Citrus Sinensis ID: 041820

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEccccccccccHHHHHHccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEcEccccccEEEcccccccEcccccccccccccEEEccccccEEcccEEEEccccccccEccccccccccccHHEHHHHHccccccccccccccccEEEEccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEcccccccEcccccHHcccccccccEcccHcccccccEEEEEccccccccHHHHHHHHcccccHHEHHHHHccccccHHcccccccc
Coil and Loop (DISEMBL)
mvkekilgppengllvkELIPVAHDVFAARTELLACVTRVAKSIAIYTCSlcgevhvghpphkirtcnvagslaskehswklGNVEHILSHVESFHLYDRIgravshnerlqvdqipaVNELCIQagidipqyptrrrvfpaynlagkvidfekrfpkedrssegietfgfwgnrkksseenksidvnaDEAQAVAVRGMETWGKMRSGISKLMQKYAVQtcgycpevqvgpkghrvrncqAYKHQMRDGQHAwqeatvddlvppvyvwhvqdpksgkpLVNELKRYYGMLPAVVELFAQAGAkvscdytglmred
Flexible Loop (DISEMBL)
mvkekilgppengLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIdipqyptrrRVFPAYNlagkvidfekrfpkedrssegietfgfwgnrkksseenksidvnadeAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED
Low Complexity Region (SEG)
MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED
Disordered region (IsUnstruct)
************GLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRF*********IETFGFW*********************AVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGL****
Disordered Region (DISOPRED)
*********PENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNV**********WKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDF******************************************VAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMR**
Disordered Region (DISEMBL)
MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYK********AWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED
Disordered Region (DISPRO)
****KILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEK******************************IDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9FH50	402	APO protein 3, mitochondr	yes	no	0.943	0.741	0.474	3e-78
Q9XIR4	436	APO protein 1, chloroplas	no	no	0.958	0.694	0.414	4e-67
Q8W4A5	440	APO protein 2, chloroplas	no	no	0.936	0.672	0.388	5e-64
Q9LSZ0	337	APO protein 4, mitochondr	no	no	0.838	0.786	0.326	7e-40

>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 148/312 (47%), Positives = 199/312 (63%), Gaps = 14/312 (4%)

Query: 9   PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCN 68
           PP+NGLLV EL+ VAH V   R  LL+ ++++   + ++ C LC EVH+G   H+IRTC 
Sbjct: 88  PPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCT 147

Query: 69  VAGSLA-SKEHSWKLGNVEHILSHVESFHLYDR-IGRAVSHNERLQVDQIPAVNELCIQA 126
             GS + S  H WK G V  ++   + FHLYDR +   V H+ER  V +I AV ELCIQA
Sbjct: 148 GPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQA 207

Query: 127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSE--GIETFGFWGNRKKSSEENKS 184
           G+D+ ++P++RR  P Y++ G+++DFE      D +SE     T        +  EE KS
Sbjct: 208 GVDLEKFPSKRRSKPVYSIEGRIVDFED---VNDGNSELAVTSTTTLIQEDDRCKEEKKS 264

Query: 185 IDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYK 244
           +       + ++   ME+W +M  G+ KLM++Y V TCGYCPE+QVGPKGH+VR C+A K
Sbjct: 265 L-------KELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATK 317

Query: 245 HQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAK 304
           HQMRDG HAWQEAT+DD+V P YVWHV+DP  G  L N LKR+YG  PAV+E+  Q GA 
Sbjct: 318 HQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAP 377

Query: 305 VSCDYTGLMRED 316
           V   Y  +MR D
Sbjct: 378 VPDQYNSMMRLD 389

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1

 Score =  254 bits (650), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 134/323 (41%), Positives = 187/323 (57%), Gaps = 20/323 (6%)

Query: 4   EKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHK 63
           EK L PP+NGLLV  L+PVA  V      L+  + ++   + ++ CS CG VHV +  H 
Sbjct: 111 EKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHN 170

Query: 64  IRTCN-VAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNEL 122
           IR CN    S     HSW  G +  +L  VES+H+YD  GR + H  R + ++IPA+ EL
Sbjct: 171 IRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVEL 230

Query: 123 CIQAGIDIPQYPTRRRVFPAYNLAGKVID---FEKRFPKEDRSSE------GIETFGFWG 173
           CIQAG++IP+YP RRR  P   +  +VID   + K   K   SS        ++T G + 
Sbjct: 231 CIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFE 290

Query: 174 NRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPK 233
                + E+            +A   M+ + K+R G++KLM+K+ V+ CGYC EV VGP 
Sbjct: 291 RYPPPTPED---------IPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPW 341

Query: 234 GHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPA 293
           GH V+ C  +KHQ RDG+H WQ+A VD++ PP YVWHV+D K G PL   L+R+YG  PA
Sbjct: 342 GHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPA 400

Query: 294 VVELFAQAGAKVSCDYTGLMRED 316
           +VE+   +GA+V   Y  +MR D
Sbjct: 401 LVEICMHSGARVPQRYKAMMRLD 423

Involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/306 (38%), Positives = 178/306 (58%), Gaps = 10/306 (3%)

Query: 12  NGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAG 71
           NG++VK L+P+A+ V+ AR  L+  + R+ K + +  C  C E+HVG   H  ++C    
Sbjct: 126 NGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPN 185

Query: 72  SLASKE-HSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDI 130
           +   K  H W    +E ++  +E++HL+DR+G+ + H+ER  + ++PAV ELCIQ G++I
Sbjct: 186 TSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEI 245

Query: 131 PQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNAD 190
           P++P +RR  P   +       +  F   D +               +      I   + 
Sbjct: 246 PEFPAKRRRKPIIRIG------KSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSS 299

