999999999999876533 678899999999999999
Q ss_pred HHHHHHHHHHHHCCCC----------CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 305 NEANCLLIEMMDQGVQ----------PDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 305 ~~a~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
++|...++++.+.... ....+|..+..+|...|+.++|..++++.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999998864211 12678999999999999999999987643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-17 Score=142.68 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=204.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+..|+++.|+..++......+. ........+..+|...|++++|+..++.. -.|+..++..+...+...|+.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3467899999988876553332 12345566788899999999999866541 346777888888899999999999
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 162 FVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998876433 566777788899999999999999987 45788889999999999999999999999988
Q ss_pred cCCCCcccccCCHhh---HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 241 GNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.. |+... ...++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|...++++.+.
T Consensus 159 ~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 159 QD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 33221 12233445566899999999999988743 47888999999999999999999999998875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDE-ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 379 (396)
. +-+..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHH
Confidence 3 3467788889989999999876 57888888874 4443322 223344444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-20 Score=174.85 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=120.2
Q ss_pred cCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD---KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
..-..+|++||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 327 NVIMDELCKNGK-MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 327 ~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ .-+..|+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999998 478999999999999999999999998766544 334444444 3455554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-17 Score=140.56 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=206.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDL--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 115 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
......|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3456679999999999876543 3443 4556778999999999999986654 235678889999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 193 IMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
.++|++.++++...+. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999988764 34677788888999999999999999987 2467889999999999999999
Q ss_pred HHHHHHHHhhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 272 AKELFLQMKDKNINPDVVTY---NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348 (396)
Q Consensus 272 a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 348 (396)
|.+.|+.+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++
T Consensus 149 A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998874 443211 22334444568999999999999986 356788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCLTGRVNH-AKELFVSMESMG 388 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g 388 (396)
+.+. -+-+..++..++..+...|+.++ +.++++++.+..
T Consensus 226 al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 226 ALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9986 34578899999999999999976 578999988743
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=171.13 Aligned_cols=165 Identities=16% Similarity=0.207 Sum_probs=132.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNS---TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
..+||++|++|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccc--ccCCHhhHHHHH
Q 041816 184 IKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--CKPNTVTYTTII 260 (396)
Q Consensus 184 ~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~li 260 (396)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ...+... .+|...+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv---~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV---KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG---CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh---CcccCCCCCCcccccchHHHH
Confidence 999999998 578999999999999999999999998655543 333333333 3222211 112355666777
Q ss_pred HHHhccC---------CHHHHHHHHHH
Q 041816 261 DGLCKEG---------FVDKAKELFLQ 278 (396)
Q Consensus 261 ~~~~~~g---------~~~~a~~~~~~ 278 (396)
+.|.+.+ ..++-.++|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 7887755 23555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=133.96 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=179.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVA 179 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~ 179 (396)
....|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34567788888888899999999998888766 67788888888888999999999988888765322 11 577
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+..+...+...|++++|...|++..+.. |+. ..+...|++++|...++++.... +.+...+..+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 145 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHH
Confidence 8888888888899999999998888763 442 34566778888888888888764 4566778888
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 339 (396)
...+...|++++|.+.|++..+.... +...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888776543 67778888888888888888888888888753 33467788888888888888
Q ss_pred HHHHHHHHHHHhC
Q 041816 340 DEASRLLELMILR 352 (396)
Q Consensus 340 ~~A~~~~~~m~~~ 352 (396)
++|...+++..+.
T Consensus 224 ~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 224 ASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=151.43 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=112.5
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 456799999999998 23458999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 3457888999999999999999998884 367789999999999999999999999965
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a- 207 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA- 207 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH-
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH-
Confidence 369999999999999999999999981 78999999999999999999966554422 234
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT--GRVNHAKELFV 382 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 382 (396)
.-...++..|.+.|.+++|..+++...... +-....|+-|.-+|++- |+..+.++.|.
T Consensus 208 -d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 208 -DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred -hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 335578899999999999999999998653 44677788887777654 44555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-16 Score=130.70 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=196.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cc----HHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PN----VITY 215 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~ 215 (396)
...+..+...+...|++++|...+++.++.. .+..++..+..++...|++++|...+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888999999999999999999999887 68899999999999999999999999998875311 11 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 041816 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295 (396)
Q Consensus 216 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 295 (396)
..+...+...|++++|...++++.... |+. ..+.+.|++++|.+.++.+...... +...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--------RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--------chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHH
Confidence 999999999999999999999999854 443 4566778899999999999886433 667888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 375 (396)
..+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+. .+.+...|..+...+...|+++
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999764 346788999999999999999999999999986 3446889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 041816 376 HAKELFVSMESM 387 (396)
Q Consensus 376 ~A~~~~~~m~~~ 387 (396)
+|.+.|++..+.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-16 Score=129.50 Aligned_cols=199 Identities=12% Similarity=0.040 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. |.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHH
Confidence 455667777777777888888888888777664 3467777777778888888888888888877764 45667
Q ss_pred hHHHHHHHHhcc-----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 041816 255 TYTTIIDGLCKE-----------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 255 ~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
.+..+..++... |++++|+..|++..+..+. +...|..+...+...|++++|+..|+++.+.. .+.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 777777777777 9999999999999887554 67889999999999999999999999999877 688
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
..+..+..+|...|++++|...|+++.+. -+.+...+..+...+...|++++|...|++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999999999999999999986 34478889999999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-14 Score=131.60 Aligned_cols=283 Identities=10% Similarity=-0.007 Sum_probs=155.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----c
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----M 155 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 155 (396)
.+++++|+..|++..+.+ ++..+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 567777777777776643 45566666667766 667777777777776654 45556666666665 5
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCC
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TGH 227 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~ 227 (396)
+++++|.+.|++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 66777777777666654 45566666666665 566666666666665543 34445555555554 455
Q ss_pred hHHHHHHHHHHHhcCCCCc-----------c----------------cccCCHhhHHHHHHHHhcc-----CCHHHHHHH
Q 041816 228 TIVALNLFEEMANGNGKFG-----------V----------------VCKPNTVTYTTIIDGLCKE-----GFVDKAKEL 275 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~-----------~----------------~~~~~~~~~~~li~~~~~~-----g~~~~a~~~ 275 (396)
.++|..+|++..+.+.... . .-.-+...+..+...|... +++++|...
T Consensus 239 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 5555555555554330000 0 0000223333344444433 444445544
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHH
Q 041816 276 FLQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLEL 348 (396)
Q Consensus 276 ~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 348 (396)
|++..+.+ +...+..+...|...| ++++|...|++..+.| +...+..+...|.. .++.++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 44444432 2334444444444433 4455555555555432 34455555555555 5566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 349 MILRGVNPNTSTFSTLMDGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 349 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65543 34555555555555 566666666666655544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-14 Score=130.14 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=195.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---- 154 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 154 (396)
..+++++|+..|++..+.+ ++..+..|...|.. .+++++|++.|++..+.| +...+..+...|..
T Consensus 55 ~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 4688999999999998753 56788889999998 999999999999998865 66777888888888
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cC
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TG 226 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g 226 (396)
.+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 789999999999999876 67788888888887 789999999999999875 67888899999988 89
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-- 300 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 300 (396)
+.++|..+|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 202 ~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGL 269 (490)
T ss_dssp CHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCC
Confidence 9999999999998765 44566666666664 667777777777766553 34455555555555
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 041816 301 --ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-----GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG- 372 (396)
Q Consensus 301 --~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 372 (396)
.+++++|...|++..+.| +...+..+...|... ++.++|...|++..+.| +...+..+...|...|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 566666666666665543 333444444455444 55555555555554432 2333333444443333
Q ss_pred --CHHHHHHHHHHHHh
Q 041816 373 --RVNHAKELFVSMES 386 (396)
Q Consensus 373 --~~~~A~~~~~~m~~ 386 (396)
+.++|.++|++..+
T Consensus 344 ~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 34444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=133.98 Aligned_cols=253 Identities=11% Similarity=-0.070 Sum_probs=165.5
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 155 (396)
+......|++++|+..|+.+++..+. +.+...|..+..++...|++++|++.|+++.+.. +.+...|..+...+...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 34556678899999999998886432 2356678888888888899999999998887754 23577788888888888
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 235 (396)
|++++|...++++++.... +..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888888888888876533 56777788888888888888888888887753 33333334444556667888888888
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
++..... +++...+ .++..+...++.++|.+.++......... +...+..+...|...|++++|...++
T Consensus 168 ~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 168 KQHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7766653 3333333 36666667777777777777765542110 13455556666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
++.+.. |+. +.....++...|++++|++.+
T Consensus 240 ~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 665532 321 122233444555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-16 Score=127.51 Aligned_cols=199 Identities=17% Similarity=0.034 Sum_probs=142.1
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
++...+..+...+.+.|++++|...|++.++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34455566666666666666666666666665432 56666666666666666666666666666653 33455666666
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCCh
Q 041816 220 NGLCRT-----------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 220 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
.++... |++++|+..+++..+.. +.+...+..+..++...|++++|+..|++..+.. .+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 666666 99999999999999875 5578899999999999999999999999998877 588
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
..+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999863 3457788899999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-15 Score=126.88 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIK 185 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 185 (396)
..+......+...|++++|+..|+++.+... .+...+..+..++...|++++|+..+++..+....+ ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566677777778888888877776542 244467777777777788888887777777632111 2334677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.+...|++++|+..|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+...|..+...+..
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-------TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------CCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------CCcHHHHHHHHHHHHH
Confidence 7777788888888887777654 3355677777777888888888888887777653 4456666666623333
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhhHHHHHHHHHh
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQG-VQPD------VVTFNVIMDELCK 335 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~ 335 (396)
.+++++|.+.|+++.+.... +...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|..
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 44788888888777765432 45666667777777776 777777777766431 1122 1466667777778
Q ss_pred cCCHHHHHHHHHHHHhC
Q 041816 336 NGKMDEASRLLELMILR 352 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~ 352 (396)
.|++++|.+.|+++.+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888888888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=134.64 Aligned_cols=250 Identities=7% Similarity=0.032 Sum_probs=207.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
.....|+.+..++...|++++|++.++++.+.. +-+...|+.+..++...|+ +++|+..++++++..+. +..+|..+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 456788889999999999999999999998865 2367788999999999997 99999999999998754 78999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
..++...|++++|+..|+++.+.. +-+..+|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 999999999999999999999875 4578999999999999999999999999999976 66788999999999
Q ss_pred hc-cCCHHHH-----HHHHHHHhhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 264 CK-EGFVDKA-----KELFLQMKDKNINPDVVTYNSLIHGFCYAN--DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 264 ~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
.+ .|..++| ++.|++....... +...|+.+...+...| ++++|...+.++ +. .+.+...+..+..+|.+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHH
Confidence 99 6665777 5888888876544 6778999988898888 689999999888 33 34456788889999988
Q ss_pred cC---------CHHHHHHHHHHH-HhCCCCC-CHHHHHHHHHHHH
Q 041816 336 NG---------KMDEASRLLELM-ILRGVNP-NTSTFSTLMDGFC 369 (396)
Q Consensus 336 ~g---------~~~~A~~~~~~m-~~~g~~p-~~~~~~~li~~~~ 369 (396)
.| ..++|.++++++ .+. .| ....|..+...+.
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 74 358999999998 553 44 4455665555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-14 Score=121.24 Aligned_cols=225 Identities=10% Similarity=-0.065 Sum_probs=179.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
.++..+..+...+...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 46677888888888888999999999888873 356677778888888 888999999888888875 67778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCC
Q 041816 181 TSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPN 252 (396)
Q Consensus 181 ~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (396)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~ 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------D 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------c
Confidence 888888888 888899998888888764 67778888888888 888888888888888754 4
Q ss_pred HhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHh
Q 041816 253 TVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVV 324 (396)
Q Consensus 253 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~ 324 (396)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5667777777777 888888888888887764 56677778888888 888888888888888764 256
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 325 TFNVIMDELCK----NGKMDEASRLLELMILRG 353 (396)
Q Consensus 325 ~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 353 (396)
.+..+...|.. .+++++|.+.|++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777877 788888888888887753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-14 Score=119.87 Aligned_cols=224 Identities=15% Similarity=-0.032 Sum_probs=199.9
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYS 216 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 216 (396)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778888899999999999999999999843 56788889999999 999999999999999876 778899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCCh
Q 041816 217 TLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 217 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 99999999 999999999999998864 67889999999999 999999999999999876 66
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 041816 289 VTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGVNPNTST 360 (396)
Q Consensus 289 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 360 (396)
..+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 788888888888 999999999999999864 56788889999999 999999999999999864 3778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 361 FSTLMDGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 361 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
+..+...|.. .+++++|.++|++..+.|
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888899998 999999999999998876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=140.70 Aligned_cols=264 Identities=13% Similarity=0.089 Sum_probs=135.0
Q ss_pred HhccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 73 RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 73 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
....++.++...|++++|++.|.+. ++...|..++.++...|++++|+..++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4456788899999999999999764 57778999999999999999999988777663 45678899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999888874 367789999999999999999999999976 36999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 312 (396)
+.++++. ++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++
T Consensus 169 ea~~KA~------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 169 DGARKAN------------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHHT------------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcC------------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999872 58999999999999999999966555432 244446679999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNP------NTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 313 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
...... +-....|+-+.-.|++- ++++.++.++....+ .++| +...|..++..|.+.++++.|...
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 988654 44567788887777765 234444333333222 2233 467799999999999999988763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=122.14 Aligned_cols=201 Identities=12% Similarity=-0.047 Sum_probs=121.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4456666666777777777777777766543 234556666666666777777777777766665422 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHH
Confidence 666666666666666666522222 44555666666666666666666666666543 3345556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.|++++|...++++.+... .+...+..+...+...|++++|...++++.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666666666655432 24445555555556666666666666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-16 Score=131.14 Aligned_cols=248 Identities=11% Similarity=-0.020 Sum_probs=195.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 041816 118 AKTKHYDTVLSLFKRLNSTGLF---PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (396)
...|++++|++.++++.+.... .+..++..+...+...|++++|...|+++++..+. +..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 3458899999999999876321 24567888999999999999999999999987643 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
+|...|+++.+.. +.+..++..+...|...|++++|...++++.+.. |+.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999874 3467889999999999999999999999999864 444444555556677899999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ---PDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 275 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.+++...... ++... ..++..+...++.++|...+.++.+.... .+...+..+...|...|++++|...|+++.+
T Consensus 166 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKSD-KEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHSC-CCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-cchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9988876532 24334 44777788889999999999988754211 1157888999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 352 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
. .|+. +.....++...|++++|++.+
T Consensus 244 ~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 N--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred C--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5 3422 333355777889999988776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-14 Score=121.39 Aligned_cols=202 Identities=13% Similarity=-0.040 Sum_probs=160.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
...+..+...+...|++++|.+.++++.+... .+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45677788888899999999999999887653 367888888888999999999999999888764 3467788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
|...|++++|.+.++++...+. .+.+...+..+..++...|++++|.+.|++..+.... +...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHc
Confidence 8999999999999988877210 1345677888888888888898888888888776433 567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888887653 345667777788888888888888888888775
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-15 Score=124.97 Aligned_cols=237 Identities=8% Similarity=0.042 Sum_probs=193.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP--NVITYSTLI 219 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ll 219 (396)
...+......+...|++++|+..+++.++..+. +...+..+..+|...|++++|+..+++..+.+..+ ...+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 445667778899999999999999999987543 56688889999999999999999999998843222 234588999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
..+...|++++|+..+++..+.. +.+..++..+...|...|++++|.+.|++..+.... +...|..+...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHH
Confidence 99999999999999999999875 556789999999999999999999999999887433 6677777773444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRG-VNPN------TSTFSTLMDGFC 369 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~ 369 (396)
..+++++|...++++.+.. +.+...+..+..++...|+ .++|...++++.+.. -.|+ ...|..+...|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5569999999999999853 3346778888888888888 888999998887641 1133 267888999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 041816 370 LTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 370 ~~g~~~~A~~~~~~m~~~g 388 (396)
..|++++|.+.|++..+..
T Consensus 233 ~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD 251 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999998754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-15 Score=130.57 Aligned_cols=233 Identities=12% Similarity=0.034 Sum_probs=200.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
...|..+...+...|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|+++.+.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456777888899999999999999999998644 78899999999999997 999999999999875 447889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|+..|+++.+.+.. +...|+.+..++..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999986 678899999999999999999999999999988665 78899999999999
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 041816 301 -ANDWNEA-----NCLLIEMMDQGVQPDVVTFNVIMDELCKNG--KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372 (396)
Q Consensus 301 -~~~~~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 372 (396)
.|..++| +..+++.++.. +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 6665777 58888888753 335678888899999888 689999999988 33 4557788899999998874
Q ss_pred ---------CHHHHHHHHHHH-HhC
Q 041816 373 ---------RVNHAKELFVSM-ESM 387 (396)
Q Consensus 373 ---------~~~~A~~~~~~m-~~~ 387 (396)
..++|.++|+++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 358999999998 553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-14 Score=118.15 Aligned_cols=203 Identities=10% Similarity=-0.051 Sum_probs=122.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345566666777777777777777777766543 23455666666667777777777777776666542 2555666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 185 KGLCAE-SRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 185 ~~~~~~-g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~ 156 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------PQFPPAFKELART 156 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCchHHHHHHHH
Confidence 666666 66666666666666522122 24556666666666666666666666666543 3345556666666
Q ss_pred HhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+...|++++|.+.++++.+.....+...+..+...+...|+.+++..+++.+.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666666666666655543212444455555555556666666665555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-15 Score=124.76 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444444444455555555555544432 12344444444444455555555555554444321 13444444445555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHcCC
Confidence 5555555555555444432 2234444444555555555555555555544432 2334444444444445555
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 269 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+++|.+.|+++.+.... +..++..+...+...|++++|...++++.+
T Consensus 175 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555444433221 333444444444444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-15 Score=124.40 Aligned_cols=213 Identities=13% Similarity=0.041 Sum_probs=157.1
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
.....|..+...+...|++++|...++++++... .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456677788888899999999999999988653 368888889999999999999999999988764 34678888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
..+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 99999999999999999988865 557778888899999999999999999998876433 6778888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 364 (396)
..|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.. +.+...+..+
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 9999999999999888753 3457788888889999999999999999888752 3344444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-14 Score=116.92 Aligned_cols=203 Identities=8% Similarity=-0.051 Sum_probs=120.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+...+..+...+...|++++|.+.++.+.+... .+...+..+...|...|++++|..+++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344556666666666777777777666666542 245566666666666666666666666666543 234556666666
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 221 GLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 221 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+... |++++|...++++..... .+.+...+..+..++...|++++|.+.|+++.+.... +...+..+...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 158 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKM 158 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 66666 666666666666665210 1223455666666666666666666666666554322 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666665532113444555555555666666666666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-13 Score=125.87 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=130.0
Q ss_pred cHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHH
Q 041816 211 NVITYSTLINGLCR-------TGHTI-------VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276 (396)
Q Consensus 211 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (396)
+...|..++..+.+ .|+++ +|..++++..+.. .+.+...|..++..+.+.|++++|..+|
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555555554 68876 8899999888632 2557889999999999999999999999
Q ss_pred HHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCC
Q 041816 277 LQMKDKNINPD-VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE-LCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 277 ~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+...+. .
T Consensus 345 ~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~ 421 (530)
T 2ooe_A 345 NRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-Y 421 (530)
T ss_dssp HHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-H
T ss_pred HHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-C
Confidence 999986322 3 2578888888889999999999999998752 2223333322222 34689999999999998876 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
+.+...|..++..+.+.|+.++|..+|++....+
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 4468899999999999999999999999998864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-14 Score=128.52 Aligned_cols=299 Identities=10% Similarity=-0.051 Sum_probs=216.8
Q ss_pred CCCccccCChhHHHHHHHHHHhc-------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-C-CCCHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNM-------RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----G-L-FPDLY 143 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~-~p~~~ 143 (396)
|..+...|++++|++.|++.++. ...+....+|+.+..+|...|++++|...+++..+. + . .....
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 44455678999999999987653 123346778999999999999999999999887542 1 0 11345
Q ss_pred hHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 144 TYNILINCFCKM--GRVSHGFVVLGRILRSCFTPDAVAFTSLIKG---LCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 144 ~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
++.....++... +++++|++.|++.++..+. +...+..+..+ +...++.++|++.+++..+.. +.+..++..+
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l 215 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHH
Confidence 666665555554 4689999999999987643 56666555555 345677788999999888765 3456667666
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041816 219 INGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294 (396)
Q Consensus 219 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 294 (396)
...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++..+
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 655554 467789999999988875 667888999999999999999999999999886544 56667766
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 041816 295 IHGFCYA-------------------NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355 (396)
Q Consensus 295 i~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 355 (396)
...|... +.+++|...+++..+.. +.+...+..+...|...|++++|...|++..+....
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 6655332 23567888888877653 345668889999999999999999999999886433
Q ss_pred CCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 041816 356 PNT--STFSTLMD-GFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 356 p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 387 (396)
+.. ..+..+.. .....|+.++|+..|++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 322 12333332 335789999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-15 Score=134.46 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhc----C-CCCCHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSHGFVVLGRILRS----C-FTPDAV 178 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 178 (396)
..+..+...+...|++++|+..|+++.+.+. .+. ..+..+...+...|++++|...+++.++. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444566677788888888888888877532 122 46777778888888888888888877653 1 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCccHHHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF----G-CKPNVITYSTLINGLCRTGH-----------------TIVALNLFE 236 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 236 (396)
++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7778888888899999999888877654 1 12235577888888999999 888888888
Q ss_pred HHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+........+. .+....++..+...|...|++++|.+.+++..+.... .+ ...+..+...|...|++++|...+
T Consensus 208 ~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 76543100000 1123457888899999999999999999998653211 11 237888999999999999999999
Q ss_pred HHHHHCCC----C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 312 IEMMDQGV----Q-PDVVTFNVIMDELCKNGKMDEASRLLELMILR----GV-NPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 312 ~~~~~~~~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
++..+... . ....++..+...|...|++++|...+++..+. +. .....++..+...|...|++++|.++|
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 98875311 0 11467888999999999999999999988763 11 112457888899999999999999999
Q ss_pred HHHHhC
Q 041816 382 VSMESM 387 (396)
Q Consensus 382 ~~m~~~ 387 (396)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-13 Score=125.53 Aligned_cols=278 Identities=14% Similarity=-0.006 Sum_probs=204.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC-
Q 041816 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----G---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC- 172 (396)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 172 (396)
..+.....||.|..++...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 33345678999999999999999999999987542 1 12245689999999999999999999999886531
Q ss_pred -----C-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCccHHHHHHHHHH---HHhcCChHHHHHHHHHHHhc
Q 041816 173 -----F-TPDAVAFTSLIKGLCAE--SRIMEAAALFTKLKAFGCKPNVITYSTLING---LCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 173 -----~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~ 241 (396)
. .....++..+..++... +++++|+..|++..+.. +-+...+..+..+ +...++.++|++.+++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 12355666666555554 57999999999998874 3355666655554 44568888999999998886
Q ss_pred CCCCcccccCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLC----KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
. +.+..++..+...+. ..|++++|.+++++....... +...+..+...|...|++++|...+.++.+.
T Consensus 205 ~-------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 205 N-------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp C-------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 5 456666766655544 356788999999998876544 7778999999999999999999999999875
Q ss_pred CCCCCHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKN-------------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
. +-+..++..+..+|... +..++|...+++..+. -+.+...+..+...|...|++++|.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHH
Confidence 3 23456666666655432 2356778888887765 2345677888999999999999999
Q ss_pred HHHHHHHhCCCC
Q 041816 379 ELFVSMESMGCK 390 (396)
Q Consensus 379 ~~~~~m~~~g~~ 390 (396)
+.|++..+....
T Consensus 355 ~~~~kaL~~~~~ 366 (472)
T 4g1t_A 355 YYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHhcCCC
Confidence 999999876543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=131.40 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=212.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCC-C
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS----CFT-P 175 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 175 (396)
.....+......+...|++++|+..|+++.+.+. .+ ...+..+...+...|++++|...+++.++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4566677788889999999999999999987642 23 356788888999999999999999987653 111 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-ccHHHHHHHHHHHHhcCC--------------------hHH
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----CK-PNVITYSTLINGLCRTGH--------------------TIV 230 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~-~~~~~~~~ll~~~~~~g~--------------------~~~ 230 (396)
...++..+...|...|++++|...+++..+.. .. ....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35677888899999999999999998876541 11 114478888999999999 999
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~ 305 (396)
|...+++........+. .+....++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99999887653210000 1122457888899999999999999999998653111 12 337888999999999999
Q ss_pred HHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 041816 306 EANCLLIEMMDQ----GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTSTFSTLMDGFCLTGRVN 375 (396)
Q Consensus 306 ~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~ 375 (396)
+|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998743 11111 457888999999999999999999988753 1111 1567888889999999999
Q ss_pred HHHHHHHHHHh
Q 041816 376 HAKELFVSMES 386 (396)
Q Consensus 376 ~A~~~~~~m~~ 386 (396)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=134.59 Aligned_cols=293 Identities=14% Similarity=0.070 Sum_probs=218.2
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFC 153 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~ 153 (396)
+...|++++|+..|+++++..+..+. ..+|..+..++...|++++|+..+++.... +-.| ...++..+...+.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 45668899999999999998654222 357888999999999999999999987542 2112 2456788888999
Q ss_pred hcCChhhHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc--
Q 041816 154 KMGRVSHGFVVLGRILRSCFT-----PDAVAFTSLIKGLCAESR--------------------IMEAAALFTKLKAF-- 206 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~-- 206 (396)
..|++++|...+++..+.... ....++..+...|...|+ +++|...+++..+.
