Citrus Sinensis ID: 041867

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
Protein Sequence
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccEEEEEccHHcccccccccEEEcccccccEEcccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccccccccEEEccccccccEEEccccEEEEccccccccccccccEEccccEEcccccHHHcccccccEEEccccccEEEcccccccccccEEEccccccEEccccccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEEEEEcccEEEEccccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHcccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHHccccccEEEccccccccccccccHHHcccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccccEEEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEEccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEEcccccccccccccccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccccccHHHHHHHHHcccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccccccccccHHcccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEHHccccccccc
Coil and Loop (DISEMBL)
LHNFTNLEYLTLHGSSLHISLLQSIASIFpslknlsisycevngvvhgqgfphfkslehLGMMSTRIALNTNFLQVISESMPSLKYLSLSYstlgtnssrildrglcspvhlqelyigsndlrgslpwcmtnltslrildvssnqltgsisssplihlTSIEKlylsnnhfqipisleplfnhsrlktfyadnnelnaeitqshsltapnfqlsrlslssgyedgvtfpkflyhqhdletVELSHIkmngefptwllenntkLRQLSLVndslggpfrlpihshkrlgmldisnnnfrghipieigdvlpslylfnnsmnaldgsipsslgnmkFLQILDlsnnhltgeipehlAVGCVNLQSLALsnnnlqeglylnnnslsgkiprwlgnLTWLQYIImpnnhlegpipvefcQLDLLQildisdnnisgslpscfhplsikqvhLSKNMLhgqlkrdlsynrlngsipdwvDGLSQLSHLILGHNNLEGEVLVQLCELNqlqlldlsnnnlhgpippcfdnttlyesysnsssldeQFEIFFSiespqgnveKQIHEIFEFTTKNIVYIYQGKVLSLLsgldlscnkligpippqignltriqtlnlshndliglipstfsnlkhvesldlsnnklngkiphqlVELKTLEVFSVAYNNlsgeipewTAQFATfnessyegntflcglplpicrspatmseasignerddnlidmdsFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFvvdnliptrfyh
Flexible Loop (DISEMBL)
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Low Complexity Region (SEG)
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISEsmpslkylslsystlgtnssRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVnlqslalsnnnlqEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCqldllqildiSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVlvqlcelnqlqlldlsnnnlHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Disordered region (IsUnstruct)
***FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSP************DDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRF**
Disordered Region (DISOPRED)
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESY*****LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG****************************DSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Disordered Region (DISEMBL)
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Disordered Region (DISPRO)
*HNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFYH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	776	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.787	0.488	0.291	1e-54
Q9FL28	1173	LRR receptor-like serine/	no	no	0.658	0.435	0.327	1e-52
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.677	0.483	0.319	2e-51
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.802	0.534	0.303	6e-51
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.679	0.421	0.314	7e-51
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.721	0.489	0.289	3e-50
Q9LJF3	1164	Receptor-like protein kin	no	no	0.800	0.533	0.302	2e-49
Q9LHP4	1141	Receptor-like protein kin	no	no	0.731	0.497	0.306	2e-49
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.822	0.528	0.294	6e-49
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.744	0.484	0.297	8e-49

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  215 bits (547), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 212/727 (29%), Positives = 328/727 (45%), Gaps = 116/727 (15%)

Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           V LQ L +  N+L G +P  + N TSL +   + N+L GS+ +  L  L +++ L L +N
Sbjct: 192 VQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDN 250

Query: 170 HF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
            F  +IP  L  L +   L       N+L   I +  +  A    L  L LSS    GV 
Sbjct: 251 SFSGEIPSQLGDLVSIQYLNLI---GNQLQGLIPKRLTELA---NLQTLDLSSNNLTGVI 304

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
             +F +  + LE + L+  +++G  P  +  NNT L+QL L    L G     I + + L
Sbjct: 305 HEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSL 363

Query: 288 GMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSM---------------------NALDG 324
            +LD+SNN   G IP  +  +  L +LYL NNS+                     N L+G
Sbjct: 364 KLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEG 423

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------------ 372
            +P  +G +  L+I+ L  N  +GE+P  +   C  LQ +    N L             
Sbjct: 424 KVPKEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEIPSSIGRLKD 482

Query: 373 -EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
              L+L  N L G IP  LGN   +  I + +N L G IP  F  L  L++  I +N++ 
Sbjct: 483 LTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQ 542

Query: 432 GSLPSCFHPLS-IKQVHLSKNMLHGQL--------------------------------- 457
           G+LP     L  + +++ S N  +G +                                 
Sbjct: 543 GNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNL 602

Query: 458 -KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG 516
            +  L  N+  G IP     +S+LS L +  N+L G + V+L    +L  +DL+NN L G
Sbjct: 603 DRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSG 662

Query: 517 PIPPCFDNTTLYESYSNSS------------SLDEQFEIFFSIESPQGNVEKQIHEIFEF 564
            IP       L      SS            SL     +F    S  G++ ++I  +   
Sbjct: 663 VIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQAL 722

Query: 565 TTKNI--------VYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQT-LNLSHNDL 615
              N+        +    GK LS L  L LS N L G IP +IG L  +Q+ L+LS+N+ 
Sbjct: 723 NALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNF 781

Query: 616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 675
            G IPST S L  +ESLDLS+N+L G++P Q+ ++K+L   +++YNNL G++ +   QF+
Sbjct: 782 TGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFS 838

Query: 676 TFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTS-YVIVIF 734
            +   ++ GN  LCG PL  C    + ++ S+  +            I+  +S   I + 
Sbjct: 839 RWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKT--------VVIISAISSLAAIALM 890

Query: 735 AIVIILY 741
            +VIIL+
Sbjct: 891 VLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 206/629 (32%), Positives = 290/629 (46%), Gaps = 118/629 (18%)

Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
           G CS +   ELY   N L G +P  + NL  L+ L +  N+LT SI SS L  LT +  L
Sbjct: 261 GNCSSLVQLELY--DNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS-LFRLTQLTHL 317

Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED 224
            LS NH   PIS E  F  S L+     +N    E                         
Sbjct: 318 GLSENHLVGPISEEIGFLES-LEVLTLHSNNFTGE------------------------- 351

Query: 225 GVTFPKFLYHQHDLETVELSHIKMNGEFPT--WLLENNTKLRQLSLVNDSLGGPFRLPIH 282
              FP+ + +  +L  + +    ++GE P    LL N   LR LS  ++ L GP    I 
Sbjct: 352 ---FPQSITNLRNLTVLTVGFNNISGELPADLGLLTN---LRNLSAHDNLLTGPIPSSIS 405

Query: 283 SHKRLGMLDISNNNFRGHIP----------IEIG----------DVL--PSLYLFNNSMN 320
           +   L +LD+S+N   G IP          I IG          D+    +L   + + N
Sbjct: 406 NCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query: 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNN 380
            L G++   +G ++ L+IL +S N LTG IP  +     NL+ L +        LYL++N
Sbjct: 466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIG----NLKDLNI--------LYLHSN 513

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP 440
             +G+IPR + NLT LQ + M +N LEGPIP E   + LL +LD+S+N  SG +P+ F  
Sbjct: 514 GFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSK 573

Query: 441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL-C 499
           L     +LS           L  N+ NGSIP  +  LS L+   +  N L G +  +L  
Sbjct: 574 LE-SLTYLS-----------LQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLA 621

Query: 500 ELNQLQL-LDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
            L  +QL L+ SNN L G IP       + +    S++L       FS     G++ + +
Sbjct: 622 SLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNL-------FS-----GSIPRSL 669

Query: 559 HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIG 617
                   KN+              LD S N L G IP ++   +  I +LNLS N   G
Sbjct: 670 Q-----ACKNVFT------------LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSG 712

Query: 618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 677
            IP +F N+ H+ SLDLS+N L G+IP  L  L TL+   +A NNL G +PE +  F   
Sbjct: 713 EIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNI 771

Query: 678 NESSYEGNTFLCGLPLPICRSPATMSEAS 706
           N S   GNT LCG   P+   P T+ + S
Sbjct: 772 NASDLMGNTDLCGSKKPL--KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  204 bits (520), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 293/598 (48%), Gaps = 72/598 (12%)

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
           ++ L + ++ L G L   +  L SL  LD+S N  +G + S+ L + TS+E L LSNN F
Sbjct: 78  VETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPST-LGNCTSLEYLDLSNNDF 136

Query: 172 --QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
             ++P     L N   L   Y D N L+  I  S        +L  L +S     G T P
Sbjct: 137 SGEVPDIFGSLQN---LTFLYLDRNNLSGLIPAS---VGGLIELVDLRMSYNNLSG-TIP 189

Query: 230 KFLYHQHDLETVELSHIKMNGEFPT--WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
           + L +   LE + L++ K+NG  P   +LLEN   L +L + N+SLGG       + K+L
Sbjct: 190 ELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLGGRLHFGSSNCKKL 246

Query: 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
             LD+S N+F+G +P EIG+   SL+        L G+IPSS+G ++ + ++DLS+N L+
Sbjct: 247 VSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLS 305

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGNLT 394
           G IP+ L   C +L++L L++N LQ             + L L  N LSG+IP  +  + 
Sbjct: 306 GNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQ 364

Query: 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
            L  +++ NN L G +PVE  QL  L+ L + +N   G +P            +S  +  
Sbjct: 365 SLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIP------------MSLGLNR 412

Query: 455 GQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
              + DL  NR  G IP  +    +L   ILG N L G++   + +   L+ + L +N L
Sbjct: 413 SLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNKL 472

Query: 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
            G +P   ++ +L  SY N  S            S +G++ + +      + KN++ I  
Sbjct: 473 SGVLPEFPESLSL--SYVNLGS-----------NSFEGSIPRSLG-----SCKNLLTI-- 512

Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
                     DLS NKL G IPP++GNL  +  LNLSHN L G +PS  S    +   D+
Sbjct: 513 ----------DLSQNKLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDV 562

Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 692
            +N LNG IP      K+L    ++ NN  G IP++ A+    ++     N F   +P
Sbjct: 563 GSNSLNGSIPSSFRSWKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIP 620

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  202 bits (515), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 215/708 (30%), Positives = 326/708 (46%), Gaps = 85/708 (12%)

Query: 110 VHLQELYIGSNDLR--GSLPWCMTNLTSLRILDVSSNQLTGSISSSP--LIHLTSIEKLY 165
            +LQ L + SN +     + +  +  ++L  +++S+N+L G +  +P  L  LT+++  Y
Sbjct: 125 CYLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTVDLSY 184

