Citrus Sinensis ID: 041860

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MAPKLRTSSKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWREGEPAGAG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcccccHHHHHHHHHHHHHHHHHcHccccccccccccccccEEEEEEccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mapklrtsskiikksgIVKLKIAVEKIHKSLlmgrksnsycddyvpqdvkegHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEygfdhegaltipcrpsELERILAERWregepagag
Flexible Loop (DISEMBL)
mapklrtsskiikksgivklkIAVEKIHKsllmgrksnsYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAErwregepagag
Low Complexity Region (SEG)
MAPKLRTsskiikksgivklkiAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWREGEPAGAG
Disordered region (IsUnstruct)
**********IIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILA************
Disordered Region (DISOPRED)
*********************IAV*************************KEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILA************
Disordered Region (DISEMBL)
********SKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWR********
Disordered Region (DISPRO)
***********IKKSGIVKLKIAVEKIHKSLLMGR*********VPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKLRTSSKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWREGEPAGAG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
P33082	82	Auxin-induced protein X15	no	no	0.491	0.743	0.484	3e-09
P33079	93	Auxin-induced protein 10A	no	no	0.508	0.677	0.469	4e-09
P33081	82	Auxin-induced protein 15A	no	no	0.427	0.646	0.535	1e-08
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.508	0.684	0.454	2e-08
P33083	90	Auxin-induced protein 6B	no	no	0.508	0.7	0.454	2e-08
P33080	92	Auxin-induced protein X10	no	no	0.467	0.630	0.459	3e-08

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPCRPSE 106
           D  +G+ AV    G + KRFVI +SY+  P F  LL QA EE+G+DH  G LTIPC    
Sbjct: 16  DAPKGYLAVYV--GEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEV 73

Query: 107 LERI 110
            +RI
Sbjct: 74  FQRI 77

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPCRPSE 106
           DV +G+ AV    G + +RF I +SYL  P F  LL QA EE+G+DH  G LTIPC+  E
Sbjct: 25  DVPKGYAAVYV--GDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 82

Query: 107 LERILA 112
              + A
Sbjct: 83  FLNVTA 88

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPC 102
           D  +G+ AV    G + KRFVI +SYL  P F  LL QA EE+G+DH  G LTIPC
Sbjct: 16  DAPKGYLAVYV--GEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPCRPSE 106
           D  +G+ AV    G   KRFVI +S+L  P+F  LL QA EE+G+DH  G LTIPC    
Sbjct: 24  DAPKGYLAVYV--GENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDL 81

Query: 107 LERILA 112
            + I +
Sbjct: 82  FQHITS 87

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDH-EGALTIPCRPSE 106
           DV++G+ AV    G + +RFVI +SYL  P F  LL QA EE+G+ H  G LTIPC    
Sbjct: 24  DVEKGYLAVYV--GEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDV 81

Query: 107 LERILA 112
            + I +
Sbjct: 82  FQHITS 87

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 48  DVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPCRPSE 106
           +V +G+  V    G + +RF+I +SYL  P F  LL QA EE+G+DH  G LTIPC+  E
Sbjct: 24  EVPKGYLVVYV--GDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDE 81

Query: 107 L 107
            
Sbjct: 82  F 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
225436518	143	PREDICTED: uncharacterized protein LOC10	0.903	0.783	0.694	2e-39
225436516	143	PREDICTED: uncharacterized protein LOC10	0.943	0.818	0.661	4e-39
449459104	143	PREDICTED: uncharacterized protein LOC10	0.854	0.741	0.635	5e-34
449456156	135	PREDICTED: uncharacterized protein LOC10	0.806	0.740	0.669	4e-33
297734931	102	unnamed protein product [Vitis vinifera]	0.604	0.735	0.813	2e-30
356541940	136	PREDICTED: auxin-induced protein 6B-like	0.895	0.816	0.614	7e-30
358348025	131	Auxin-induced protein-like protein [Medi	0.887	0.839	0.538	3e-26
297822467	109	hypothetical protein ARALYDRAFT_481702 [	0.806	0.917	0.584	2e-24
18401625	124	SAUR-like auxin-responsive protein [Arab	0.830	0.830	0.568	2e-24
116831123	125	unknown [Arabidopsis thaliana]	0.830	0.824	0.568	2e-24