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988764211 124578888999999999 99999999876543
Q ss_pred --CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 207 --GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 207 --g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
+.. ....++..+...|...|++++|...+++........+. ......++..+...|...|++++|...+++.....
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 211 12457888999999999999999999998764311000 01113478889999999999999999999876431
Q ss_pred CC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 041816 284 IN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQP-DVVTFNVIMDELCKNGKMDEASRLLELMILR- 352 (396)
Q Consensus 284 ~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 352 (396)
.. .+ ..++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 01 557888999999999999999999998753 1111 1457888999999999999999999987753
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCH
Q 041816 353 ---GVN-PNTSTFSTLMDGFCLTGRV 374 (396)
Q Consensus 353 ---g~~-p~~~~~~~li~~~~~~g~~ 374 (396)
+.. ....++..+...+...|+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 211 1245667777777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-15 Score=133.72 Aligned_cols=273 Identities=13% Similarity=0.071 Sum_probs=207.9
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHhHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GL-FPDLYTYNILINC 151 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~li~~ 151 (396)
..+...|++++|+..|+++++..+..+. ...|..+..++...|++++|++.+++..+. +- ......+..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3445678999999999999998654221 157888999999999999999999988653 11 1234577888899
Q ss_pred HHhcCChhhHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhc---
Q 041816 152 FCKMGRVSHGFVVLGRILRSC-----FTPDAVAFTSLIKGLCAESR-----------------IMEAAALFTKLKAF--- 206 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~--- 206 (396)
+...|++++|...+++..+.. ......++..+...|...|+ +++|+..+++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887641 12235578889999999999 99999999886543
Q ss_pred -CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 207 -GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 207 -g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
+. .....++..+...|...|++++|+..+++........+. .......+..+...|...|++++|.+.+++......
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 21 113457888999999999999999999998764310000 001123788899999999999999999998765311
Q ss_pred C-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 285 N-----PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 285 ~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
. ....++..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1 12567888999999999999999999998753 111 11347788999999999999999999998864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=126.74 Aligned_cols=278 Identities=13% Similarity=0.030 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CC-CCCHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS----CF-TPDAV 178 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 178 (396)
..+......+...|++++|+..|+++.+... .+ ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566677888889999998888877532 13 356777888888889999888888877543 11 12356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ccc----HHHHHHHHHHHHhcCC--------------------hHHHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPN----VITYSTLINGLCRTGH--------------------TIVALN 233 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~ 233 (396)
++..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 777888888899999999998888765310 011 3477888888999999 888988
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCCHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-----NPDVVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~li~~~~~~~~~~~a~ 308 (396)
.+++........+. .+.....+..+...+...|++++|.+.+++..+... .....++..+...+...|++++|.
T Consensus 165 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 165 LYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88876543100000 112245788888999999999999999998764311 111337888899999999999999
Q ss_pred HHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 041816 309 CLLIEMMDQ----GVQP-DVVTFNVIMDELCKNGKMDEASRLLELMILR----GVN-PNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 309 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
..+++..+. +..+ ...++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988743 1111 1457788899999999999999999988753 111 12457788899999999999999
Q ss_pred HHHHHHHhC
Q 041816 379 ELFVSMESM 387 (396)
Q Consensus 379 ~~~~~m~~~ 387 (396)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-13 Score=116.48 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhC-CCCCCHHhHHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-------TKHY-------DTVLSLFKRLNST-GLFPDLYTYNILINCF 152 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~p~~~~~~~li~~~ 152 (396)
++|+.+|++++...| .++..|..++..+.. .|++ ++|..+|++..+. . +-+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 789999999998765 488889888887763 4775 8899999888873 3 23556788888888
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hcCChHH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAV-AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC-RTGHTIV 230 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~ 230 (396)
.+.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999988875432 333 78888888888888888888888888764 234445544333322 3688888
Q ss_pred HHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHH
Q 041816 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INP--DVVTYNSLIHGFCYANDWNEA 307 (396)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~~~~~~a 307 (396)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|
T Consensus 188 A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 188 AFKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888887753 4567788888888888888888888888887752 333 355677777777788888888
Q ss_pred HHHHHHHHHC
Q 041816 308 NCLLIEMMDQ 317 (396)
Q Consensus 308 ~~~~~~~~~~ 317 (396)
..+++++.+.
T Consensus 261 ~~~~~~a~~~ 270 (308)
T 2ond_A 261 LKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-12 Score=113.04 Aligned_cols=217 Identities=9% Similarity=0.024 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 041816 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFC-------KMGRV-------SHGFVVLGRILRS-CFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 188 (396)
++|..+|+++.... +-+...|..++..+. +.|++ ++|..+|++.++. . +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 67888888887753 346777877777765 35776 8899999998873 3 336778888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcc-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh-c
Q 041816 189 AESRIMEAAALFTKLKAFGCKPN-VI-TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC-K 265 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~ 265 (396)
+.|++++|..+|++..+.. |+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... .
T Consensus 111 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHH
Confidence 9999999999999988753 33 33 78888888888999999999999988764 344455554443322 3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCCHHHH
Q 041816 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQP--DVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A 342 (396)
.|++++|.++|+...+.... +...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 68899999999888775433 67788888888888899999999999888863 344 356788888888888999999
Q ss_pred HHHHHHHHhC
Q 041816 343 SRLLELMILR 352 (396)
Q Consensus 343 ~~~~~~m~~~ 352 (396)
..+++++.+.
T Consensus 261 ~~~~~~a~~~ 270 (308)
T 2ond_A 261 LKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=127.87 Aligned_cols=273 Identities=14% Similarity=0.074 Sum_probs=205.7
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPPP--LTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLF-PDLYTYNILINC 151 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~ 151 (396)
..+...|++++|+..|+++++..+..+. ...+..+...+...|++++|++.+++..+. +-. ....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3445678999999999999997654221 467888999999999999999999987542 111 124577888899
Q ss_pred HHhcCChhhHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFT-PD----AVAFTSLIKGLCAESR--------------------IMEAAALFTKLKAF 206 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~ 206 (396)
+...|++++|...+.+..+.... .+ ..++..+...+...|+ +++|...+++..+.
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753211 12 4478888899999999 99999999886543
Q ss_pred ----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 207 ----GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 207 ----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+. .....++..+...+...|++++|...+++........+. ......++..+...+...|++++|.+.+++...
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 112457888899999999999999999988754210000 011234788889999999999999999998764
Q ss_pred CCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 282 KNIN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 282 ~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.... .+ ..++..+...+...|++++|...++++.+. +.. ....++..+...|.+.|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3111 11 557788899999999999999999988753 111 1144778899999999999999999999887
Q ss_pred C
Q 041816 352 R 352 (396)
Q Consensus 352 ~ 352 (396)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=124.17 Aligned_cols=299 Identities=8% Similarity=-0.068 Sum_probs=210.6
Q ss_pred cccCChhHHHHHHHHHHhcCCC---CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHHHhCCCCCCHHh-
Q 041816 82 ITAITPNEAFCIFDYMLNMRPS---PPPLTSFNLLFGCL--AKTKHYDTVL-----------SLFKRLNSTGLFPDLYT- 144 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~p~~~~- 144 (396)
+..+++++|..+.+.+.+.-.. .++...|..++..- ...++++.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 3457899999999988654221 23344444443321 1224444444 6666665421 11111
Q ss_pred -----HHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C----
Q 041816 145 -----YNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--C---- 208 (396)
Q Consensus 145 -----~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g--~---- 208 (396)
+......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.. .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 222556678899999999999999864 1111 35678899999999999999999999877541 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CC
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KN 283 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~ 283 (396)
+....+++.+...|...|++++|...+++........+. .+....++..+...|...|++++|.+.|++..+ ..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112457888999999999999999999998764310000 011124788899999999999999999999876 32
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 041816 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRGVNP 356 (396)
Q Consensus 284 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p 356 (396)
......++..+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 1334677899999999999999999999998753 111122345778888889999 77777777765 2233
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 357 -NTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 357 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
....+..+...|...|++++|.+.|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677888999999999999999999875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-12 Score=117.43 Aligned_cols=218 Identities=9% Similarity=0.041 Sum_probs=172.2
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCA-------ESRIM-------EAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
++..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566777777653 3367788888888775 68877 8999999998632345688999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCH-hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCC
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNT-VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG-FCYAND 303 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~ 303 (396)
|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+.... +...|...... +...|+
T Consensus 335 g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp TCHHHHHHHHHHHHHSS-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCcc-------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCC
Confidence 99999999999999854 2333 58999999999999999999999999876322 33333332222 336899
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNP--NTSTFSTLMDGFCLTGRVNHAKEL 380 (396)
Q Consensus 304 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~ 380 (396)
+++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+..+
T Consensus 407 ~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998753 3357889999999999999999999999999863 233 255888888888899999999999
Q ss_pred HHHHHhC
Q 041816 381 FVSMESM 387 (396)
Q Consensus 381 ~~~m~~~ 387 (396)
++++.+.
T Consensus 486 ~~r~~~~ 492 (530)
T 2ooe_A 486 EKRRFTA 492 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-14 Score=127.86 Aligned_cols=212 Identities=13% Similarity=0.016 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY-DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
+++|++.++......+ .+...|..+..++...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777888887766443 5888999999999999999 99999999998764 235789999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CCh
Q 041816 166 GRILRSCFTPDAVAFTSLIKGLCAE---------SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT--------GHT 228 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--------g~~ 228 (396)
++.++.. |+...+..+...|... |++++|+..|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 5678999999999999 99999999999999875 44688999999999998 999
Q ss_pred HHHHHHHHHHHhcCCCCccccc---CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
++|+..|++..+.. + .+...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|+++
T Consensus 238 ~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 238 QQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999864 3 57889999999999999999999999998876544 6667888888888888888
Q ss_pred HHHHHHH
Q 041816 306 EANCLLI 312 (396)
Q Consensus 306 ~a~~~~~ 312 (396)
+|...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8876553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-13 Score=105.35 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=81.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
++..|..+..++...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455555555555555555555555554433 123444555555555555555555555555444322 3444444445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-------PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------chhhhHHHHHHHHHHH
Confidence 5555555555555555544432 2234444555555555555555555555554443 3344445555555555
Q ss_pred cCCHHHHHHHHHHHhh
Q 041816 266 EGFVDKAKELFLQMKD 281 (396)
Q Consensus 266 ~g~~~~a~~~~~~m~~ 281 (396)
.|++++|++.|++..+
T Consensus 154 ~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALE 169 (184)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5555555555555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=125.36 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=138.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc------
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-------GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS------ 171 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 171 (396)
....++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...+++.++.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999998763 22334567888899999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 172 CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------GC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
+. +....++..+...|...|++++|...+++..+. +. +....++..+...+...|++++|+..++++.....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 234677888999999999999999999988764 22 22456788899999999999999999999877510
Q ss_pred CC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 244 KF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 244 ~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.. +...+....++..+..+|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 000123355788889999999999999999998875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-13 Score=105.08 Aligned_cols=163 Identities=13% Similarity=0.023 Sum_probs=66.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 222 (396)
..|..+...+.+.|++++|++.|++.++..+. +..++..+..+|.+.|++++|...+.+..... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34444444444444444444444444443322 34444444444444444444444444443332 12333333444444
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 302 (396)
...++++.|...+++..... +.+...+..+..+|.+.|++++|++.|++..+.... +..+|..+..+|.+.|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCC
Confidence 44444444444444444332 223334444444444444444444444444333221 3333344444444444
Q ss_pred CHHHHHHHHHHHH
Q 041816 303 DWNEANCLLIEMM 315 (396)
Q Consensus 303 ~~~~a~~~~~~~~ 315 (396)
++++|...|++.+
T Consensus 156 ~~~~A~~~~~~al 168 (184)
T 3vtx_A 156 LRDEAVKYFKKAL 168 (184)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=126.37 Aligned_cols=217 Identities=8% Similarity=-0.034 Sum_probs=185.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
+.++++++.+++..... +.+...+..+...+...|++ ++|++.|++.++.... +...|..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888776543 34788899999999999999 9999999999987643 688999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRT---------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---- 266 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 266 (396)
|++..+.. |+..++..+...|... |++++|+..+++..+.. +.+...|..+..+|...
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhh
Confidence 99999874 6678899999999999 99999999999999875 56788999999999988
Q ss_pred ----CCHHHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 041816 267 ----GFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340 (396)
Q Consensus 267 ----g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 340 (396)
|++++|++.|++..+.... -+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...|+++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886431 278889999999999999999999999998753 334667888888888889888
Q ss_pred HHHHHHHHH
Q 041816 341 EASRLLELM 349 (396)
Q Consensus 341 ~A~~~~~~m 349 (396)
+|.+.+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 888765443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=123.86 Aligned_cols=245 Identities=14% Similarity=0.079 Sum_probs=173.8
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRS-------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------G 207 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g 207 (396)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999873 23345677889999999999999999999988764 2
Q ss_pred C-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC---
Q 041816 208 C-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--- 282 (396)
Q Consensus 208 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 282 (396)
. +....++..+...|...|++++|...++++.+..... +...+.....+..+...+...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 2346778899999999999999999999987641000 0001334567888999999999999999999998764
Q ss_pred ---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhh-------HHHHHHHHHhcCCHHHHHH
Q 041816 283 ---NINP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-------GVQPDVVT-------FNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 283 ---~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~-------~~~l~~~~~~~g~~~~A~~ 344 (396)
+..| ...++..+...|...|++++|...++++.+. ...+.... +..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3457888999999999999999999998853 11222222 2222333344455566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 345 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
.++..... .+....++..+..+|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666543 233567888999999999999999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-12 Score=110.95 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=177.1
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HhHHHH
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPL----TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDL----YTYNIL 148 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l 148 (396)
+..+...|++++|+..+++.+...+. .+. ..++.+...+...|++++|.+.+++...... ..+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34456678888888888887765543 222 2455666667777888888888777654210 0121 234556
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----ccHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRS----CFT--P-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK----PNVITYST 217 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~----~~~~~~~~ 217 (396)
...+...|++++|...+++.++. +.. | ....+..+...+...|++++|...+++..+.... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66677778888888877777653 111 2 2345556677777778888888888776654211 12345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-hhHH-----HHHHHHhccCCHHHHHHHHHHHhhCCCCCC---h
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-VTYT-----TIIDGLCKEGFVDKAKELFLQMKDKNINPD---V 288 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~ 288 (396)
+...+...|++++|...+++...... .++. ..+. ..+..+...|++++|...+++.......+. .
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLG------NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHT------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHh------ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 77777778888888888887776532 1111 1121 223346677888888888777765432211 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPDV-VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 363 (396)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g 327 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TG 327 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----cc
Confidence 23556667777778888888877776532 211222 255556667777788888888777777641 00 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 364 LMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
.+..+...| +....+++.+...
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcc--HHHHHHHHHHHhC
Confidence 223344444 5566666666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-12 Score=124.91 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=175.6
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
+..+...|.+++|+.+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 444566788999999999862 12222233322 567888888888755 246778888888888899
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
+++|++.|.+. -|...|..++.+|.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99888888653 367778888888888899999998888777654 33333445888888888877533332
Q ss_pred HHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
. .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++.
T Consensus 1191 --~---------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1191 --N---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred --h---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 1 245566777888888888888888888874 36888888888888888888888766
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 318 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
-+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 24466666666666666666666654432 2345555666666666677766666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-12 Score=123.00 Aligned_cols=251 Identities=12% Similarity=0.104 Sum_probs=199.8
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..+++++|.++.+++ .+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.
T Consensus 1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 445677777777755 46788999999999999999999999764 37788899999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
+.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|..+
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9999888765 33333445999999999998644443 2 346677888999999999999999999984
Q ss_pred CCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 041816 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 322 (396)
..|..+...|.+.|++++|.+.+++.. +..+|..+..+|...|++..|......+ ..+
T Consensus 1222 -----------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1222 -----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred -----------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 368999999999999999999998873 6789999999999999999998876643 345
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT--GRVNHAKELFV 382 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 382 (396)
...+..++..|.+.|.+++|+.+++...... +-....|+-+..+|++- ++..++.++|.
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677799999999999999999998887542 33445666666666653 45555555554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-12 Score=116.14 Aligned_cols=279 Identities=11% Similarity=-0.009 Sum_probs=135.9
Q ss_pred cCCCCccccCCh---hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHHhHHH
Q 041816 76 SSGQGDITAITP---NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-----HYDTVLSLFKRLNSTGLFPDLYTYNI 147 (396)
Q Consensus 76 ~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ 147 (396)
.++..+...|++ ++|+..|++..+. ++..+..+...+...+ ++++|+..|++..+.|. ...+..
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~ 111 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIP 111 (452)
T ss_dssp TCC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHH
Confidence 455556667777 8999999988753 4556677777555554 78899999999988763 235666
Q ss_pred HHHHHHhcCChh---hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 148 LINCFCKMGRVS---HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR----IMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 148 li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|...|...+..+ ++.+.+......| +...+..+...|...+. .+.+..+++..... +...+..+..
T Consensus 112 Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~ 184 (452)
T 3e4b_A 112 LAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELAT 184 (452)
T ss_dssp HHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHH
Confidence 666666655433 3444444444433 23344445555555553 33333333333221 2225556666
Q ss_pred HHHhcC---ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc----CCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 221 GLCRTG---HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE----GFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 221 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
.|...| +.++|++.|++..+.+ +++...+..|...|... +++++|.+.|+... .| +...+..
T Consensus 185 ~~~~~g~~~~~~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 185 VYQKKQQPEQQAELLKQMEAGVSRG-------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHcCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 666666 6666666666666655 34444445555555443 56666666666655 22 4444455
Q ss_pred HHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 294 LIHG-F--CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG-----KMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 294 li~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+... + ...+++++|...|++..+.| +...+..|...|. .| +.++|.+.|++.. . -+...+..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg 325 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLG 325 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHH
Confidence 5444 2 34556666666666666544 4444555555554 33 5666666665555 2 2444455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 366 DGFCL----TGRVNHAKELFVSMESMG 388 (396)
Q Consensus 366 ~~~~~----~g~~~~A~~~~~~m~~~g 388 (396)
..|.. ..++++|..+|++..+.|
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 44443 225566666665555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-11 Score=109.58 Aligned_cols=274 Identities=10% Similarity=-0.011 Sum_probs=150.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----HHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY----TYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD----AVAF 180 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 180 (396)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+.... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445556667788888888887776643222221 3455666677778888888777776642110 11 2335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAF----GCK--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........+.......
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777778888888777776543 211 2 2345566777777788888888887776654433221111222
Q ss_pred hhHHHHH-HHHhccC----CHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---H
Q 041816 254 VTYTTII-DGLCKEG----FVDKAKELFLQMKDKNINPDVVTY--NSLIHGFCYANDWNEANCLLIEMMDQGVQPD---V 323 (396)
Q Consensus 254 ~~~~~li-~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~ 323 (396)
......+ ....+.. .++++.++. ...+..+..... ...+..+...|++++|...+.+.......+. .
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH---hccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 2111111 1111111 122333322 222221111111 1233446677888888887777664321111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 324 VTFNVIMDELCKNGKMDEASRLLELMILR----GVNPNT-STFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 324 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 24556677777778888888777766542 222222 2555566677777888888877776653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=123.43 Aligned_cols=169 Identities=12% Similarity=0.051 Sum_probs=150.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (396)
.|.+..+|+.|..++.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.... +...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34578899999999999999999999999998864 235788999999999999999999999999987644 7889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH
Q 041816 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 262 (396)
+..+|.+.|++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhH
Confidence 9999999999999999999999875 4468899999999999999999999999999875 5678899999999
Q ss_pred HhccCCHHHHHHHHHHHhh
Q 041816 263 LCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~ 281 (396)
+...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999888753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-12 Score=111.72 Aligned_cols=299 Identities=8% Similarity=-0.057 Sum_probs=205.2
Q ss_pred ccCChhHHHHHHHHHHhcCC---CCCCHhhHHHHHHHH--HhcCChhHHH---------HHHHHHHhCCCCCCH----Hh
Q 041816 83 TAITPNEAFCIFDYMLNMRP---SPPPLTSFNLLFGCL--AKTKHYDTVL---------SLFKRLNSTGLFPDL----YT 144 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~~~~~~~~~p~~----~~ 144 (396)
..++.++|..+++.+.+... ...++..|-.++..- .-.+.+..+. +.++.+.......+. ..
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~ 103 (378)
T 3q15_A 24 RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS 103 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHH
Confidence 45679999999998755321 113344444444331 1123333333 666665432111111 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-C-ccHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCF-TP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GC-K-PNVI 213 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~-~-~~~~ 213 (396)
+......+...|++++|+..+++..+... .+ ...++..+...|...|+++.|...+++..+. +. . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 23344556789999999999999986421 11 3567888999999999999999999987653 11 1 1256
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCCCCh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNINPDV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~ 288 (396)
+++.+...|...|++++|...+++........+. ......++..+..+|...|++++|.+.|++..+ .... ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HH
Confidence 7888999999999999999999988764210000 111245788899999999999999999999876 4333 36
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQG----VQPDVVTFNVIMDELCKNGK---MDEASRLLELMILRGVNP-NTST 360 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~~ 360 (396)
.++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...+++. +..+ ....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHH
Confidence 788899999999999999999999988642 12223456667777778888 77777777663 2222 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 361 FSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67888999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=98.42 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.... +...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 4556777888888899999999888887654 456778888888999999999999999988776433 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHc
Confidence 888888999999999999999888753 446778888888999999999999999998876 345678888899999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 041816 372 GRVNHAKELFVSMESM 387 (396)
Q Consensus 372 g~~~~A~~~~~~m~~~ 387 (396)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-11 Score=98.04 Aligned_cols=166 Identities=17% Similarity=0.047 Sum_probs=132.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4567777788888899999999988887653 34677788888888888999999998888887643 367788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHc
Confidence 888899999999888887764 4467778888888888899999999888888764 45677888888888888
Q ss_pred CCHHHHHHHHHHHhhC
Q 041816 267 GFVDKAKELFLQMKDK 282 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~ 282 (396)
|++++|.+.+++..+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8888888888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-12 Score=120.36 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=149.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
+...|+.+...+.+.|++++|++.|++.++.... +..++..+..+|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999987644 78899999999999999999999999999875 346889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
+|...|++++|++.|++..+.. +.+...|+.+..+|.+.|++++|++.|++..+.... +...|..+...+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 9999999999999999999875 567889999999999999999999999999887544 67889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMD 316 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~ 316 (396)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-11 Score=109.85 Aligned_cols=276 Identities=10% Similarity=0.000 Sum_probs=184.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD---TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 161 (396)
+++++|+..|++..+.+. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred cCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 468899999999988553 236777777777655433 4555555555444 345566677777777766655
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CChHHHHHH
Q 041816 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAES---RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT----GHTIVALNL 234 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~ 234 (396)
......+.+.-...+...+..|...|...| +.++|+..|++..+.| +++...+..+...|... ++.++|+.+
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 554333333211223337777788888888 8888888888888877 44555556666666554 688888888
Q ss_pred HHHHHhcCCCCcccccCCHhhHHHHHHH-H--hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-----CHHH
Q 041816 235 FEEMANGNGKFGVVCKPNTVTYTTIIDG-L--CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-----DWNE 306 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~ 306 (396)
|++.. .+ +...+..|... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++
T Consensus 240 ~~~aa-~g---------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 240 LEKIA-PG---------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHG-GG---------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHc-CC---------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88876 43 44556666665 3 45788888888888887776 6667777777776 44 8888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL----TGRVNHAK 378 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 378 (396)
|...|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888888776 3 355666667666665 3488888888888887653 3444555555543 35788888
Q ss_pred HHHHHHHhCCC
Q 041816 379 ELFVSMESMGC 389 (396)
Q Consensus 379 ~~~~~m~~~g~ 389 (396)
.+|+...+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 88887777663
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.2e-12 Score=111.93 Aligned_cols=235 Identities=11% Similarity=-0.051 Sum_probs=177.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC------CCCHHHHH
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCF------TPDAVAFT 181 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 181 (396)
....+...|++++|++.+++..+. +-.+ ...++..+...+...|++++|...+.+.++... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566678899999999999999764 1111 245788899999999999999999999876311 11246788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++........+. .+....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Confidence 8999999999999999999987754 1111 1347888999999999999999999998773100000 13346778
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HhhHHH
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDK----NINPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPD-VVTFNV 328 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 328 (396)
..+...|.+.|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++. +..|+ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 99999999999999999999987653 111122335678888888898 77777777665 22333 446778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 329 IMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-11 Score=100.29 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=156.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.++..+......+...|++++|++.|++..+....++...+..+..++...|++++|+..+++.++..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888899999999999999999999988664367788888999999999999999999999987644 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNV-------ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVT 255 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~ 255 (396)
..|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+.. +. +...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-------SKKWKTDA 155 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-------CHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-------CCcccHHH
Confidence 99999999999999999998864 2344 568888889999999999999999998864 33 4677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
|..+..+|...| ..+++++...+.. +...|..... ...+.+++|...+++..+..