Query: 166 --LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYE 223
             LS+   +IP S    F  S LK     +N L+ + +        N  L+  SLS    
Sbjct: 185 NILSD---KIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGN--LTFFSLSQNNL 238

Query: 224 DGVTFPKFLYHQHDLETVELSHIKMNGEFPT---WLLENNTKLRQLSLVNDSLGG--PFR 278
            G  FP  L +   LET+ +S   + G+ P    W    N  L+QLSL ++ L G  P  
Sbjct: 239 SGDKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQN--LKQLSLAHNRLSGEIPPE 296

Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEI-----------------GDVLPSL--------Y 313
           L +   K L +LD+S N F G +P +                  GD L ++        Y
Sbjct: 297 LSLLC-KTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITY 355

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373
           L+  + N + GS+P SL N   L++LDLS+N  TG +P     G  +LQS     + + E
Sbjct: 356 LYV-AYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPS----GFCSLQS-----SPVLE 405

Query: 374 GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGS 433
            + + NN LSG +P  LG    L+ I +  N L GPIP E   L  L  L +  NN++G+
Sbjct: 406 KILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGT 465

Query: 434 LPS--CFHPLSIKQVHLSKNMLHGQLKRD-----------LSYNRLNGSIPDWVDGLSQL 480
           +P   C    +++ + L+ N+L G +              LS NRL G IP  +  LS+L
Sbjct: 466 IPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKL 525

Query: 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT---LYESYSNSSSL 537
           + L LG+N+L G V  QL     L  LDL++NNL G +P    +     +  S S     
Sbjct: 526 AILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFA 585

Query: 538 DEQFEIFFSIESPQGNVE------KQIHEIFEFTTKNIVYIYQGKVLSLLSG------LD 585
             + E         G VE      +++  +    +     IY G  +   S        D
Sbjct: 586 FVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFD 645

Query: 586 LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH 645
           +S N + G IPP  GN+  +Q LNL HN + G IP +F  LK +  LDLS+N L G +P 
Sbjct: 646 ISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPG 705

Query: 646 QLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEA 705
            L  L  L    V+ NNL+G IP +  Q  TF  S Y  N+ LCG+PL  C S       
Sbjct: 706 SLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGSAPRRPIT 764

Query: 706 SIGNERDDNLIDMDSFFITFT-TSYVIVIFAIVIILYVNSYWRRRWFY 752
           S  + +   +       I F+   +V+++ A+  +  V    ++R  Y
Sbjct: 765 SRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKY 812

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  202 bits (515), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 282/610 (46%), Gaps = 83/610 (13%)

Query: 106 LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY 165
           L S V+++ L IG N+L G +P  + NL +L++L ++S +LTG I S  L  L  ++ L 
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLI 197

Query: 166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDG 225
           L +N+ + PI  E L N S L  F A  N LN                            
Sbjct: 198 LQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNG--------------------------- 229

Query: 226 VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHK 285
            T P  L    +LE + L++  + GE P+ L E  ++L+ LSL+ + L G     +    
Sbjct: 230 -TIPAELGRLENLEILNLANNSLTGEIPSQLGEM-SQLQYLSLMANQLQGLIPKSLADLG 287

Query: 286 RLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALDGSIPSSL-GNMKFLQILDLS 342
            L  LD+S NN  G IP E  ++  L  L L NN    L GS+P S+  N   L+ L LS
Sbjct: 288 NLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNH---LSGSLPKSICSNNTNLEQLVLS 344

Query: 343 NNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRW 389
              L+GEIP  L+  C +L+ L LSNN+L                LYL+NN+L G +   
Sbjct: 345 GTQLSGEIPVELS-KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPS 403

Query: 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHL 448
           + NLT LQ++++ +N+LEG +P E   L  L++L + +N  SG +P    +  S+K +  
Sbjct: 404 ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMI-- 461

Query: 449 SKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLD 508
                      D+  N   G IP  +  L +L+ L L  N L G +   L   +QL +LD
Sbjct: 462 -----------DMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILD 510

Query: 509 LSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKN 568
           L++N L G IP  F      E            ++     S QGN+   +  +   T  N
Sbjct: 511 LADNQLSGSIPSSFGFLKGLE------------QLMLYNNSLQGNLPDSLISLRNLTRIN 558

Query: 569 IVYIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622
           + +      +  L G       D++ N     IP ++GN   +  L L  N L G IP T
Sbjct: 559 LSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWT 618

Query: 623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY 682
              ++ +  LD+S+N L G IP QLV  K L    +  N LSG IP W  + +   E   
Sbjct: 619 LGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKL 678

Query: 683 EGNTFLCGLP 692
             N F+  LP
Sbjct: 679 SSNQFVESLP 688

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  200 bits (509), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 186/643 (28%), Positives = 292/643 (45%), Gaps = 83/643 (12%)

Query: 136 LRILDVSSNQLTGSIS--SSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADN 193
           L+ LD+S N +TG IS  + PL    S+  L  S N     IS + L N + LK+     
Sbjct: 179 LQTLDLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYIS-DSLINCTNLKSLNLSY 237

Query: 194 NELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFP 253
           N  + +I                            PK       L++++LSH ++ G  P
Sbjct: 238 NNFDGQI----------------------------PKSFGELKLLQSLDLSHNRLTGWIP 269

Query: 254 TWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLY 313
             + +    L+ L L  ++  G     + S   L  LD+SNNN  G  P  I     SL 
Sbjct: 270 PEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQ 329

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ- 372
           +   S N + G  P+S+   K L+I D S+N  +G IP  L  G  +L+ L L +N +  
Sbjct: 330 ILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTG 389

Query: 373 ------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLL 420
                         + L+ N L+G IP  +GNL  L+  I   N++ G IP E  +L  L
Sbjct: 390 EIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNL 449

Query: 421 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQ 479
           + L +++N ++G +P  F   S I+ V  + N L G++ +D                LS+
Sbjct: 450 KDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGI-------------LSR 496

Query: 480 LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYS---NSSS 536
           L+ L LG+NN  GE+  +L +   L  LDL+ N+L G IPP        ++ S   + ++
Sbjct: 497 LAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNT 556

Query: 537 LDEQFEIFFSIESPQGNVE------KQIHEIFEFTTKNIVYIYQGKVLSLLSG------L 584
           +     +  S +   G VE      +++ +I    + +   +Y G +LSL +       L
Sbjct: 557 MAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYL 616

Query: 585 DLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP 644
           DLS N+L G IP +IG +  +Q L LSHN L G IP T   LK++   D S+N+L G+IP
Sbjct: 617 DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIP 676

Query: 645 HQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS-----P 699
                L  L    ++ N L+G IP+   Q +T   + Y  N  LCG+PLP C++     P
Sbjct: 677 ESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLP 735

Query: 700 ATMSEASIGNERDDNLIDMDSF----FITFTTSYVIVIFAIVI 738
           A   E              +S      I+  +  +++++AI +
Sbjct: 736 AGTEEGKRAKHGTRAASWANSIVLGVLISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 214/708 (30%), Positives = 314/708 (44%), Gaps = 87/708 (12%)

Query: 112 LQELYIGSNDLRGS--LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           L+ L + SN L  S  + +  +   +L  ++ S N+L G + SSP      I  + LSNN
Sbjct: 126 LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNN 185

Query: 170 HF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
            F  +IP +    F +S LK      N +  + ++       N  L+  SLS     G  
Sbjct: 186 RFSDEIPETFIADFPNS-LKHLDLSGNNVTGDFSRLSFGLCEN--LTVFSLSQNSISGDR 242

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPT---WLLENNTKLRQLSLVNDSLGG--PFRLPIH 282
           FP  L +   LET+ LS   + G+ P    W   N   LRQLSL ++   G  P  L + 
Sbjct: 243 FPVSLSNCKLLETLNLSRNSLIGKIPGDDYW--GNFQNLRQLSLAHNLYSGEIPPELSLL 300

Query: 283 SHKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSM--------------------- 319
             + L +LD+S N+  G +P        L SL L NN +                     
Sbjct: 301 C-RTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLP 359

Query: 320 -NALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLN 378
            N + GS+P SL N   L++LDLS+N  TGE+P     G  +LQS     +++ E L + 
Sbjct: 360 FNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPS----GFCSLQS-----SSVLEKLLIA 410

Query: 379 NNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-- 436
           NN LSG +P  LG    L+ I +  N L G IP E   L  L  L +  NN++G +P   
Sbjct: 411 NNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESI 470

Query: 437 CFHPLSIKQVHLSKNMLHGQLKRD-----------LSYNRLNGSIPDWVDGLSQLSHLIL 485
           C    +++ + L+ N+L G L              LS N L G IP  +  L +L+ L L
Sbjct: 471 CVDGGNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQL 530

Query: 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF 545
           G+N+L G +  +L     L  LDL++NNL G +P    +        + S   +QF    
Sbjct: 531 GNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSG--KQFAF-- 586

Query: 546 SIESPQGNVEKQIHEIFEFTTKNI--------------VYIYQGKVLSLLSG------LD 585
            + +  G   +    + EF                     IY G  + + S       LD
Sbjct: 587 -VRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLD 645

Query: 586 LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH 645
           LS N + G IP   G +  +Q LNL HN L G IP +F  LK +  LDLS+N L G +P 
Sbjct: 646 LSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPG 705

Query: 646 QLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEA 705
            L  L  L    V+ NNL+G IP +  Q  TF  + Y  N+ LCG+PLP C S +  + +
Sbjct: 706 SLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRS 764

Query: 706 SIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYF 753
               ++      M +  +      V++I A+     V    ++R  Y 
Sbjct: 765 HAHPKKQSIATGMSAGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  197 bits (502), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 300/629 (47%), Gaps = 61/629 (9%)

Query: 83  SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVS 142
           SL+ L++S    G N +  L   L   + L+ L + SN L G +PW ++ L +L  L ++
Sbjct: 106 SLQKLTIS----GANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILN 161

Query: 143 SNQLTGSISSSPLIHLTSIEKLYLSNNHF--QIPISLEPLFNHSRLKTFYADNNELNAEI 200
           SNQLTG I    +   + ++ L L +N     IP  L  L     ++     N E++ +I
Sbjct: 162 SNQLTGKIPPD-ISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIR--IGGNKEISGQI 218