>gi|225436518|ref|XP_002273631.1| PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 98/121 (80%), Gaps = 9/121 (7%)

Query: 4   KLRTSSKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDD--------YVPQDVKEGHFA 55
           K R++S   KK+GIV+LKI VEK+ KSL +G+KS S  DD        YVP DVKEGHFA
Sbjct: 3   KFRSNSAK-KKNGIVRLKIVVEKLQKSLSLGKKSASDYDDLEEVIDSAYVPPDVKEGHFA 61

Query: 56  VIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERW 115
           VIAVDG + KRFV+ L++LTHP FLRLLEQAAEEYGFDHEGALTIPCRPSELER+LAE+W
Sbjct: 62  VIAVDGQEPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIPCRPSELERLLAEQW 121

Query: 116 R 116
           +
Sbjct: 122 K 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436516|ref|XP_002273603.1| PREDICTED: uncharacterized protein LOC100244862 [Vitis vinifera] gi|297734930|emb|CBI17164.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 98/127 (77%), Gaps = 10/127 (7%)

Query: 6   RTSSKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDD--------YVPQDVKEGHFAVI 57
           RTS K  +K+GIVKLKI VEK+ KSLL+GRKS    D+        YVP DVKEGHFAVI
Sbjct: 6   RTSGK--RKNGIVKLKIVVEKLQKSLLLGRKSACENDEFKDVSDSTYVPADVKEGHFAVI 63

Query: 58  AVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWRE 117
           AVD  + KRFV+ L++LTHP FL+LLEQAAEEYGFDHEGALTIPCRPSELE ILAE+W++
Sbjct: 64  AVDDDEPKRFVVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESILAEQWQK 123

Query: 118 GEPAGAG 124
              +  G
Sbjct: 124 ERDSSVG 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459104|ref|XP_004147286.1| PREDICTED: uncharacterized protein LOC101219191 [Cucumis sativus] gi|449520541|ref|XP_004167292.1| PREDICTED: uncharacterized LOC101219191 [Cucumis sativus]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 91/118 (77%), Gaps = 12/118 (10%)

Query: 9   SKIIKKSGIVKLKIAVEKIHKSLLMGRK--SNSYCDDY--------VPQDVKEGHFAVIA 58
           SK +KK     +K+ VEK+ KSL  GRK  +  Y +D+        VP+DVKEGHFAV+A
Sbjct: 4   SKTMKKKN--SIKVVVEKLQKSLSRGRKPINGHYNEDFDELVDSTAVPEDVKEGHFAVVA 61

Query: 59  VDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWR 116
           VDG + KRFV+ LS LTHPMFLRLLEQAAEEYGFDHEGALTIPC+PSE+E+ILAE+W+
Sbjct: 62  VDGKEPKRFVVPLSCLTHPMFLRLLEQAAEEYGFDHEGALTIPCQPSEVEKILAEQWK 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456156|ref|XP_004145816.1| PREDICTED: uncharacterized protein LOC101212725 [Cucumis sativus] gi|449526341|ref|XP_004170172.1| PREDICTED: uncharacterized protein LOC101223908 [Cucumis sativus]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 87/112 (77%), Gaps = 12/112 (10%)

Query: 13  KKSGIVKLKIAVEKIHKSLLMGRKSNSYCD--DY----------VPQDVKEGHFAVIAVD 60
           KK+GIVKLK AV K+ +SL +GR+S+S  D  DY          VP+DVKEGHFAV+AVD
Sbjct: 10  KKNGIVKLKTAVGKLQRSLSLGRRSDSGQDECDYAVGDDESSTPVPEDVKEGHFAVVAVD 69