T Consensus 156 ~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 156 LYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 888888876544 4445555554322 3444444433 34567899999999998753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-12 Score=107.73 Aligned_cols=139 Identities=13% Similarity=0.033 Sum_probs=88.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------C-C
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRS------CF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------G-C 208 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g-~ 208 (396)
.++..+...+...|++++|...+++.++. +- +....++..+...|...|++++|...+++..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555555432 11 123445666666777777777777777666543 1 1
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+....++..+...|...|++++|...++++....... +...+....++..+...|...|++++|.+.+++..+
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345677788888888888888888888877641000 000123456788899999999999999999998865
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=107.36 Aligned_cols=234 Identities=13% Similarity=0.047 Sum_probs=160.5
Q ss_pred HhcCChhhHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CccHHHHHHH
Q 041816 153 CKMGRVSHGFVVLGRILRS-------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF------GC-KPNVITYSTL 218 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 218 (396)
...|++++|+..+++.++. ..+....++..+...|...|++++|+..+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666676666666542 22335678889999999999999999999988765 22 2346688999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCc-ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC------CCCC-Chhh
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK------NINP-DVVT 290 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 290 (396)
...|...|++++|...++++........ ...+....++..+...|...|++++|.+.|++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999876510000 001334678889999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-hhHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCCC
Q 041816 291 YNSLIHGFCYANDWNEANCLLIEMMDQ-------GVQPDV-VTFNVIMDELCKNGKMDE------ASRLLELMILRGVNP 356 (396)
Q Consensus 291 ~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~------A~~~~~~m~~~g~~p 356 (396)
+..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.... +...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998853 122332 233333333333333222 2222222111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387 (396)
Q Consensus 357 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 387 (396)
...++..+...|...|++++|.++|++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999998753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=96.42 Aligned_cols=195 Identities=13% Similarity=-0.001 Sum_probs=141.8
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 140 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
.|+..+......+...|++++|+..|++.++...+++...+..+..++...|++++|+..|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677888888888999999999999998887654677777778888889999999999999888764 33677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-------hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC---hh
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-------VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD---VV 289 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~ 289 (396)
.+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 89999999999999999888764 3444 45777778888888888888888888775 333 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.|..+...|... +..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 155 ~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666666666543 334445554432 22333443333 23345678888888888774
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.1e-11 Score=104.91 Aligned_cols=234 Identities=10% Similarity=-0.035 Sum_probs=169.6
Q ss_pred CCccccCChhHHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHhHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMRPSPP----PLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GL-FP-DLYTYNIL 148 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p-~~~~~~~l 148 (396)
..+...|++++|+..|+++.+.....+ ...++..+..++...|++++|+..+++..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345667899999999999986532212 3457888999999999999999999987652 11 11 24567888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCccHHHHHHHH
Q 041816 149 INCFCKMGRVSHGFVVLGRILRS----CFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKPNVITYSTLI 219 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~ll 219 (396)
..+|...|++++|.+.+.+.++. +.. ....++..+..+|...|++++|+..+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988763 111 12457888999999999999999999998762 2233477888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---VDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
..|.+.|++++|...+++........+ .+.....+..+...|...++ +.+|+..+++... .......+..+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 999999999999999999887642211 11223455666677777788 7777777766321 1112335566777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 041816 297 GFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 297 ~~~~~~~~~~a~~~~~~~~~ 316 (396)
.|...|++++|...|++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77778888888877777654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-09 Score=92.56 Aligned_cols=179 Identities=8% Similarity=0.017 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
|+..+++.++.+ .++...+..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444444566666666666666666666555432 1245555666666666666666666666665
Q ss_pred hcCCCCcccccC-----CHhhHHHHHHHHh--c--cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 041816 240 NGNGKFGVVCKP-----NTVTYTTIIDGLC--K--EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310 (396)
Q Consensus 240 ~~~~~~~~~~~~-----~~~~~~~li~~~~--~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 310 (396)
+. .| +..+...|+.++. . .+++.+|..+|+++.+.. |+..+...++.++.+.|++++|...
T Consensus 164 ~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 NA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHH
Confidence 53 24 2334444443322 1 226666666666665432 2322233333356666666666666
Q ss_pred HHHHHHC-----C----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 311 LIEMMDQ-----G----VQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 311 ~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++.+.+. . -+-|..++..+|......|+ +|.++++++.+.
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6654432 0 02234444444444444554 566666666653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-10 Score=98.28 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=150.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 041816 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a 196 (396)
++++|.+.|++. ...|...|++++|.+.|.+..+. |-.+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888877776 33566788888888888877653 2111 256788888899999999999
Q ss_pred HHHHHHHHhc----CCCc-cHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHH
Q 041816 197 AALFTKLKAF----GCKP-NVITYSTLINGLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270 (396)
Q Consensus 197 ~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (396)
+..|++..+. |-.. -..+++.+...|... |++++|+..|++........+. ......++..+...+.+.|+++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHH
Confidence 9888887654 2111 145788899999996 9999999999998775310000 0001356888999999999999
Q ss_pred HHHHHHHHHhhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHH--hc
Q 041816 271 KAKELFLQMKDKNINPDVV------TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV------VTFNVIMDELC--KN 336 (396)
Q Consensus 271 ~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~ 336 (396)
+|+..|++..+........ .|..+..++...|++++|...+++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999998865442221 5677888899999999999999998763 3332 13445566664 45
Q ss_pred CCHHHHHHHHHHHHh
Q 041816 337 GKMDEASRLLELMIL 351 (396)
Q Consensus 337 g~~~~A~~~~~~m~~ 351 (396)
+++++|...|+.+..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 678888888877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-10 Score=97.64 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--C-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKM--G-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 201 (396)
+|.+++.+..+.- ++....| .+ .+. + ++++|...|.+. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4667777765542 2221222 22 232 2 488888888776 446778899999999999
Q ss_pred HHHhc----CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc-CCHHHHHHH
Q 041816 202 KLKAF----GCKPN-VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKEL 275 (396)
Q Consensus 202 ~~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~ 275 (396)
+..+. |.+++ ..+|+.+..+|.+.|++++|+..+++........+. ...-..+++.+..+|... |++++|+..
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 87654 32222 568999999999999999999999988764310000 001145788899999996 999999999
Q ss_pred HHHHhhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCHHHHHH
Q 041816 276 FLQMKDKNINP-D----VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV------VTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 276 ~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~ 344 (396)
|++..+..... + ..++..+...+...|++++|...|+++.+....... ..|..+..++...|++++|..
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987532110 1 356888999999999999999999999986432222 156778888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 041816 345 LLELMILRGVNPNT------STFSTLMDGFC--LTGRVNHAKELFVSMES 386 (396)
Q Consensus 345 ~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 386 (396)
.|++..+. .|+. ..+..++.++. ..+++++|++.|+++..
T Consensus 221 ~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 221 TLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99998863 3332 23455666664 45779999998877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-08 Score=87.11 Aligned_cols=229 Identities=8% Similarity=0.001 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---CCH
Q 041816 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG--RVSHGFVVLGRILRSCFTPDAVAFTSLIKGL----CAE---SRI 193 (396)
Q Consensus 123 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 193 (396)
.++|+++++.++..+. -+...|+.--..+...| ++++++++++.++...+. +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4567777777766441 23445666666666666 777777777777776544 455555544444 444 678
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC---
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI--VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF--- 268 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 268 (396)
++++.+++++.+.. +.+-.+|+.-...+.+.|.++ ++++.++++.+.+ +.|...|+.-.....+.+.
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccccch
Confidence 88888888888765 457788888777778888877 8888888888876 5677888877777777666
Q ss_pred ---HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHH
Q 041816 269 ---VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE-ANCLLIEMMDQG--VQPDVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 269 ---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 342 (396)
++++++.++++....+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+++.|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 88899999988887666 88888888888888877444 445666555432 134667888888889899999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHH
Q 041816 343 SRLLELMILRGVNP-NTSTFST 363 (396)
Q Consensus 343 ~~~~~~m~~~g~~p-~~~~~~~ 363 (396)
.++++.+.+. ..| ....|..
T Consensus 278 ~~~~~~l~~~-~Dpir~~yW~~ 298 (306)
T 3dra_A 278 RTVYDLLKSK-YNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHT-TCGGGHHHHHH
T ss_pred HHHHHHHHhc-cChHHHHHHHH
Confidence 9999998864 233 3444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=112.22 Aligned_cols=174 Identities=8% Similarity=-0.080 Sum_probs=147.3
Q ss_pred cccCChhHHHHHHHHHH--------hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041816 82 ITAITPNEAFCIFDYML--------NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
...|++++|++.+++++ +..+ .+...|..+..++.+.|++++|++.|+++.+.+ +-+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 56789999999999998 5433 577889999999999999999999999998764 336788999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
..|++++|++.|++.++..+. +...+..+..+|.+.|++++ +..|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999988644 67888999999999999999 99999998875 4478899999999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
.|+++.+.. +.+...+..+..++...++
T Consensus 556 ~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 999998764 4456788888888877555
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-09 Score=90.21 Aligned_cols=181 Identities=9% Similarity=0.002 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204 (396)
Q Consensus 126 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 204 (396)
|+..+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777666544 34555666777778888888888888888766653 2366777778888888888888888888887
Q ss_pred hcCCCc-----cHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 041816 205 AFGCKP-----NVITYSTLINGLC--RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277 (396)
Q Consensus 205 ~~g~~~-----~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (396)
+. .| +..+...++.++. ..|.- ...+-|.-..+... ..|+..+-..++.++.+.|++++|.+.++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~-~~q~A~~~f~El~~-----~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKE-TATSNFYYYEELSQ-----TFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCS-TTTHHHHHHHHHHT-----TSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH-----hCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 75 45 3555566666633 34442 34444555544332 23443344445557788888888888888
Q ss_pred HHhhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 278 QMKDKN---------INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 278 ~m~~~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.+.+.. -+-+..++..+|......|+ +|.+++.++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 665421 02256666566555556675 777888888774
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=81.32 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 169 (396)
..+...+...|++++|+++++++.+.+ +.+...+..+...+...|++++|..+++++.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344444444444444444443322 1123333333333333444444444444333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-09 Score=85.99 Aligned_cols=176 Identities=14% Similarity=-0.040 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC----ChHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----HTIVALNLF 235 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 235 (396)
+|++.|.+..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555443 44555555555555566666666666655543 34445555555555 4 566666666
Q ss_pred HHHHhcCCCCcccccCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCC-CChhhHHHHHHHHHh----cCCHHH
Q 041816 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCK----EGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCY----ANDWNE 306 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~~~~~~ 306 (396)
++..+.+ +...+..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++
T Consensus 77 ~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 77 EKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 6655433 34455555555555 55666666666666555421 014555555555555 556666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 041816 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKN-G-----KMDEASRLLELMILRG 353 (396)
Q Consensus 307 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 353 (396)
|...|++..+. ..+...+..|..+|... | +.++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666666654 12333445555555432 2 5666666666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=109.95 Aligned_cols=174 Identities=8% Similarity=-0.091 Sum_probs=145.4
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 118 AKTKHYDTVLSLFKRLN--------STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 118 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|++.+++.++.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999998 432 345677888899999999999999999999987543 78899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.|++++|+..|++..+.. +.+...|..+..+|.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------CchHHHHHHHHHHHHHcCCH
Confidence 999999999999998875 3467888999999999999999 99999999875 56788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 303 (396)
++|.+.|++..+.+.. +...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999998876433 46677777777766554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=81.33 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+...|++++|..+++++.+... .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 33334444444444444444433321 123333333333444444444444444433332 1223333333333344444
Q ss_pred hHHHHHHHHHHH
Q 041816 228 TIVALNLFEEMA 239 (396)
Q Consensus 228 ~~~a~~~~~~~~ 239 (396)
+++|...++++.
T Consensus 85 ~~~A~~~~~~~~ 96 (136)
T 2fo7_A 85 YDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=92.16 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CccHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSLIKGLCAESRIMEAAALFTKLKAFGC--KPNVITYS 216 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~ 216 (396)
...+..+...+.+.|++++|+..|+.+++..+. + ...+..+..+|.+.|++++|+..|++..+... +....++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444444555555555555555555554321 2 44555555556666666666666666555421 11234455
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHhcC
Q 041816 217 TLINGLCR--------TGHTIVALNLFEEMANGN 242 (396)
Q Consensus 217 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~ 242 (396)
.+..++.. .|++++|+..|+++....
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 55555665 677777777777776653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=88.76 Aligned_cols=137 Identities=11% Similarity=0.008 Sum_probs=102.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 296 (396)
.+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+..+. +...|..+..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 130 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGN 130 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 38889999999999999999999875 567889999999999999999999999999887654 6778888888
Q ss_pred HHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 297 GFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 297 ~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
.|...|+ ...+...+..... ..|....+.....++...|++++|...|++.++ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 8766554 3445555555432 223333444456667778999999999999987 467765544443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-08 Score=86.59 Aligned_cols=220 Identities=13% Similarity=0.023 Sum_probs=181.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hhc---C
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK--HYDTVLSLFKRLNSTGLFPDLYTYNILINCF----CKM---G 156 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g 156 (396)
..++|+++++.++...|. ...+|+.-..++...+ ++++++++++.+...+. -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 357899999999998775 8889999999999888 99999999999988653 3556677655555 555 7
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC------h
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM--EAAALFTKLKAFGCKPNVITYSTLINGLCRTGH------T 228 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~------~ 228 (396)
++++++++++.+++.... +..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999999998754 8889988888888889888 9999999999886 4588899888888888877 8
Q ss_pred HHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHH
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK-AKELFLQMKDKN--INPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~ 305 (396)
+++++.++.+.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999876 7789999999998888887444 555666665533 1237788999999999999999
Q ss_pred HHHHHHHHHHHC
Q 041816 306 EANCLLIEMMDQ 317 (396)
Q Consensus 306 ~a~~~~~~~~~~ 317 (396)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999863
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-09 Score=90.76 Aligned_cols=172 Identities=11% Similarity=0.011 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 175 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ..++..+..+|.+.|++++|+..|+++...... .+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----~~~ 87 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----DPR 87 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CTT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----Cch
Confidence 466777788889999999999999999999874 223 678889999999999999999999999986410 012
Q ss_pred CHhhHHHHHHHHhc--------cCCHHHHHHHHHHHhhCCCCCChhhH-----------------HHHHHHHHhcCCHHH
Q 041816 252 NTVTYTTIIDGLCK--------EGFVDKAKELFLQMKDKNINPDVVTY-----------------NSLIHGFCYANDWNE 306 (396)
Q Consensus 252 ~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~~~~~~ 306 (396)
....+..+..++.. .|++++|...|+++.+.... +.... ..+...|...|++++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 24567788888888 99999999999999876433 33333 456778889999999
Q ss_pred HHHHHHHHHHCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 041816 307 ANCLLIEMMDQGVQP--DVVTFNVIMDELCKN----------GKMDEASRLLELMILR 352 (396)
Q Consensus 307 a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 352 (396)
|...|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 999999988753111 234667777777765 8889999999988875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-09 Score=88.35 Aligned_cols=187 Identities=10% Similarity=0.017 Sum_probs=108.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+..+......+...|++++|+..|++..+.. |+. ..|.. ...... ..........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKN--------------SEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcch--------------hhhhHHHHHHHHH
Confidence 3444445556677788888888888776642 332 22222 000000 0011222334677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. |.+..+|..+..+|..
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 7777777788877777777764 3356777777777777788888888887777764 4556677777776655
Q ss_pred cCC--HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 041816 266 EGF--VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326 (396)
Q Consensus 266 ~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 326 (396)
.|+ .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 443 3344444444432 1222223344455556677788888888877764 4665433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-09 Score=85.08 Aligned_cols=178 Identities=11% Similarity=-0.057 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC----CH
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG----FV 269 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~ 269 (396)
.+|++.|++..+.| +...+..+...|...+++++|+.+|++..+.+ +...+..|...|.. + ++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCH
Confidence 35778888888875 77888999999999999999999999998865 57788888888888 7 99
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCCHH
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDELCK----NGKMD 340 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~ 340 (396)
++|.++|++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .++.+
T Consensus 70 ~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 70 PQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999998876 67788888888887 88999999999999987521 126788888889988 88999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 041816 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLT-G-----RVNHAKELFVSMESMGC 389 (396)
Q Consensus 341 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 389 (396)
+|...|++..+. ..+...+..|...|... | +.++|..+|++..+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999986 23555777788887653 3 89999999999988774
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=102.28 Aligned_cols=154 Identities=12% Similarity=-0.043 Sum_probs=121.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
.|++++|++.|+++.+..+ .+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678999999999988655 478899999999999999999999999998865 3367889999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 041816 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT---GHTIVALNLFEEMAN 240 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 240 (396)
.+++.++.... +...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999987643 68899999999999999999999999998875 34678899999999999 999999999999988
Q ss_pred cC
Q 041816 241 GN 242 (396)
Q Consensus 241 ~~ 242 (396)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 76
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-10 Score=85.84 Aligned_cols=146 Identities=10% Similarity=-0.070 Sum_probs=117.7
Q ss_pred CCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 77 SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
+|..+...|++++|+..+.......+ .+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 35556677889999999999876543 356677889999999999999999999998865 337888999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
++++|+..|++.++..+. +..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999987644 788999999999999999876655 58887764 4467788887777777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-08 Score=81.64 Aligned_cols=202 Identities=8% Similarity=-0.062 Sum_probs=112.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--VITYSTL 218 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l 218 (396)
..+..+...+.+.|++++|+..|+++++..+.. ....+..+..+|.+.|++++|+..|+++.+...... ..++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344445555666666666666666666543221 134555566666666666666666666665431110 0123333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 298 (396)
..++...|.. . ...|..+...+...|++++|...|+++.+..+. +...+......-
T Consensus 85 g~~~~~~~~~-----~------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHC-------------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH
T ss_pred HHHHHhhhhh-----h------------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH
Confidence 3333332210 0 011222233344567888899999888876432 222222211100
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCH
Q 041816 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN----TSTFSTLMDGFCLTGRV 374 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~ 374 (396)
.+...+. .....+...|.+.|++++|...|+++++. .|+ ...+..+..+|.+.|+.
T Consensus 141 ----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 141 ----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp ----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCc
Confidence 0011110 11234567788999999999999999886 332 25688888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 041816 375 NHAKELFVSMESMG 388 (396)
Q Consensus 375 ~~A~~~~~~m~~~g 388 (396)
++|.+.++.+...+
T Consensus 201 ~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 201 AQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999988765
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-09 Score=90.35 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=97.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH-HHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY-STLI 219 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~ll 219 (396)
+...+..+...+.+.|++++|...|++.++..+. +...+..+...+.+.|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3444555666666667777777777766665433 55666666666667777777777776665542 232222 2222
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHH
Q 041816 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGF 298 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~ 298 (396)
..+...++.++|...+++..... +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 23455566666666666666654 4556666666666666677777776666666543321 244566666666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 041816 299 CYANDWNEANCLLIEMM 315 (396)
Q Consensus 299 ~~~~~~~~a~~~~~~~~ 315 (396)
...|+.++|...+++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 66666666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-10 Score=85.36 Aligned_cols=146 Identities=10% Similarity=-0.050 Sum_probs=117.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (396)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3445566789999999999886532 123456678899999999999999999999998644 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL-FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
+++|+..|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. |.+..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-------P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-------PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHhCc
Confidence 999999999999875 44688999999999999999876654 58888764 5567788877777776664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=93.82 Aligned_cols=135 Identities=10% Similarity=-0.063 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-----Ch
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-----DV 288 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~ 288 (396)
+|+.+...|...|++++|+..|++........+. ...-..++..+..+|.. |++++|++.|++..+..... ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 3444444455555555555555444332100000 00012344444445544 55555555555443211000 02
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
.++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|...|++..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445555555555555555555554431 11111 1133344444445555555555555554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-09 Score=85.20 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=28.3
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP-DVVTYNSLIHGFCYANDWNEANCLLIEM 314 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 314 (396)
+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 34444444444445555555555554444433221 1234444444444444444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-08 Score=82.31 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=129.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH--HHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-P-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--VAFT 181 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 181 (396)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556777788899999999999999999875321 1 1356788899999999999999999999987543221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+..++...|.- .+ ..|..+...+...|+.++|...|+++.+.. |.+...+.....
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~ 138 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKR 138 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHH
Confidence 444555443321 11 123334455567789999999999999875 333333332211
Q ss_pred HHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcC
Q 041816 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD----VVTFNVIMDELCKNG 337 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 337 (396)
.. .+...+. .....+...|.+.|++++|...|+++++.. |+ ...+..+..+|.+.|
T Consensus 139 l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 139 LV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT
T ss_pred HH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcC
Confidence 10 0111111 112345667788888888888888888652 33 246777888888888
Q ss_pred CHHHHHHHHHHHHhC
Q 041816 338 KMDEASRLLELMILR 352 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~ 352 (396)
+.++|.+.++.+...
T Consensus 199 ~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 199 MNAQAEKVAKIIAAN 213 (225)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhh
Confidence 888888888888775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-07 Score=88.11 Aligned_cols=170 Identities=9% Similarity=-0.001 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC-----
Q 041816 211 NVITYSTLINGLCRTGHTIVAL-NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI----- 284 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----- 284 (396)
+...|...+..+...|+.++|. .+|+..... ++.+...|...+....+.|+++.|.++|+.+.....
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555556677777786 888888765 356666777788888888889889888888765310
Q ss_pred ----CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHH
Q 041816 285 ----NPD------------VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-GKMDEASRLLE 347 (396)
Q Consensus 285 ----~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~ 347 (396)
.|+ ...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 121 2357777777777888888888888887751111233343333333333 44788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 041816 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388 (396)
Q Consensus 348 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 388 (396)
...+. ++-+...|...+......|+.+.|..+|++.....
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 88776 45566667777777777888888888888877653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-09 Score=99.22 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=121.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 199 (396)
.|++++|++.+++..+.. +-+...+..+...+...|++++|.+.+++.++.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987754 235788999999999999999999999999987643 788999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc---CCHHHHHHHH
Q 041816 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GFVDKAKELF 276 (396)
Q Consensus 200 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~ 276 (396)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99998875 4468899999999999999999999999999875 55678899999999999 9999999999
Q ss_pred HHHhhCCCC
Q 041816 277 LQMKDKNIN 285 (396)
Q Consensus 277 ~~m~~~~~~ 285 (396)
++..+.+..
T Consensus 152 ~~al~~~p~ 160 (568)
T 2vsy_A 152 RAAVAQGVG 160 (568)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhcCCc
Confidence 999876543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=85.84 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=122.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCChh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMGRVS 159 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~ 159 (396)
+...|++++|+..|+++++..| .+...+..+..++...|++++|+..++++.... |+...+..+... +...+...
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 3456889999999999988765 478899999999999999999999999987653 344433332222 22333445
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
.|+..+++.++..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 678999999887543 68899999999999999999999999999875322 3568899999999999999999999887
Q ss_pred Hh
Q 041816 239 AN 240 (396)
Q Consensus 239 ~~ 240 (396)
..
T Consensus 171 l~ 172 (176)
T 2r5s_A 171 LY 172 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=87.76 Aligned_cols=178 Identities=9% Similarity=-0.041 Sum_probs=121.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCCh
Q 041816 84 AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRV 158 (396)
Q Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~ 158 (396)
.+++++|...|+.+ ...|...|++++|.+.|.+..+. +-.+ -..+|+.+...|...|++
T Consensus 29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence 45666666666654 44677789999999988887542 1111 134677888888889999
Q ss_pred hhHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHhcCCh
Q 041816 159 SHGFVVLGRILRSCF---TP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----CKP-NVITYSTLINGLCRTGHT 228 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~~-~~~~~~~ll~~~~~~g~~ 228 (396)
++|+..|++.++... .+ -..+++.+...|.. |++++|+..|++..+.. ... ...++..+...|.+.|++
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 999999888765311 11 24567778888888 99999998888876541 110 145677888888888999
Q ss_pred HHHHHHHHHHHhcCCCCcccccCC-HhhHHHHHHHHhccCCHHHHHHHHHHHh
Q 041816 229 IVALNLFEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
++|+..|++........+ ..+. ...+..++.++...|++++|...|++..