Query: 191 EAQAVAV--RGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMR 248
           E + V++    ++ W +MR+G  KLM+ Y V+ CGYCPEV VGP GH+ +NC A+KHQ R
Sbjct: 300 EEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQR 359

Query: 249 DGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCD 308
           +GQH WQ A +DDL+PP YVWHV D  +G P+  EL+ +YG  PAVVE+ AQAGA V   
Sbjct: 360 NGQHGWQSAVLDDLIPPRYVWHVPD-VNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEH 418

Query: 309 YTGLMR 314
           Y   MR
Sbjct: 419 YRATMR 424

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 35/300 (11%)

Query: 16  VKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTC-NVAGSLA 74
           VKE++PVA ++  AR  L++ +  + K   + TC  C EV VG   H I TC +      
Sbjct: 55  VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 75  SKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYP 134
           ++ H W  G++  IL  VES+HL++     + H ER   D++PA+ ELC QAG   P+  
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 172

Query: 135 TRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQA 194
                                        E ++      N + S E+ +S+   A + + 
Sbjct: 173 -----------------------------EILQYSEIHDNPQISEEDIRSLP--AGDLKY 201

Query: 195 VAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAW 254
           V    +  W K+R+G+ KL+  Y  + C  C EV VGP GH+ R C  +K++   G H W
Sbjct: 202 VGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYW 261

Query: 255 QEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMR 314
           ++A V+DLVP   VWH + P+    LV+E + YYG  PA+V L +  GA V   Y   M+
Sbjct: 262 EKAGVNDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
255554553	390	APO protein 3, mitochondrial precursor,	1.0	0.810	0.718	1e-142
225445939	481	PREDICTED: APO protein 3, mitochondrial-	0.993	0.652	0.723	1e-136
297735471	454	unnamed protein product [Vitis vinifera]	0.993	0.691	0.723	1e-135
356537256	404	PREDICTED: APO protein 3, mitochondrial-	0.996	0.779	0.701	1e-131
449436777	402	PREDICTED: APO protein 3, mitochondrial-	0.990	0.778	0.669	1e-126
356498611	363	PREDICTED: LOW QUALITY PROTEIN: APO prot	0.984	0.856	0.676	1e-123
147861941	805	hypothetical protein VITISV_044397 [Viti	0.898	0.352	0.722	1e-123
294461147	442	unknown [Picea sitchensis]	0.990	0.708	0.532	8e-99
224134160	340	predicted protein [Populus trichocarpa]	0.952	0.885	0.491	2e-80
255540051	414	translation factor sui1, putative [Ricin	0.968	0.739	0.496	4e-80

>gi|255554553|ref|XP_002518315.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis] gi|223542535|gb|EEF44075.1| APO protein 3, mitochondrial precursor, putative [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 227/316 (71%), Positives = 280/316 (88%)

Query: 1   MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHP 60
           +V+E+IL PPENGLLVKELIPVAH+V++AR ELL+CV++V +SIA+Y+CS+CGEVHVGHP
Sbjct: 62  LVRERILRPPENGLLVKELIPVAHEVYSARMELLSCVSKVVESIAVYSCSVCGEVHVGHP 121

Query: 61  PHKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVN 120
           PHKIRTCNV GS A+KEH W +G +E++L  VESFHLYDR+GRAVSHNER+QVD+IPA+ 
Sbjct: 122 PHKIRTCNVIGSQANKEHMWNIGGMENVLPLVESFHLYDRLGRAVSHNERIQVDRIPAIM 181

Query: 121 ELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSE 180
           ELCIQ G++IP+YPTRRR FPAY++AG+++DFE+RFPKED   +GI T GFW  R KSS+
Sbjct: 182 ELCIQGGVNIPEYPTRRRAFPAYSVAGRIMDFERRFPKEDAPGKGINTNGFWERRNKSSK 241

Query: 181 ENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNC 240
            ++ +D ++D  Q +A+RGME W K+++G ++LM+KYAV TCGYCPEVQVGPKGH+VRNC
Sbjct: 242 HDEPMDFHSDGLQGIAIRGMEAWKKLQTGATELMRKYAVHTCGYCPEVQVGPKGHKVRNC 301

Query: 241 QAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQ 300
           QAYKHQMRDGQHAWQ+ATV+DLVPPVYVWHV+D +SG+PLVN LKRYYGMLPAV+ELFAQ
Sbjct: 302 QAYKHQMRDGQHAWQQATVNDLVPPVYVWHVRDQQSGEPLVNNLKRYYGMLPAVLELFAQ 361

Query: 301 AGAKVSCDYTGLMRED 316
           AGA VS DY GLMRED
Sbjct: 362 AGAHVSDDYAGLMRED 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445939|ref|XP_002263886.1| PREDICTED: APO protein 3, mitochondrial-like [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 260/315 (82%), Gaps = 1/315 (0%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E  L PPENGLLVK L+P AH+V+AAR +L  CV+ V KS  IY+C LCGEVHVGHPP
Sbjct: 155 VSEITLRPPENGLLVKGLVPFAHEVYAARAKLFTCVSMVVKSTIIYSCRLCGEVHVGHPP 214

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           HKIRTCNV GS ASKEH W++G VEH+L  VESFHLYDR+GRAVSHNERLQVDQIPA+ E
Sbjct: 215 HKIRTCNVTGSPASKEHVWEIGGVEHVLPLVESFHLYDRLGRAVSHNERLQVDQIPAIVE 274

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LCIQAG+DIP+YPTRRR FP YN+AG++IDFE+RFPK D   + I  +GFW  R +SS E
Sbjct: 275 LCIQAGLDIPEYPTRRRTFPVYNVAGRMIDFERRFPKYDSPGKDINAYGFWEKRNQSS-E 333

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
           NKS+ + AD+ Q  A++GME W KM  G SKLMQKYAVQTCGYC EVQVGPKGHRVRNCQ
Sbjct: 334 NKSMHLLADDVQGFAIQGMEAWEKMWLGASKLMQKYAVQTCGYCSEVQVGPKGHRVRNCQ 393