Query: 201 TQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENN 260
               S       L+ L L+     G   P  L     LET+ +    ++GE P+  L N 
Sbjct: 219 P---SEIGDCSNLTVLGLAETSVSG-NLPSSLGKLKKLETLSIYTTMISGEIPSD-LGNC 273

Query: 261 TKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320
           ++L  L L  +SL G     I    +L  L +  N+  G IP EIG+   +L + + S+N
Sbjct: 274 SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNC-SNLKMIDLSLN 332

Query: 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNN 380
            L GSIPSS+G + FL+   +S+N  +G IP  ++    N  SL          L L+ N
Sbjct: 333 LLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTIS----NCSSLV--------QLQLDKN 380

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-CFH 439
            +SG IP  LG LT L      +N LEG IP        LQ LD+S N+++G++PS  F 
Sbjct: 381 QISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFM 440

Query: 440 PLSIKQVHLSKNMLHGQLKRD-----------LSYNRLNGSIPDWVDGLSQLSHLILGHN 488
             ++ ++ L  N L G + ++           L +NR+ G IP  +  L +++ L    N
Sbjct: 441 LRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSN 500

Query: 489 NLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
            L G+V  ++   ++LQ++DLSNN+L G +P          S S    LD     F    
Sbjct: 501 RLHGKVPDEIGSCSELQMIDLSNNSLEGSLP------NPVSSLSGLQVLDVSANQF---- 550

Query: 549 SPQGNVEKQIHEIFEFT----TKNIVYIYQGKVLSLLSG---LDLSCNKLIGPIPPQIGN 601
              G +   +  +        +KN+        L + SG   LDL  N+L G IP ++G+
Sbjct: 551 --SGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGD 608

Query: 602 LTRIQ-TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 660
           +  ++  LNLS N L G IPS  ++L  +  LDLS+N L G +   L  ++ L   +++Y
Sbjct: 609 IENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISY 667

Query: 661 NNLSGEIPEWTAQFATFNESSYEGNTFLC 689
           N+ SG +P+    F   +    EGN  LC
Sbjct: 668 NSFSGYLPD-NKLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  196 bits (498), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 211/716 (29%), Positives = 333/716 (46%), Gaps = 78/716 (10%)

Query: 84  LKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS--LPWCMT-NLTSLRILD 140
           LK L+LS + L      +L     S   LQ L +  N++ G    PW  +     L    
Sbjct: 162 LKSLNLSKNFLDPPGKEMLKGATFS---LQVLDLSYNNISGFNLFPWVSSMGFVELEFFS 218

Query: 141 VSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNH-SRLKTFYADNNELNAE 199
           +  N+L GSI   P +   ++  L LS N+F    ++ P F   S L+     +N+   +
Sbjct: 219 IKGNKLAGSI---PELDFKNLSYLDLSANNFS---TVFPSFKDCSNLQHLDLSSNKFYGD 272

Query: 200 ITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLEN 259
           I  S S      +LS L+L++    G+  PK       L+ + L      G +P  L + 
Sbjct: 273 IGSSLSSCG---KLSFLNLTNNQFVGLV-PKL--PSESLQYLYLRGNDFQGVYPNQLADL 326

Query: 260 NTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM 319
              + +L L  ++  G     +     L ++DISNNNF G +P++    L ++     S 
Sbjct: 327 CKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSF 386

Query: 320 NALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG----- 374
           N   G +P S  N+  L+ LD+S+N+LTG IP  +    +N   +    NNL +G     
Sbjct: 387 NKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDS 446

Query: 375 ---------LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 425
                    L L+ N L+G IP  LG+L+ L+ +I+  N L G IP E   L  L+ L +
Sbjct: 447 LSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLIL 506

Query: 426 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLIL 485
             N+++G +P+     + K   +S           LS N+L+G IP  +  LS L+ L L
Sbjct: 507 DFNDLTGPIPASLSNCT-KLNWIS-----------LSNNQLSGEIPASLGRLSNLAILKL 554

Query: 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS--LDEQFEI 543
           G+N++ G +  +L     L  LDL+ N L+G IPP      L++   N +   L  +  +
Sbjct: 555 GNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPP-----PLFKQSGNIAVALLTGKRYV 609

Query: 544 FFSIESPQ-----GNV-------EKQIHEIFEFTTKNIVYIYQGKVLSLLSG------LD 585
           +   +  +     GN+       ++Q+  I      N   +Y+G      +       LD
Sbjct: 610 YIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLD 669

Query: 586 LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH 645
           LS NKL G IP ++G +  +  LNL HNDL G+IP     LK+V  LDLS N+ NG IP+
Sbjct: 670 LSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPN 729

Query: 646 QLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEA 705
            L  L  L    ++ NNLSG IPE +A F TF +  +  N+ LCG PLP+  S    S+A
Sbjct: 730 SLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDA 787

Query: 706 S---IGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 758
           +     + R  +L    +  + F+   +  IF ++I+       RR+    +E ++
Sbjct: 788 NQHQKSHRRQASLAGSVAMGLLFS---LFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  196 bits (497), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 202/679 (29%), Positives = 315/679 (46%), Gaps = 101/679 (14%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           HL +L +  N L+ S+P     L +L IL++ S +L G I    L +  S++ L LS N 
Sbjct: 235 HLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPE-LGNCKSLKSLMLSFNS 293

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNA---------EITQSHSLTAPNFQ--------- 212
              P+ LE   +   L TF A+ N+L+          ++  S  L    F          
Sbjct: 294 LSGPLPLE--LSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIED 351

Query: 213 ---LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLV 269
              L  LSL+S    G + P+ L     LE ++LS   ++G     + +  + L +L L 
Sbjct: 352 CPMLKHLSLASNLLSG-SIPRELCGSGSLEAIDLSGNLLSGTIEE-VFDGCSSLGELLLT 409

Query: 270 NDSLGGP-----FRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324
           N+ + G      ++LP+ +      LD+ +NNF G IP  +     +L  F  S N L+G
Sbjct: 410 NNQINGSIPEDLWKLPLMA------LDLDSNNFTGEIPKSLWKST-NLMEFTASYNRLEG 462

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
            +P+ +GN   L+ L LS+N LTGEIP  +      L SL++ N        LN N   G
Sbjct: 463 YLPAEIGNAASLKRLVLSDNQLTGEIPREIG----KLTSLSVLN--------LNANMFQG 510

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSC----FHP 440
           KIP  LG+ T L  + + +N+L+G IP +   L  LQ L +S NN+SGS+PS     FH 
Sbjct: 511 KIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQ 570

Query: 441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE 500
           + +  +   ++  HG    DLSYNRL+G IP+ +     L  + L +N+L GE+   L  
Sbjct: 571 IEMPDLSFLQH--HGIF--DLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSR 626

Query: 501 LNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE 560
           L  L +LDLS N L G IP    N+   +  + +++                 +   I E
Sbjct: 627 LTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANN----------------QLNGHIPE 670

Query: 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP 620
            F              +L  L  L+L+ NKL GP+P  +GNL  +  ++LS N+L G + 
Sbjct: 671 SF-------------GLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELS 717

Query: 621 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 680
           S  S ++ +  L +  NK  G+IP +L  L  LE   V+ N LSGEIP            
Sbjct: 718 SELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFL 777

Query: 681 SYEGNTFLCGLPLP-ICRSPATMSEASIGNERD--------DNLIDMDSFFITFTTSYVI 731
           +   N     +P   +C+ P   S+A +   ++        D  I+       +  + ++
Sbjct: 778 NLAKNNLRGEVPSDGVCQDP---SKALLSGNKELCGRVVGSDCKIEGTKLRSAWGIAGLM 834

Query: 732 VIFAIVIILYVNSYWRRRW 750
           + F I++ ++V S   RRW
Sbjct: 835 LGFTIIVFVFVFSL--RRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
255581263	912	serine-threonine protein kinase, plant-t	0.895	0.762	0.476	1e-175
224142481	781	predicted protein [Populus trichocarpa]	0.885	0.879	0.470	1e-159
224123984	1016	predicted protein [Populus trichocarpa]	0.967	0.739	0.432	1e-159
224073436	1014	predicted protein [Populus trichocarpa]	0.974	0.745	0.418	1e-153
224134891	953	predicted protein [Populus trichocarpa]	0.957	0.779	0.423	1e-152
224112245	876	predicted protein [Populus trichocarpa]	0.887	0.786	0.443	1e-151
224073422	969	predicted protein [Populus trichocarpa]	0.954	0.764	0.426	1e-150
224073382	1309	predicted protein [Populus trichocarpa]	0.846	0.501	0.451	1e-149
224098008	1097	predicted protein [Populus trichocarpa]	0.925	0.654	0.421	1e-147
224073452	710	predicted protein [Populus trichocarpa]	0.810	0.885	0.453	1e-146

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 364/764 (47%), Positives = 472/764 (61%), Gaps = 69/764 (9%)

Query: 46  VHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG 105
           +  Q  P+F++LE L +   +I L  +FLQ +   M SLK LSLS   L      +  +G
Sbjct: 168 IQAQDLPNFENLEELYL--DKIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 106 LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY 165
           LC  +HL+ L + SN+  G LPWC++NLTSL++LD+SSNQ  G IS+SPL  L S+  L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDG 225
           +SNNHFQ+P SL P FNHS LK     NN +  E  + HS  AP FQL  + + SGY   
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGIC 338

Query: 226 VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHK 285
            TFP FLYHQ++L+ V+LSH+ + GEFP WLL NNT+L  L LVN+SL G  +LP+H H 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
            L  LDISNN+   HIP+EIG  LP L L N S N  DGSIPSS GNM  L+ILDLSNN 
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQEGLY----------------------------- 376
           L+G IPEHLA GC +L +L LSNN+LQ  ++                             
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 377 -------LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429
                  L++N LSG IP W+GNL++LQ +I+ NN L+GPIPVEFCQL  L++LD+++N+
Sbjct: 519 SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 430 ISGSLPSCFHPLSIKQVHLSKNMLHGQ-----------LKRDLSYNRLNGSIPDWVDGLS 478
           +SG LPSC  P SI  VHLS+NM+ G            +  DLS NR+ G IP  + G++
Sbjct: 579 VSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGIN 638

Query: 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLD 538
            L  L L  N  +GE+  Q+C L QL L+ L++NNL G IP C     L +S S +  + 
Sbjct: 639 ALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCLQ---LDQSDSLAPDVP 695