T Consensus 172 ~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998888888776421000 0111 2255666677777788888888888877
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-09 Score=88.86 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.... |+...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~ 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRY 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHH
Confidence 34444445555555555555555555555442 2244455555555555555555555555544432 22222
Q ss_pred HHH-HHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHH
Q 041816 256 YTT-IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDEL 333 (396)
Q Consensus 256 ~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~ 333 (396)
... ....+...++.++|.+.+++....... +...+..+...+...|++++|...+.++.+.... .+...+..++..+
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 111 112233444444455555554443322 4444455555555555555555555555443211 0123444444444
Q ss_pred HhcCCHHHHHHHHHH
Q 041816 334 CKNGKMDEASRLLEL 348 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~ 348 (396)
...|+.++|...+++
T Consensus 266 ~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 266 AALGTGDALASXYRR 280 (287)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HHcCCCCcHHHHHHH
Confidence 444554444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-07 Score=80.77 Aligned_cols=221 Identities=9% Similarity=0.013 Sum_probs=150.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-S-RIMEAA 197 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 197 (396)
+..++|+++++++...+. -+..+|+.--..+...| .+++++++++.++...++ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567777777766542 24455666666666666 477777777777776544 666777666666665 5 677888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC-
Q 041816 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTI--------VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF- 268 (396)
Q Consensus 198 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 268 (396)
.+++++.+.. +.|-.+|+.-...+.+.|..+ ++++.++++.+.. +-|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcccc
Confidence 8888887764 446777776666666655555 8999999999876 6788999999888888876
Q ss_pred ------HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----
Q 041816 269 ------VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW--------------------NEANCLLIEMMDQG---- 318 (396)
Q Consensus 269 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 318 (396)
++++++.++++....+. |...|+.+-..+.+.|.. ........++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68899999988887655 778888777766666653 12222222222211
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 319 -VQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 319 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
-.+....+..+++.|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1245667777888888888888888888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-07 Score=79.97 Aligned_cols=220 Identities=10% Similarity=0.037 Sum_probs=172.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChhhHH
Q 041816 86 TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-G-RVSHGF 162 (396)
Q Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~ 162 (396)
..++|+++++.++...|. +..+|+.--.++...| .+++++++++.+..... -+..+|+.-...+... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 357899999999998775 8889999888888888 59999999999998763 3777888887777777 7 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-------
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIM--------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGH------- 227 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~------- 227 (396)
++++.+++.... |..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|..+|+.....+.+.+.
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 999999987644 7888887666666666555 8999999999876 4588899999888888886
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH--------------------HHHHHHHHHHhhCC----
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV--------------------DKAKELFLQMKDKN---- 283 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~---- 283 (396)
++++++.++++.... +-|...|+.+-..+.+.|.. ....+...++...+
T Consensus 224 ~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 688999999988875 67888898877777766653 23333333333322
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 284 -INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 284 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..++...+..++..|...|+.++|.++++.+.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1357788899999999999999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-07 Score=77.96 Aligned_cols=165 Identities=7% Similarity=-0.035 Sum_probs=121.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH----hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT----VTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD---- 287 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---- 287 (396)
..+..+...|++++|..++++...... ..++. ..+..+...+...+++++|+..|++....... ++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 346678888999999999998877531 12221 13345677777888999999999998874322 22
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMD----Q-GVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN 357 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 357 (396)
..+|+.+...|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 23688899999999999999999999874 1 11222 237788899999999999999999887753 22222
Q ss_pred -HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 041816 358 -TSTFSTLMDGFCLTGR-VNHAKELFVSMES 386 (396)
Q Consensus 358 -~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 386 (396)
...|..+..+|.+.|+ +++|.+.|++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6788889999999994 6999998888754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-07 Score=89.89 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVL-SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
.+..+|++++..-+ .....|-..+..+...|+.++|. ++|++.... .+.+...|...+....+.|++++|.++|+.
T Consensus 327 Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556666666543 36666777777677777777775 777777653 233455556666666677777777777777
Q ss_pred HHhcCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHhc
Q 041816 168 ILRSCF---------TP------------DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 168 ~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~ 225 (396)
+++... .| ...+|...++...+.|+.+.|.++|.+..+. + ......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 765310 12 1235666666666677777777777777654 2 11222333222222333
Q ss_pred -CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcC
Q 041816 226 -GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYAN 302 (396)
Q Consensus 226 -g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~ 302 (396)
++.+.|..+|+...+.. +.+...|...+......|+.+.|..+|+........+ ....|...+..-.+.|
T Consensus 483 ~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 34677777777776652 4455566666666666777777777777776553311 2345666666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMD 331 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 331 (396)
+.+.+..+.+++.+. .|+......+++
T Consensus 556 ~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp CSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 777777777777664 244333333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=85.48 Aligned_cols=194 Identities=8% Similarity=-0.037 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 34455556666666666666666666666543 2355666666666666666666666666666553 445566
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
+..+..+|...|++++|...|++..+.+.. +...+...+....+ ..++. -+..........+......+.. + .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-H
Confidence 666666666666777766666665543211 11111111111111 01111 1111222223333333333322 2 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 041816 336 NGKMDEASRLLELMILRGVNPNT-STFSTLMDGFCLT-GRVNHAKELFVSMES 386 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 386 (396)
.|+.++|.+.+++..+. .|+. .....+...+.+. +.+++|.++|++..+
T Consensus 148 ~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777777777766653 4443 3333333334443 567777777777654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=76.79 Aligned_cols=135 Identities=11% Similarity=-0.104 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|...|++.. .++...+..+...|...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555566666666666666553 3456666677777777777777777777766653 3356667777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCc--------c-cccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 225 TGHTIVALNLFEEMANGNGKFG--------V-VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
.|++++|+..|++..+...... . ..+.....+..+..+|.+.|++++|.+.|+...+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7777777777777766431100 0 0112337788899999999999999999999987653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=76.70 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
..+..+...+...|++++|...|++.. .++..+|..+...|...|++++|+..+++..... +.+...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHH
Confidence 345567778889999999999998874 5688899999999999999999999999998875 56778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINP---------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 318 (396)
.+..+|...|++++|.+.|++..+..... ....+..+..++...|++++|...++++.+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998754321 12678888899999999999999999998754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-07 Score=75.83 Aligned_cols=167 Identities=7% Similarity=-0.058 Sum_probs=79.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC---CC--hhhH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN---PD--VVTY 291 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~--~~~~ 291 (396)
..+..+...|++++|.+.+++..+....... .......+..+...+...|++++|...+++..+.... +. ..+|
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443210000 0000112223444455555666666666555432111 11 2355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMD---Q-GVQP--DVVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTST 360 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 360 (396)
+.+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5566666666666666666665542 1 1011 1135555666666666666666666655432 1111 1445
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHH
Q 041816 361 FSTLMDGFCLTGRVNHA-KELFVSM 384 (396)
Q Consensus 361 ~~~li~~~~~~g~~~~A-~~~~~~m 384 (396)
|..+...|...|++++| ...+++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55666666666666666 5545543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-08 Score=77.80 Aligned_cols=126 Identities=11% Similarity=0.124 Sum_probs=104.0
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC-FCKMG 156 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g 156 (396)
+..+...|++++|+..++..+...+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..+ +...|
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS 93 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC
Confidence 3557788999999999999988765 478899999999999999999999999998754 2367778888888 77899
Q ss_pred Ch--hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 157 RV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 157 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
++ ++|...++..++..+. +...+..+...|...|++++|...|+++.+..
T Consensus 94 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 98 9999999999987643 67888899999999999999999999998874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-08 Score=83.59 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=122.7
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHH
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPL----TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PD----LYTYNILINC 151 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~ 151 (396)
+...|++++|..+++...+..+..++. ..+..+...+...+++++|+..+++....... ++ ..+++.+...
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 164 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI 164 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 456789999999999998865543342 23445677777888999999999999874322 23 2368899999
Q ss_pred HHhcCChhhHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRS-----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLIN 220 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~ 220 (396)
|...|++++|+..++++++. +..+ ...++..+...|.+.|++++|...+++..+. +..+ -..+|..+..
T Consensus 165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999841 1111 2347888999999999999999999987653 2112 2678899999
Q ss_pred HHHhcCC-hHHHHHHHHHHHh
Q 041816 221 GLCRTGH-TIVALNLFEEMAN 240 (396)
Q Consensus 221 ~~~~~g~-~~~a~~~~~~~~~ 240 (396)
+|.+.|+ .++|.+.+++...
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHH
Confidence 9999995 5999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-07 Score=72.84 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..... +.+...+..+.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a 88 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHH
Confidence 333334444444444444444443332 1233344444444444444444444444444332 22333444444
Q ss_pred HHHhccCCHHHHHHHHHHHhh
Q 041816 261 DGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.++...|++++|.+.|++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-07 Score=72.43 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|...+.+.++... .+..++..+...+...|++++|...+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 34444444455555555555555544432 244455555555555555555555555555543 2344555555555666
Q ss_pred cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH--HHHHHhccCCHHHHHHHHHHH
Q 041816 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT--IIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m 279 (396)
.|++++|...++++.... +.+...+.. ++..+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555543 223333322 222244555556655555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=69.96 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
......+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 33334444444444444444444433211 33344444444444444444444444443332 12333344444444444
Q ss_pred CChHHHHHHHHHHHh
Q 041816 226 GHTIVALNLFEEMAN 240 (396)
Q Consensus 226 g~~~~a~~~~~~~~~ 240 (396)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-08 Score=80.50 Aligned_cols=188 Identities=7% Similarity=-0.074 Sum_probs=136.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCCH-------------
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLL-------FGCLAKTKHYDTVLSLFKRLNSTGLFPDL------------- 142 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------------- 142 (396)
..+++..|.+.|.++....|. ....|+.+ ...+...++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 468999999999999998775 77889888 5666666666666666655443 22221
Q ss_pred ---------HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--
Q 041816 143 ---------YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN-- 211 (396)
Q Consensus 143 ---------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-- 211 (396)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 123346677888899999999998887654 333355666678888999999999998665432 111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
...+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3467778888999999999999999887533 213 33466777778888899999999999888764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-07 Score=69.05 Aligned_cols=113 Identities=11% Similarity=0.000 Sum_probs=96.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.....+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.... +...|..+.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg 88 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 356788899999999999999999999998765 347888999999999999999999999999988644 788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
.+|...|++++|++.|++..+.. +-+...+..+..
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 99999999999999999999874 335555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-07 Score=77.94 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=124.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----HhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCC--
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-----YTYNILINCFCKMGRVSHGFVVLGRILRSCF---TPD-- 176 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~-- 176 (396)
...+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|+..+.+.++... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445566777888999999999999988775322111 2234456667788999999999999886422 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
..+++.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|+..+++........+. ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-HH
Confidence 558899999999999999999999988732 1111 1258889999999999999999999988754210000 01
Q ss_pred CCHhhHHHHHHHHhccCCHHHH-HHHHHHHh
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKA-KELFLQMK 280 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 280 (396)
.-..+|..+..+|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1256778888888999999988 67677654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=89.82 Aligned_cols=152 Identities=15% Similarity=0.045 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHhHHHHHH
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD--------------LYTYNILIN 150 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~ 150 (396)
+++++|+..|+......+ .+...|..+...+.+.|++++|+..|++..+...... ...|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445667666666554332 3667889999999999999999999999987542211 478999999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 230 (396)
++.+.|++++|+..+++.++..+. +...+..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 78899999999999999999999999999875 4467889999999999999998
Q ss_pred H-HHHHHHHHh
Q 041816 231 A-LNLFEEMAN 240 (396)
Q Consensus 231 a-~~~~~~~~~ 240 (396)
| ..+++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 8 446666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=84.12 Aligned_cols=195 Identities=10% Similarity=-0.003 Sum_probs=126.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++... .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 456778888888899999999999999988754 23677888888899999999999999999888753 3678888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNV-ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
.+|...|++++|...|++..+.. |+. ..+...+....+ ...+... ....... .+.+......+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~------~~~~~~i~~~l~~l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEERR------IHQESELHSYLTRL- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTC------CCCCCHHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHH------HhhhHHHHHHHHHH-
Confidence 99999999999999998877652 211 011111111111 1111222 2222222 24444444444332
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEMMD 316 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~ 316 (396)
..|++++|.+.++...+.... +......+...+.+. +.+++|..+|.++.+
T Consensus 147 -~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 268888888888877765321 333334443344444 567888888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.9e-08 Score=76.95 Aligned_cols=158 Identities=9% Similarity=-0.061 Sum_probs=117.9
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcC
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----TGLF-PDLYTYNILINCFCKMG 156 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g 156 (396)
+..|++++|.++++.+.. .+. ....++..+...+...|++++|+..+++..+ .+.. ....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 567899999996666644 222 4677899999999999999999999998865 2211 23456788888999999
Q ss_pred ChhhHHHHHHHHHhc----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhc
Q 041816 157 RVSHGFVVLGRILRS----CFT--PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRT 225 (396)
Q Consensus 157 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~ 225 (396)
++++|...+.+..+. +.. .....+..+...+...|++++|...+++..+. +... -..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999988764 212 12456788889999999999999999987643 2111 134467888899999
Q ss_pred CChHHHHHHHHHHHhc
Q 041816 226 GHTIVALNLFEEMANG 241 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~ 241 (396)
|++++|...+++....
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-07 Score=67.68 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
+..+...+...|++++|.+.++++.+... .+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33333344444444444444444433321 123333333444444444444444444433322 1223333333333444
Q ss_pred cCChHHHHHHHHHHH
Q 041816 225 TGHTIVALNLFEEMA 239 (396)
Q Consensus 225 ~g~~~~a~~~~~~~~ 239 (396)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.7e-08 Score=77.02 Aligned_cols=161 Identities=12% Similarity=-0.069 Sum_probs=89.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (396)
..|++++|.++++.+... ......++..+...+...|++++|...+++........+. .+....++..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcCC
Confidence 346666666644333321 1124555666666666666666666666665542110000 12234456666667777777
Q ss_pred HHHHHHHHHHHhhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC--HhhHHHHHHHHHhcC
Q 041816 269 VDKAKELFLQMKDK----NINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ---GVQPD--VVTFNVIMDELCKNG 337 (396)
Q Consensus 269 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g 337 (396)
+++|.+.+++.... +..+ ....+..+...+...|++++|...+++..+. .-.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665432 1111 2334666677777777777777777776532 00111 234567777788888
Q ss_pred CHHHHHHHHHHHHh
Q 041816 338 KMDEASRLLELMIL 351 (396)
Q Consensus 338 ~~~~A~~~~~~m~~ 351 (396)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-07 Score=68.57 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=98.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHH
Q 041816 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183 (396)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (396)
+.+...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 3567788889999999999999999999998764 33678888899999999999999999999988753 378888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
..++.+.|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988764 234566666766666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-07 Score=66.41 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=97.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
....|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|..+++++.+... .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 36788899999999999999999999998754 34677888999999999999999999999998753 47888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 225 (396)
.+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 9999999999999999998874 34566666666555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-07 Score=68.20 Aligned_cols=120 Identities=7% Similarity=-0.064 Sum_probs=101.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 139 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
+.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34566788899999999999999999999998753 378889999999999999999999999998875 4468889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
..++...|++++|...+++..... +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhc
Confidence 999999999999999999998864 445566777776666554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.77 E-value=8.3e-06 Score=75.08 Aligned_cols=285 Identities=11% Similarity=-0.011 Sum_probs=161.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCC-CCHHhHHHHHHHHH----hcCC
Q 041816 85 ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNST-GLF-PDLYTYNILINCFC----KMGR 157 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-p~~~~~~~li~~~~----~~g~ 157 (396)
++++.+..+|++.+..- |++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 67999999999998843 589999999888877763 45677888887653 432 35667777776543 3467
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA-------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 224 (396)
.+.+..+|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88899999999874322112233322221111 12233344444444321000133456555554332
Q ss_pred cC--C-----hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH------
Q 041816 225 TG--H-----TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY------ 291 (396)
Q Consensus 225 ~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~------ 291 (396)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|+..... + .+...|
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh
Confidence 21 1 234677888888764 566788888888888999999999999988766 2 222222
Q ss_pred ----------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-
Q 041816 292 ----------------------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN- 336 (396)
Q Consensus 292 ----------------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 336 (396)
...+....+.++.+.|..+|..+ +.. ..+...|...+..-...
T Consensus 256 ~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 256 MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 11122222345566677777766 211 12233333222221222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 337 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
++.+.|..+|+...+. .+-+...+...++...+.|+.+.|..+|+++
T Consensus 334 ~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2577777777776664 2223444444555555556666666555553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-07 Score=67.78 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=8.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 041816 148 LINCFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~ 169 (396)
+...+...|++++|...+++..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333333334444443333333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=71.28 Aligned_cols=98 Identities=18% Similarity=0.003 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..... |.+...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHHH
Confidence 3344455555555555555555555555543 2345555555555555555555555555555543 3344555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
..+..+|.+.|++++|.+.|+...+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-07 Score=73.43 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=60.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCCh--HHH
Q 041816 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING-LCRTGHT--IVA 231 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~g~~--~~a 231 (396)
.|++++|...++..++... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555555555554432 244555555555555555555555555555442 2244445555555 4455555 555
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...++++.... +.+...+..+..+|...|++++|...|++..+.
T Consensus 101 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555543 334455555555555555555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-06 Score=70.38 Aligned_cols=220 Identities=11% Similarity=-0.016 Sum_probs=142.2
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 118 AKTKHYD-TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 118 ~~~~~~~-~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
.+.|.+. +|+++++.+...+. -+..+|+.--..+...+. +++++.+++.++...++ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455554 78999999987652 244556655444444333 57788888888877644 77888877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 187 LCAES--RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH-TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 187 ~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
+.+.| .+++++.+++++.+.. +.|-.+|+.-...+...|. .+++++.++.+.+.. +-|..+|+.....+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~N~SAW~~R~~ll 189 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHH
Confidence 77777 4888888888888875 4578888888878888887 488888888888875 56777887776665
Q ss_pred hcc--------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCC
Q 041816 264 CKE--------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-----------NDWNEANCLLIEMMDQG 318 (396)
Q Consensus 264 ~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~~ 318 (396)
.+. +.++++++.+++.....+. |...|+.+-..+.+. +.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 554 3466777777777765544 666666554444444 2355666666666653
Q ss_pred CCCCHhhHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 041816 319 VQPDVVTFNVIMD-----ELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 319 ~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 351 (396)
.||. .|+.+.. .....|..+++...+.++.+
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3443 2322111 11134455555556665555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-05 Score=69.61 Aligned_cols=216 Identities=10% Similarity=-0.018 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.++|+++++.++...|. +..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-...+...|
T Consensus 46 s~eaL~~t~~~L~~nP~--~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 45899999999998765 77888887666655444 688999999998765 347788988888888888
Q ss_pred C--hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------
Q 041816 157 R--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR-IMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-------- 225 (396)
Q Consensus 157 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-------- 225 (396)
+ +++++.+++.+.+..+. |..+|+.-.-.+...|. ++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccc
Confidence 4 89999999999998754 88899888888888888 699999999999876 45888888877776665
Q ss_pred ------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc-----------CCHHHHHHHHHHHhhCCCCCCh
Q 041816 226 ------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-----------GFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
+.++++++.++...... |-|..+|+.+-..+.+. +.++++++.++++.+.. ||.
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 45788999999998875 67888888776666665 45789999999998764 333
Q ss_pred hhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 041816 289 VTYNSLIH-----GFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 289 ~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.|..+.. +....+..+++...+.++++.
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3432222 222456777888888888874
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-07 Score=76.24 Aligned_cols=126 Identities=10% Similarity=-0.088 Sum_probs=61.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCC--hhhHHHHH
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD--VVTYNSLI 295 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li 295 (396)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHH
Confidence 4444555555555555555544432 222244444445555555555555555333221 110 12445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPD--VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555566666666666665553222132 223444455555666666666666666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-07 Score=67.22 Aligned_cols=121 Identities=11% Similarity=0.061 Sum_probs=100.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++|...+....+... .+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence 466788889999999999999999999998754 34677888899999999999999999999988753 3677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 228 (396)
..+...|++++|...|++..+.. +.+...+..+..++...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999888764 34667777777777777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-07 Score=80.20 Aligned_cols=151 Identities=11% Similarity=-0.014 Sum_probs=114.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKG 186 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 186 (396)
+++++|++.++...+.. +-+...+..+...+.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44556665554433221 11456778888889999999999999999988754322 5788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~ 277 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRI 277 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999888875 4467888888889999999999999999888865 55677888888888888
Q ss_pred CCHHHH-HHHHHHHh
Q 041816 267 GFVDKA-KELFLQMK 280 (396)
Q Consensus 267 g~~~~a-~~~~~~m~ 280 (396)
|+.++| ..+|+.|.
T Consensus 278 ~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 278 RRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877 44565554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-07 Score=69.93 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhH
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
...+..+...+.+.|++++|+..|+++.... |.+...|..+..+|...|++++|+..|++.....+. +...|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~ 107 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPV 107 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHH
Confidence 4455556666666666666666666666654 445566666666666666666666666666655433 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 292 NSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 292 ~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
..+..+|...|++++|...|++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=72.11 Aligned_cols=93 Identities=12% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 294 (396)
+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|+..|++....... +...+..+
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l 95 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 3333444444444444444444444332 223334444444444444444444444444333221 33333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 041816 295 IHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 295 i~~~~~~~~~~~a~~~~~~~~ 315 (396)
..+|...|++++|...|+...
T Consensus 96 g~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=72.10 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..... +.+...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~ 92 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------IXEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHH
Confidence 4444555555566666666666666655543 2345555556666666666666666666665543 3345555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..+..+|...|++++|.+.|+...+
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-08 Score=79.10 Aligned_cols=88 Identities=16% Similarity=-0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
.++..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..... +.+...+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 160 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHH
Confidence 445555555555566666666555555542 2344555555555555666666666665555543 23444444
Q ss_pred HHHHHHhccCCHHHHH
Q 041816 258 TIIDGLCKEGFVDKAK 273 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~ 273 (396)
.+..++...++.+++.
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5544444444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-08 Score=77.73 Aligned_cols=130 Identities=15% Similarity=0.057 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-c--------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK-P--------------NVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|+..|++..+.... + ...+|..+..+|...|++++|+..+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555666666667777777777666654211 0 1256777777888888888888888887776
Q ss_pred CCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHH
Q 041816 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN-CLLIEM 314 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~ 314 (396)
. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+...+...++.+++. ..+..+
T Consensus 118 ~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 118 D-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp S-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC---------
T ss_pred C-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456677777777788888888888888777665432 4556666666666555555554 333333
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-05 Score=70.59 Aligned_cols=208 Identities=9% Similarity=0.023 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..+|++++... +.+...|...+..+.+.|+++.|..+|++.... +.+...|.. |....+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 455677666643 335667777777777788888888888887776 333333322 2222222222 222222
Q ss_pred cCCCCc------ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHH
Q 041816 241 GNGKFG------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-ANDWNEANCLLIE 313 (396)
Q Consensus 241 ~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~ 313 (396)
...... .........|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 000112355677777777788899999999999 32 12233444332222222 3369999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
..+.. +-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98753 2234556667888888999999999999973 2578888888877888999999999988874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-06 Score=64.55 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l 78 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444444432 2334444444
Q ss_pred HHHHhccCCHHHHHHHHHHHh
Q 041816 260 IDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~ 280 (396)
..++...|++++|.+.|++..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.9e-07 Score=80.29 Aligned_cols=198 Identities=10% Similarity=-0.046 Sum_probs=141.5
Q ss_pred cccCChhHHHHHHHHHHhcCCCCCCH---------------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHH--
Q 041816 82 ITAITPNEAFCIFDYMLNMRPSPPPL---------------TSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLY-- 143 (396)
Q Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~-- 143 (396)
...|++++|++.|..+++..+...+. .++..+...|.+.|++++|.+.+..+... +..++..
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 45678999999999998876553332 23778899999999999999999887542 1112222
Q ss_pred --hHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCcc
Q 041816 144 --TYNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF----G-CKPN 211 (396)
Q Consensus 144 --~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g-~~~~ 211 (396)
+.+.+-..+...|+.+.|..++...... +..+ -..++..+...|...|++++|..+++++... + -+..