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQA 301
           AYKHQMRDGQHAWQEATVDDL+PPV+VWHV+D + G PLVN L+RYYG LPAVVELFAQA
Sbjct: 394 AYKHQMRDGQHAWQEATVDDLIPPVHVWHVRDVQDGGPLVNGLQRYYGKLPAVVELFAQA 453

Query: 302 GAKVSCDYTGLMRED 316
           GA V  +Y  +MRED
Sbjct: 454 GANVGENYVAMMRED 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735471|emb|CBI17911.3| unnamed protein product [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/315 (72%), Positives = 260/315 (82%), Gaps = 1/315 (0%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E  L PPENGLLVK L+P AH+V+AAR +L  CV+ V KS  IY+C LCGEVHVGHPP
Sbjct: 128 VSEITLRPPENGLLVKGLVPFAHEVYAARAKLFTCVSMVVKSTIIYSCRLCGEVHVGHPP 187

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           HKIRTCNV GS ASKEH W++G VEH+L  VESFHLYDR+GRAVSHNERLQVDQIPA+ E
Sbjct: 188 HKIRTCNVTGSPASKEHVWEIGGVEHVLPLVESFHLYDRLGRAVSHNERLQVDQIPAIVE 247

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LCIQAG+DIP+YPTRRR FP YN+AG++IDFE+RFPK D   + I  +GFW  R +SS E
Sbjct: 248 LCIQAGLDIPEYPTRRRTFPVYNVAGRMIDFERRFPKYDSPGKDINAYGFWEKRNQSS-E 306

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
           NKS+ + AD+ Q  A++GME W KM  G SKLMQKYAVQTCGYC EVQVGPKGHRVRNCQ
Sbjct: 307 NKSMHLLADDVQGFAIQGMEAWEKMWLGASKLMQKYAVQTCGYCSEVQVGPKGHRVRNCQ 366

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQA 301
           AYKHQMRDGQHAWQEATVDDL+PPV+VWHV+D + G PLVN L+RYYG LPAVVELFAQA
Sbjct: 367 AYKHQMRDGQHAWQEATVDDLIPPVHVWHVRDVQDGGPLVNGLQRYYGKLPAVVELFAQA 426

Query: 302 GAKVSCDYTGLMRED 316
           GA V  +Y  +MRED
Sbjct: 427 GANVGENYVAMMRED 441

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537256|ref|XP_003537145.1| PREDICTED: APO protein 3, mitochondrial-like [Glycine max]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/315 (70%), Positives = 257/315 (81%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E  L PPENGLLV+ LIP+AH+V+AAR EL++ V+R+   IAIYTCSLCGEVHVGHPP
Sbjct: 77  VHENKLQPPENGLLVEHLIPIAHEVYAARCELISTVSRLVNYIAIYTCSLCGEVHVGHPP 136

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           H+IRTC+V GS +SKEHSW  G VEH+L  VESFHLYDRIGRAVSHNE L+VD+IPA+ E
Sbjct: 137 HQIRTCDVRGSPSSKEHSWVKGGVEHVLPLVESFHLYDRIGRAVSHNEMLEVDRIPAIVE 196

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LCIQAG DIP+YPTRRR FP Y +AG++IDFEKRFPKE    E IE  GFW  +K+    
Sbjct: 197 LCIQAGFDIPEYPTRRRSFPVYCVAGRIIDFEKRFPKEISLGEDIEAHGFWFKKKRVDVN 256

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
             S+ + +D+ QA+AVRGM+ W KM  G SKLM+KYAVQTCGYCPEVQVGPKGHR RNCQ
Sbjct: 257 TNSMAMQSDDIQAIAVRGMKAWEKMHGGASKLMEKYAVQTCGYCPEVQVGPKGHRGRNCQ 316

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQA 301
           A+KHQMRDGQHAWQEA +DDL PPVYV+H++D +  KPLVNELK+YYGMLPAVVELFAQA
Sbjct: 317 AFKHQMRDGQHAWQEARIDDLAPPVYVFHIRDDQPRKPLVNELKKYYGMLPAVVELFAQA 376

Query: 302 GAKVSCDYTGLMRED 316
           GA V   Y  +MRED
Sbjct: 377 GAPVDKSYACMMRED 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436777|ref|XP_004136169.1| PREDICTED: APO protein 3, mitochondrial-like [Cucumis sativus] gi|449498560|ref|XP_004160570.1| PREDICTED: APO protein 3, mitochondrial-like [Cucumis sativus]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/315 (66%), Positives = 251/315 (79%), Gaps = 2/315 (0%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V+E  L PP NGLLVK L+PVAH+V+AA +ELL+CV+ V K   +Y C +CG+VH+G PP
Sbjct: 77  VEEISLKPPANGLLVKSLVPVAHEVYAAISELLSCVSTVIKRSVLYYCKVCGDVHIGDPP 136

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           HKIRTCNVAGS  +KEH+W++G ++H    VESFHLYDRIGRAVSHNE+L+VD+I A+ E
Sbjct: 137 HKIRTCNVAGSYPNKEHTWEIGGMQHAFPTVESFHLYDRIGRAVSHNEQLEVDRITALVE 196

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LC+QAG+DIP+YPTRRR  P YN+AG+ IDFEKRFPK     + I   GFW  RKKS ++
Sbjct: 197 LCVQAGVDIPEYPTRRRTCPIYNVAGRTIDFEKRFPKNFTMKKDINASGFWTERKKSRKD 256

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
             +I + +D+ +  AVRGM  W KM SG  KLM+KYAVQTCGYCPEVQVGPKGHRVRNC 
Sbjct: 257 --TISIRSDDLKVTAVRGMRLWDKMISGTEKLMEKYAVQTCGYCPEVQVGPKGHRVRNCY 314