Query: 539 EQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQ 598
                      P       +  ++ FTTK   Y YQGK+LS +SG+D SCNKL G IPP+
Sbjct: 696 PVPNPLNPYYLP-------VRPMY-FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPPE 747

Query: 599 IGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658
           +GN + I +LNLS+N   G IPSTFSNLK +ESLDLS N LNG IP QL+ELK L  FSV
Sbjct: 748 MGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFSV 807

Query: 659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDD--NLI 716
           A+NNL G+ P+ T QFATF  SSYEGN  LCGLPLP   +    S A   +  D+  N +
Sbjct: 808 AHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDEESNFL 867

Query: 717 DMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITS 760
           DM++F+ +F  SY  VI  + ++LY+N  WRR WF FV++ I+S
Sbjct: 868 DMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/735 (47%), Positives = 465/735 (63%), Gaps = 48/735 (6%)

Query: 79  ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRI 138
           E + SLK+L+L  + L      I  +GLC    LQEL I  NDL G LP C+TNL +L++
Sbjct: 49  EGLSSLKHLNLDNNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQV 104

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA 198
           LD+S N  +G+IS S +  LTSI  L LS+NHFQIPISL P FN S LK    D+NE+  
Sbjct: 105 LDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYE 164

Query: 199 EITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLE 258
                H+L  P FQL RLSL+  +  G TFPKFLY+QHDL+ V+LSHIK+ GEFP+WLL+
Sbjct: 165 STELVHNLI-PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQ 222

Query: 259 NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNS 318
           NNTKL  L LVN SL G  +LP  SH  L  LDIS N+ +  IP +IG   P L   N S
Sbjct: 223 NNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLS 282

Query: 319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------ 372
            N   GSIPSS+ NM  L +LDLSNN L+G IPE L  GC++L+ L LSNN+L+      
Sbjct: 283 RNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWR 342

Query: 373 -------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 425
                    L L+ N L+G +P  L N + L+ + +  N+L G IP     +  LQ LD+
Sbjct: 343 SFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDL 402

Query: 426 SDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQL-----------KRDLSYNRLNGSIPDW 473
           S+NN+ GSLPS F    ++ +V+LSKN L G L           + DLS+N   G IP+ 
Sbjct: 403 SENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPES 462

Query: 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSN 533
           +  L +LS L+LG+NNLEG++  QLC+L +L L+DLS+N+L G I PC   T+ ++    
Sbjct: 463 IGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERE 522

Query: 534 SS------SLDEQF---EIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGL 584
           +S      SL  +    +I F + + +   +  +++  EFTTK+I Y ++G +L  +SG+
Sbjct: 523 TSLNPSGNSLGRENRGPQIVFPVPAVE---DPSMNKSVEFTTKSISYSFKGIILKYISGI 579

Query: 585 DLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP 644
           DLSCN L G IP ++GNL+ IQ LNLSHN L G IP TFSNLK +ESLDLS N LNG+IP
Sbjct: 580 DLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIP 639

Query: 645 HQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP--ICRS--PA 700
            QL++L  L  FSVA+NNLSG+ PE  AQF+TFN+S YEGN  LCG PL     R+  P+
Sbjct: 640 RQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPS 699

Query: 701 TMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITS 760
            +  +    + ++ +IDM++F +TF+ +Y++V+  I  +LY+N  WRR WFYF+   I +
Sbjct: 700 PLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINN 759

Query: 761 SYYFVVDNL-IPTRF 774
            YYF+VDNL +P RF
Sbjct: 760 CYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 356/823 (43%), Positives = 477/823 (57%), Gaps = 72/823 (8%)

Query: 7    LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQG-FPHFKSLEHLGMMST 65
            LE L L G+  + S+  S+   F SLK+L +SY  + G     G F +  +LE L +  +
Sbjct: 192  LENLHLRGNQYNDSIFSSLTG-FSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGS 250

Query: 66   RIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS 125
             + LN  FL  I   +P+LK LS     L   +  +  +GLC   +L++L++  N+L GS
Sbjct: 251  SLPLN--FLHNIG-VLPALKVLSAGECDL---NGTLPAQGLCGLKNLEQLFLSENNLEGS 304

Query: 126  LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSR 185
            LP C  NL+SL++LDVS NQ  G+I+SSPL +L S+E + LSNNHFQ+PIS++P  NHS 
Sbjct: 305  LPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSS 364

Query: 186  LKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDG--VTFPKFLYHQHDLETVEL 243
            L+ F +DNN L  E    H L  P FQL   SLS    +   V  P FLY+QHDL  ++L
Sbjct: 365  LRFFSSDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDL 423

Query: 244  SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPI 303
            S     G FP+WLL+NNT+L QL L  +S  G  +L  H +  +  +DISNNN  G IP 
Sbjct: 424  SQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPK 483

Query: 304  EIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT---------------- 347
             I  +  +L+    + N L G IPS LGN   L +LDLSNN L+                
Sbjct: 484  NICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQFITLTFLKLS 543

Query: 348  -----GEIPEHLAVGCVNLQSLALSNNN--------------LQEGLYLNNNSLSGKIPR 388
                 G++P  + V    L  L LS+NN              +   L L+NN  SG +PR
Sbjct: 544  NNNLGGQLPASM-VNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPR 602

Query: 389  WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHL 448
            W  NLT +  I +  NH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF+P  I  VHL
Sbjct: 603  WFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHL 662

Query: 449  SKNMLHGQLKR-----------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQ 497
            SKN L G L             DL  N   GSI +W+  LS LS L+L  NN +GE LVQ
Sbjct: 663  SKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQ 722

Query: 498  LCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSS----------SLDEQFEIFFSI 547
            LC L QL +LD+S N L GP+P C  N +  ESY  +S           +++ +  F   
Sbjct: 723  LCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQT 782

Query: 548  ESPQGN--VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRI 605
             +  G+  +     E+ EFT K++ Y Y+GK+LS +SG+DLS NK  G IPP++GNL+ +
Sbjct: 783  RALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSEL 842

Query: 606  QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665
              LNLSHN+L G IP+TFSNLK +ES DLS N L+G IPH+L E+ TLEVFSVA+NNLSG
Sbjct: 843  LALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSG 902

Query: 666  EIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNER--DDNLIDMDSFFI 723
            E PE   QF TF+ESSYEGN FLCG PL    S        + N++  DD  IDM+ F+I
Sbjct: 903  ETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYI 962

Query: 724  TFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVV 766
            +    Y++V+  I  +LY+N YWR  WF F++  I + + F++
Sbjct: 963  SLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 364/869 (41%), Positives = 485/869 (55%), Gaps = 113/869 (13%)

Query: 1    LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVV--HGQGFPHFKSLE 58
            +   + L+ L L G+ L  S  + I+S    L NL +SY   N  +  H +G  + KSL 
Sbjct: 145  MTGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLDLSYNIFNDSILSHLRGLSYLKSLN 204

Query: 59   HLGMM--------------ST-------RIALNTNFLQVISESMPSLKYLSLSYSTL-GT 96
              G M              ST       R +L  NFLQ I  ++P LK LS++   L GT
Sbjct: 205  LSGNMLLGSTTVNGTFFNSSTLEELYLDRTSLPINFLQNIG-ALPDLKVLSVAECDLHGT 263

Query: 97   NSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLI 156
                +  +G C   +L++L +  N+L GSLP C+ NL+SL++LDVS NQ TG+I+S PL 
Sbjct: 264  ----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLT 319

Query: 157  HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRL 216
            +LTS+E L LSNN F++PIS++P  NHS LK F ++NN+L  E     +L  P FQL   
Sbjct: 320  NLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVFF 378

Query: 217  SLSSGYED-GVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 275
             LS   E   V  P FLY+Q+D+  ++LSH  +   FP+WLL+NNT+L QL L N+S  G
Sbjct: 379  RLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVG 438

Query: 276  PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF 335
              +L  H +  +  LDISNNN  G IP +I  + P+++    + N   G IPS LGN+  
Sbjct: 439  TLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISS 498

Query: 336  LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYL----- 377
            L+ILDLSNN L+    E L      +  L LSNNNL              E LYL     
Sbjct: 499  LKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNF 554

Query: 378  --------------------NNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
                                ++N  SG +PRWL N T L  I +  N+ +GPI  +FC+L
Sbjct: 555  WGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKL 614

Query: 418  DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK-----------RDLSYNRL 466
            + L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L             DL  N  
Sbjct: 615  NQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFYNNSSLVTMDLRDNNF 674

Query: 467  NGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 526
             GS P+W+  LS LS L+L  N+ +GE+ VQLC L QL +LD+S N L GP+P C  N T
Sbjct: 675  TGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLT 734

Query: 527  LYESYSNSSS------LDEQFE-IFFSIESP----------QGNVEKQIHEIFEFTTKNI 569
              ES   + +      L    E  ++    P          +G +     E+ EFTTKN+
Sbjct: 735  FKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNM 794

Query: 570  VYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV 629
             Y Y+GK LS +SG+DLS N  +G IPP+ G+L++I +LNLSHN+L G IP+TFSNLK +
Sbjct: 795  YYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQI 854

Query: 630  ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689
            ESLDLS N LNG IP QL ++ TLEVFSVA+NNLSG  PE   QF TF+ES YEGN FLC
Sbjct: 855  ESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLC 914

Query: 690  GLPL------------PICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIV 737
            G PL            P+   P          + DD  IDM+ F+I F   Y +V+  IV
Sbjct: 915  GPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIV 974

Query: 738  IILYVNSYWRRRWFYFVEMWITSSYYFVV 766
            ++LY++ YWRRRW YF+E  I + YYFVV
Sbjct: 975  VVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 350/827 (42%), Positives = 471/827 (56%), Gaps = 84/827 (10%)

Query: 10  LTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQG-FPHFKSLEHLGMMSTRIA 68
           L+ +G +   S+L        +LK+L +S    NG+  G G F +  +LE L + +T  +
Sbjct: 130 LSANGFNNDKSILSCFNGNLSTLKSLDLS---ANGLTAGSGTFFNSSTLEELYLDNT--S 184

Query: 69  LNTNFLQVISESMPSLKYLSLSYSTL-GTNSSRILDRGLCSPVHLQELYIGSNDLRGSLP 127
           L  NFLQ I  ++P+LK LS++   L GT    +  +G C   +L++L +  N+  GSLP
Sbjct: 185 LRINFLQNIG-ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLP 239