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2233333444568899999998887642 2222 3567888999999999999999999987653 1 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC--HhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
..++..++..|...|++++|..++++......... .++. ...+..+...+...|++++|...|.+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56788999999999999999999998765321100 1111 34567777888899999999988887653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-06 Score=60.87 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (396)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344444555555555555555555554432 123444444444444555555555555544443221 344444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 041816 188 CAESRIMEAAALFTKLKA 205 (396)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~ 205 (396)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-06 Score=61.33 Aligned_cols=91 Identities=12% Similarity=-0.036 Sum_probs=33.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 226 (396)
.+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHh
Confidence 333333344444444444444333321 123333333333333344444444433333322 112333333333333333
Q ss_pred ChHHHHHHHHHHH
Q 041816 227 HTIVALNLFEEMA 239 (396)
Q Consensus 227 ~~~~a~~~~~~~~ 239 (396)
++++|...+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=63.82 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=79.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34567777788888889999999888887754 336778888888888889999999888888887533 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~ 206 (396)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888889999998888888765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=66.12 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
.+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..... +.+...+..+..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~ 94 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHHHH
Confidence 33344444444444444444444432 2234444444444444444444444444444432 233334444444
Q ss_pred HHhccCCHHHHHHHHHHHh
Q 041816 262 GLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~ 280 (396)
+|...|++++|.+.|+...
T Consensus 95 ~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=65.65 Aligned_cols=98 Identities=12% Similarity=-0.011 Sum_probs=51.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|+..++..+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34444445555555555555555555555433 124444555555555555555555555555554322 3444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 186 GLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~ 205 (396)
+|...|++++|...|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-06 Score=62.91 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=92.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 180 (396)
.+...+..+...+...|++++|++.|++..+.. |+ ...+..+..++...|++++|+..+++..+.... +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 577788889999999999999999999998754 55 677888888999999999999999999887533 67888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 889999999999999999999988764 234555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=62.20 Aligned_cols=93 Identities=14% Similarity=-0.034 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC--CHhhHHH
Q 041816 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTT 258 (396)
Q Consensus 181 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 258 (396)
..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~ 81 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNKDVWAA 81 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchHHHHHH
Confidence 333444444444444444444444332 1233344444444444444444444444444432 22 3344444
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHhh
Q 041816 259 IIDGLCKE-GFVDKAKELFLQMKD 281 (396)
Q Consensus 259 li~~~~~~-g~~~~a~~~~~~m~~ 281 (396)
+..++... |++++|.+.++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 44444444 444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.7e-06 Score=74.95 Aligned_cols=166 Identities=5% Similarity=-0.112 Sum_probs=71.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcc
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTPD----------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPN 211 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 211 (396)
.+.+.+.|++++|++.|..+++...... ...+..+...|...|++++|.+++..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445566777777777777666432211 1124445555555555555555555543320 0111
Q ss_pred HHH----HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCC
Q 041816 212 VIT----YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NIN 285 (396)
Q Consensus 212 ~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~ 285 (396)
..+ .+.+...+...|+.+.|..+++.........+. ...-..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 111222222344555555555555444211100 0001223444444555555555555555444321 100
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 286 --P-DVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 286 --p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+ ...+|..++..|...|++++|..++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 12234444444555555555555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=63.03 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVAFT 181 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 181 (396)
..+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++.++.... .+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777777777777777776643 234566677777777777777777777776653211 11 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHH
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 215 (396)
.+..++...|++++|++.|++..+. .|+..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6667777777777777777776654 3444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-06 Score=65.87 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..... +.+...|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~ 84 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 33344444444444444444444444332 1233444444444444444444444444444432 223444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHhh
Q 041816 259 IIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+..+|...|++++|.+.|++..+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=63.48 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC--CC---
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--PD--- 287 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~--- 287 (396)
.++..+...+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|++.+++..+.... ++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345555566666666666666666665543 344555666666666666666666666655432111 00
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 288 -VVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 288 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
..+|..+..++...|++++|+..|++.++
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12334444444445555555555544443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=64.47 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=85.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CC----HHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PD----AVA 179 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~ 179 (396)
....|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...++...+.... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 34567778888888899999999999887754 346777888888888899999999998888775321 12 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 221 (396)
+..+..++...|++++|...|++..+.. |+...+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 8888888889999999999998888764 455555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-06 Score=65.34 Aligned_cols=98 Identities=9% Similarity=-0.045 Sum_probs=47.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..++.+.|++++|+..+++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34445555555555555555555555554432 123444444555555555555555555555444322 3444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 041816 186 GLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~ 205 (396)
+|...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 45555555555555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=60.12 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP--NTSTFSTLM 365 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li 365 (396)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHH
Confidence 3344555555555555666665555555432 223445555566666666666666666666554 122 355566666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 041816 366 DGFCLT-GRVNHAKELFVSMESM 387 (396)
Q Consensus 366 ~~~~~~-g~~~~A~~~~~~m~~~ 387 (396)
..+... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-06 Score=63.03 Aligned_cols=99 Identities=15% Similarity=0.036 Sum_probs=51.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
.+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++..++.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 344555555555555555555555555554432 123444555555555555555555555555554322 444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 041816 185 KGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~ 205 (396)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-06 Score=61.93 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 217 (396)
...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3344444444444445555554444444432 22 3334444444444444444444444444332 123334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 041816 218 LINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+..++...|++++|...|++...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=5e-06 Score=61.87 Aligned_cols=96 Identities=11% Similarity=-0.047 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...+++..... +.+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 80 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH 80 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhHHHH
Confidence 4444444444455555555555555444432 2234444445555555555555555555544432 2334444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHh
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
..+..+|...|++++|...|+...
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445555555555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.9e-07 Score=81.33 Aligned_cols=124 Identities=12% Similarity=0.036 Sum_probs=100.8
Q ss_pred hccCCCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 041816 74 CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 153 (396)
....+..+...|++++|++.|+++++..+. +...|..+..++.+.|++++|++.+++..+.. +.+...|..+..+|.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445677888999999999999999997654 78899999999999999999999999999875 346788999999999
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--LCAESRIMEAAALFT 201 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 201 (396)
..|++++|++.+++.++.... +...+..+..+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987533 34455555555 888899999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=63.58 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-06 Score=61.50 Aligned_cols=91 Identities=9% Similarity=-0.004 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+...+.+.|++++|+..+++.++..+. +...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444445555555555554444322 44444444444555555555555555444432 1234444444444445555
Q ss_pred hHHHHHHHHHHHh
Q 041816 228 TIVALNLFEEMAN 240 (396)
Q Consensus 228 ~~~a~~~~~~~~~ 240 (396)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-05 Score=75.02 Aligned_cols=173 Identities=10% Similarity=-0.017 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.++|++.++.++...|. +..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 57899999999998775 88889988888888777 9999999999988763 47788998888889999
Q ss_pred --ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------
Q 041816 157 --RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-------- 225 (396)
Q Consensus 157 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-------- 225 (396)
+++++++.++++.+.... +..+|+...-.+.+.| .++++++.++++.+.. +.|..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999998754 8899998888888888 8999999999999876 45888898888777763
Q ss_pred ------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH
Q 041816 226 ------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271 (396)
Q Consensus 226 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (396)
+.++++++.++++.... +.+...|+.+-..+.+.+..++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-------CCCccHHHHHHHHHhcCCCccc
Confidence 45689999999998875 6678899998888888777444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=65.11 Aligned_cols=134 Identities=8% Similarity=-0.002 Sum_probs=103.7
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQ----GVQP-D 322 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 322 (396)
..++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457788888999999999999999987653111 11 247888899999999999999999997753 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP-NTSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
...+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999988753 2111 245677888899999999999999998775
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.3e-06 Score=64.58 Aligned_cols=135 Identities=14% Similarity=-0.009 Sum_probs=101.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---C--CC
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCF---T--PD 176 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~--~~ 176 (396)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+... . ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888888999999999999887653111 11 13677788889999999999999998775311 1 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888899999999999999887653 211 12456778888999999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-06 Score=60.91 Aligned_cols=93 Identities=13% Similarity=-0.041 Sum_probs=43.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 041816 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336 (396)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 336 (396)
..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++..+.. +-+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444444445555555555554443322 34444444444555555555555555544432 11233444444555555
Q ss_pred CCHHHHHHHHHHHHh
Q 041816 337 GKMDEASRLLELMIL 351 (396)
Q Consensus 337 g~~~~A~~~~~~m~~ 351 (396)
|++++|...+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.7e-05 Score=71.94 Aligned_cols=176 Identities=12% Similarity=-0.024 Sum_probs=143.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 120 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
....++|++.++++...+. -+..+|+.--.++...|+ ++++++.++.+++..++ +..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445688999999988652 256678777777777777 89999999999998755 88899988888889
Q ss_pred cC--CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 190 ES--RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG-HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 190 ~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
.| ++++++..++++.+.. +.+..+|+.....+.+.| ..+++++.++++.+.. +-|..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHHhh
Confidence 99 7899999999999986 458899999988899999 8999999999998876 67888898887776653
Q ss_pred --------------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 041816 267 --------------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306 (396)
Q Consensus 267 --------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 306 (396)
+.++++++.+++.....+. |...|+.+-..+.+.+..++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999998877655 77888888888877776444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-05 Score=73.98 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=96.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
...|..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34556666667777777777777777766432211 5788888889999999999999999988875
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH-HHHHHh
Q 041816 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE-LFLQMK 280 (396)
Q Consensus 208 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 280 (396)
+.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888889999999999999999999998865 4566788888888888888877663 444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=73.59 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=97.8
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--------------HHHHHHHHHH
Q 041816 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN--------------VITYSTLING 221 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------~~~~~~ll~~ 221 (396)
+++++|.+.++...+..+ -....+..+...|.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345556555544333211 1456788889999999999999999999887532211 4667777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
|.+.|++++|+..++++.... +.+...|..+..+|...|++++|...|++..+.... +...+..+..++...
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKA 398 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 777888888888777777764 456677777777777777777777777777765433 455666666666666
Q ss_pred CCHHHHHH
Q 041816 302 NDWNEANC 309 (396)
Q Consensus 302 ~~~~~a~~ 309 (396)
++++++.+
T Consensus 399 ~~~~~a~~ 406 (457)
T 1kt0_A 399 KEHNERDR 406 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-05 Score=57.05 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---HHHHHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL---YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVAFTSL 183 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 183 (396)
+..+...+...|++++|++.|+++.+... .+. ..+..+..++...|++++|...++.+.+..+. + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 34456667777888888888888776431 122 36667777788888888888888888776433 3 5667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFG 207 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g 207 (396)
..++...|++++|...|+++.+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 778888888888888888877653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=78.08 Aligned_cols=120 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 229 (396)
..+.+.|++++|++.+++.++.... +..++..+..+|.+.|++++|+..+++..+.. +.+..+|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445556666666666666655322 45566666666666666666666666666553 234555666666666666666
Q ss_pred HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHH--HhccCCHHHHHHHHHH
Q 041816 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG--LCKEGFVDKAKELFLQ 278 (396)
Q Consensus 230 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~ 278 (396)
+|++.+++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666655543 2233344444333 5555556666555554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-05 Score=56.44 Aligned_cols=96 Identities=15% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDA---VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN---VITYSTL 218 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l 218 (396)
+..+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|++..+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 445667788999999999999999986533 33 577888999999999999999999998874 223 6778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC
Q 041816 219 INGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 219 l~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
..++...|++++|...|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999998864
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=70.96 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFG---------------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
.+..+...+.+.|++++|+..|++..+.- .+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 34555566666666666666666655410 01123334444444444444444444444444432
Q ss_pred CCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
+.+...|..+..+|...|++++|.+.|++..+
T Consensus 304 ------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 ------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334444444444444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.4e-06 Score=61.09 Aligned_cols=86 Identities=10% Similarity=-0.028 Sum_probs=43.4
Q ss_pred cCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHH
Q 041816 155 MGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232 (396)
Q Consensus 155 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 232 (396)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|+..|++..+.. +-+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555442 11234445555555555555555555555555543 224455555555555566666666
Q ss_pred HHHHHHHhc
Q 041816 233 NLFEEMANG 241 (396)
Q Consensus 233 ~~~~~~~~~ 241 (396)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-05 Score=70.67 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh----------------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILR----------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 208 (396)
+..+...+.+.|++++|+..|++.++ .. +.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 45555566666666666666666654 11 2246678888888889999999999999888764
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHH
Q 041816 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274 (396)
Q Consensus 209 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (396)
+.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888889999999999999999888764 4466677777777776666665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-06 Score=61.69 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC
Q 041816 190 ESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 267 (396)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|+..+++..+.. +.+...+..+..++.+.|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 467777777887777653 23345667777777777888888888888777764 455667777777777778
Q ss_pred CHHHHHHHHHHHhhC
Q 041816 268 FVDKAKELFLQMKDK 282 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~ 282 (396)
++++|...|++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888887777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-05 Score=59.87 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------c-----ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKF------G-----VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+......+.+.|++++|+..|++........ . ...+.+...|..+..+|.+.|++++|+..++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34445555555555555555555554430000 0 000223456777777777778888887777777765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 283 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
+.. +...|..+..+|...|++++|...|++..+.
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 433 5667777777777777777777777777764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-05 Score=59.82 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|+.....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455555556666666666666666655543 344555556666666666666666666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.8e-06 Score=70.83 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHH
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 293 (396)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 45556666666666666666666665543 344556666666666666666666666665543221 2233333
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHH
Q 041816 294 LIHG-FCYANDWNEANCLLIEMM 315 (396)
Q Consensus 294 li~~-~~~~~~~~~a~~~~~~~~ 315 (396)
+... ....+..+++..+|..|.
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322 122333444444554444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=70.32 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHH
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHH
Confidence 67788888889999999999999888764 3467888889999999999999999999887754 334555555
Q ss_pred HHHH-HhccCCHHHHHHHHHHHhhC
Q 041816 259 IIDG-LCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 259 li~~-~~~~g~~~~a~~~~~~m~~~ 282 (396)
+... ....+..+.+.++|..|...
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5554 33456677777888887654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.9e-05 Score=56.33 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCccHHHH----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF-------GCKPNVITY----STLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------g~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|..+..++.+.|++++|+..+++..+. . +-+...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677777777777777777777776664 3 2345667 77888888888888888888887664
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.8e-05 Score=56.36 Aligned_cols=96 Identities=15% Similarity=-0.018 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCK-----------PNVITYSTLINGLCRTGHTIVALNLFEEMANG------ 241 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 241 (396)
.+......+.+.|++++|+..|++..+.... .+...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555556666666666666666654211 02338999999999999999999999999886
Q ss_pred -CCCCcccccCCHhhH----HHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 242 -NGKFGVVCKPNTVTY----TTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 242 -~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
. +.+...| .....++...|++++|+..|++..+
T Consensus 93 ~~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 3456678 8889999999999999999998865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00022 Score=53.10 Aligned_cols=110 Identities=10% Similarity=-0.081 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----AN 302 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~ 302 (396)
+.++|+++|++..+.+ .++. . |...|...+.+++|.+.|++..+.| +...+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-------~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-------EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-------CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 4556666666666554 1222 2 5555555566666666666666554 55556666666655 56
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRG 353 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 353 (396)
++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666666666553 34455555555655 566666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00018 Score=53.61 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=33.6
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---
Q 041816 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR--- 224 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--- 224 (396)
|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33333344444433 344444444444444332 23333334444443
Q ss_pred -cCChHHHHHHHHHHHh
Q 041816 225 -TGHTIVALNLFEEMAN 240 (396)
Q Consensus 225 -~g~~~~a~~~~~~~~~ 240 (396)
.++.++|..+|++..+
T Consensus 109 ~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 3444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=71.45 Aligned_cols=131 Identities=8% Similarity=-0.125 Sum_probs=94.2
Q ss_pred HHHhcCChhhHHHHHHHHHhc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCccHHHHH
Q 041816 151 CFCKMGRVSHGFVVLGRILRS-----CF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----G--CKPNVITYS 216 (396)
Q Consensus 151 ~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~ 216 (396)
.+...|++++|+.++++.++. |. +....+++.|...|...|++++|+.++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999888753 21 113567899999999999999999999887643 3 122356789
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGK-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.|...|...|++++|+.++++....... +|...+....+.+.+..++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643211 1111122234556666777778888888888888765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-05 Score=54.67 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 041816 88 NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
++|+..|+..++..+ .+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 457778888877655 477788888888888899999999888887754 23566778888888888888888888888
Q ss_pred HHhc
Q 041816 168 ILRS 171 (396)
Q Consensus 168 ~~~~ 171 (396)
.++.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.8e-05 Score=69.59 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=97.0
Q ss_pred HHHhcCChhHHHHHHHHHHhC--C-CCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC--CCCHHHHH
Q 041816 116 CLAKTKHYDTVLSLFKRLNST--G-LFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF--TPDAVAFT 181 (396)
Q Consensus 116 ~~~~~~~~~~a~~~~~~~~~~--~-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~ 181 (396)
.+..+|++++|+.++++.++. . +.++ ..+++.|...|...|++++|..++++.++. |. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 1 1122 457889999999999999999999988652 32 12356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCC--ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAF-----GCK--PNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.|...|...|++++|+.++++..+. |.. ....+.+.+..++...+.+++|+.+|..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 421 22445677788888999999999999988763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=57.36 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543 224555555555555566666666665555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=52.56 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
|++.|++.++..+ .+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444332 234444555555555555555555555554442 22344455555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0001 Score=52.12 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+...+..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666667777777777777777766654 445666666677777777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0003 Score=47.58 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++....
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444444555555555555555544432 223444555555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00028 Score=47.70 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|.+.|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555555566666666665555543 334445555555555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=54.51 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-----------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 261 (396)
+++|+..|++..+.. +.+..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 567888888877764 33567777788888776 4899999999999985 466666555444
Q ss_pred H
Q 041816 262 G 262 (396)
Q Consensus 262 ~ 262 (396)
.
T Consensus 133 ~ 133 (158)
T 1zu2_A 133 M 133 (158)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=54.12 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=40.1
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD----------TVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
+.+.+++|++.++..++..|. +...|+.+..++...++++ +|+..|++..+... -+..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 345577777777777776654 6777777777777766654 44444444444321 1333444444444
Q ss_pred Hhc
Q 041816 153 CKM 155 (396)
Q Consensus 153 ~~~ 155 (396)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=48.38 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 177 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
...+..+...|...|++++|+..|++..+.. +.+..+|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555555555544442 1233444455555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0031 Score=61.93 Aligned_cols=98 Identities=6% Similarity=0.006 Sum_probs=54.3
Q ss_pred HhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 118 AKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196 (396)
Q Consensus 118 ~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 196 (396)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 43111 112222556666666676666665442110 112334456777777
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 197 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7665432 255667777777777777777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00075 Score=46.86 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 210 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
.+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777888888888888888888888888765 45566788888888888888888888887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.019 Score=56.33 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=88.7
Q ss_pred HhcCChhhHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHH
Q 041816 153 CKMGRVSHGFV-VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231 (396)
Q Consensus 153 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a 231 (396)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+.-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35577777765 44111 112223666777777788887776553211 112334567888888
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 311 (396)
+++.+. ..+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.
T Consensus 672 ~~~~~~------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 672 RDLLTD------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTT------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 777543 23567788888888888888888888887653 334444455566666655555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 312 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
+.....| -++....+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555443 2233344455556666666665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0062 Score=52.74 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 041816 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 362 (396)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 467777777777777788888888888888765 77777777788888888888888888888874 66666543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.017 Score=49.98 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=97.5
Q ss_pred CCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHh---cC-Ch-hhHH---HHHHHHHh
Q 041816 105 PPLTSFNLLFGCLAK--T---KHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCK---MG-RV-SHGF---VVLGRILR 170 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g-~~-~~a~---~~~~~~~~ 170 (396)
.+...|...+.+... . .+..+|+.+|++..+.. |+ ...|..+.-++.- .+ .. .... ..+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 577888888776543 2 34578999999998854 54 3444443333321 11 11 1111 12222111
Q ss_pred -cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccc
Q 041816 171 -SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249 (396)
Q Consensus 171 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 249 (396)
...+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~------- 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR------- 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 1225578888888887888899999999999999985 788888888999999999999999999998854
Q ss_pred cCCHhhHHH
Q 041816 250 KPNTVTYTT 258 (396)
Q Consensus 250 ~~~~~~~~~ 258 (396)
|...+|..
T Consensus 341 -P~~~t~~~ 348 (372)
T 3ly7_A 341 -PGANTLYW 348 (372)
T ss_dssp -CSHHHHHH
T ss_pred -CCcChHHH
Confidence 66666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0027 Score=57.00 Aligned_cols=85 Identities=7% Similarity=-0.119 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHH
Q 041816 301 ANDWNEANCLLIEMMDQ---GVQPD----VVTFNVIMDELCKNGKMDEASRLLELMILR-----G-VNP-NTSTFSTLMD 366 (396)
Q Consensus 301 ~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li~ 366 (396)
.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+- | -.| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666777666665531 11122 245666777777777777777776666532 1 112 2345666667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 041816 367 GFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 367 ~~~~~g~~~~A~~~~~~m~ 385 (396)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777766654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0041 Score=55.90 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=70.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC-CcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhh-----CCCC-C-Chh
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGK-FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-----KNIN-P-DVV 289 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p-~~~ 289 (396)
.+..+.+.|++++|+.++++..+.... ++...+....+++.+..+|...|++++|+.++++..+ .|.. | ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355577889999999999998875422 2222222346788889999999999999999888753 1211 1 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+++.|...|...|++++|..+++++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577788888888888888888877653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=57.52 Aligned_cols=88 Identities=6% Similarity=-0.179 Sum_probs=69.2
Q ss_pred hcCChhhHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-Cc-cHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRS---CFTP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----GC-KP-NVITYSTLI 219 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ll 219 (396)
..|++++|+.++++.++. -+.| ...+++.|...|...|++++|+.++++..+. |. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999988762 1122 3567899999999999999999999987643 31 12 356789999
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 041816 220 NGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 220 ~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..|...|++++|+.++++..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0024 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVI-TYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444455555555555554432 22334 4555555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0044 Score=55.73 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=73.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCccHH
Q 041816 148 LINCFCKMGRVSHGFVVLGRILRSC---FTP----DAVAFTSLIKGLCAESRIMEAAALFTKLKAF-----G--CKPNVI 213 (396)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~ 213 (396)
.+..+.+.|++++|+.++++.++.. +.+ ...+++.+...|...|++++|+.++++..+. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999998642 112 3567899999999999999999999987643 2 112356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788999999999999999999988765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.18 Score=41.90 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCcccccC--CHhhHHHHHHH
Q 041816 193 IMEAAALFTKLKAFGCKPN---VITYSTLINGLCRT-----GHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDG 262 (396)
Q Consensus 193 ~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~ 262 (396)
...|...+++..+.. |+ ...|..+...|.+. |+.++|.+.|++..+.. | +..++......
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence 566777777777763 44 56788888888884 88888888888888854 4 36777777888
Q ss_pred Hhcc-CCHHHHHHHHHHHhhCCCC--CChhhHHHH
Q 041816 263 LCKE-GFVDKAKELFLQMKDKNIN--PDVVTYNSL 294 (396)
Q Consensus 263 ~~~~-g~~~~a~~~~~~m~~~~~~--p~~~~~~~l 294 (396)
++.. |+.+++.+.+++....... |+....+.+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8774 8888888888888877665 554444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.052 Score=41.51 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=21.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 203 (396)
+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555554444433 13444555555555555555555555444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.015 Score=39.48 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 211 NVITYSTLINGLCRTGH---TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
+...+..+..++...++ .++|..++++....+ +.++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444433332 455555555555543 334445555555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.095 Score=37.76 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
.|.+++..++..+.... .+..-||.++--....-+-+-..++++.+-... |. ..+|+.