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQA 301
           AYKHQMRDGQHAWQEATVDDL+PPVYVWHVQD  S KPL + LKRYYG+LPAVVELFAQA
Sbjct: 315 AYKHQMRDGQHAWQEATVDDLIPPVYVWHVQDVHSTKPLSDNLKRYYGVLPAVVELFAQA 374

Query: 302 GAKVSCDYTGLMRED 316
           GA     YT LM++D
Sbjct: 375 GADTPMRYTSLMKKD 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498611|ref|XP_003518143.1| PREDICTED: LOW QUALITY PROTEIN: APO protein 3, mitochondrial-like [Glycine max]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/315 (67%), Positives = 247/315 (78%), Gaps = 4/315 (1%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E  L PPENGLLV  LIP+AH+V+AAR EL++ V+ +    AIYTCSLCGEVHVGH P
Sbjct: 40  VHENTLQPPENGLLVDHLIPIAHEVYAARCELISSVSTLVNYTAIYTCSLCGEVHVGHAP 99

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           HKIRTC+V GS +SKEHSW    VEH+L  V+SFHLYDRIGRAVSHNE L+VD+IPA+ E
Sbjct: 100 HKIRTCDVRGSPSSKEHSWAKVGVEHVLPLVDSFHLYDRIGRAVSHNEMLEVDRIPAIVE 159

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LC+QAGI+IP+YPTRRR  P Y +AG++IDFEKRFPKE    E IE  GFW         
Sbjct: 160 LCVQAGINIPEYPTRRRSSPVYTVAGRIIDFEKRFPKEISLGEDIEAHGFW----LMDVN 215

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
             S+ + +D+ QA AVRGM+ W KMR G SKLM KYAVQTCGY PEVQVGPKGHRVRNCQ
Sbjct: 216 TNSMAMQSDDIQATAVRGMKAWEKMRGGASKLMGKYAVQTCGYYPEVQVGPKGHRVRNCQ 275

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQA 301
           A+KHQ+RDGQ AW  AT+DDL PPVYV+H++D +  KPLVNELKRYYGMLPAVVELFAQA
Sbjct: 276 AFKHQIRDGQRAWXGATIDDLAPPVYVYHIRDDQHRKPLVNELKRYYGMLPAVVELFAQA 335

Query: 302 GAKVSCDYTGLMRED 316
           GA V  +Y  +MRED
Sbjct: 336 GAPVDKNYASMMRED 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147861941|emb|CAN78766.1| hypothetical protein VITISV_044397 [Vitis vinifera]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/285 (72%), Positives = 236/285 (82%), Gaps = 1/285 (0%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E  L PPENGLLVK L+P AH+V+AAR +L  CV+ V KS  IY+C LCGEVHVGHPP
Sbjct: 465 VSEITLRPPENGLLVKGLVPFAHEVYAARAKLFTCVSMVVKSTIIYSCRLCGEVHVGHPP 524

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           HKIRTCNV GS ASKEH W++G VEH+L  VESFHLYDR+GRAVSHNERLQVDQIPA+ E
Sbjct: 525 HKIRTCNVTGSPASKEHVWEIGGVEHVLPLVESFHLYDRLGRAVSHNERLQVDQIPAIVE 584

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEE 181
           LCIQAG+DIP+YPTRRR FP YN+AG++IDFE+RFPK D   + I  +GFW  R +SS E
Sbjct: 585 LCIQAGLDIPEYPTRRRTFPVYNVAGRMIDFERRFPKYDSPGKDINXYGFWEKRNQSS-E 643

Query: 182 NKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQ 241
           NKS+ + AD+ Q  A++GME W KM  G SKLMQKYAVQTCGYC EVQVGPKGHRVRNCQ
Sbjct: 644 NKSMHLLADDVQGFAIQGMEAWEKMWLGASKLMQKYAVQTCGYCSEVQVGPKGHRVRNCQ 703

Query: 242 AYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKR 286
           AYKHQMRDGQHAWQEATVDDL+PPV+VWHV+D + G PLVN L+R
Sbjct: 704 AYKHQMRDGQHAWQEATVDDLIPPVHVWHVRDVQDGGPLVNGLQR 748

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294461147|gb|ADE76138.1| unknown [Picea sitchensis]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 170/319 (53%), Positives = 226/319 (70%), Gaps = 6/319 (1%)

Query: 2   VKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPP 61
           V E++L  PENGLLV+ L+PVAH V+ A+T L   V ++   I +  C  C EVH+G   
Sbjct: 113 VTERVLQRPENGLLVRRLVPVAHQVYQAKTALYEGVAKLVDVIPVQACRNCSEVHIGSQG 172

Query: 62  HKIRTCNVAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNE 121
           H+++TC    S +SK+H W+ G V+ IL  VESFHLYDR+GRAV+H ER  VD++PA+ E
Sbjct: 173 HQLKTCEGPMSCSSKKHVWRKGTVDDILVTVESFHLYDRVGRAVTHKERFMVDRLPAIIE 232

Query: 122 LCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSS----EGIETFGFWGNRKK 177
           LCIQAG+D+P +PT+RR +P Y +AGK++DFEK  P +D +S    E  E+  FW ++K+
Sbjct: 233 LCIQAGLDLPDFPTKRRAYPVYMVAGKIVDFEKCSPPKDSNSMDVDEDFESRDFWDSKKQ 292

Query: 178 SSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRV 237
              +   +   A++ Q +A + +E W  M+SG  KLM+KYAV+TC YCPEVQVGPKGHR 
Sbjct: 293 PKRDESPLS-TAEDIQRMAQQTLEAWEDMKSGARKLMEKYAVKTCAYCPEVQVGPKGHRA 351