Query: 128 WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLK 187
            C+ NL+SL++LDVS NQ TG+ +S PL +L S+E L LSNN F++PIS++P  NHS LK
Sbjct: 240 DCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLK 299

Query: 188 TFYADNNELNAEITQSHSLTAPNFQLS--RLSLSSGYEDGVTFPKFLYHQHDLETVELSH 245
            F ++NN L  E     +L  P FQL   RLS S   E     P FLY+Q DL  ++LSH
Sbjct: 300 FFSSENNRLVTEPVAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSH 358

Query: 246 IKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEI 305
             + G FP+WLL+NNT+L QL L  +   G  +L  H +  +  LDISNNN  G I  +I
Sbjct: 359 NNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDI 418

Query: 306 GDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365
             + P+L+    + N   G IPS LGN+  L  LDLSNN L+    E L +  + L + +
Sbjct: 419 CLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLTIPVLKLSNNS 478

Query: 366 LS--------NNNLQEGLYLNNNSLSGKI-------------------------PRWLGN 392
           L         N++  + LYLN N+ SG+I                         PR   N
Sbjct: 479 LGGQIPTSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVN 538

Query: 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 452
            T L+ + +  NH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN 
Sbjct: 539 FTDLRVLDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNR 598

Query: 453 LHGQLK-----------RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501
           L G L             DL  N L GSIP+W+   S LS L+L  N+ +GE+ VQLC L
Sbjct: 599 LSGPLTYGFFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLL 658

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI--- 558
            QL +LD+S N L GP+P C  N T  ES S  + +D    I   +ES +    K +   
Sbjct: 659 EQLSILDVSQNQLSGPLPSCLGNLTFKES-SQKARMDLGASIV--LESMEKAYYKTMGPP 715

Query: 559 -----------------HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGN 601
                             E+ EF TKN+ Y Y+G +LS +SG+DLS N   G IP + GN
Sbjct: 716 LVDSVYLLGKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGN 775

Query: 602 LTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661
           L+ I++LNLSHN+    IP+TFSNLK +ESLDLS N LNG IP QL E+ TLEVFSVA+N
Sbjct: 776 LSEIRSLNLSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHN 835

Query: 662 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDD-NLIDMD 719
           NLSG  PE   QF TF+ES YEGN FLCG PL   C      S+    +E+ D   IDM+
Sbjct: 836 NLSGWTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDME 895

Query: 720 SFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVV 766
            F+I+F   Y +V+  I  +LY+N YWRRRW YF+E  I + YYF+V
Sbjct: 896 FFYISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/769 (44%), Positives = 469/769 (60%), Gaps = 80/769 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPH-FKSLEH 59
           L N ++LE L L+G  L  + +Q + ++  SLK LS+   EV+G+V  QGF +  K+LEH
Sbjct: 169 LQNLSSLEKLYLNGCFLDENSIQILGAL-SSLKYLSLY--EVSGIVPSQGFLNILKNLEH 225

Query: 60  LGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
           L   S+   L+ + LQ I  ++ SLK L L    L       L  GLC+  +LQEL +  
Sbjct: 226 L--YSSNSTLDNSILQSIG-TITSLKILELVKCRLNGQ----LPIGLCNLNNLQELDMRD 278

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
           ND+ G L  C+ NLTSL+ LD+SS                         NH +IP+SL P
Sbjct: 279 NDISGFLIPCLANLTSLQRLDLSS-------------------------NHLKIPMSLSP 313

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239
           L+N S+LK+F+  +NE+ AE    H+L +P FQL  L LS+  +    FP+FLYHQ +L+
Sbjct: 314 LYNLSKLKSFHGLDNEIYAE-EDDHNL-SPKFQLQSLYLSNHGQGARAFPRFLYHQLNLQ 371

Query: 240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRG 299
           +++L++I+M G+FP WL+ENNT L+ L L N SL GPF LP +SH  L +L IS N  +G
Sbjct: 372 SLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGPFLLPKNSHMNLSILSISMNYLQG 431

Query: 300 HIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359
            IP EIG  LP L + + S N  +GSIPSSL NM  L+ LDLSNN LTG IP+HL     
Sbjct: 432 QIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLLRDLDLSNNVLTGRIPKHLTT--- 488

Query: 360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDL 419
              SL L N      L L+NNSL G IP  + N + LQ + + NN+L   IP     +  
Sbjct: 489 ---SLCLFN-----FLILSNNSLQGAIPDSMSNCSSLQLLDVSNNNLSPRIPGWIWSMSF 540

Query: 420 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKR-----------DLSYNRLN 467
           L  LD+S NN SG LP      S ++ V+LS+N L G + +           DLS+N L 
Sbjct: 541 LDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYNFSTLLTLDLSHNNLI 600

Query: 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527
           G+IP+W+  LS+L +L+L +N LEGE+ +QLC+L+ L L+DLS+N+L G I  C  +   
Sbjct: 601 GTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLSGNILSCMTSLAP 660

Query: 528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS 587
           + + ++++           +E+ Q        +  EFTTKN+  IY+G ++ L SG+D S
Sbjct: 661 FSALTDATI----------VETSQ--------QYLEFTTKNVSLIYRGSIVKLFSGIDFS 702

Query: 588 CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQL 647
           CN   G IPP+I NL++I+ LNLSHN LIG IP TFS LK +ESLDLS+NKL+G+IP QL
Sbjct: 703 CNNFTGKIPPEIENLSKIKALNLSHNSLIGPIPPTFSRLKEIESLDLSHNKLDGEIPPQL 762

Query: 648 VELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEAS 706
            EL +LE+FSVA+NNLSG+ P   AQFATF ES Y+ N FLCG PLP IC +    S  S
Sbjct: 763 TELFSLEIFSVAHNNLSGKTPARVAQFATFEESCYKDNPFLCGEPLPKICGASMLPSPTS 822

Query: 707 IGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVE 755
           + NE +   IDM+ F+++F  +Y++V+  IV +LY+N YWRR WF+F E
Sbjct: 823 MNNEDNGGFIDMEVFYVSFGIAYIMVLVVIVAVLYINPYWRRAWFHFTE 871

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 357/837 (42%), Positives = 473/837 (56%), Gaps = 96/837 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L  F++L+ L L G+ L  S L+ +     SL++L     +   +  G  F +  +LE L
Sbjct: 147 LTGFSSLKSLDLSGNQLTASGLRKL-DFLQSLRSLKTLSLKDTNLSQGTFF-NSSTLEEL 204

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTL-GTNSSRILDRGLCSPVHLQELYIGS 119
            + +T + +N  FLQ  + ++P+LK LS+    L GT    +  +G C   +L++L +  
Sbjct: 205 HLDNTSLPIN--FLQN-TRALPALKVLSVGECDLHGT----LPAQGWCELKNLKQLDLAR 257

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
           N+  G+LP C+ NL+SL +LDVS NQ TG+I S PL +L S+E L LSNN F++P S++P
Sbjct: 258 NNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSMKP 317

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED-GVTFPKFLYHQHDL 238
             NHS LK F ++NN L  E     +L  P FQL  LSL    E   V  P FLY+Q+DL
Sbjct: 318 FMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALNVHIPDFLYYQYDL 376

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR 298
             ++LSH  + G FP+WLL+NNT++ QL L ++S  G  +LP H +  +  LDISNNN  
Sbjct: 377 RVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMN 436

Query: 299 GHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGC 358
             IP +I  +LP+L       N   G IPS LGN+  L +LDLSNN L+    E L    
Sbjct: 437 SQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLTT-- 494

Query: 359 VNLQSLALSNNNLQ-------------EGLYLN-------------------------NN 380
             L  L LSNNNL              E LYLN                         NN
Sbjct: 495 --LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNN 552

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF-CQLDLLQILDISDNNISGSLPSCFH 439
             SG +PRW  N T L+ I +  NH +GPIP +F C+ D L+ LD+S+NN+SG +PSCF 
Sbjct: 553 QFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFS 612

Query: 440 PLSIKQVHLSKNMLHGQLK-----------RDLSYNRLNGSIPDWVDGLSQLSHLILGHN 488
           P  I  +HLSKN L G L             DL  N    SIP+W+  LS LS L+L  N
Sbjct: 613 PPQITHLHLSKNRLSGPLTYGFYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRAN 672

Query: 489 NLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLD-EQFEIFFSI 547
           + +           QL +LD+S N L GP+P C  N T  ES S  + LD   F+I  SI
Sbjct: 673 HFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKES-SQKAILDFVIFDISRSI 721

Query: 548 ESP----------------QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKL 591
           E                  +G     I E+ EFTTK + Y Y+GKVL+ +SG+DLS N  
Sbjct: 722 EKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNF 781

Query: 592 IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 651
           +G IPP+ GNL+ I +LNLSHN+L G IP+TFSNLK +ESLDLS N LNG IP QL E+ 
Sbjct: 782 VGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEIT 841

Query: 652 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNE 710
           TLEVFSVA+NNLSG+ PE   QF TF+ES YEGN FLCG PL   C   A  S+    +E
Sbjct: 842 TLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDE 901

Query: 711 R-DDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVV 766
           + DD  +DM+ F+I+F   Y +V+  I  +LY+N YWRRRW +F+E  I + YYF V
Sbjct: 902 QGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/737 (45%), Positives = 425/737 (57%), Gaps = 80/737 (10%)

Query: 105  GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
            G C   +L++L +  N+  GSLP C+ NL+SL++LD+S NQ TG+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 165  YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED 224
             LSNN F++P S++P  NHS LK F  +NN L  E      L  P FQL   SLS   E 
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEA 685

Query: 225  -GVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHS 283
              V  P FLY+Q+ L  ++LSH  + G FP+WLL+NNT+L QL L  +S+ G  +L  H 
Sbjct: 686  LNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHP 745

Query: 284  HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSN 343
            + ++  LDISNNN  G IP +I  + P+L     + N   G IPS LGNM  L +LDLSN
Sbjct: 746  YPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSN 805

Query: 344  NHLTGEIPEHLAVGCVNLQSLALSNNNL-------------QEGLYL------------- 377
            N L+    E L      +  L LSNNNL              E LYL             
Sbjct: 806  NQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSP 861

Query: 378  ------------NNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF-CQLDLLQILD 424
                        +NN  SG +PRW  N T L  I +  NH EGPI   F C+LD L+ LD
Sbjct: 862  LNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLD 921