Query: 61  GHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILA 112
             + KRFV+ LS LT+P FLRLLE AAEEYGFDHEGALT+PCRPSELERILA
Sbjct: 70  AEEPKRFVVPLSCLTNPTFLRLLEAAAEEYGFDHEGALTVPCRPSELERILA 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734931|emb|CBI17165.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 69/75 (92%)

Query: 42  DDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIP 101
           + YVP DVKEGHFAVIAVDG + KRFV+ L++LTHP FLRLLEQAAEEYGFDHEGALTIP
Sbjct: 7   NTYVPPDVKEGHFAVIAVDGQEPKRFVVPLNFLTHPPFLRLLEQAAEEYGFDHEGALTIP 66

Query: 102 CRPSELERILAERWR 116
           CRPSELER+LAE+W+
Sbjct: 67  CRPSELERLLAEQWK 81

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541940|ref|XP_003539430.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 89/122 (72%), Gaps = 11/122 (9%)

Query: 5   LRTSSKIIKKS---GIVKLKIAVEKIHKSLLMGRKSNSYCDD----YVPQDVKEGHFAVI 57
           +R SSK  KKS   GIVK K  VEK+ K L++  ++   CD     YVP+DVKEGHFAVI
Sbjct: 7   VRNSSK--KKSVVGGIVKFKFVVEKLQKRLILLGRNKEGCDSSNSSYVPEDVKEGHFAVI 64

Query: 58  AVDG-HQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERI-LAERW 115
           A  G  +QKRFV+ LS LT+P FL+LLEQA EEYGFDHEGA+TIPCRP ELERI LA +W
Sbjct: 65  AEGGGEEQKRFVLPLSCLTNPTFLKLLEQAEEEYGFDHEGAVTIPCRPCELERILLAHQW 124

Query: 116 RE 117
            +
Sbjct: 125 HQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348025|ref|XP_003638050.1| Auxin-induced protein-like protein [Medicago truncatula] gi|355503985|gb|AES85188.1| Auxin-induced protein-like protein [Medicago truncatula]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 85/117 (72%), Gaps = 7/117 (5%)

Query: 5   LRTSSKIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQ 64
           +R+ +K     GIVKL   +EK+ K +++GR  N     YVP+DVKEGHFAVIA    ++
Sbjct: 6   VRSINKKNGGGGIVKL---IEKLQKKIVIGR--NKSTSTYVPEDVKEGHFAVIAKGRKEE 60

Query: 65  --KRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWREGE 119
             KRFV+ LS LT+P F+RLLE+  EEYGFDHEGALTIPC+PSEL ++L ++W++ E
Sbjct: 61  EAKRFVLPLSCLTNPTFVRLLEKTEEEYGFDHEGALTIPCKPSELHKMLQQQWQKQE 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822467|ref|XP_002879116.1| hypothetical protein ARALYDRAFT_481702 [Arabidopsis lyrata subsp. lyrata] gi|297324955|gb|EFH55375.1| hypothetical protein ARALYDRAFT_481702 [Arabidopsis lyrata subsp. lyrata]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 6/106 (5%)

Query: 16  GIVKLKIAVEKIH--KSLLMGRK--SNSYCDDYVPQDVKEGHFAVIAVDGHQQ--KRFVI 69
           GIVKLK  VE++   K     +K  S  Y  D VP+DVKEGHFAVIAVDG+ +  +RFV+
Sbjct: 3   GIVKLKNVVERLVQIKGFSSTKKPCSEEYSRDCVPKDVKEGHFAVIAVDGYHEPTQRFVV 62

Query: 70  SLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERW 115
            L +L HPMF +LLEQA EEYGF H+GAL +PCRPS L  IL E+W
Sbjct: 63  PLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQW 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401625|ref|NP_565665.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|20197467|gb|AAM15087.1| Expressed protein [Arabidopsis thaliana] gi|91806281|gb|ABE65868.1| auxin-responsive family protein [Arabidopsis thaliana] gi|330252983|gb|AEC08077.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 75/109 (68%), Gaps = 6/109 (5%)