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF---------Di----------s~C~Nl 77 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---------DL----------DKCQNL 77 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---------CG----------GGCSCT
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc---------Cc----------HhhhcH
Confidence 46666666666666553 244445555544444455555555555544332 11 223444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
......+-.+-. +.......++.....|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.++
T Consensus 78 KrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 78 KSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444433321 444555566666677777777777766543 23566666667777777777777777777777
Q ss_pred HhCCCC
Q 041816 350 ILRGVN 355 (396)
Q Consensus 350 ~~~g~~ 355 (396)
.++|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 776653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=39.82 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=46.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-hHHHHHHHHhccCCHHHHHHHHHHHhhCCC
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-TYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 284 (396)
....+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|.+.|++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4556777888888888888888764 44566 788888888888888888888888877643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.021 Score=42.52 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHH
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQGVQP--DVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 342 (396)
....+.+-|.+....+. ++..+...+..++++.+ +.+++..++++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666554 47777777777788777 5668888888887754 24 244555566677888888888
Q ss_pred HHHHHHHHhCCCCCCH
Q 041816 343 SRLLELMILRGVNPNT 358 (396)
Q Consensus 343 ~~~~~~m~~~g~~p~~ 358 (396)
++.++.+.+. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888888874 5543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.15 Score=39.00 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=85.2
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 041816 83 TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162 (396)
Q Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 162 (396)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 347789999888876 4678899999999999999999999988653 344555566677777666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 041816 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 239 (396)
.+-+.....| -++.....+.-.|+++++.++|.+..+ .|.. .-.....|..+.|.++.+++.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 5555554444 134445556667999999998865432 1111 112233566777888877664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.14 Score=36.93 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=98.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
+.-.|..++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .|. ..+
T Consensus 17 ~ildG~v~qGveii~k~~~ss---------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C 74 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKC 74 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGC
T ss_pred HHHhhhHHHHHHHHHHHcCCC---------CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hhh
Confidence 344678888888888877643 4555555555555555666666666665442 122 234
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
|+.......+-.+ ..+.......++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++
T Consensus 75 ~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4444444443332 134456677788889999999999999996543 5788999999999999999999999999
Q ss_pred HHHHhCCCC
Q 041816 382 VSMESMGCK 390 (396)
Q Consensus 382 ~~m~~~g~~ 390 (396)
.+.-+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999974
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.038 Score=37.50 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 287 DVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
+...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55566666666654443 577777777777643 234556666667777777777777777777764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.033 Score=46.29 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC
Q 041816 143 YTYNILINCFCKM-----GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE-SRIMEAAALFTKLKAFG 207 (396)
Q Consensus 143 ~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g 207 (396)
..|..+...|... |+.++|.+.|++.++.++.-+..++......++.. |+.+++.+.+++.....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 3455555555553 56666666666666554322355555555555553 66666666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.048 Score=37.83 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=42.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 172 (396)
+...+..|...+.+.++++.|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455667777777777777777777765421 12244556666667777777777777777666653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.077 Score=36.75 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
+-.+...+.+.|+++.|...|+...+.- -.....++..+..++.+.|+++.|...++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444455555544444433320 112344455555555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.034 Score=41.40 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=28.0
Q ss_pred CHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 141 DLYTYNILINCFCKMG---RVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
+..+.-.+..++++.+ ++++++.+++.+.+.. +.-....+-.+.-+|.+.|++++|.++++.+.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4444444444444444 3334444444444432 1012233333444444555555555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.27 Score=36.27 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=80.8
Q ss_pred CCCCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHH------HHHhcCChhhHHHHHHHHH
Q 041816 103 SPPPLTSFNLLFGCLAKTKHY------DTVLSLFKRLNSTGLFPDLY-TYNILIN------CFCKMGRVSHGFVVLGRIL 169 (396)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~a~~~~~~~~ 169 (396)
.|.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 346888888888888888888 8888999988763 455432 1111111 1234589999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 041816 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219 (396)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 219 (396)
+..-.- ..+|......=.+.|+++.|.+++.+....+..| .......+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 763333 7788888888889999999999999999887554 33344333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.79 E-value=1.2 Score=43.76 Aligned_cols=276 Identities=15% Similarity=0.035 Sum_probs=149.0
Q ss_pred CCccccCChhHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C-----CCHHhHHHHHH
Q 041816 79 QGDITAITPNEAFCIFDYMLNMR-PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--F-----PDLYTYNILIN 150 (396)
Q Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~li~ 150 (396)
.|.+..|+.++++.+++..+..+ ...+.+..=..+.-+.+..|..+++.+++.......- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45667778888888887765422 1112223333344445666666677777766554210 0 00111122222
Q ss_pred HHHhcCC-hhhHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 041816 151 CFCKMGR-VSHGFVVLGRILRSCFTPDA--VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227 (396)
Q Consensus 151 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 227 (396)
+++-.|. -+++.+.+..++...- ... ..--.|...+...|+-+....++..+.+.. .-+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 2333343 2455666666655321 111 111233344556788888888887776532 1122222333344557889
Q ss_pred hHHHHHHHHHHHhcCCCCcccccCCHhhH--HHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 228 TIVALNLFEEMANGNGKFGVVCKPNTVTY--TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+
T Consensus 540 ~e~~~~li~~L~~~~-------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 540 QELADDLITKMLASD-------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGGHHHHHHHHHCS-------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 998888888887643 2222222 234557888899888888998887642 223333333333445567777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM-DEASRLLELMILRGVNPNTSTFSTLMDGF 368 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 368 (396)
.+.+++..+.+.+ .|...--..+.-+....|.. .++..++..+.. .+|..+-...+.++
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7777776666543 45555444455555545443 577888888874 34554444444343
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.22 Score=36.69 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=76.7
Q ss_pred cCCHhhHHHHHHHHhccCCH------HHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 041816 250 KPNTVTYTTIIDGLCKEGFV------DKAKELFLQMKDKNINPDVV-TYNSLIH------GFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~~~~~~a~~~~~~~~~ 316 (396)
+.|..+|-..+....+.|+. +...++|++.... ++|+.. .|...|. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888887777888 8888888887653 344321 1211111 11344788999999998876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 041816 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367 (396)
Q Consensus 317 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 367 (396)
.+-.- ...|......-.+.|++..|.+++...+..+.+ +...+...+.-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 53333 666777777777889999999999998887544 44445544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.15 Score=36.43 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 287 DVVTYNSLIHGFCYANDWNE---ANCLLIEMMDQGVQP--DVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 287 ~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..+-..+..++.+..+... ++.++.++.+.+ .| .....-.|.-++.+.|++++|.+.++.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444444444444333 555555544432 12 112222334445555555555555555554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.88 Score=40.94 Aligned_cols=262 Identities=12% Similarity=0.048 Sum_probs=148.7
Q ss_pred CChhHHHHHHHHHHhc----CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHhHHHHHHHH----Hhc
Q 041816 85 ITPNEAFCIFDYMLNM----RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS-TGLFPDLYTYNILINCF----CKM 155 (396)
Q Consensus 85 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~----~~~ 155 (396)
+++++|++.+-.+.+. ...+........++..|.+.++++...+.+..+.. +|..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 5677887776655542 22224566788899999999999999888776643 3433222 23333333 223
Q ss_pred CChhhH--HHHHHHHHh--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCcc---HHHHHHHHHHH
Q 041816 156 GRVSHG--FVVLGRILR--SC-FTP---DAVAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPN---VITYSTLINGL 222 (396)
Q Consensus 156 g~~~~a--~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~---~~~~~~ll~~~ 222 (396)
...+.. ..+.+.+.. .| +-. .......|...|...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 112211111 11 111 2334567888999999999999999998643 22111 45677788899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcccccCC--HhhHHHHHHHHhccCCHHHHHHHHHHHhhC-CCCCChhhHHH----HH
Q 041816 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNS----LI 295 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~----li 295 (396)
...+++..|..++.++...... ...+|+ ...+..++..+...+++.+|.+.|.++... ...-|...+.. ++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~--~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v 265 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFK--NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIV 265 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcc--cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 9999999999999987431100 001222 235667778888899999999888887542 11113222221 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 041816 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN--GKMDEASRLLELMI 350 (396)
Q Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~ 350 (396)
....-.+....-..+.........-++...|..++.+|... .+++.+.+.|+...
T Consensus 266 ~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 266 YFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 11122222222223333333222235667788888888764 45666666555433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.23 Score=47.55 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=82.0
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCCC-H----
Q 041816 257 TTIIDGLCKEGF-VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-DWNEANCLLIEMMDQ------GVQPD-V---- 323 (396)
Q Consensus 257 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~------~~~p~-~---- 323 (396)
..++..+...+. .+.|..+|+++......-+......++..+...+ +--+|..++.+..+. ...+. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 5889999999988643222222233333333333 223455555554421 11111 1
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 324 ------VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384 (396)
Q Consensus 324 ------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 384 (396)
.....=.+.|...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345577889999999999999986 4556899999999999999999999999887
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.29 E-value=8e-06 Score=72.14 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.++.||-.+-.+|...+.+.-|.-.--.+.- ...-...++..|-..|.+++-+.+++.-... -......|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 3566777777777777776655444333321 1112334555666777777777777665532 133455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 041816 331 DELCKNGKMDEASRLLELMILR-GVNP------NTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~A~ 378 (396)
-.|++- ++++.++.++..-.+ +++- ....|..++-.|.+-.++|.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 666664 344444433322221 1111 2344566666666666666553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.29 Score=34.96 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHH---HHHHHHHHhhCCCC-CChhhHHHHHHHHHhc
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLQMKDKNIN-PDVVTYNSLIHGFCYA 301 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~ 301 (396)
.....+.+-|......+ .++..+-..+..++++..+... ++.+++++.+.+.+ -.......|.-++.+.
T Consensus 15 ~~l~~~~~~y~~e~~~~-------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccC-------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 34455566666665554 4777888888888888887666 89999998876411 1344566677788999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDV 323 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~ 323 (396)
|++++|.+.++.+.+. .|+.
T Consensus 88 g~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp TCHHHHHHHHHHHHHH--CTTC
T ss_pred hhHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999984 4643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.99 E-value=2 Score=42.23 Aligned_cols=258 Identities=12% Similarity=0.030 Sum_probs=129.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChhhHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 041816 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYT--YNILINCFCKMGRVSHGFVVLGRILRSCF-------TPDAVAFTSLIKGL 187 (396)
Q Consensus 117 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 187 (396)
....|+.++++.+++.....+-..+..+ -..+.-+....|...++.+++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777776665443110112222 22233344555655667776666654321 01111122222222
Q ss_pred --HhcCCHHHHHHHHHHHHhcCCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 188 --CAESRIMEAAALFTKLKAFGCKPNVITYS--TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 188 --~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
.-.++- ++...+..+.... ........ +|...+.-.|+.+....++..+.+.. ..++.-...+.-++
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-------~e~vrR~aalgLGl 534 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-------HGNITRGLAVGLAL 534 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHH
T ss_pred HhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-------cHHHHHHHHHHHHh
Confidence 333443 4444444444321 11111122 23333445677777777777666532 22233333444455
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 041816 264 CKEGFVDKAKELFLQMKDKNINPDVVTY--NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 341 (396)
...|+.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 56788888888888777531 1122111 233456677888877777888877642 2233333333334445677666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 041816 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV-NHAKELFVSMES 386 (396)
Q Consensus 342 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 386 (396)
+.++++.+.+.+ .|....-..+.-+....|.. .++.+.+..+..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777776666543 44444444444455555543 567777777753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.24 Score=43.80 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 041816 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-----RGVNPNTSTFS 362 (396)
Q Consensus 288 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 362 (396)
..+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455666777778888888888887777543 45677888888888888888888888877654 37777766544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=3.7 Score=36.86 Aligned_cols=193 Identities=8% Similarity=0.043 Sum_probs=109.8
Q ss_pred CChhhHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHH----Hhc
Q 041816 156 GRVSHGFVVLGRILRS-----CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLINGL----CRT 225 (396)
Q Consensus 156 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~----~~~ 225 (396)
|+++.|++.+-.+.+. ....+......++..|...|+++...+.+.-+.+. |..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666542 23446777888999999999999888877666543 322222 23333322 223
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccC---CHhhHHHHHHHHhccCCHHHHHHHHHHHhhC--CCCCC---hhhHHHHHHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKP---NTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPD---VVTYNSLIHG 297 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~ 297 (396)
...+.... ...+..........+-. .......|...|...|++.+|.+++.++... +.... ...+...++.
T Consensus 108 ~~~d~~~~-~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTR-ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHH-HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33222111 11111111110000111 0112345677788888888888888887542 22111 2356666777
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 298 FCYANDWNEANCLLIEMMD----QGVQPDV--VTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
|...+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888888888888877642 2222222 3455666667777788777777766654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.73 Score=44.19 Aligned_cols=52 Identities=15% Similarity=0.007 Sum_probs=33.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (396)
.+...|+++.|+.+-++..... |.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445666666666666666643 445666666777777777777666666665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.39 E-value=3.1e-06 Score=74.71 Aligned_cols=225 Identities=12% Similarity=0.110 Sum_probs=160.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
..+.+|..|..+..+.++..+|++.|=+. -|+..|..+|....+.|.+++-+..+....+..- +..+=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 45667999999999888888888765332 3666788999999999999999988877666533 344446789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (396)
-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+. -|.-|...+.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------------N~akLAstLV 181 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLV 181 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------------CCTTTSSSSS
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------------cHHHHHHHHH
Confidence 99999998765544432 3566666778888888888888876665543 3444555667
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 041816 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 344 (396)
+.|++..|.+.-+ +. -+..||-.+-.+|...+++.-|...--.++-. +| -...++..|-..|-+++.+.
T Consensus 182 ~L~~yq~AVdaAr---KA---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 182 HLGEYQAAVDGAR---KA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp SCSGGGSSTTTTT---TC---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHHHHHHHHHH---hc---CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHH
Confidence 7888877765432 22 27889999999999999999887766555532 22 22345667888999999888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 041816 345 LLELMILRGVNPNTSTFSTLMDGFCLT 371 (396)
Q Consensus 345 ~~~~m~~~g~~p~~~~~~~li~~~~~~ 371 (396)
+++.-... -.....+|+-|.-.|++-
T Consensus 251 LlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 251 MLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp THHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 88877643 234667777777666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.87 E-value=3.4 Score=42.24 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=100.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC------------
Q 041816 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN------------ 285 (396)
Q Consensus 218 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------ 285 (396)
++..+.+.+..+.+.++... ++.+....-.+..+|...|++++|.+.|.+... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh-----------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccc
Confidence 44445556666655554432 234455556677889999999999999987531 110
Q ss_pred -----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 286 -----------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV----VTFNVIMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 286 -----------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
.-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+.+.+...|++++|...+-.+.
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 01123677888888999999999888877754222221 257889999999999999999998887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041816 351 LRGVNPNTSTFSTLMDGFCLTGRVNHA 377 (396)
Q Consensus 351 ~~g~~p~~~~~~~li~~~~~~g~~~~A 377 (396)
... --......|+..++..|..+.-
T Consensus 966 d~~--~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 966 TTP--LKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HSS--SCHHHHHHHHHHHHHHCCHHHH
T ss_pred CHH--HHHHHHHHHHHHHHhCCChhhh
Confidence 653 3456777888877777766544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.73 E-value=1.2 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.61 Score=41.14 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-----QGVQPDVVTF 326 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~ 326 (396)
..+...++..+...|++++|...+..+..... .+...|..+|.++...|+..+|++.|+...+ .|+.|...+-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34556677888899999999999999887643 3788999999999999999999999998764 4888876553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.05 E-value=1.7 Score=31.27 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 285 NPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
.|+..+--.+..++.+..+ ..+++.++.++.+.+..-....+-.|.-++.+.|++++|++..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445554444445554443 335566666665543111233344455566666666666666666665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.66 E-value=2.2 Score=30.60 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 365 (396)
+..+-++.+...++.|++......+++|.+.+|+..|.++|+-.+.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555566666666666666666666666666666666654 233334454443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.40 E-value=8 Score=39.51 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----C-------------
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS----C------------- 172 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~------------- 172 (396)
...++..+...+.++.+.++..... .+...--.+..++...|++++|.+.|.+.... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3346666777788777776554432 24444456677788899999999988764210 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 041816 173 -----FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN----VITYSTLINGLCRTGHTIVALNLFEEMANGNG 243 (396)
Q Consensus 173 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 243 (396)
...-..-|..++..+-+.+.++.+.++-....+...+.+ ...|..+.+.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 001124567788888888888888888776665432212 2257888899999999999988888776543
Q ss_pred CCcccccCCHhhHHHHHHHHhccCC------------HHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 041816 244 KFGVVCKPNTVTYTTIIDGLCKEGF------------VDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANC 309 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~ 309 (396)
.-......|+...+..|. .++..+++....+. .+...+.-|..|-.-+...|++.+|-.
T Consensus 969 -------~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 969 -------LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp -------SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 223445555555554444 44444444332211 111112234555555566677665544
Q ss_pred H-HHHHH
Q 041816 310 L-LIEMM 315 (396)
Q Consensus 310 ~-~~~~~ 315 (396)
+ |+.+.
T Consensus 1042 vmYe~~~ 1048 (1139)
T 4fhn_B 1042 IIYEKLS 1048 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=4.9 Score=29.27 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 041816 285 NPDVVTYNSLIHGFCYAND---WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358 (396)
Q Consensus 285 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 358 (396)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|++..+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4566666666666666654 4467777777776432112334445566778888888888888888874 5543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.77 E-value=12 Score=31.66 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=47.1
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA---NDWNEANCLLIEMMDQGVQPDVVTFNV 328 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ 328 (396)
++.....+...|.+.|++.+|...|-. |-.-|...+..++.-+... |...++.-++.+ .
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------a 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------L 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------H
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------H
Confidence 677888888999999999998887641 1111344555555444443 443333222211 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 041816 329 IMDELCKNGKMDEASRLLELMI 350 (396)
Q Consensus 329 l~~~~~~~g~~~~A~~~~~~m~ 350 (396)
+-.|...|+...|..+++...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223455677888887777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.58 E-value=4.2 Score=30.53 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=33.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------HhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041816 113 LFGCLAKTKHYDTVLSLFKRLNSTG-LFPDL-------YTYNILINCFCKMGRVSHGFVVLGRILR 170 (396)
Q Consensus 113 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (396)
-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3445566677777766666543211 11221 2445566667777777777777777643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.80 E-value=5.6 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++..+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.45 E-value=5 Score=35.79 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCccHHH--HH
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCKPNVIT--YS 216 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~--~~ 216 (396)
+...+...|.+.|+++.|.+.+.++... +...-...+-..++.+...+++..+...+.+.... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777778888888877777653 22334566677777777778888877777776432 22222211 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
.-...+...+++..|-..|-+.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11122344677777777776655443
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=85.91 E-value=2.4 Score=31.36 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 124 DTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 124 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
+++.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 447888888877766433 4456777777888888888888888888877666443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.39 E-value=9.9 Score=28.53 Aligned_cols=98 Identities=9% Similarity=0.019 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------
Q 041816 144 TYNILINCFCKMGRVSHGFVVLGRILRSC-FTPD-------AVAFTSLIKGLCAESRIMEAAALFTKLKAFG-------- 207 (396)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-------- 207 (396)
++-.-++.+...|.++.|+-+.+.++... ..++ ..++..+.+++...|++..|...|++..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455677788899999888877765421 1222 2356778889999999999999999853220
Q ss_pred ----------------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 208 ----------------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 208 ----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
...+...---+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1112233345788999999999999999886543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.95 E-value=17 Score=30.92 Aligned_cols=165 Identities=10% Similarity=0.045 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH----HHHHHHhcCCCCCHHHHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV----VLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
.++..-|.+.+++++|++++-.-. ..+.+.|+...|.+ +++-+.+.+.++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 334445677788888888764432 12233344433333 33444455666777666666666
Q ss_pred HHhcCCHH-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHH
Q 041816 187 LCAESRIM-EAAALFTKLK----AFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259 (396)
Q Consensus 187 ~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 259 (396)
+.....-+ .=.++.+++. +.| ..-|......+...|.+.+++.+|...|- . + ..++...|..+
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g------~~~s~~~~a~m 173 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--G------TKESPEVLARM 173 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--S------CTTHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--c------CCchHHHHHHH
Confidence 66554311 1122222222 222 22356677788888999998888887773 1 2 12333555444
Q ss_pred HHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
+--+...+...++ +...-..++ -|.-.++...|..+++...
T Consensus 174 L~ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 174 EYEWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 4433333321111 222222333 3455677777777666555
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.31 E-value=3.7 Score=31.95 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhhHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK--TKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGFV 163 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 163 (396)
+++++..|...... ..|+.....-+...-. .+...++.++|..|...|+-- -+..|......+...|++.+|.+
T Consensus 60 LErc~~~F~~~~rY---kND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 60 MERCLIYIQDMETY---RNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHTTCGGG---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcccccc---cCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444332 2455444333332222 455778899999988776543 34567778888888999999999
Q ss_pred HHHHHHhcCCCCCH
Q 041816 164 VLGRILRSCFTPDA 177 (396)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (396)
+|..-++.+-.|-.
T Consensus 137 Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 137 LLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHTTCBSHH
T ss_pred HHHHHHHcCCccHH
Confidence 99998888777644
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.11 E-value=19 Score=30.69 Aligned_cols=173 Identities=12% Similarity=0.071 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI----MEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
|.++..-|.+.+++++|++++..-.. .+.+.|+. |.+.-+++-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455567888999999987654321 12233443 233344455566677777777777777
Q ss_pred HHHhcCChH-HHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 041816 221 GLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299 (396)
Q Consensus 221 ~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 299 (396)
.+......+ .=..+.+++..-...++....-|......+...|.+.+++.+|..-| +. |-.+....|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHHH
Confidence 766655322 11222222221110000001235677788888999999999988877 22 33333456655555554
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 300 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
..+...++--+ .-..+ -.|...+++..|..+++...+
T Consensus 179 ~~~~~~e~dlf--------------iaRaV-L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDESHTAPLY--------------CARAV-LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCGGGHHHH--------------HHHHH-HHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCccHHHH--------------HHHHH-HHHHHhCCHHHHHHHHHHHHH
Confidence 44433222222 22222 235556788888777666553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.08 E-value=21 Score=31.26 Aligned_cols=233 Identities=10% Similarity=-0.048 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCC-H----HH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPD---LYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPD-A----VA 179 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~-~----~~ 179 (396)
...|...|.+.|+.++..+++...... +..+- ......++..+.... ..+.-.++..+.++..-.-. . ..
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888887766431 11111 223456666665543 23333344444333210001 1 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh
Q 041816 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKP-----NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254 (396)
Q Consensus 180 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 254 (396)
-..++..|...|++.+|.+++.++.+.=-.. -..++..-++.|...++..++...+......... +.+++.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a----i~~~p~ 177 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA----IYCPPK 177 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----SCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc----CCCCHH
Confidence 2367889999999999999998887641111 1445667788899999999999999887653210 113332
Q ss_pred hHH----HHHHHHh-ccCCHHHHHHHHHHHhhC-C-CC-C---ChhhHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCC
Q 041816 255 TYT----TIIDGLC-KEGFVDKAKELFLQMKDK-N-IN-P---DVVTYNSLIHGFCYANDWNEANCLLI-EMMDQGVQPD 322 (396)
Q Consensus 255 ~~~----~li~~~~-~~g~~~~a~~~~~~m~~~-~-~~-p---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~p~ 322 (396)
.-. .-.-.+. ..+++..|...|-+..+. . .. | +...|..+.... .++..+...++. .....-..|.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCcc
Confidence 221 1223455 789999999888776421 1 10 1 122233332222 233223222221 2111112455
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELM 349 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 349 (396)
...+..++.+|. .+++.+...+++..
T Consensus 256 i~~l~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 256 IDAMKSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 555666666554 46676666665554
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=83.83 E-value=3.5 Score=30.99 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=47.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
.|+.....-+...-.. +++.++|..|...|+--. +..|......+...|++.+|.++|..-++.+-.|-..
T Consensus 61 nD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4555444444322222 447778888888776543 4456777778888889999999998888887776544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.36 E-value=7.4 Score=34.69 Aligned_cols=101 Identities=10% Similarity=-0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHh-
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAF--GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV- 254 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 254 (396)
.+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...++++....... ..++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~---~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG---GDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---CCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC---CCHHHHH
Confidence 35678899999999999999999999875 333346778889999999999999999999876532110 112221
Q ss_pred -hHHHHHHHHhccCCHHHHHHHHHHHhh
Q 041816 255 -TYTTIIDGLCKEGFVDKAKELFLQMKD 281 (396)
Q Consensus 255 -~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (396)
....-...+...+++..|...|-+...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111222334567899999998887654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.21 E-value=11 Score=27.19 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 196 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
..+-++.+....+.|++.+..+.+++|.+.+|+..|.++++..+..