Query: 238 RNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVEL 297
           R CQA+KHQ RDGQH WQEAT DDL+PP YVWHV+DP +G PL N++++YYGM PAVVEL
Sbjct: 352 RICQAHKHQWRDGQHGWQEATFDDLIPPKYVWHVRDP-NGPPLENKMRKYYGMAPAVVEL 410

Query: 298 FAQAGAKVSCDYTGLMRED 316
             Q GA V  +Y  +MR D
Sbjct: 411 CVQGGATVPDEYKSMMRLD 429

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134160|ref|XP_002321751.1| predicted protein [Populus trichocarpa] gi|222868747|gb|EEF05878.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/311 (49%), Positives = 210/311 (67%), Gaps = 10/311 (3%)

Query: 8   GPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTC 67
            PP+NGLLV +L+PVA+ V+ AR  LL+ V+++ K I +  C  C E+H+GH  H+IRTC
Sbjct: 25  NPPDNGLLVPQLVPVAYQVYEAREVLLSGVSKLVKVIPVQKCRFCHELHIGHVGHEIRTC 84

Query: 68  NVAGS-LASKEHSWKLGNVEHILSHVESFHLYDRIGRA-VSHNERLQVDQIPAVNELCIQ 125
              GS + S  H W+ G V  ++   +S+HLYDR+G+  V H+E  +V +IPA+ ELCIQ
Sbjct: 85  TGPGSGMRSSTHVWRKGRVHDVVFSPKSYHLYDRVGKPRVVHDESRRVPRIPAIVELCIQ 144

Query: 126 AGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSI 185
           AG+D+ ++PT+RR  P Y++ G+++DFE     + + ++  E   F  +++    E    
Sbjct: 145 AGVDLEKHPTKRRTKPVYSIEGRIVDFE-----QAKENDENEPRNFILDKETDQLEESHE 199

Query: 186 DVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKH 245
            V   + + +++  ME+W KM SG  K+M+KY V TCGYCPEVQVGPKGH+VR C+A KH
Sbjct: 200 GVT--DLREISIGTMESWFKMISGAKKIMEKYGVLTCGYCPEVQVGPKGHKVRMCKATKH 257

Query: 246 QMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKV 305
           Q RDG HAWQEAT+DDLV P YVWHV+D  +G PL N+LKRYYG  PAVVEL  QAGA V
Sbjct: 258 QHRDGLHAWQEATIDDLVAPNYVWHVRD-TNGLPLDNKLKRYYGKAPAVVELCVQAGAPV 316

Query: 306 SCDYTGLMRED 316
              Y  +MR D
Sbjct: 317 PDQYRSMMRLD 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540051|ref|XP_002511090.1| translation factor sui1, putative [Ricinus communis] gi|223550205|gb|EEF51692.1| translation factor sui1, putative [Ricinus communis]

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 157/316 (49%), Positives = 209/316 (66%), Gaps = 10/316 (3%)

Query: 9   PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCN 68
           PP+NGLLV EL+ VAH V+ AR  LL  ++++ K + +  C  C EVH+GH  H+IRTC 
Sbjct: 88  PPDNGLLVPELVEVAHRVYRARQSLLFGLSKLVKVVPVQRCRFCSEVHIGHVGHEIRTCT 147

Query: 69  VAGS-LASKEHSWKLGNVEHILSHVESFHLYDRIGRA-VSHNERLQVDQIPAVNELCIQA 126
             GS   +  H W+ G V  ++   + FHLYDR+G+  V H+ER  V +IPA+ ELCIQA
Sbjct: 148 GPGSGKRTATHVWREGGVHDVVFFPKCFHLYDRVGKPRVGHDERHSVPRIPAILELCIQA 207

Query: 127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRS----SEGIETFGFW--GNRKKSSE 180
           G+++ ++PTRRR  P Y++ G+++DFE+   K D S    SE I+    +  G R     
Sbjct: 208 GVNLDKFPTRRRTKPVYSIEGRIVDFEQVANKYDMSEKFHSENIDPLVDYSSGTRDDKVT 267

Query: 181 ENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNC 240
            +  ++V ++E   V++  ME+W +M SG   +M+KY+V TCGYCPEVQVGPKGH+VR C
Sbjct: 268 THLKLEV-SNELGDVSIGTMESWFEMISGAKNIMEKYSVLTCGYCPEVQVGPKGHKVRMC 326

Query: 241 QAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQ 300
           +  KHQ RDGQHAWQEAT++DLV P YVWHVQD  +G PL N LKRYYG  PAVVEL   
Sbjct: 327 KGTKHQARDGQHAWQEATIEDLVGPNYVWHVQD-VNGPPLDNNLKRYYGKAPAVVELCVH 385

Query: 301 AGAKVSCDYTGLMRED 316
           AGA V   Y  +MR D
Sbjct: 386 AGAPVPDQYRSMMRLD 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2156151	402	APO3 "ACCUMULATION OF PHOTOSYS	0.943	0.741	0.474	4e-74
TAIR|locus:2010906	460	APO1 "ACCUMULATION OF PHOTOSYS	0.977	0.671	0.410	6e-64
TAIR|locus:2093069	337	APO4 "AT3G21740" [Arabidopsis	0.436	0.409	0.375	1.6e-43

TAIR|locus:2156151 APO3 "ACCUMULATION OF PHOTOSYSTEM ONE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 148/312 (47%), Positives = 199/312 (63%)

Query:     9 PPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCN 68
             PP+NGLLV EL+ VAH V   R  LL+ ++++   + ++ C LC EVH+G   H+IRTC 
Sbjct:    88 PPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCT 147

Query:    69 VAGSLA-SKEHSWKLGNVEHILSHVESFHLYDR-IGRAVSHNERLQVDQIPAVNELCIQA 126
               GS + S  H WK G V  ++   + FHLYDR +   V H+ER  V +I AV ELCIQA
Sbjct:   148 GPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQA 207