Query: 425  ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK-----------RDLSYNRLNGSIPDW 473
            +S+NN+ G +PSCF+   I  VHLSKN L G LK            DL  N   GSIP+W
Sbjct: 922  LSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIPNW 981

Query: 474  VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSN 533
            V  LS LS L+L  N+L+GE+ VQLC L QL +LD+S N L GP+P C +N T  ES   
Sbjct: 982  VGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQK 1041

Query: 534  SSSLDEQFEIFFSIES--------PQ---------GNVEKQIHEIFEFTTKNIVYIYQGK 576
            +      F +   IE         PQ         G       E+ EFTTKN+ Y Y+GK
Sbjct: 1042 ALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKGK 1101

Query: 577  VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
            +LS +SG+DLS N  +G IPP+ GNL+ I +LNLSHN+L G IP+TFSNLK +ESLDLS 
Sbjct: 1102 ILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLSY 1161

Query: 637  NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-I 695
            N  NG IP QL E+ TLEVFSVA+NNLSG+ PE   QF TF+ES YEGN FLCG PL   
Sbjct: 1162 NNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNN 1221

Query: 696  CRSPATMSEASIGN------ERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRR 749
            C     +S+  +        + DD  IDM+ F+I+F+  Y +V+  I  +LY+N YWRRR
Sbjct: 1222 CSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRRR 1281

Query: 750  WFYFVEMWITSSYYFVV 766
            W YF+E  I + YYFVV
Sbjct: 1282 WLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 351/833 (42%), Positives = 471/833 (56%), Gaps = 115/833 (13%)

Query: 1    LHNFTNLEYLTLHGSSL----------HISLLQSIASIFPSLKNLSISYCEVNGVVHGQG 50
            L   ++L+ L L G+ L          ++ +LQS+ S +PSLK LS+    ++     QG
Sbjct: 302  LRGLSHLKSLNLSGNMLLGSTTINGLRNLDILQSLRS-WPSLKTLSLKDTNLS-----QG 355

Query: 51   -FPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTL-GTNSSRILDRGLCS 108
             F +  +LE L + +T + +N  FLQ  + ++P+LK LS++   L GT    +  +G C 
Sbjct: 356  TFFNSSTLEELHLDNTSLPIN--FLQN-TGALPALKVLSVAECDLHGT----LPAQGWCE 408

Query: 109  PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
              +L++L +  N+  G+LP C+ NL+SL++LDVS NQ TG+I+  PL  L S+E L LSN
Sbjct: 409  LKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSN 468

Query: 169  NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED---G 225
            N F++PIS++P  NHS LK F ++NN L  E     +L  P FQL    LSS        
Sbjct: 469  NLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRLSSSPTSEALN 527

Query: 226  VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHK 285
            V    FLY+Q+DL T++LSH  + G FP+WLL+NNT++ QL L  +S  G  +L  H + 
Sbjct: 528  VEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYP 587

Query: 286  RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
             +  LDISNNN  G IP +I  + P+L++   + N   G IPS LGN   L  LDLSNN 
Sbjct: 588  NMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQ 647

Query: 346  LTGEIPEHLAVGCVNLQSLALSNNNL-------------QEGLYL--------------- 377
            L+    E L      +Q L LSNN+L              + LYL               
Sbjct: 648  LSTVKLEQLTT----IQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLY 703

Query: 378  ----------NNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 427
                      +NN  SG +PR   N T+ + + +  N  +GPIP +FC+LD L+ LD+SD
Sbjct: 704  GWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSD 763

Query: 428  NNISGSLPSCFHPLSIKQVHLSKNMLHGQLK-----------RDLSYNRLNGSIPDWVDG 476
            N +SG +PSCF+P  I  +HLSKN L G L             DL  N   GSIP+W+  
Sbjct: 764  NYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYGFYNSSSLVTMDLRDNSFIGSIPNWIGN 823

Query: 477  LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS 536
            LS LS L+L  NN +GE+ VQLC L QL +LD+S N L GP+P C  N TL E   N+  
Sbjct: 824  LSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPENARG 883

Query: 537  LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP 596
                  I+FS+                           GKVLS + G+DLS N  +G IP
Sbjct: 884  ----SRIWFSV--------------------------MGKVLSYMYGIDLSNNNFVGAIP 913

Query: 597  PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656
            P+ GNL++I +LNLSHN+L G IP+TFSNLK +ESLDLS N LNG IP QL E+ TLEVF
Sbjct: 914  PEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTLEVF 973

Query: 657  SVAYNNLSGEIPEWTAQFATF-NESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DD 713
            SVAYNNLSG  PE   QF TF +E+ YEGN FLCG PL   C   A   +    +E+ DD
Sbjct: 974  SVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDD 1033

Query: 714  NLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVV 766
              IDM+ F+I+F   Y +V+  I  +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 1034 GFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 319/704 (45%), Positives = 412/704 (58%), Gaps = 75/704 (10%)

Query: 133 LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192
           ++SL++LDVS NQ TG+I+  PL +L S+E L LSNN F++PIS++P  NHS LK F ++
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 193 NNELNAEITQSHSLTAPNFQLS--RLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
           NN+L  E     +L  P FQL   RLS S   E     P FLY+Q DL  ++LSH  + G
Sbjct: 61  NNKLVTEPAAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITG 119

Query: 251 EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP 310
            FP+WLL+NNT+L QL L ++S  G  +L  H H  +  LDISNNN  G IP +I  + P
Sbjct: 120 MFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFP 179

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
           +L+    + N   G IPS LGN+  L  LDLSNN L+    E L    V    L LSNNN
Sbjct: 180 NLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNN 235

Query: 371 LQEG-------------LYLN-------------------------NNSLSGKIPRWLGN 392
           L                LYLN                         NN  SG +PR   N
Sbjct: 236 LGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVN 295

Query: 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 452
            + L  I +  NH +GPIP +FC+ D L+ LD+S+NN+SG +PSCF P  I  VHLSKN 
Sbjct: 296 FSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNR 355

Query: 453 LHGQLK-----------RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501
           L G L             DL  N   GSIP+W+  LS LS L+L  N+ +GE+ +QLC L
Sbjct: 356 LSGPLTYAFFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLL 415

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNS------SSLDEQFE-IFFSIESPQ--- 551
            QL +LD+S+N L GP+P C  N T  +S   +        + E  E  ++ I  P    
Sbjct: 416 EQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIEKAYYEIMGPPLVD 475

Query: 552 --GNVEKQI-----HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR 604
              N+          E+ EFTTKN+ Y Y+GKVL+ + G+DLS N  IG IPP+ GNL++
Sbjct: 476 SVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLSK 535

Query: 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           I ++NLSHN+L G IP+TFSNL H+ESLDLS N LNG IP Q  E+ TLEVFSVA+NNLS
Sbjct: 536 ILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNLS 595

Query: 665 GEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDMDSFF 722
           G+ PE   QF TF+ES YEGN FLCG PLP  C   A +S+    +E+ DD  IDM+ F+
Sbjct: 596 GKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDMEFFY 655

Query: 723 ITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITSSYYFVV 766
           I+F   Y +V+  I  +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 656 ISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.931	0.723	0.284	1.6e-64
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.796	0.660	0.306	1.8e-63
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.747	0.638	0.323	5e-63
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.765	0.666	0.315	9.1e-61
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.747	0.601	0.3	6.8e-58
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.802	0.575	0.291	2.3e-54
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.779	0.532	0.306	1.1e-53
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.793	0.631	0.304	1.4e-50
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.743	0.504	0.293	1.3e-47
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.756	0.726	0.299	3.1e-46

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.6e-64, Sum P(2) = 1.6e-64
 Identities = 227/799 (28%), Positives = 355/799 (44%)

Query:     1 LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQG-FPHFKSLEH 59
             L + TN+E L L  +  + S+          LK L +S  E +  V  QG F   K L  
Sbjct:   194 LRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFAKTKPLSG 253

Query:    60 LGMMST--RIALNTNFLQVISEXXXXXXXXXXXXXXXXXXXXRILDRGLCSPVHLQELYI 117
                      + L+ N L                           +   L +   L+ L +
Sbjct:   254 TCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSL 313

Query:   118 GSNDLRGSLPW-CMTNLTSLRIL--DVSSNQLTGSISSS--PLIHLT-------SIEKL- 164
               N+  G      + NL+ L++L  D  SN L     +S  P   L        ++EK+ 
Sbjct:   314 FGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVP 373

Query:   165 -YLSNNHFQIPISLEPLFNHSRLKTFYADNN-ELNAEITQSHSLTAPNFQLSRLSLSSGY 222
              +L +      + L     H    ++  +NN +L   + Q++S T+  FQL + + +  +
Sbjct:   374 HFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS--FQLPKSAHNLLF 431

Query:   223 EDGVTFPKF--LYHQH------DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG 274
              + V+  KF  L+ Q+       L  V L++    G  P+  L+N   +  L L ++   
Sbjct:   432 LN-VSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPS-SLDNMKSIEFLDLSHNRFH 489

Query:   275 GPFRLPIHSHK---RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLG 331
             G  +LP    K    L +L +S+N   G +  E  +    L++ +   N   G+I     
Sbjct:   490 G--KLPRRFLKGCYNLTILKLSHNKLSGEVFPEAAN-FTRLWVMSMDNNLFTGNIGKGFR 546

Query:   332 NMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLG 391
             ++  L +LD+SNN LTG IP  +                    L L+NN L G+IP  L 
Sbjct:   547 SLPSLNVLDISNNKLTGVIPSWIG------------ERQGLFALQLSNNMLEGEIPTSLF 594

Query:   392 NLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKN 451
             N+++LQ + + +N L G IP               +NN+SG +P                
Sbjct:   595 NISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPD--------------T 640

Query:   452 MLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXX 511
             +L   +  DL  NRL+G++P++++    +S L+L  NN  G++                 
Sbjct:   641 LLLNVIVLDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSN 699

Query:   512 XXXHGPIPPCFDNTTL----------YESYSNSSSLDEQ--FEIFFSIESPQGNVEKQIH 559
                +G IP C  NT+           Y+  S   +  +   FE    I+      E    
Sbjct:   700 NKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQ 759

Query:   560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLI 619
                EF TK+    Y G  L LL G+DLS N+L G IP ++G L  ++ LNLSHN+L G+I
Sbjct:   760 TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVI 819