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555555555555555555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.79 E-value=11 Score=27.05 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 041816 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171 (396)
Q Consensus 125 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 171 (396)
+++.+++.+.+.+..-....+..+.-++.+.|++++|.+..+.+++.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555544331111223333444455555555555555555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.69 E-value=8.9 Score=25.90 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
.++|..+-+++...+. ..+.+ .-+..+...|+|++|+.+.+.+. .||...|..|.. .+.|..+++...+
T Consensus 23 HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 5666666666655432 12111 12334556677777776665543 466666655543 3556666666666
Q ss_pred HHHHhcC
Q 041816 166 GRILRSC 172 (396)
Q Consensus 166 ~~~~~~~ 172 (396)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.44 E-value=8.6 Score=25.93 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 165 (396)
.++|..+-+++...+. ..+.+ .-+..+...|+|++|+.+.+.+. .||...|..|.. .+.|..+++...+
T Consensus 22 HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 5666666666655432 12111 12334556677777776655443 466666655543 3566666666666
Q ss_pred HHHHhcC
Q 041816 166 GRILRSC 172 (396)
Q Consensus 166 ~~~~~~~ 172 (396)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.18 E-value=9.4 Score=25.80 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 346 (396)
...++|..+-+-+...+. ....--+-+..+.+.|+|++|..+.+.. ..||...|-+|.. .+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345555555555544432 1111111223344556666665544332 2455555544432 3445555555555
Q ss_pred HHHHhC
Q 041816 347 ELMILR 352 (396)
Q Consensus 347 ~~m~~~ 352 (396)
.++..+
T Consensus 93 ~~la~s 98 (116)
T 2p58_C 93 NRLARS 98 (116)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 455444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.64 E-value=9.3 Score=25.77 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 041816 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347 (396)
Q Consensus 268 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 347 (396)
..++|..+-+-+...+. ....--+-+..+.+.|+|++|..+.+.. ..||...|-+|. -.+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45555555555544432 1111111223344556666655544322 245555544432 234555555555555
Q ss_pred HHHhC
Q 041816 348 LMILR 352 (396)
Q Consensus 348 ~m~~~ 352 (396)
++..+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.46 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.34 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.27 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.97 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.08 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.96 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.02 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.89 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.7e-21 Score=168.73 Aligned_cols=297 Identities=15% Similarity=0.059 Sum_probs=249.9
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|++.|+++++..|. ++..+..+..++.+.|++++|++.++++.+.. +-+..+|..+..++.+.|++++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34568899999999999887654 77888889999999999999999999987754 2356788888899999999999
Q ss_pred HHHHHHHHHhcCC-------------------------------------------------------------------
Q 041816 161 GFVVLGRILRSCF------------------------------------------------------------------- 173 (396)
Q Consensus 161 a~~~~~~~~~~~~------------------------------------------------------------------- 173 (396)
|+..+....+...
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 9888877765431
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
+.+...+..+...+...|++++|...+++..+.. +-+..+|..+...+...|++++|...+++..... +.+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 237 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-------PNHA 237 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-------TTCH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-------hhHH
Confidence 1134556667777888999999999999988764 3467889999999999999999999999998875 5677
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 041816 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333 (396)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 333 (396)
..+..+...+.+.|++++|...|++..+.... +..+|..+...+...|++++|...++...... +.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 88889999999999999999999999887544 67889999999999999999999999988753 56778889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 041816 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393 (396)
Q Consensus 334 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 393 (396)
...|++++|.+.|++..+. .+-+..++..+..+|...|++++|.+.|++..+. .|+.
T Consensus 316 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~ 372 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF 372 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 9999999999999999875 2346788999999999999999999999999864 4653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.4e-18 Score=152.01 Aligned_cols=281 Identities=11% Similarity=0.047 Sum_probs=237.3
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC------------------
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF------------------ 139 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 139 (396)
+..+...|++++|+..|+++++..|. +..+|..+..++.+.|++++|++.+....+....
T Consensus 40 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (388)
T d1w3ba_ 40 SSIHFQCRRLDRSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccc
Confidence 34455678999999999999998764 7889999999999999999999998877653311
Q ss_pred -------------------------------------------------CCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 041816 140 -------------------------------------------------PDLYTYNILINCFCKMGRVSHGFVVLGRILR 170 (396)
Q Consensus 140 -------------------------------------------------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 170 (396)
-+...+..+...+...|++++|...++..++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 197 (388)
T d1w3ba_ 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHH
Confidence 1123445556667788999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCccccc
Q 041816 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250 (396)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 250 (396)
..+. +...+..+...+...|++++|...+++....+ +.+...+..+...+.+.|++++|+..|+++.+.. +
T Consensus 198 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p 268 (388)
T d1w3ba_ 198 LDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-------P 268 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-------S
T ss_pred hCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------C
Confidence 7543 67889999999999999999999999998875 4567788889999999999999999999998875 5
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 041816 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330 (396)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 330 (396)
.+..++..+...+...|++++|.+.++....... .+...+..+...+...|++++|...+++..+.. +-+..++..+.
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 346 (388)
T d1w3ba_ 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6678999999999999999999999999887643 377889999999999999999999999998753 23467888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 041816 331 DELCKNGKMDEASRLLELMILRGVNP-NTSTFSTLMDGFCLTGR 373 (396)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 373 (396)
.+|.+.|++++|...|++.++. .| +...|..+..+|.+.||
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999885 45 57889999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.3e-15 Score=128.70 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=133.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 160 (396)
+...|++++|+..|+.+++..|. ++.+|..+..++...|++++|+..|++..+.. +-+...+..+...+...|++++
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 44567888888888888886654 67788888888888888888888888877654 2356677777788888888888
Q ss_pred HHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhc
Q 041816 161 GFVVLGRILRSCFTPD--------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRT 225 (396)
Q Consensus 161 a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~ 225 (396)
|.+.+........... .......+..+...+.+++|...|.+..+... ..+..++..+...+...
T Consensus 106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 8888888776432100 00011111222233445555555555444321 12344555555555566
Q ss_pred CChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 041816 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305 (396)
Q Consensus 226 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 305 (396)
|++++|+..+++..... +.+...|..+..+|...|++++|.+.|++..+.... +...|..+..+|.+.|+++
T Consensus 186 ~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhhhhcccccccccc-------cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence 66666666666555543 334455555555566666666666666555543322 3445555555555556666
Q ss_pred HHHHHHHHHHH
Q 041816 306 EANCLLIEMMD 316 (396)
Q Consensus 306 ~a~~~~~~~~~ 316 (396)
+|+..|++.++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.6e-15 Score=126.04 Aligned_cols=258 Identities=13% Similarity=0.024 Sum_probs=201.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041816 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191 (396)
Q Consensus 112 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (396)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.+.++..+. +...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 45667889999999999999999865 236788999999999999999999999999987644 7888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCc--------------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHH
Q 041816 192 RIMEAAALFTKLKAFGCKP--------------NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257 (396)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~--------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
++++|.+.+++........ +.......+..+...+...+|...+.+...... ...+...+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-----~~~~~~~~~ 176 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-----TSIDPDVQC 176 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-----TSCCHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-----cccccccch
Confidence 9999999999987653110 000111122334455677888888888776542 134567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 041816 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337 (396)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 337 (396)
.+...+...|++++|+..|++....... +...|..+...+...|++++|...++++.+.. +-+...+..+..+|.+.|
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCC
Confidence 8999999999999999999998876544 67889999999999999999999999998753 235678899999999999
Q ss_pred CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 041816 338 KMDEASRLLELMILR----------GVNPNTSTFSTLMDGFCLTGRVNHAK 378 (396)
Q Consensus 338 ~~~~A~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~A~ 378 (396)
++++|++.|++.++. ........|..+-.++...|+.+.+.
T Consensus 255 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 255 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred CHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998762 11223345666777777777766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=4e-11 Score=103.65 Aligned_cols=300 Identities=12% Similarity=0.049 Sum_probs=213.5
Q ss_pred CccccCChhHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHH
Q 041816 80 GDITAITPNEAFCIFDYMLNMRPSPPP---LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPD----LYTYNILINC 151 (396)
Q Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~ 151 (396)
.....|++++|++++++.+...+..+. ...++.+..++...|++++|+..+++..+... .++ ...+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 345678999999999999887655222 34677788899999999999999998865211 112 2345667778
Q ss_pred HHhcCChhhHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCccHHHHHHHHH
Q 041816 152 FCKMGRVSHGFVVLGRILRS----CFT--P-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----CKPNVITYSTLIN 220 (396)
Q Consensus 152 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~ll~ 220 (396)
+...|++..+...+...... +.. + ....+..+...+...|+++.+...+....... .......+..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 88999999999998877642 111 1 23455667788899999999999998877642 2233556667778
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCC---ChhhHHHHHHH
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP---DVVTYNSLIHG 297 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~ 297 (396)
.+...++...+...+.+..................+..+...+...|++++|...++......... ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 888899999999988877654322111111123456667778889999999999999876643322 23445667889
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC----CHHHHHHH
Q 041816 298 FCYANDWNEANCLLIEMMD----QGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNP----NTSTFSTL 364 (396)
Q Consensus 298 ~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p----~~~~~~~l 364 (396)
+...|++++|...++++.. .+..|+ ...+..+..+|...|++++|.+.+++..+. |... ....+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~ 340 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 9999999999999998763 244443 356788889999999999999999987652 3221 22345556
Q ss_pred HHHHHhcCCHHHHHH
Q 041816 365 MDGFCLTGRVNHAKE 379 (396)
Q Consensus 365 i~~~~~~g~~~~A~~ 379 (396)
+..+...++.+++.+
T Consensus 341 ~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 341 LRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHTTCSCHHHH
T ss_pred HHHHHhcCCChHHHH
Confidence 666777777766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.9e-11 Score=99.87 Aligned_cols=197 Identities=7% Similarity=0.004 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (396)
..|+.+..++.+.+.+++|+++++++.+.+ +-+...|+....++...| ++++|+..++..++..+. +..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 344455555555666666666666665543 123445555555555544 356666666666655433 55666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+.+.|++++|+..++++.+.. +.+..+|..+...+.+.|++++|+..++++.+.+ +.+...|+.+...+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-------p~n~~a~~~r~~~l~~~ 193 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISNT 193 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------CccHHHHHHHHHHHHHc
Confidence 666666666666666666553 3355666666666666666666666666666654 34455555555444443
Q ss_pred CC------HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 267 GF------VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 267 g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+. +++|++.+....+..+. +...|+.+...+.. ...+++...++...+
T Consensus 194 ~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 194 TGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred cccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 33 45566666665554332 44555555444332 334555555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.3e-11 Score=101.30 Aligned_cols=232 Identities=11% Similarity=0.043 Sum_probs=183.4
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 041816 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-RIMEAAALFTKLKAFGCKPNVITYSTLIN 220 (396)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 220 (396)
...|+.+...+.+.+..++|+++++++++..+. +..+|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 345667777788899999999999999998754 7889999999988876 5999999999998875 457899999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 221 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
.+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|++.++.+.+.++. +...|+.+...+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHH
Confidence 9999999999999999999976 678999999999999999999999999999987655 77788887777766
Q ss_pred cCC------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc--
Q 041816 301 AND------WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN-PNTSTFSTLMDGFCLT-- 371 (396)
Q Consensus 301 ~~~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~-- 371 (396)
.+. +++|+..+..+++.. +.+...|..+...+.. ...+++.+.++...+.... .+...+..++..|...
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~ 270 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 270 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence 665 578998898888754 3456777777666554 4467888888877764222 2456667777776543
Q ss_pred C-------CHHHHHHHHHHHH
Q 041816 372 G-------RVNHAKELFVSME 385 (396)
Q Consensus 372 g-------~~~~A~~~~~~m~ 385 (396)
+ .+++|.++++.+.
T Consensus 271 ~~~~~~~~~~~ka~~l~~~l~ 291 (315)
T d2h6fa1 271 NQCDNKEDILNKALELCEILA 291 (315)
T ss_dssp TTCSSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 2 3556666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1.1e-10 Score=99.21 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT--------------KHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 152 (396)
.+.+..+|++++...+. ++..|..-+..+... +..++|..+|++..+...+.+...|...+...
T Consensus 32 ~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45577788888776543 566666555443222 22345555666555433333444455555555
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCChHHH
Q 041816 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING-LCRTGHTIVA 231 (396)
Q Consensus 153 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~g~~~~a 231 (396)
.+.|+++.|..+|+++++........+|...+..+.+.|+++.|.++|+++.+.+. .+...|...... +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHH
Confidence 55666666666666655543332334555555555555666666666665555431 222233222222 2234555555
Q ss_pred HHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC-CCCC--hhhHHHHHHHHHhcCCHHHHH
Q 041816 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD--VVTYNSLIHGFCYANDWNEAN 308 (396)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~~~~~~a~ 308 (396)
..+|+.+.... +.+...|...+....+.|+++.|..+|++..... ..|+ ...|...+..-...|+.+.+.
T Consensus 189 ~~i~e~~l~~~-------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 189 FKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhh-------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555542 3444555555555555555555555555554432 1111 224444444444555555555
Q ss_pred HHHHHHH
Q 041816 309 CLLIEMM 315 (396)
Q Consensus 309 ~~~~~~~ 315 (396)
++++++.
T Consensus 262 ~~~~r~~ 268 (308)
T d2onda1 262 KVEKRRF 268 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=5.8e-10 Score=96.08 Aligned_cols=277 Identities=10% Similarity=-0.016 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--C---CCHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRILRSCF--T---PDAV 178 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~ 178 (396)
.........+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+... . ....
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3444556677889999999999999887532211 23567788899999999999999998876321 1 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccC
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAF----GCK--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (396)
.+..+...+...|++..+...+.+.... +.. + ....+..+...+...|+++.+...+..........+ ...
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 170 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQ 170 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh--hhh
Confidence 5666778888999999999998876542 111 1 234566777889999999999999998877553221 123
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHhhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C
Q 041816 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDK----NINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP---D 322 (396)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~ 322 (396)
....+..+...+...++...+...+.+.... +..+ ....+..+...+...|++++|...+....+..... .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 3456666777888899999999888876532 1111 12345666777889999999999998876543222 2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 323 VVTFNVIMDELCKNGKMDEASRLLELMILR----GVNPN-TSTFSTLMDGFCLTGRVNHAKELFVSMES 386 (396)
Q Consensus 323 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 386 (396)
...+..+..++...|++++|...++.+... +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667888999999999999999988642 34443 45677888899999999999999988654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=5.4e-10 Score=94.75 Aligned_cols=184 Identities=10% Similarity=0.052 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHH
Q 041816 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273 (396)
Q Consensus 194 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 273 (396)
++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+.+.... ......+|...+....+.|+.+.|.
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~------~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE------DIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS------SSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCChHHHH
Confidence 4444444444433223333444444444444555555555555444432 0111223444444444445555555
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 274 ELFLQMKDKNINPDVVTYNSLIHG-FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 274 ~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++|+.+.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|+.+|++....
T Consensus 155 ~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 555544443222 22222222211 12234445555555554443 1223344445555555555555555555554443
Q ss_pred C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 353 G-VNPN--TSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 353 g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
. ..|+ ...|...+..-...|+.+.+.++++++.
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1221 2344444444444455555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=6.5e-11 Score=97.78 Aligned_cols=157 Identities=9% Similarity=-0.096 Sum_probs=106.4
Q ss_pred ccccCChhHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 158 (396)
+-...+.+.|+.-+++++...... ....+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus 9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~ 87 (259)
T d1xnfa_ 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 87 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHH
Confidence 334445666777777776543321 133467777788888888888888888887754 23667788888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 041816 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238 (396)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 238 (396)
++|+..|+++++..+. +..++..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+....
T Consensus 88 ~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 88 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 8888888888876543 56677778888888888888888888877764 234444444444555555555555555555
Q ss_pred Hh
Q 041816 239 AN 240 (396)
Q Consensus 239 ~~ 240 (396)
..
T Consensus 166 ~~ 167 (259)
T d1xnfa_ 166 EK 167 (259)
T ss_dssp HH
T ss_pred hc
Confidence 44
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=3.7e-11 Score=103.42 Aligned_cols=263 Identities=10% Similarity=-0.029 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----------cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 041816 87 PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----------TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156 (396)
Q Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 156 (396)
.++|+++++.+++..|. +...|+..-..+.. .|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~--~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 58999999999987765 66677665444332 345789999999988764 336677777777777766
Q ss_pred C--hhhHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHH
Q 041816 157 R--VSHGFVVLGRILRSCFTPDAVAFT-SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233 (396)
Q Consensus 157 ~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 233 (396)
+ +++|...+..+++.... +...+. .....+...+.+++|+..++++.+.. +-+..+|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 4 78999999999887543 455554 45577778899999999999998876 4578899999999999999988766
Q ss_pred HHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 041816 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313 (396)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 313 (396)
.++...... |+ ...+...+...+..+++...+........ ++...+..+...+...+++++|...+.+
T Consensus 200 ~~~~~~~~~--------~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 200 QGRLPENVL--------LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCSSCHHHH--------HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhH--------HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 655544321 11 12233344556777788888888776643 3566677777888888999999999988
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 041816 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTLMDGFC 369 (396)
Q Consensus 314 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 369 (396)
..+.. +.+...+..+..++...|+.++|.+.++++.+. .|+ ...|..|...+.
T Consensus 268 ~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 268 LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 87653 224567888899999999999999999999884 564 455666655443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=5e-11 Score=102.57 Aligned_cols=263 Identities=10% Similarity=-0.010 Sum_probs=191.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHHHH----------HhcCChhhHHHHHHHHHhcCCCCCHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL-YTYNILINCF----------CKMGRVSHGFVVLGRILRSCFTPDAV 178 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~ 178 (396)
+..++......+..++|+++++++.+.. |+. ..|+..-..+ ...|++++|+.+++..++..+. +..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHH
Confidence 3344444444455689999999998754 554 3454333222 2334578899999999887644 777
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 179 AFTSLIKGLCAES--RIMEAAALFTKLKAFGCKPNVITYS-TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 179 ~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
.|..+..++...+ ++++|...++++.+.. +.+...+. .....+...+..++|+..++.+.... +-+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-------p~~~~a 180 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSS 180 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-------CCCHHH
Confidence 8887777777665 5899999999998874 34566654 44567778899999999999998876 567889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 335 (396)
|+.+..++.+.|++++|...+....+. ... ...+...+...+..+++...+....... +++...+..+...+..
T Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~ 254 (334)
T d1dcea1 181 WHYRSCLLPQLHPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTV 254 (334)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHH
Confidence 999999999999998886666554432 111 1223344556677888888888887654 3455666777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 041816 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392 (396)
Q Consensus 336 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 392 (396)
.|+.++|...+.+..... +.+...+..+..++...|++++|.+.|++..+. .|+
T Consensus 255 ~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~ 308 (334)
T d1dcea1 255 LQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPM 308 (334)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGG
T ss_pred HhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Ccc
Confidence 899999999999887652 235677788888999999999999999999874 454
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=7.8e-10 Score=91.11 Aligned_cols=217 Identities=9% Similarity=-0.018 Sum_probs=146.6
Q ss_pred ChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 041816 122 HYDTVLSLFKRLNSTGLFP---DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198 (396)
Q Consensus 122 ~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 198 (396)
+.+.++.-++++....... ...+|..+..+|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 3456666666766532211 2346777888899999999999999999987644 78899999999999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 041816 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278 (396)
Q Consensus 199 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (396)
.|++..+.. +-+..++..+..+|...|++++|...|+...+.. +.+......+...+.+.+..+.+..+...
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-------PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-------cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999875 3357788889999999999999999999998865 44555555555555666666666666555
Q ss_pred HhhCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 279 MKDKNINPDVVTYNSLIHGFCYANDW----NEANCLLIEMMDQGVQPD-VVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 279 m~~~~~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
...... +...++ ++..+...... +.+...+..... ..|+ ..+|..+...|...|++++|.+.|+..+..
T Consensus 165 ~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 165 FEKSDK--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHSCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhccch--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 554322 222222 22222222111 111111111111 1122 245667888889999999999999988875
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=5.1e-08 Score=81.44 Aligned_cols=203 Identities=11% Similarity=-0.028 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-----CCCHHH
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNST----GLFP-DLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-----TPDAVA 179 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 179 (396)
|......|...|++++|.+.|.++.+. +-.+ -..+|..+..+|.+.|++++|.+.++...+... .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444466788899999999999988652 2111 235788899999999999999999998765311 112455
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCC-
Q 041816 180 FTSLIKGLCA-ESRIMEAAALFTKLKAF----GCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN- 252 (396)
Q Consensus 180 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 252 (396)
+..+...|.. .|++++|+..+++..+. +.++ ...++..+...+...|++++|+..|+++.......... ...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~-~~~~ 198 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-QWSL 198 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-GGGH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh-hhhH
Confidence 6667777744 69999999999987543 2111 24567888999999999999999999988765221110 111
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCC-CC---hhhHHHHHHHHHh--cCCHHHHHHHHHH
Q 041816 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PD---VVTYNSLIHGFCY--ANDWNEANCLLIE 313 (396)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~--~~~~~~a~~~~~~ 313 (396)
...+...+..+...|+++.|...++...+.... ++ ......++.++.. .+.+++|+..|+.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 122344555677789999999999988765322 11 1233445555443 2235555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.87 E-value=6e-06 Score=67.43 Aligned_cols=224 Identities=9% Similarity=-0.071 Sum_probs=140.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCCHHHHH
Q 041816 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPDAVAFT 181 (396)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (396)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566667777778888999999998888766 55666666666665 457777888888877765 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCH
Q 041816 182 SLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNT 253 (396)
Q Consensus 182 ~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 253 (396)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 142 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---------NDG 142 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---------TCH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---------ccc
Confidence 44444432 4567888888888877652 2222333333332 33455666666665553 355
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 254 VTYTTIIDGLCK----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 254 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
..+..|...|.. ..+...+...++...+.| +......+...|.. ..++++|...|....+.| +...
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 666666666664 456667777777766654 45555555555544 456777777777777765 3445
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 041816 326 FNVIMDELCK----NGKMDEASRLLELMILRG 353 (396)
Q Consensus 326 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 353 (396)
+..|..+|.+ ..+.++|.+.|++..+.|
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5556665554 336677777777776665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.4e-07 Score=71.90 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=57.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 187 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
+...|+++.|++.|.++. +++..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..+|.+.
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHhh
Confidence 344445555554444321 2344444445555555555555555555554443 33444445555555555
Q ss_pred CCHHHHHHHHHHHhhCCCC--------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 267 GFVDKAKELFLQMKDKNIN--------------P-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
|++++|.+.|++....... + ...++..+..++.+.|++++|...+....+.
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555555444321100 0 0123444555566666666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.81 E-value=1.8e-05 Score=64.46 Aligned_cols=226 Identities=15% Similarity=-0.030 Sum_probs=166.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHHHHH
Q 041816 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA----ESRIMEAAALFTKLKAFGCKPNVITYS 216 (396)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 216 (396)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|..+|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566777778888999999999999998876 56677777777776 568999999999988865 444455
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh----ccCCHHHHHHHHHHHhhCCCCCCh
Q 041816 217 TLINGLCR----TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC----KEGFVDKAKELFLQMKDKNINPDV 288 (396)
Q Consensus 217 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~ 288 (396)
.+...+.. ..+.+.|...++.....+ .......+...+. .......+...+......+ +.
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~ 142 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 142 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh---------hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---cc
Confidence 55555443 467788999999988766 2223333333333 3456778888888776653 66
Q ss_pred hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 041816 289 VTYNSLIHGFCY----ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGVNPNTST 360 (396)
Q Consensus 289 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 360 (396)
..+..+...+.. ..+...+...+....+.| +......+...|.. ..+.++|...|+...+.| ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 777888887775 456778888888888765 55666666666665 578999999999999876 5667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 041816 361 FSTLMDGFCL----TGRVNHAKELFVSMESMGCK 390 (396)
Q Consensus 361 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 390 (396)
+..|...|.+ ..+.++|.++|++..+.|..
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7778777765 34899999999999887753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=2.8e-07 Score=76.78 Aligned_cols=214 Identities=9% Similarity=0.013 Sum_probs=143.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHH
Q 041816 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS----CFT-PDAVAFTSLIKGLCAESRIME 195 (396)
Q Consensus 121 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~ 195 (396)
+++++|.++|.++ ...|...|++++|.+.|.+..+. +-. .-..+|..+..+|.+.|++++
T Consensus 31 ~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 4577788776654 56788999999999999988763 111 124678899999999999999
Q ss_pred HHHHHHHHHhc----CC-CccHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCH
Q 041816 196 AAALFTKLKAF----GC-KPNVITYSTLINGLC-RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269 (396)
Q Consensus 196 a~~~~~~~~~~----g~-~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (396)
|...+++..+. |. .....++..+...|. ..|++++|+..+++........+. ..--..++..+...+...|++
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y 174 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQY 174 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChH
Confidence 99999987653 21 111445666676774 469999999999987653210000 011234678889999999999
Q ss_pred HHHHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HhhHHHHHHHHHh--cC
Q 041816 270 DKAKELFLQMKDKNINPDV------VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-PD---VVTFNVIMDELCK--NG 337 (396)
Q Consensus 270 ~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g 337 (396)
++|...|+++......... ..+...+..+...|+++.|...+++..+.... ++ ......++.++.. .+
T Consensus 175 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHH
Confidence 9999999998765332111 12344555667889999999999988764311 11 2244556666654 34
Q ss_pred CHHHHHHHHHHHH
Q 041816 338 KMDEASRLLELMI 350 (396)
Q Consensus 338 ~~~~A~~~~~~m~ 350 (396)
.+++|...|+.+.