Query:   127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSE--GIETFGFWGNRKKSSEENKS 184
             G+D+ ++P++RR  P Y++ G+++DFE      D +SE     T        +  EE KS
Sbjct:   208 GVDLEKFPSKRRSKPVYSIEGRIVDFED---VNDGNSELAVTSTTTLIQEDDRCKEEKKS 264

Query:   185 IDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYK 244
             +       + ++   ME+W +M  G+ KLM++Y V TCGYCPE+QVGPKGH+VR C+A K
Sbjct:   265 L-------KELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATK 317

Query:   245 HQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAK 304
             HQMRDG HAWQEAT+DD+V P YVWHV+DP  G  L N LKR+YG  PAV+E+  Q GA 
Sbjct:   318 HQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAP 377

Query:   305 VSCDYTGLMRED 316
             V   Y  +MR D
Sbjct:   378 VPDQYNSMMRLD 389

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010906 APO1 "ACCUMULATION OF PHOTOSYSTEM ONE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 130/317 (41%), Positives = 187/317 (58%)

Query:     4 EKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHK 63
             EK L PP+NGLLV  L+PVA  V      L+  + ++   + ++ CS CG VHV +  H 
Sbjct:   135 EKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHN 194

Query:    64 IRTCN-VAGSLASKEHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNEL 122
             IR CN    S     HSW  G +  +L  VES+H+YD  GR + H  R + ++IPA+ EL
Sbjct:   195 IRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVEL 254

Query:   123 CIQAGIDIPQYPTRRRVFPAYNLAGKVID---FEKRFPKEDRSSEGIETFGFWGNRKKSS 179
             CIQAG++IP+YP RRR  P   +  +VID   + K  P++ ++S  + +           
Sbjct:   255 CIQAGVEIPEYPCRRRTQPIRMMGKRVIDRGGYHKE-PEKPQTSSSLSSP--LAELDTLG 311

Query:   180 EENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRN 239
                +      ++   +A   M+ + K+R G++KLM+K+ V+ CGYC EV VGP GH V+ 
Sbjct:   312 VFERYPPPTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKL 371

Query:   240 CQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFA 299
             C  +KHQ RDG+H WQ+A VD++ PP YVWHV+D K G PL   L+R+YG  PA+VE+  
Sbjct:   372 CGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLK-GNPLTGNLRRFYGKAPALVEICM 430

Query:   300 QAGAKVSCDYTGLMRED 316
              +GA+V   Y  +MR D
Sbjct:   431 HSGARVPQRYKAMMRLD 447

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2093069 APO4 "AT3G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 53/141 (37%), Positives = 79/141 (56%)

Query:   174 NRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPK 233
             N + S E+ +S+   A + + V    +  W K+R+G+ KL+  Y  + C  C EV VGP 
Sbjct:   183 NPQISEEDIRSLP--AGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPS 240

Query:   234 GHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPA 293
             GH+ R C  +K++   G H W++A V+DLVP   VWH + P+    LV+E + YYG  PA
Sbjct:   241 GHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWH-RRPQDPVVLVDEGRSYYGHAPA 299

Query:   294 VVELFAQAGAKVSCDYTGLMR 314
             +V L +  GA V   Y   M+
Sbjct:   300 IVSLCSHTGAIVPVKYACKMK 320

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006791001 SubName- Full=Chromosome chr11 scaffold_177, whole genome shotgun sequence; (402 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN00111	399	PLN00111, PLN00111, accumulation of photosystem on	1e-161
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	1e-50
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	3e-20

>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional

 Score =  454 bits (1170), Expect = e-161
 Identities = 166/317 (52%), Positives = 210/317 (66%), Gaps = 6/317 (1%)

Query: 1   MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHP 60
           +  E+ L PP+NGLLVK L+PVAH+V+ AR  L++ V+++ K + ++ C  C EVHVG  
Sbjct: 75  LQPERPLDPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKV 134

Query: 61  PHKIRTCNVAGSLASK-EHSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAV 119
            H IRTC   GS A    H W  G+VE +L  VES+HLYDR G+ + H+ER  V +IPA+
Sbjct: 135 GHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRIKHDERFDVPRIPAI 194

Query: 120 NELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSS 179
            ELCIQAG+DIP+YPT+RR  P Y + G+++DFE    + D   EG  +           
Sbjct: 195 VELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEI 254

Query: 180 EENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRN 239
           E   S     +E + +A   +E W K+RSG+ KLM+KY V+ CGYCPEV VGP GH+VR 
Sbjct: 255 EAPSS----EEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRL 310

Query: 240 CQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFA 299
           C A+KHQ RDGQH WQEATVDDLVPP YVWHV+D   G PLVNEL+RYYG  PAVVEL  
Sbjct: 311 CGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQD-GPPLVNELRRYYGKAPAVVELCV 369

Query: 300 QAGAKVSCDYTGLMRED 316
           QAGA V   Y  +MR D
Sbjct: 370 QAGAIVPDKYKSMMRLD 386

Length = 399

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  166 bits (421), Expect = 1e-50
 Identities = 72/152 (47%), Positives = 101/152 (66%), Gaps = 1/152 (0%)

Query: 1   MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHP 60
           M   ++L PP+NGLLVKEL+PVA +V  AR  L+  ++R+ K + ++ C  C EVHVG  
Sbjct: 56  MKPCRVLYPPKNGLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKV 115

Query: 61  PHKIRTCNVAGSLASKE-HSWKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAV 119
            H+IRTC   GS      H W  G +  +L  VES+HLYDR G+ + H+ER  V ++PAV
Sbjct: 116 GHEIRTCKGPGSSQRNGLHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAV 175