Query:   620 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 679
               +FS LK+VESLDLS N+L G IP QL ++ +L VF+V+YNNLSG +P+   QF TF  
Sbjct:   820 LESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFET 878

Query:   680 SSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVII 739
              SY GN  LCG  + I  +         G E D++ +DM+SF+ +F  +YV ++  I+  
Sbjct:   879 QSYFGNPLLCGKSIDISCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILAS 938

Query:   740 LYVNSYWRRRWFYFVEMWI 758
             L  +S W R WFY V+ ++
Sbjct:   939 LSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.8e-63, Sum P(2) = 1.8e-63
 Identities = 212/691 (30%), Positives = 318/691 (46%)

Query:   112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN--N 169
             L+ L + SN L G LP   ++L SL  L +S N   GS S +PL +LT+++ + +    +
Sbjct:   272 LRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCS 331

Query:   170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
               +IP  L  L+   +L+     +N L+  I     L   N +L  L L +        P
Sbjct:   332 LEKIPSFL--LYQ-KKLRLVDLSSNNLSGNIPTW--LLTNNPELEVLQLQNNSFTIFPIP 386

Query:   230 KFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGM 289
               +   H+L+  + S   + G+FP  +      L +L+  N+   G F   I   K +  
Sbjct:   387 TMV---HNLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISF 442

Query:   290 LDISNNNFRGHIP-------IEI-----------GDVLP------SLYLFNNSMNALDGS 325
             LD+S NNF G +P       + I           G  LP      SL +     N   G+
Sbjct:   443 LDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGN 502

Query:   326 IPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGK 385
             I   L N   L+ILD+SNN L+G IP  L                  + + ++NN L G 
Sbjct:   503 IGGGLSNSTMLRILDMSNNGLSGAIPRWL------------FEFPYLDYVLISNNFLEGT 550

Query:   386 IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQ 445
             IP  L  + +L ++ +  N   G +P               +NN +G +P      S++ 
Sbjct:   551 IPPSLLGMPFLSFLDLSGNQFSGALP-SHVDSELGIYMFLHNNNFTGPIPDTLLK-SVQI 608

Query:   446 VHLSKNMLHGQLKR--D--------LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVX 495
             + L  N L G + +  D        L  N L GSIP  +  LS +  L L  N L G + 
Sbjct:   609 LDLRNNKLSGSIPQFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIP 668

Query:   496 XXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI--ESPQGN 553
                                   IPP F  T+L      S+ L ++ E+  S   E+    
Sbjct:   669 SCLSNLSFGRLQEDAMALN---IPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKF 725

Query:   554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN 613
               KQ ++ +   ++     +   +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN
Sbjct:   726 AAKQRYDSYSGRSE-----FSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHN 780

Query:   614 DLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 673
              L+G IPS+FS L  VESLDLS+N L G IP  L  L +L VF V+ NNLSG IP+   Q
Sbjct:   781 SLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-Q 839

Query:   674 FATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDN--LIDMDSFFITFTTSYV 730
             F TF E SY GN  LCG P    C +  +  EA  G E +D+   IDM  F+ +  + YV
Sbjct:   840 FNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYV 899

Query:   731 IVIFAIVIILYVNSYWRRRWFYFVEMWITSS 761
               +  +++++  +  WRR W   V+ +I S+
Sbjct:   900 TALIGVLVLMCFDCPWRRAWLRIVDAFIASA 930

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 5.0e-63, Sum P(2) = 5.0e-63
 Identities = 204/631 (32%), Positives = 291/631 (46%)

Query:   107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
             C   +LQEL +   +  G LP C  NL  LR LD+SSNQLTG+I  S    L S+E L L
Sbjct:   217 CEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLESLEYLSL 275

Query:   167 SNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGV 226
             S+N F+   SL PL N ++LK F   + +   ++ +  S   P FQLS L L     + +
Sbjct:   276 SDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQV-KIESTWQPLFQLSVLVLRLCSLEKI 334

Query:   227 TFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR 286
               P FL +Q +L  V+LS  +++G  PTWLLENN +L  L L N+S    F++P   H  
Sbjct:   335 --PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN- 390

Query:   287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
             L +LD S NN  G  P   G VLP+L   N S N   G+ PSS+G M  +  LDLS N+L
Sbjct:   391 LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNL 450

Query:   347 TGEIPEHLAVGCVXXXXXXXXXXXXXEG-------------LYLNNNSLSGKIPRWLGNL 393
             +GE+P+     C                             L +NNN  +GKI   L  L
Sbjct:   451 SGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTL 510

Query:   394 TWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQV-HLSKNM 452
               L  + M NN LEG +P              S N +SG+LPS  H +S+  V  L  N 
Sbjct:   511 VDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPS--H-VSLDNVLFLHNNN 567

Query:   453 LHGQLKR---------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXX 503
               G +           DL  N+L+G+IP +VD    +S L+L  N+L G +         
Sbjct:   568 FTGPIPDTFLGSIQILDLRNNKLSGNIPQFVD-TQDISFLLLRGNSLTGYIPSTLCEFSK 626

Query:   504 XXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFE 563
                        +G IP CF+N +     +    +   + +  ++ES      K       
Sbjct:   627 MRLLDLSDNKLNGFIPSCFNNLSF--GLARKEEITNYY-VAVALESFYLGFYKST----- 678

Query:   564 FTTKNIVYIYQGKV-LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622
             F  +N    Y     + +        +  IG      G L  +  L+LS N+L G+IP+ 
Sbjct:   679 FVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAE 738

Query:   623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWT--AQFATFNE 679
               +L  + +L+LS+N L+  IP    +L+ +E   ++YN L G IP + T     A FN 
Sbjct:   739 LGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNV 798

Query:   680 SSYEGNTFLCGLPLPICRSPATMSEAS-IGN 709
             S Y     L G+ +P  +   T  E S +GN
Sbjct:   799 S-YNN---LSGI-IPQGKQFNTFDENSYLGN 824

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 9.1e-61, Sum P(2) = 9.1e-61
 Identities = 204/646 (31%), Positives = 300/646 (46%)

Query:   136 LRILDVS-SNQLTGSISSSPLIH--LTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192
             L+I++ + S  L   +SS  L H  L  I          ++ I L          T+  +
Sbjct:   265 LQIVETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRV-IDLSNNILSGVFPTWLLE 323

Query:   193 NN-ELNAEITQSHS---LTAPNF--QLSRLSLSSGYEDGVTFPKFL-YHQHDLETVELSH 245
             NN EL A + Q++S   LT P    +L  L LS    +    PK +      L  + LS+
Sbjct:   324 NNTELQALLLQNNSFKTLTLPRTMRRLQILDLSVNNFNN-QLPKDVGLILASLRHLNLSN 382

Query:   246 IKMNGEFPTWLLE-NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIE 304
              +  G  P+ +    N +   LS  N S   P  L    +  L  L +S+N F G I  +
Sbjct:   383 NEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYS-LSWLKLSHNRFSGPIIRK 441

Query:   305 IGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXX 364
               D    + L  ++ N   G IP +L N++ L ++DLSNN LTG IP  L          
Sbjct:   442 SSDETSLITLIMDN-NMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLG--------- 491

Query:   365 XXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXX 424
                     E L ++NN L G IP  L N+ +L  + +  N L G +P+            
Sbjct:   492 ----NFFLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLR-SSSDYGYILD 546

Query:   425 XSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK--RD--------LSYNRLNGSIPDWV 474
               +NN++GS+P       ++ + L  N L G +   R         L  N L G IP  +
Sbjct:   547 LHNNNLTGSIPDTLW-YGLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLTGKIPVEL 605

Query:   475 DGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLY-ESYSN 533
              GLS +  L   HN L   +                      P     +   +Y E Y  
Sbjct:   606 CGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYE 665

Query:   534 SSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG 593
             S  + ++F + +S++    NV+       EF  K    +Y    L+ + GLDLS N+L G
Sbjct:   666 SLIVSDRFSLDYSVDF---NVQ------VEFAVKQRYDLYMRGTLNQMFGLDLSSNELSG 716

Query:   594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653
              IP ++G+L R+++LNLS N L G IP +FSNL+ +ESLDLS NKL+G IP QL  L++L
Sbjct:   717 NIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSL 776

Query:   654 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDD 713
              VF+V+YNNLSG IP+   QF TF E SY GN  LCG P        T+S      + D+
Sbjct:   777 VVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDE 835

Query:   714 N-LIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 758
             + L+D+   + +  T+YV V+   ++ L  +S WRR WF  V+ +I
Sbjct:   836 SGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 6.8e-58, P = 6.8e-58
 Identities = 186/620 (30%), Positives = 299/620 (48%)

Query:   155 LIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA-EITQS-HSLTAPNFQ 212
             L+H   +  + LS+N+    +    L N+++LK     NN   + +I +S H+L   +  
Sbjct:   362 LLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHNLLFLDVS 421

Query:   213 LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDS 272
              +  +       G  FP   Y    L T + ++ + N   P+  L N   ++ + L  +S
Sbjct:   422 ANDFNHLFPENIGWIFPHLRY----LNTSK-NNFQEN--LPS-SLGNMNGIQYMDLSRNS 473

Query:   273 LGGPF-RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLG 331
               G   R  ++    + +L +S+N   G I  E  +    L LF ++ N   G I   L 
Sbjct:   474 FHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDN-NLFTGKIGQGLR 532

Query:   332 NMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLG 391
             ++  L++LD+SNN+LTG IP  +                    L +++N L G IP  L 
Sbjct:   533 SLINLELLDMSNNNLTGVIPSWIG------------ELPSLTALLISDNFLKGDIPMSLF 580

Query:   392 NLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKN 451
             N + LQ + +  N L G IP +             DN +SG++P      +++ + L  N
Sbjct:   581 NKSSLQLLDLSANSLSGVIPPQH-DSRNGVVLLLQDNKLSGTIPDTLLA-NVEILDLRNN 638

Query:   452 MLHGQLK-----RDLSY-----NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXX 501
                G++      +++S      N   G IP  + GLS +  L L +N L G +       
Sbjct:   639 RFSGKIPEFINIQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNT 698

Query:   502 XXXXXXXXXXXXXHGPIP-PC--FDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
                             I  P   F+  +L++ +S++ +    F+   +++    + +   
Sbjct:   699 SFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAAT 758

Query:   559 HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
                 EF TK+    Y G  L LL G+DLS N+L G IP + G L  ++ LNLSHN+L G+
Sbjct:   759 QTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGV 818