T Consensus 255 ~~~eai~~y~~~~ 267 (290)
T d1qqea_ 255 QLSEHCKEFDNFM 267 (290)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHh
Confidence 5777777776554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=3.2e-07 Score=71.21 Aligned_cols=124 Identities=9% Similarity=-0.097 Sum_probs=96.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041816 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193 (396)
Q Consensus 114 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (396)
...+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|++.++..+. +...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence 345667788888888887642 467778888888888889999999999888887644 677888888888888999
Q ss_pred HHHHHHHHHHHhcC------------CC--c-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 041816 194 MEAAALFTKLKAFG------------CK--P-NVITYSTLINGLCRTGHTIVALNLFEEMANGN 242 (396)
Q Consensus 194 ~~a~~~~~~~~~~g------------~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 242 (396)
++|.+.|++..... .. . ...++..+..++.+.|++++|.+.++......
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99988888876531 11 1 13556677888999999999999999988754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=5.7e-07 Score=63.51 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=47.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChH
Q 041816 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229 (396)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 229 (396)
..+.+.|++++|+..|.+.++..+. +...|..+..+|...|++++|+..+++..+.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 3344555555555555555554322 44555555555555555555555555555543 234455555555555555555
Q ss_pred HHHHHHHHHHhc
Q 041816 230 VALNLFEEMANG 241 (396)
Q Consensus 230 ~a~~~~~~~~~~ 241 (396)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=6.7e-07 Score=63.12 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++.....+ +.+...|..+..++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-------cchhhHHHHHHHHH
Confidence 445556666666666666666553 3355666666666666666666666666666654 45566666666666
Q ss_pred hccCCHHHHHHHHHHHhhC
Q 041816 264 CKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~ 282 (396)
...|++++|+..|+...+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=6.4e-07 Score=67.17 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=47.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 184 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+..+|..+..++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-------p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-------ccchHHHHHHHHHH
Confidence 334445555555555555555543 2345555555555555555555555555555543 33444555555555
Q ss_pred hccCCHHHHHHHHHHHhhC
Q 041816 264 CKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~ 282 (396)
...|++++|.+.+++....
T Consensus 89 ~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=8.2e-07 Score=66.57 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=61.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 228 (396)
...|.+.|++++|+..|.+.++..+. +...|..+..+|...|++++|...|++..+.. +-+..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 44556667777777777777666533 66666677777777777777777777766654 33556677777777777777
Q ss_pred HHHHHHHHHHHhcC
Q 041816 229 IVALNLFEEMANGN 242 (396)
Q Consensus 229 ~~a~~~~~~~~~~~ 242 (396)
++|...+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777766643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=1.6e-07 Score=73.52 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++..... +-+..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------p~~~~a 74 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKA 74 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------CCcHHH
Confidence 33334444444445555555555554444432 2344444555555555555555555555544432 223444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMK 280 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~ 280 (396)
|..+..+|.+.|++++|+..|++..
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=6.5e-07 Score=69.92 Aligned_cols=99 Identities=15% Similarity=-0.041 Sum_probs=89.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChh
Q 041816 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289 (396)
Q Consensus 210 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 289 (396)
|+...+......|.+.|++++|+..|+++.... |.+...|..+..+|.+.|++++|+..|+...+.... +..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHH
Confidence 566777788899999999999999999998875 678889999999999999999999999999876544 677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 290 TYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 290 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
+|..+..+|...|++++|+..|+++.+
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999998875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.42 E-value=1.5e-06 Score=60.66 Aligned_cols=87 Identities=9% Similarity=0.026 Sum_probs=42.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCh
Q 041816 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228 (396)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 228 (396)
...+.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|+..|++..+.. +.+..+|..+...|...|+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 33444455555555555555544322 44555555555555555555555555554443 22344455555555555555
Q ss_pred HHHHHHHHH
Q 041816 229 IVALNLFEE 237 (396)
Q Consensus 229 ~~a~~~~~~ 237 (396)
++|++.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.41 E-value=1.9e-06 Score=60.08 Aligned_cols=93 Identities=10% Similarity=-0.102 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041816 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189 (396)
Q Consensus 110 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (396)
+..+...+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..+++.++..+. +..++..+...|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHH
Confidence 4456778889999999999999998865 236889999999999999999999999999998644 78999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 041816 190 ESRIMEAAALFTKLK 204 (396)
Q Consensus 190 ~g~~~~a~~~~~~~~ 204 (396)
.|++++|++.+++..
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998863
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.4e-07 Score=84.96 Aligned_cols=114 Identities=10% Similarity=-0.101 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhh
Q 041816 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255 (396)
Q Consensus 176 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+...+..+...+.+.|+.++|...+.+..... ...++..+...+...|++++|...|++..... |.+...
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-------P~~~~~ 188 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-------PSNGQP 188 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTBSHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCchHH
Confidence 44555666666667777777776666554421 12455666677777777777777777777654 445567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 041816 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300 (396)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 300 (396)
|+.|...+...|+..+|...|.+..... .|-..++..|...+.+
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 7777777777777777777777766553 2456666666665543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.34 E-value=0.00052 Score=57.14 Aligned_cols=271 Identities=9% Similarity=0.011 Sum_probs=165.9
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
|.-..+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+...+.+...
T Consensus 21 ~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 21 GDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp --------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH
Confidence 344456788999999998762 2778889999999999998887754 267789899999888766
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 237 (396)
...+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .++..+.++.
T Consensus 85 ~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 85 FRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence 5443 22233334466667789999999999999999999876542 457778899999998865 3444444444
Q ss_pred HHhcCCCCc-ccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041816 238 MANGNGKFG-VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316 (396)
Q Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 316 (396)
......... ...-.....|.-++-.|.+.|+++.|..+.-. . .++..-....+..+.+..+.+...++.....+
T Consensus 158 ~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 158 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 322110000 00000112344555666666666665544322 1 12333445566666777777666666665554
Q ss_pred CCCCCCHh-----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 317 QGVQPDVV-----------TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 317 ~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
. .|+.. .-..++..+.+.+++......++.....| +..+.+++...|...++++.-.+..
T Consensus 233 ~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 233 F--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp H--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 2 23211 11334455556666666666666655543 4578999999999999976644443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.9e-06 Score=58.79 Aligned_cols=94 Identities=13% Similarity=-0.027 Sum_probs=52.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcc-HHHHHHHHHHH
Q 041816 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR---IMEAAALFTKLKAFGCKPN-VITYSTLINGL 222 (396)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~ 222 (396)
.+++.+...+++++|.+.|+..++.++. +..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3455555566666666666666665432 55555556666655333 3346666666555432222 23455566666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 041816 223 CRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 223 ~~~g~~~~a~~~~~~~~~~ 241 (396)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.9e-06 Score=60.06 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCC---HHHHHHHHHHHhhCCCCCC-hhhHH
Q 041816 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---VDKAKELFLQMKDKNINPD-VVTYN 292 (396)
Q Consensus 217 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~ 292 (396)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~ 76 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF 76 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence 45566666777777777777777664 5566667777766665443 3457777777665543333 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 041816 293 SLIHGFCYANDWNEANCLLIEMMDQ 317 (396)
Q Consensus 293 ~li~~~~~~~~~~~a~~~~~~~~~~ 317 (396)
.+..+|.+.|++++|...|+++++.
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6667777777777777777777663
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=0.00051 Score=57.18 Aligned_cols=239 Identities=12% Similarity=0.107 Sum_probs=140.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHH
Q 041816 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184 (396)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (396)
++..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.- +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444455677788899999999999987653 6778888999999999988876542 677898999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHh
Q 041816 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 264 (396)
..+.+......+ .+...+...+......++..|-..|..++...+++...... ..+...++.++..|+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-------~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-------ccchHHHHHHHHHHH
Confidence 999888776554 22233334466666789999999999999999999886543 567778899999999
Q ss_pred ccCCHHHHHHHHHHHhhCCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 041816 265 KEGFVDKAKELFLQMKDKNINP--------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336 (396)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~~~~p--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 336 (396)
+.+ .++..+.++.... ...+ ....|.-++-.|.+.|+++.|..+. .++ .++..-....+..+.+.
T Consensus 145 k~~-~~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 145 KFK-PQKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKV 217 (336)
T ss_dssp TTC-HHHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHC
T ss_pred HhC-hHHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHcc
Confidence 865 3444444433211 1111 1122344455555555555554332 222 23343445566667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 337 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
++.+...++.....+. .| ...+.++......-+..+..+.+
T Consensus 218 ~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 218 ANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp SSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHH
Confidence 7777777766665553 23 33344444444444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.4e-05 Score=58.97 Aligned_cols=127 Identities=12% Similarity=-0.077 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041816 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187 (396)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (396)
..+......+.+.|++++|+..|.+..... |... +....-......+ -..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh-------HHHHHHHHHHHH
Confidence 445556667778888888888888776531 1000 0000000111111 123566677788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 188 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
.+.|++++|+..+++.++.. +.++.+|..+..+|...|++++|+..|++..+.. |.+......+..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 88888888888888888775 4477788888888888888888888888888764 33454544444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.2e-05 Score=59.18 Aligned_cols=63 Identities=8% Similarity=-0.079 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 214 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
+|+.+..+|.+.|++++|+..++...... |.++.+|..+..+|...|++++|...|+...+.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45556666677777777777777766654 4466666666677777777777777777766643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=0.00011 Score=54.08 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHH
Q 041816 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218 (396)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 218 (396)
.+|..+..+|.+.|++++|++.+...++..+ .+..+|..+..++...|++++|+..|++..+.. |-+..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3566677777888888888888888877653 367778888888888888888888888877764 2244444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.2e-05 Score=55.10 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC-----HHHHHHHH
Q 041816 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD-----AVAFTSLI 184 (396)
Q Consensus 111 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~ 184 (396)
..+...+.+.|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344455555666666666666655543 224555555666666666666666666655542111 00 12444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 041816 185 KGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
..+...+++++|+..|++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 5555666666666666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=5e-05 Score=55.95 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCC
Q 041816 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 213 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
.+|..+..+|.+.|++++|++.++.+.... |.+..+|..+..++...|++++|+..|+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355666677777777777777777776654 4566677777777777777777777777766653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=9.6e-06 Score=57.95 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCH-----
Q 041816 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT----- 253 (396)
Q Consensus 179 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----- 253 (396)
.+..+...+.+.|++++|+..|.+..+.+ +.+..++..+..+|.+.|++++|+..++++.+.. +.+.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-------~~~~~~~~~ 77 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-------RENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------HHSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-------cccHHHHHH
Confidence 34566778888899999999999888875 4478888889999999999999999999887643 2222
Q ss_pred --hhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 254 --VTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 254 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
.+|..+...+...+++++|++.|+.....
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 35556666777778888888888776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=4.6e-05 Score=57.28 Aligned_cols=127 Identities=6% Similarity=-0.024 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041816 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188 (396)
Q Consensus 109 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (396)
.+......+...|++++|++.|.++.+. ............. .... +.....+..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG-------AKLQ-PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHH
Confidence 4555666677788888888888776531 0000000010000 0000 124556777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHH
Q 041816 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263 (396)
Q Consensus 189 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 263 (396)
+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+......+..+.
T Consensus 89 ~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-------p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVK 155 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 9999999999999988875 4578888899999999999999999999988865 44555555555444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=4.8e-05 Score=57.15 Aligned_cols=64 Identities=11% Similarity=-0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
...|..+..++.+.|++++|+..++++.+.. +.+..+|..+..+|...|++++|++.|+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3345555556666666666666666665543 445555666666666666666666666665554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.7e-06 Score=76.38 Aligned_cols=228 Identities=8% Similarity=-0.051 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHH
Q 041816 89 EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-TYNILINCFCKMGRVSHGFVVLGR 167 (396)
Q Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~ 167 (396)
+|.+.|+++.+..+. ....+..+..++...+++++| |+++...+ |+.. .++... .+.+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHHH-HHHHHHHHHHHH
Confidence 688999999886543 566778888889988888876 77776532 3211 111111 1111 124566777777
Q ss_pred HHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 041816 168 ILRSCFTPDAVAFTSLIK--GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 245 (396)
..+....++..-....+. .....+.++.++..+....+.. +.+...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 765543333322222221 2223445555555555444332 3456678888888999999999998888766532
Q ss_pred cccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 041816 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 325 (396)
...++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|...|.+..... +|-..+
T Consensus 151 ------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 151 ------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred ------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 2357778899999999999999999999887654 77899999999999999999999999998764 566778
Q ss_pred HHHHHHHHHhcC
Q 041816 326 FNVIMDELCKNG 337 (396)
Q Consensus 326 ~~~l~~~~~~~g 337 (396)
+..|...+.+..
T Consensus 223 ~~nL~~~~~~~~ 234 (497)
T d1ya0a1 223 STNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 888877776543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=8.3e-05 Score=55.73 Aligned_cols=61 Identities=10% Similarity=-0.023 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhC
Q 041816 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282 (396)
Q Consensus 215 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (396)
|..+..+|.+.|++++|+..++...... +.+..+|..+..++...|++++|...|+.....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555666666666666655543 445555555555556666666666666555544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.00 E-value=8.7e-05 Score=55.59 Aligned_cols=129 Identities=13% Similarity=-0.069 Sum_probs=79.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh-HHHHHHHHHhcCCCCCHHHHHHHHH
Q 041816 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH-GFVVLGRILRSCFTPDAVAFTSLIK 185 (396)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (396)
...+......+.+.|++++|+..|++....- + ..-.... .......+ ...+|..+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~-------------~~~~~~~~~~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--E-------------MEYGLSEKESKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--T-------------TCCSCCHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H-------------Hhhccchhhhhhcchh-------HHHHHHhHHH
Confidence 4456666777777888888888887754310 0 0000000 00000110 1335566777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhc
Q 041816 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265 (396)
Q Consensus 186 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 265 (396)
+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|+++.... |.+......+-....+
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 7888888888888888887764 4567788888888888888888888888888764 4455555554444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=0.00022 Score=53.85 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=82.4
Q ss_pred CCCccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 041816 78 GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157 (396)
Q Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 157 (396)
|......|++++|.+.|...+.....+.-. .....+-+...-..+.. .....+..+...+.+.|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 455667778888888888777654331110 00111111111111211 123456778888999999
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCccHHH
Q 041816 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-----FGCKPNVIT 214 (396)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~ 214 (396)
+++|+..++.+++..+ -+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 83 ~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 83 ASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred chHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998764 4889999999999999999999999998743 588888755
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=0.00011 Score=55.45 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHh-----hCCCCC
Q 041816 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-----DKNINP 286 (396)
Q Consensus 212 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p 286 (396)
...+..+...+...|++++|+..++.+.... +-+...|..++.+|.+.|+.++|++.|+++. +.|+.|
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456667777777777777777777777764 5566777777777777777777777777753 246666
Q ss_pred Chhh
Q 041816 287 DVVT 290 (396)
Q Consensus 287 ~~~~ 290 (396)
...+
T Consensus 140 ~~~l 143 (179)
T d2ff4a2 140 GPTL 143 (179)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.93 E-value=9.5e-06 Score=65.82 Aligned_cols=122 Identities=6% Similarity=-0.081 Sum_probs=72.6
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChh
Q 041816 81 DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYNILINCFCKMGRVS 159 (396)
Q Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 159 (396)
.++.|++++|+..+++.++..|. +...+..+...++..|++++|++.++...+.. |+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence 35678888888888888887664 88888888888888888888888888887743 43 333333333332222222
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
++..........+.+++...+......+...|+.++|...++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111110001111222333344455566677777777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.78 E-value=9.7e-05 Score=53.74 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHhcCCCCcccccCCHhhHHHHH
Q 041816 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH-----------TIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260 (396)
Q Consensus 192 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li 260 (396)
.+++|+..|++..+.. +.+..+|..+..+|...|+ +++|.+.|++..+. .|+...+..-+
T Consensus 56 ~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L 126 (145)
T d1zu2a1 56 MIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSL 126 (145)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHH
Confidence 3466777777777664 3456677777766665442 45666777776664 34444444433
Q ss_pred HHHhccCCHHHHHHHHHHHhhCC
Q 041816 261 DGLCKEGFVDKAKELFLQMKDKN 283 (396)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~ 283 (396)
..+ ..|.+++.++.+.|
T Consensus 127 ~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 127 EMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHH------HTHHHHHHHHHHSS
T ss_pred HHH------HHHHHHHHHHHHHh
Confidence 333 34455555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.73 E-value=4.3e-05 Score=61.85 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041816 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206 (396)
Q Consensus 154 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 206 (396)
+.|++++|+..+++.++..+. +...+..+...|+..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445666666666666555432 5555556666666666666666666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.72 E-value=8.1e-05 Score=54.20 Aligned_cols=73 Identities=10% Similarity=-0.116 Sum_probs=51.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccC----------CHHHHHHHHHHHhhCCCCCChhhH
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG----------FVDKAKELFLQMKDKNINPDVVTY 291 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~~~~p~~~~~ 291 (396)
|-+.+.+++|+..|+...+.. |.+..++..+..++...+ .+++|+..|++..+.++. +..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHH
Confidence 445667899999999999876 677888888888877543 446677777777665443 55666
Q ss_pred HHHHHHHHhcC
Q 041816 292 NSLIHGFCYAN 302 (396)
Q Consensus 292 ~~li~~~~~~~ 302 (396)
..+..+|...|
T Consensus 79 ~~lG~~y~~~g 89 (145)
T d1zu2a1 79 WCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHcc
Confidence 66666665443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.0018 Score=47.42 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=29.3
Q ss_pred hhHHHH--HHHHhccCCHHHHHHHHHHHhhCCCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 254 VTYTTI--IDGLCKEGFVDKAKELFLQMKDKNIN-PD----------VVTYNSLIHGFCYANDWNEANCLLIEMM 315 (396)
Q Consensus 254 ~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~-p~----------~~~~~~li~~~~~~~~~~~a~~~~~~~~ 315 (396)
.+|..+ ...+.+.|++++|+..|++..+.... |+ ..+|+.+..+|...|++++|...+++.+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 344444 33444556666666666665542111 11 1234444455555555555555544444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.0014 Score=47.90 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc-----cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 041816 178 VAFTSLIKGLCAESRIMEAAALFTKLKAF-----GCKP-----NVITYSTLINGLCRTGHTIVALNLFEEMAN 240 (396)
Q Consensus 178 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 240 (396)
..|+.+..+|.+.|++++|...+++..+. ...+ ...+++.+..+|...|++++|+..|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555432 0011 122455667777777777777777777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00073 Score=44.77 Aligned_cols=83 Identities=10% Similarity=-0.043 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhh
Q 041816 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290 (396)
Q Consensus 211 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 290 (396)
+...+..+...+.+.|++++|...|++..+..............+++.+..++.+.|++++|++.++++.+..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 444566788889999999999999998876431111001122457888899999999999999999998876543 3444
Q ss_pred HHHH
Q 041816 291 YNSL 294 (396)
Q Consensus 291 ~~~l 294 (396)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.017 Score=40.53 Aligned_cols=113 Identities=11% Similarity=0.012 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEA 342 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 342 (396)
.|+++|+++|++..+.| +...+..|.. ....+.++|..++++..+.| +......|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 36789999999988876 3334444433 34568899999999998876 45555666666654 4678999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 041816 343 SRLLELMILRGVNPNTSTFSTLMDGFCL----TGRVNHAKELFVSMESMGCK 390 (396)
Q Consensus 343 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 390 (396)
.++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|..
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999999876 45566667666665 46899999999999888753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0037 Score=41.13 Aligned_cols=60 Identities=15% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC------CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 182 SLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 182 ~l~~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
.+...+.+.|++++|+..|++..+.. ......++..+..++.+.|++++|+..++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444455555555555554443320 0011334555555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.018 Score=40.44 Aligned_cols=111 Identities=10% Similarity=-0.032 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cC
Q 041816 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY----AN 302 (396)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~ 302 (396)
|+++|+++|++..+.+ +...+..|. .....+.++|++++++..+.| +......|...|.. ..
T Consensus 8 d~~~A~~~~~kaa~~g---------~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~ 73 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---------EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 73 (133)
T ss_dssp HHHHHHHHHHHHHHTT---------CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHHCC---------Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccch
Confidence 6778899999888766 233333343 344568899999999998876 56666667666654 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 041816 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK----NGKMDEASRLLELMILRGV 354 (396)
Q Consensus 303 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 354 (396)
+.++|.++|++..+.| +......|...|.. ..+.++|.++|+...+.|.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7899999999999876 44455566666665 4689999999999988764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.03 E-value=0.11 Score=35.10 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 041816 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354 (396)
Q Consensus 289 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 354 (396)
..++..++.....|.-++-.++++++.+. -+|++...-.+..+|.+.|...++-+++.++.++|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555555566666666666555443 245555555566666666666666666666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.55 E-value=0.19 Score=34.02 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=97.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhccCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 041816 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301 (396)
Q Consensus 222 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 301 (396)
+.-.|..++..+++.+..... +..-||-+|--....-+-+...++++.+-.. .|. ..+
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---------~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C 69 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---------TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKC 69 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGC
T ss_pred HHHhhhHHhHHHHHHHHcccC---------CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhh
Confidence 445677888888888877643 4555666665555556666666666666442 121 123
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 041816 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381 (396)
Q Consensus 302 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 381 (396)
++.......+-.+ ..+...++..++.+.+.|+-+.-.++++.+.+. -++++...-.+..+|.+.|...++-+++
T Consensus 70 ~Nlk~vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell 143 (161)
T d1wy6a1 70 QNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 143 (161)
T ss_dssp SCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3333333333222 123455667788889999999999999998775 5788999999999999999999999999
Q ss_pred HHHHhCCCC
Q 041816 382 VSMESMGCK 390 (396)
Q Consensus 382 ~~m~~~g~~ 390 (396)
.+.-+.|++
T Consensus 144 ~~ACe~G~K 152 (161)
T d1wy6a1 144 IEACKKGEK 152 (161)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHHhHH
Confidence 999999874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.96 E-value=0.33 Score=32.87 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041816 286 PDVVTYNSLIHGFCYAN---DWNEANCLLIEMMDQGVQPDV-VTFNVIMDELCKNGKMDEASRLLELMIL 351 (396)
Q Consensus 286 p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 351 (396)
+...+--...-++.+.. +.++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444444444444433 3456666666666532 1122 3444555566666666666666666666
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.33 E-value=0.71 Score=29.39 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 041816 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 352 (396)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555665565555555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.20 E-value=1 Score=30.29 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=9.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 041816 183 LIKGLCAESRIMEAAALFTKLKA 205 (396)
Q Consensus 183 l~~~~~~~g~~~~a~~~~~~~~~ 205 (396)
|.-+|.+.|++++|.+.++.+.+
T Consensus 79 Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 79 LTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHc
Confidence 33344444444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=3.9 Score=34.54 Aligned_cols=182 Identities=10% Similarity=-0.082 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHH----HHHHHhcCChHHHHHHHHHHHhcCCCCcccccCCHhhHHHHHHHHhcc
Q 041816 191 SRIMEAAALFTKLKAFGCKPNVITYSTL----INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266 (396)
Q Consensus 191 g~~~~a~~~~~~~~~~g~~~~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 266 (396)
.+.+.+..++......... +...+..+ .......+..+.+..++....... .+.....-.+......
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--------QSTSLIERRVRMALGT 298 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--------CCHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--------cchHHHHHHHHHHHHc
Confidence 4666777777766554322 22222222 222233566677777777766543 3444444555566777
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------CCCCC----------Hh
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ------------GVQPD----------VV 324 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------~~~p~----------~~ 324 (396)
+++..+...++.|..... -...-..-+..++...|+.++|...|..+... |.+++ ..
T Consensus 299 ~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 377 (450)
T d1qsaa1 299 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDS 377 (450)
T ss_dssp TCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCC
T ss_pred CChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHH
Confidence 899999999988864322 23455567778889999999999999887642 11110 00
Q ss_pred h-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 325 T-----FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 325 ~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
. -..-+..+...|....|...|..+... .+......+.....+.|.++.|+....+..
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 123345677889999999999888764 256666777888889999999987766553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.46 E-value=3 Score=26.44 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 041816 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241 (396)
Q Consensus 195 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 241 (396)
++.+-++.+....+.|++.+..+.+++|.+.+++..|.++++..+..
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.89 E-value=12 Score=31.31 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 041816 267 GFVDKAKELFLQMKDKNINPDVVTYNSLI----HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342 (396)
Q Consensus 267 g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 342 (396)
.+.+.|..++......... +..-+..+- ......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4566666666665443211 111121111 12223344555666655555433 2333333344445556677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041816 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385 (396)
Q Consensus 343 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 385 (396)
...+..|.... .-...-.-=+..++...|+.++|..+|....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 76666664321 1122222334466666777777777776654
|