Query: 13  KKSGIVKLKIAVEKIH--KSLLMGRKS--NSYCDDYVPQDVKEGHFAVIAVDGHQQ--KR 66
           K  GIVKLK  VE++   K     +K     Y  D VP+DVKEGHFAVIAVDG+ +  +R
Sbjct: 15  KMGGIVKLKNVVERLVQIKGFSSAKKPCPEEYGRDCVPKDVKEGHFAVIAVDGYHEPTQR 74

Query: 67  FVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERW 115
           FV+ L +L HPMF +LLEQA EEYGF H+GAL +PCRPS L  IL E+W
Sbjct: 75  FVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQW 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831123|gb|ABK28516.1| unknown [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 75/109 (68%), Gaps = 6/109 (5%)

Query: 13  KKSGIVKLKIAVEKIH--KSLLMGRKS--NSYCDDYVPQDVKEGHFAVIAVDGHQQ--KR 66
           K  GIVKLK  VE++   K     +K     Y  D VP+DVKEGHFAVIAVDG+ +  +R
Sbjct: 15  KMGGIVKLKNVVERLVQIKGFSSAKKPCPEEYGRDCVPKDVKEGHFAVIAVDGYHEPTQR 74

Query: 67  FVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERW 115
           FV+ L +L HPMF +LLEQA EEYGF H+GAL +PCRPS L  IL E+W
Sbjct: 75  FVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQW 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:505006276	124	AT2G28085 "AT2G28085" [Arabido	0.612	0.612	0.653	2.3e-23
TAIR|locus:2085104	113	AT3G09870 "AT3G09870" [Arabido	0.540	0.592	0.626	7.5e-18
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	0.548	0.635	0.464	7.9e-14
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.524	0.625	0.477	1.3e-13
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	0.540	0.638	0.478	4.4e-13
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.669	0.685	0.370	3.9e-12
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	0.548	0.629	0.479	5e-12
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.516	0.4	0.484	5e-12
TAIR|locus:2011801	110	AT1G56150 "AT1G56150" [Arabido	0.540	0.609	0.471	8.2e-12
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	0.548	0.581	0.480	1e-11

TAIR|locus:505006276 AT2G28085 "AT2G28085" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 51/78 (65%), Positives = 61/78 (78%)

Query:    40 YCDDYVPQDVKEGHFAVIAVDGHQQ--KRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGA 97
             Y  D VP+DVKEGHFAVIAVDG+ +  +RFV+ L +L HPMF +LLEQA EEYGF H+GA
Sbjct:    46 YGRDCVPKDVKEGHFAVIAVDGYHEPTQRFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGA 105

Query:    98 LTIPCRPSELERILAERW 115
             L +PCRPS L  IL E+W
Sbjct:   106 LMVPCRPSHLRMILTEQW 123

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2085104 AT3G09870 "AT3G09870" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/67 (62%), Positives = 50/67 (74%)

Query:    45 VPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRP 104
             +P DVKEGH AVIAV G + KRFV+ L  L  P FLRLLEQA EE+GF   G LTIPC+P
Sbjct:    41 IPSDVKEGHVAVIAVKGERIKRFVLELEELNKPEFLRLLEQAREEFGFQPRGPLTIPCQP 100

Query:   105 SELERIL 111
              E+++IL
Sbjct:   101 EEVQKIL 107

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 33/71 (46%), Positives = 49/71 (69%)

Query:    33 MGRKSNS-YCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYG 91
             +G+K+   Y +D +P DV +GHF V    G  + R+++ +S+LTHP F  LL++A EE+G
Sbjct:    26 LGKKNGGGYDEDCLPLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQSLLQRAEEEFG 83

Query:    92 FDHEGALTIPC 102
             FDH+  LTIPC
Sbjct:    84 FDHDMGLTIPC 94

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 32/67 (47%), Positives = 47/67 (70%)

Query:    36 KSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE 95
             K+  Y +D +P DV +GHF V    G ++ R+++ +S+LTHP F  LL+QA EE+GF+H+
Sbjct:    27 KNQCYDEDGLPVDVPKGHFPVYV--GEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHD 84