Query: 120 NELCIQAGIDIPQYPTRRRVFPAYNLAGKVID 151
            ELCIQAG+DIP+YP +RR  P Y++  +++D
Sbjct: 176 LELCIQAGVDIPEYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score = 86.8 bits (215), Expect = 3e-20
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 195 VAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAW 254
           VA         +  G+S+L++   V  C +CPEV VG  GH +R C+      R+G H W
Sbjct: 77  VAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEIRTCKGPGSSQRNGLHEW 136

Query: 255 QEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKV 305
              T++D++ PV  +H+ D   GK + ++ +     +PAV+EL  QAG  +
Sbjct: 137 VPGTINDVLVPVESYHLYDR-FGKRIKHDERFDVPRVPAVLELCIQAGVDI 186

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PLN00111	399	accumulation of photosystem one; Provisional	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PLN00111	399	accumulation of photosystem one; Provisional	100.0

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=2.5e-135  Score=981.25  Aligned_cols=311  Identities=53%  Similarity=0.946  Sum_probs=285.6

Q ss_pred             CCCCccCCCCCCCccccchhhhHHHHHHHHHHHHHHHHhhcceeeeccCCCCCceeecCCCccccccccCCCCC-Ccccc
Q 041820            1 MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLA-SKEHS   79 (316)
Q Consensus         1 ~~~~~~l~pP~NGllV~~LipvA~~V~~ar~~Li~gv~~L~~vvpV~~C~~C~EvhVG~~gH~i~tC~g~~~~~-~~~H~   79 (316)
                      ++|+|+|+||+|||||++||||||+||+||+.|++||++||+++||++|+||+|||||++||+||||+|+++++ ++.|+
T Consensus        75 ~~~~~~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~  154 (399)
T PLN00111         75 LQPERPLDPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHE  154 (399)
T ss_pred             cCCCccCCCCccCccccccHHHHHHHHHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             cccccccceeecccceeehhccCCcccccccccCCCchhHHHHHHHhCCCCCCCCcccccccccccCCeeecccccCCCC
Q 041820           80 WKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKE  159 (316)
Q Consensus        80 W~~g~v~dvlvpve~fHL~dr~g~~I~H~eRf~~~RIPAivELCiQAGvdipeyptkrr~~Pi~~i~~r~~d~~~~~~~~  159 (316)
                      |++|+|||||+|+|+||||||+|++|+|+|||+|||||||||||||||||+|||||+||++||++|+|+++|||++.+++
T Consensus       155 W~~g~v~Dvl~P~e~~Hl~D~~g~~i~h~~Rf~y~riPAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~  234 (399)
T PLN00111        155 WIPGSVEDVLVPVESYHLYDRFGKRIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEP  234 (399)
T ss_pred             cccccccceeccceeeEeccCCCcccccccccccCcccHHHHHHHHcCCCCCcccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999944432


Q ss_pred             CCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcceeccccCCCCceeecCCCccccc
Q 041820          160 DRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRN  239 (316)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~  239 (316)
                      ++.....+....++. ..+   ....+.+++||++||++||+||++|++||+|||++|||++|||||||||||+||++||
T Consensus       235 ~~~~~~~~~~~~~e~-~~~---~~~~~~~~~~l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~  310 (399)
T PLN00111        235 DPPPEGPSSPLLTEL-DDS---EIEAPSSEEELKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRL  310 (399)
T ss_pred             ccccccccccccccc-ccc---cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeee
Confidence            222211111111110 000   0111237789999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccchhhhcCCcchhHHHHHhcCCCCCccCcccccCC
Q 041820          240 CQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKRYYGMLPAVVELFAQAGAKVSCDYTGLMRED  316 (316)
Q Consensus       240 C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~R~~ygr~PAVVELCiQAGa~vP~~Y~~mMRlD  316 (316)
                      |+|||||+|||+|+||+|+|||||||+||||++|++| ++|.|++||||||||||||||+||||++|++|+||||+|
T Consensus       311 C~~~k~q~r~g~H~Wq~a~vdDlvpP~~vwH~~d~~~-~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRld  386 (399)
T PLN00111        311 CGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQDG-PPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLD  386 (399)
T ss_pred             cCCchhcccCCcccccccccccccCCceeEecCCCCC-CcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhcc
Confidence            9999999999999999999999999999999999998 999999999999999999999999999999999999998

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=5.7e-72  Score=503.82  Aligned_cols=151  Identities=46%  Similarity=0.821  Sum_probs=149.5

Q ss_pred             CCCCccCCCCCCCccccchhhhHHHHHHHHHHHHHHHHhhcceeeeccCCCCCceeecCCCccccccccCCCCC-Ccccc
Q 041820            1 MVKEKILGPPENGLLVKELIPVAHDVFAARTELLACVTRVAKSIAIYTCSLCGEVHVGHPPHKIRTCNVAGSLA-SKEHS   79 (316)
Q Consensus         1 ~~~~~~l~pP~NGllV~~LipvA~~V~~ar~~Li~gv~~L~~vvpV~~C~~C~EvhVG~~gH~i~tC~g~~~~~-~~~H~   79 (316)
                      ++|+|+|+||+|||||++||||||+||+||++|++||++||+++||++|+||+|||||++||+||||.|+++.+ +|.|+
T Consensus        53 ~~p~r~l~pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~  132 (204)
T PF05634_consen   53 GQPERPLYPPKNGLLVKELVPVAYEVLEAWETLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHE  132 (204)
T ss_pred             cCCCCCCCCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             cccccccceeecccceeehhccCCcccccccccCCCchhHHHHHHHhCCCCCCCCcccccccccccCCeeec
Q 041820           80 WKLGNVEHILSHVESFHLYDRIGRAVSHNERLQVDQIPAVNELCIQAGIDIPQYPTRRRVFPAYNLAGKVID  151 (316)
Q Consensus        80 W~~g~v~dvlvpve~fHL~dr~g~~I~H~eRf~~~RIPAivELCiQAGvdipeyptkrr~~Pi~~i~~r~~d  151 (316)
                      |++|+|||||+|+|+|||||++|++|+|++||+|+|||||||||||||+|+|+|||+||++|||+|+||++|
T Consensus       133 W~~a~vdDvl~P~~~~Hl~D~~g~~i~he~R~~y~riPAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd  204 (204)
T PF05634_consen  133 WQKATVDDVLPPVEVWHLRDRFGPRIKHEERFYYGRIPAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD  204 (204)
T ss_pred             ceecccccccCCceeEEecCCCCCccccccccccCccchHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=3e-63  Score=447.30  Aligned_cols=175  Identities=39%  Similarity=0.698  Sum_probs=150.5