Query:    96 GALTIPC 102
               LTIPC
Sbjct:    85 MGLTIPC 91

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 34/71 (47%), Positives = 50/71 (70%)

Query:    33 MGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGF 92
             +G+K   Y ++ +P DV +GHF V    G ++ R+++ +S+LTHP FL LL+QA EE+GF
Sbjct:    25 LGKKQ-CYDEEGLPLDVPKGHFPVYV--GEKRTRYIVPISFLTHPEFLILLQQAEEEFGF 81

Query:    93 DHE-GALTIPC 102
              H+ G LTIPC
Sbjct:    82 RHDMGGLTIPC 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/89 (37%), Positives = 53/89 (59%)

Query:    25 EKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAV-IAVDGHQQKRFVISLSYLTHPMFLRLL 83
             EK  KS  + RK +        +DV +G  A+ +   G +Q+RF++ + Y  HP+F++LL
Sbjct:     5 EKTLKSFQLHRKQSVKV-----KDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLL 59

Query:    84 EQAAEEYGFDHEGALTIPCRPSELERILA 112
             ++A +EYGFD +G +TIPC   E   + A
Sbjct:    60 KEAEDEYGFDQKGTITIPCHVEEFRYVQA 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 35/73 (47%), Positives = 48/73 (65%)

Query:    33 MGRK-SNSYCDDY--VPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEE 89
             +G+K SN Y +D    P +V +GHF V    G  + R+V+ +S+LT P F  LL+QA EE
Sbjct:    25 LGKKQSNVYGEDENGSPLNVPKGHFVVYV--GENRVRYVVPISFLTRPEFQLLLQQAEEE 82

Query:    90 YGFDHEGALTIPC 102
             +GFDH+  LTIPC
Sbjct:    83 FGFDHDMGLTIPC 95

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/66 (48%), Positives = 44/66 (66%)

Query:    46 PQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPS 105
             P DV +G+ AV    G + +RF+I  ++L+H +F  LLE+A EEYGFDH GALTIPC   
Sbjct:    76 PPDVPKGYLAVYV--GPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVE 133

Query:   106 ELERIL 111
               + +L
Sbjct:   134 TFKYLL 139

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2011801 AT1G56150 "AT1G56150" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/70 (47%), Positives = 45/70 (64%)

Query:    49 VKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALTIPCRPSELE 108
             V EGH  V    GH+ +RFV++   L HP+F+ LL+Q+A+EYG++ +G L IPC     E
Sbjct:    38 VPEGHVPVYV--GHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFE 95

Query:   109 RILAERWREG 118
             RIL E  R G
Sbjct:    96 RIL-ESLRLG 104

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query:    33 MGRKSNS-YCD------DYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQ 85
             +G+K +S Y D      D +P DV +GHF V+ V G++  R+V+ +S+LT P F  LL+Q
Sbjct:    25 LGKKQSSEYNDTHEHDGDSLPLDVPKGHF-VVYVGGNRV-RYVLPISFLTRPEFQLLLQQ 82

Query:    86 AAEEYGFDHEGALTIPC 102
             A EE+GFDH   LTIPC
Sbjct:    83 AEEEFGFDHNMGLTIPC 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT2G28085 auxin-responsive family protein; auxin-responsive family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to auxin stimulus; LOCATED IN- cellular_component unknown; EXPRESSED IN- 8 plant structures; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Auxin responsive SAUR protein (InterPro-IPR003676); BEST Arabidopsis thaliana protein match is- auxin-responsive family protein (TAIR-AT4G34760.1); Has 654 Blast hits to 643 proteins in 20 species- Archae - 0; Bacteria - [...] (124 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	2e-28
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-22
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	3e-13
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-13

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 99.3 bits (248), Expect = 2e-28
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 17  IVKLKIAVEKIHKSLLMGRKSNSYCDDYVP-QDVKEGHFAVIAVDGHQQKRFVISLSYLT 75
             +LK A       L      +          DV +GHFAV    G + +RFV+ +SYL 
Sbjct: 2   ASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYV--GEETRRFVVPISYLN 59

Query: 76  HPMFLRLLEQAAEEYGFDHEGALTIPCRPSELERILA 112
           HP+F  LL++A EE+GFD +G LTIPC     E +L 
Sbjct: 60  HPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLW 96

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 84.4 bits (209), Expect = 2e-22
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 11  IIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVIS 70
            IKKS  +     +++I K      K   Y +D +P DV +GHF V    G  + R+++ 
Sbjct: 2   AIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYV--GENRSRYIVP 59

Query: 71  LSYLTHPMFLRLLEQAAEEYGFDHEGALTIPC 102
           +S+LTHP F  LL+QA EE+GFDH+  LTIPC
Sbjct: 60  ISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPC 91

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 60.9 bits (147), Expect = 3e-13
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 30  SLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDG--HQQKRFVISLSYLTHPMFLRLLEQAA 87
           SL    +++S   D+VP+    GH AV   +    ++KRFV+ +S+L HP F   L +A 
Sbjct: 20  SLANRNRTSSSSSDHVPK----GHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE 75

Query: 88  EEYGFDHE-GALTIPCRPSELERILAER 114
           EE+GF+H  G LTIPCR      ++A R
Sbjct: 76  EEFGFNHPMGGLTIPCREEVFLDLIASR 103

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 60.5 bits (146), Expect = 4e-13
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 49  VKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHE-GALTIPCR 103
           V +GH AV   +  ++KRFV+ +SYL HP+F   L +A EE GF H  G LTIPCR
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCR 94

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	86.91
PRK02899	197	adaptor protein; Provisional	83.87

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=226.81  Aligned_cols=99  Identities=37%  Similarity=0.646  Sum_probs=85.8

Q ss_pred             ccccccchhHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCceEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHHh
Q 041860           10 KIIKKSGIVKLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEE   89 (124)
Q Consensus        10 ~~~~~~~i~kLk~~~kk~~~~~~~~~k~~~~~~~~~~~~vpkG~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aeeE   89 (124)
                      |.+|+.++++||+|+++|.+..   +++. +.....|.+||+|||||||  |++++||+||++|||||+|++||++||||
T Consensus         5 k~~ki~~~~~~kq~l~r~~s~~---~~~~-~~~~~~~~~vpkG~~aVyV--G~~~~RfvVp~~~L~hP~F~~LL~~aeeE   78 (104)
T PLN03090          5 KSNKLTQTAMLKQILKRCSSLG---KKQG-YDEDGLPLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQSLLQQAEEE   78 (104)
T ss_pred             cccchhHHHHHHHHHHHHHHhc---ccCC-cccccCCCCCCCCcEEEEE--CCCCEEEEEEHHHcCCHHHHHHHHHHHHH
Confidence            3446888999999999998653   3322 1223468889999999999  77889999999999999999999999999


Q ss_pred             cCCCCCCceEecCCHHHHHHHHHHH
Q 041860           90 YGFDHEGALTIPCRPSELERILAER  114 (124)
Q Consensus        90 fG~~~~G~L~iPC~~~~Fe~vL~~~  114 (124)
                      |||+|+|+|+|||+++.|+++||.+
T Consensus        79 fGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         79 FGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             hCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999999999987

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.1e-35  Score=209.45  Aligned_cols=93  Identities=41%  Similarity=0.660  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCceEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHHhcCCCCCCceE
Q 041860           20 LKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDHEGALT   99 (124)
Q Consensus        20 Lk~~~kk~~~~~~~~~k~~~~~~~~~~~~vpkG~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~G~L~   99 (124)
                      ...++++|++.....+...+..++....++|+|||||||  |++++||+||++|||||+|++||++|+|||||+++|+|+
T Consensus         7 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyV--G~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~   84 (100)
T PF02519_consen    7 SLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYV--GEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLT   84 (100)
T ss_pred             HHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEe--CccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEE
Confidence            344456777655544433332222334789999999999  879999999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHHH
Q 041860          100 IPCRPSELERILAER  114 (124)
Q Consensus       100 iPC~~~~Fe~vL~~~  114 (124)
                      |||+++.|+++||.+
T Consensus        85 iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   85 IPCDVVLFEHLLWLL   99 (100)
T ss_pred             eeCCHHHHHHHHHHh
Confidence            999999999999976