Q ss_pred             CCCCCCCCcccccccccccCCeeecccccCCCCCCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHHHH
Q 041820          127 GIDIPQYPTRRRVFPAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWGKM  206 (316)
Q Consensus       127 Gvdipeyptkrr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~~L  206 (316)
                      -+|+|.-..|+..||-.++-++++-.+.++-+...         . .+++...+..|  -+++++|++||++||+||++|
T Consensus        18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are~~k~~~---------~-~p~r~l~pP~N--GllV~~LvpvA~ev~~A~~~L   85 (204)
T PF05634_consen   18 NADLPRPLPKSEKKPYPTPIKELIRRAREERKARQ---------G-QPERPLYPPKN--GLLVKELVPVAYEVLEAWETL   85 (204)
T ss_pred             cccCCCcCCccccCCCCccHHHHHHHHHHHHHHhh---------c-CCCCCCCCCcc--CccHHHHHHHHHHHHHHHHHH
Confidence            36898888899999988888877766653221000         0 01111111111  257899999999999999999


Q ss_pred             HHHHHHHhcceeccccCCCCceeecCCCcccccccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccchhh
Q 041820          207 RSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNELKR  286 (316)
Q Consensus       207 ~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~R~  286 (316)
                      ++||+|||++|||++|+||||||||++||++|||+|+||++|||+|+|++|+|||||||+|||||+|++| ++|.||+||
T Consensus        86 ~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g-~~i~he~R~  164 (204)
T PF05634_consen   86 ISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFG-PRIKHEERF  164 (204)
T ss_pred             HHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCC-Ccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             hcCCcchhHHHHHhcCCCCCccCcccccC
Q 041820          287 YYGMLPAVVELFAQAGAKVSCDYTGLMRE  315 (316)
Q Consensus       287 ~ygr~PAVVELCiQAGa~vP~~Y~~mMRl  315 (316)
                      |||||||||||||||||++| +|.+|||.
T Consensus       165 ~y~riPAVVELCiQAGa~vP-eypt~rR~  192 (204)
T PF05634_consen  165 YYGRIPAVVELCIQAGADVP-EYPTKRRT  192 (204)
T ss_pred             ccCccchHHHHHHhhCCcCC-cccccccc
Confidence            99999999999999999999 69999985

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=7e-56  Score=429.10  Aligned_cols=169  Identities=26%  Similarity=0.422  Sum_probs=142.3

Q ss_pred             CCCCCCCCcccccc--cccccCCeeecccccCCCCCCCCccccccCccCCCcCCCCccccCCCCchhhHHHHHHHHHHHH
Q 041820          127 GIDIPQYPTRRRVF--PAYNLAGKVIDFEKRFPKEDRSSEGIETFGFWGNRKKSSEENKSIDVNADEAQAVAVRGMETWG  204 (316)
Q Consensus       127 Gvdipeyptkrr~~--Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL~~vA~~vl~Aw~  204 (316)
                      -+|+|++.+|+..|  |+-++..++-.++++.+....+.            +...+..|  -+++++|++||++||+||+
T Consensus        40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~------------~~l~pP~N--GllV~~LvpvA~ev~~A~~  105 (399)
T PLN00111         40 NADLPRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPE------------RPLDPPKN--GLLVKRLVPVAHEVYKARK  105 (399)
T ss_pred             ccccCCCCCchhcCCCCccHHHHHHHHHHHhhhhhcCCC------------ccCCCCcc--CccccccHHHHHHHHHHHH
Confidence            46899888877666  55666666665555332111111            11111112  3688999999999999999


Q ss_pred             HHHHHHHHHhcceeccccCCCCceeecCCCcccccccCCccccccccccceecccCcccCCCeeEeecCCCCCCccccch
Q 041820          205 KMRSGISKLMQKYAVQTCGYCPEVQVGPKGHRVRNCQAYKHQMRDGQHAWQEATVDDLVPPVYVWHVQDPKSGKPLVNEL  284 (316)
Q Consensus       205 ~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~~~R~g~H~W~~a~vdDvv~P~~v~Hl~d~~g~~~l~he~  284 (316)
                      .|++||+|||++|||++|+||||||||++||+||||+|+||++|||+|+|++|+|||||+|+|+|||+|++| ++|.|++
T Consensus       106 ~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g-~~i~h~~  184 (399)
T PLN00111        106 LLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFG-KRIKHDE  184 (399)
T ss_pred             HHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCC-ccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998 8999999


Q ss_pred             hhhcCCcchhHHHHHhcCCCCCccCcc
Q 041820          285 KRYYGMLPAVVELFAQAGAKVSCDYTG  311 (316)
Q Consensus       285 R~~ygr~PAVVELCiQAGa~vP~~Y~~  311 (316)
                      ||+||||||||||||||||++| +|..
T Consensus       185 Rf~y~riPAVvELCiQAGa~vP-eyp~  210 (399)
T PLN00111        185 RFDVPRIPAIVELCIQAGVDIP-EYPT  210 (399)
T ss_pred             ccccCcccHHHHHHHHcCCCCC-cccc
Confidence            9999999999999999999999 5643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00