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=199.40  Aligned_cols=71  Identities=41%  Similarity=0.748  Sum_probs=65.4

Q ss_pred             CCCCCCCCCceEEEEeecCceeeEEEEeecccCcHHHHHHHHHHHHhcCCCC-CCceEecCCHHHHHHHHHH
Q 041860           43 DYVPQDVKEGHFAVIAVDGHQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDH-EGALTIPCRPSELERILAE  113 (124)
Q Consensus        43 ~~~~~~vpkG~~aVyV~~G~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~G~L~iPC~~~~Fe~vL~~  113 (124)
                      .+.+.+||+||||||||+++|++||+||++|||||+|++||++|||||||+| +|+|+|||+++.|+++|..
T Consensus        33 ~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         33 TTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            3456789999999999776689999999999999999999999999999997 5999999999999999975

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=198.24  Aligned_cols=90  Identities=34%  Similarity=0.630  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCceEEEEeecC--ceeeEEEEeecccCcHHHHHHHHHHHHhcCCCC-C
Q 041860           19 KLKIAVEKIHKSLLMGRKSNSYCDDYVPQDVKEGHFAVIAVDG--HQQKRFVISLSYLTHPMFLRLLEQAAEEYGFDH-E   95 (124)
Q Consensus        19 kLk~~~kk~~~~~~~~~k~~~~~~~~~~~~vpkG~~aVyV~~G--~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~-~   95 (124)
                      ++||++++.. .   +++...  .+..+.+||+||||||||++  .+++||+||++|||||+|++||++|||||||+| +
T Consensus        11 ~~k~~~~~~~-~---~~~~~~--~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~   84 (105)
T PLN03220         11 ATKQILKLNS-L---ANRNRT--SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPM   84 (105)
T ss_pred             HHHHHHHHHh-h---cccccc--cccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCC
Confidence            4577777665 2   221111  12356789999999999654  257999999999999999999999999999998 5


Q ss_pred             CceEecCCHHHHHHHHHHH
Q 041860           96 GALTIPCRPSELERILAER  114 (124)
Q Consensus        96 G~L~iPC~~~~Fe~vL~~~  114 (124)
                      |+|+|||+++.|+++|...
T Consensus        85 G~L~IPCd~~~F~~ll~s~  103 (105)
T PLN03220         85 GGLTIPCREEVFLDLIASR  103 (105)
T ss_pred             CCEEeeCCHHHHHHHHHhh
Confidence            9999999999999999754

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.91  E-value=0.7  Score=30.99  Aligned_cols=52  Identities=29%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             eEEEEeecccC-cH--HHHHHHHHHHHhcCCCCCCceEecCCHHHHHHHHHHHHh
Q 041860           65 KRFVISLSYLT-HP--MFLRLLEQAAEEYGFDHEGALTIPCRPSELERILAERWR  116 (124)
Q Consensus        65 ~RfvVp~~yL~-hP--~F~~LL~~aeeEfG~~~~G~L~iPC~~~~Fe~vL~~~~~  116 (124)
                      ++|.++.+-|. +|  .|..|+........-+.+|.+-|-++...|++||.-++.
T Consensus         8 ~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    8 TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhh
Confidence            89999999888 44  788888864222222346999999999999999998776

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=83.87  E-value=0.99  Score=35.50  Aligned_cols=25  Identities=28%  Similarity=0.808  Sum_probs=21.9

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCceEe
Q 041860           76 HPMFLRLLEQAAEEYGFDHEGALTI  100 (124)
Q Consensus        76 hP~F~~LL~~aeeEfG~~~~G~L~i  100 (124)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00