Query:   619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
             IP + S+++ +ES DLS N+L G+IP QL EL +L VF V++NNLSG IP+   QF TF+
Sbjct:   819 IPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGR-QFNTFD 877

Query:   679 ESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVI 738
               SY GN  LCG P     +  +  EA  G E D+++IDM SF+++F  +YV ++  I+ 
Sbjct:   878 AESYFGNRLLCGQPTNRSCNNNSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILA 937

Query:   739 ILYVNSYWRRRWFYFVEMWI 758
              L  +S W R WFY V+ +I
Sbjct:   938 SLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 202/693 (29%), Positives = 301/693 (43%)

Query:   109 PVHLQELYIGSNDLRGSLPW-CMTNLTSLRILDVSSN----QLTGSISSSPLIHLTSIEK 163
             P  L+ L +  N+  GS  +  + N T L +  +SS     Q+    S +PL  L   + 
Sbjct:   405 PSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQL---KM 461

Query:   164 LYLSNNHFQIPISLEPLFNHSRLKTFY-ADNNELNAEITQSHSLTAPNFQLSRLSLSSGY 222
             LYLSN    +  ++     H R   F    +N+L    T    L   N +L  + LS   
Sbjct:   462 LYLSN--CSLGSTMLGFLVHQRDLCFVDLSHNKLTG--TFPTWLVKNNTRLQTILLSGNS 517

Query:   223 EDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIH 282
                +  P  +   H L+ +++S   +       +      LR ++  ++   G     I 
Sbjct:   518 LTKLQLPILV---HGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIG 574

Query:   283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
               K L +LD+S+N   G +PI       SL +   S N L G I S   N+  L  L L 
Sbjct:   575 EMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLD 634

Query:   343 NNHLTGEIPE------HLAVGCVXXXXXXXXX------XXXXEGLYLNNNSLSGKIPRWL 390
              N+ TG + E      +L +  +                     LY++ N L G  P +L
Sbjct:   635 GNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP-FL 693

Query:   391 GNLTWLQYIIMPNNHLEGPIP--VEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHL 448
                 W++ + + +N   G IP  V F            +N  +G +P           +L
Sbjct:   694 RQSPWVEVMDISHNSFSGSIPRNVNF---PSLRELRLQNNEFTGLVPG----------NL 740

Query:   449 SKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXX 508
              K    G    DL  N  +G I + +D  S+L  L+L +N+ +  +              
Sbjct:   741 FKAA--GLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLD 798

Query:   509 XXXXXXHGPIPPCFDNTTL-YESYSNSSSLDEQFEIFFSIESPQ---G---NVEKQIHE- 560
                    GPIP CF   +   E    + SL   F+  +    P    G   N++  +   
Sbjct:   799 LSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNG 858

Query:   561 -------IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN 613
                    + +F TK+    YQG +L  + GLDLS N+L G IP +IG+L  I++LNLS N
Sbjct:   859 YQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSN 918

Query:   614 DLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 673
              L G IP + S LK +ESLDLSNNKL+G IP  L +L +L   +++YNNLSGEIP +   
Sbjct:   919 RLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGH 977

Query:   674 FATFNESSYEGNTFLCGLPL-PICRSPATMSEASIG-------NERDDNLIDMDSFFITF 725
               TF+E SY GN  LCGLP    C S       S+        NE + N+IDM  F+ T 
Sbjct:   978 LVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTC 1037

Query:   726 TTSYVIVIFAIVIILYVNSYWRRRWFYFVEMWI 758
                Y+    A+   LY++S W R WFY V++ +
Sbjct:  1038 AAVYISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 202/659 (30%), Positives = 293/659 (44%)

Query:   109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
             P  LQ L I SN   G +P  + NLT L++L++S NQLTG I +S L +L S++ L+L  
Sbjct:   161 PSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPAS-LGNLQSLQYLWLDF 219

Query:   169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
             N  Q  +    + N S L    A  NE+   I  ++    P  ++  LSLS+    G T 
Sbjct:   220 NLLQGTLP-SAISNCSSLVHLSASENEIGGVIPAAYG-ALPKLEV--LSLSNNNFSG-TV 274

Query:   229 PKFLYHQHDLETVELSHIKMNGEF-PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
             P  L+    L  V+L     +    P       T L+ L L  + + G F L + +   L
Sbjct:   275 PFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSL 334

Query:   288 GMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
               LD+S N F G IP +IG++  L  L L NNS   L G IP  +     L +LD   N 
Sbjct:   335 KNLDVSGNLFSGEIPPDIGNLKRLEELKLANNS---LTGEIPVEIKQCGSLDVLDFEGNS 391

Query:   346 LTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNH 405
             L G+IPE L                  + L L  NS SG +P  + NL  L+ + +  N+
Sbjct:   392 LKGQIPEFLGY------------MKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENN 439

Query:   406 LEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKR----- 459
             L G  PVE            S N  SG++P     LS +  ++LS N   G++       
Sbjct:   440 LNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNL 499

Query:   460 ------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXX 513
                   DLS   ++G +P  + GL  +  + L  NN  G V                   
Sbjct:   500 FKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNS 559

Query:   514 XHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
               G IP  F    L  S S S +      I  SI    GN      E+ E  +  ++   
Sbjct:   560 FSGEIPQTFGFLRLLVSLSLSDN-----HISGSIPPEIGNCSAL--EVLELRSNRLMGHI 612

Query:   574 QGKVLSL--LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631
                +  L  L  LDL  N L G IPP+I   + + +L+L HN L G+IP +FS L ++  
Sbjct:   613 PADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTK 672

Query:   632 LDLSNNKLNGKIPHQLVELKT-LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 690
             +DLS N L G+IP  L  + + L  F+V+ NNL GEIP         N S + GNT LCG
Sbjct:   673 MDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCG 731

Query:   691 LPLPICRSPATMSEASIGNERDDNLIDMDSFFITFTTSYVIVIFAIVIILYVNSYWRRR 749
              PL   R  ++ +E   G ++   +I M    +    ++++ +F    + Y    WR++
Sbjct:   732 KPLNR-RCESSTAE---GKKKKRKMILM--IVMAAIGAFLLSLFCCFYV-YTLLKWRKK 783

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.4e-50, P = 1.4e-50
 Identities = 211/694 (30%), Positives = 306/694 (44%)

Query:   112 LQELYIGSNDLRG--SL-PWCMTNLTSLRILDVSSNQ--LTGSISSS--PLIHLTSIEKL 164
             L+ L +  N+  G  SL P  + NLT L++  +SS    L     S+  P   LT     
Sbjct:   310 LEYLSLSDNNFEGFFSLNP--LANLTKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALP 367

Query:   165 YLSNNH------FQIPISLEPLFNH---SRLKTFYADNN-ELNAEITQSHSLTA---PNF 211
             + S         +Q  + L  L ++     + T+  +NN EL     +++S T    P  
Sbjct:   368 FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQIPTI 427

Query:   212 --QLSRLSLSSGYEDGVTFPKFLYHQHD-LETVELSHIKMNGEFPTWLLENNTKLRQLSL 268
               +L  L  S+    GV  P  + H    L  +  SH    G  P+ + E N  +  L L
Sbjct:   428 VHKLQVLDFSANDITGV-LPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMND-ISFLDL 485

Query:   269 VNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIP 327
               ++  G   R  +     L  L +S+N+F G I + I   L SL +     N   G I 
Sbjct:   486 SYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPI-LPIQTRLTSLIVLRMHNNLFTGEIG 544

Query:   328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIP 387
               L  +  L I D SNN LTG I   +                    L L+NN L G +P
Sbjct:   545 VGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIM-----------LLLSNNLLEGTLP 593

Query:   388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVH 447
               L  +  L ++ +  N L G +P               +N+ +G LP            
Sbjct:   594 PSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPV----------- 642

Query:   448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXX 507
                 +L      DL  N+L+GSIP +V+    ++ L+ G NNL G +             
Sbjct:   643 ---TLLENAYILDLRNNKLSGSIPQFVNTGKMITLLLRG-NNLTGSIPRKLCDLTSIRLL 698

Query:   508 XXXXXXXHGPIPPCFDN--TTLYES-----YSNSSSLDE--QFEIF---FSIESPQGNVE 555
                    +G IPPC ++  T L E      +S   S  +  Q E +   F ++      +
Sbjct:   699 DLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYD 758

Query:   556 K--QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN 613
                 I EI EF  K     + G  L  + GLDLS N+L G IP ++G+L++++ LNLS N
Sbjct:   759 STYMIVEI-EFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRN 817

Query:   614 DLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 673
              L   IP+ FS LK +ESLDLS N L G IPHQL  L +L VF+V++NNLSG IP+   Q
Sbjct:   818 LLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQ 876

Query:   674 FATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER---DDN---LIDMDSFFITFT 726
             F TFN++SY GN  LCG P    C       EA  G E    DD+    IDM   + T  
Sbjct:   877 FNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTG 936

Query:   727 TSYVIVIFAIVIILYVNSYWRRRWFYFVEMWITS 760
             ++Y I +  I++++  +  WRR W   V+ +I S
Sbjct:   937 STYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 1.3e-47, P = 1.3e-47
 Identities = 183/623 (29%), Positives = 282/623 (45%)

Query:   106 LCSPVHLQELYIGSNDLRGSLPW-CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
             L  P+ L  L + S+ L G+LP    +  ++L  + +S N  TG + +   +    ++ L
Sbjct:   123 LLLPLTLTHLELSSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTL 182

Query:   165 YLSNNHFQIPISLEPLFNHSRLKTFYAD--NNELNAEITQSHSLTAPNFQLSRLSLSSGY 222
              LS N+   PIS   +   S +   Y D   N ++  I+ S  +   N  L  L+LS   
Sbjct:   183 DLSYNNITGPISGLTIPLSSCVSMTYLDFSGNSISGYISDS-LINCTN--LKSLNLSYNN 239

Query:   223 EDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIH 282
              DG   PK       L++++LSH ++ G  P  + +    L+ L L  ++  G     + 
Sbjct:   240 FDG-QIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLS 298

Query:   283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
             S   L  LD+SNNN  G  P  I     SL +   S N + G  P+S+   K L+I D S
Sbjct:   299 SCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFS 358

Query:   343 NNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402
             +N  +G IP  L  G               E L L +N ++G+IP  +   + L+ I + 
Sbjct:   359 SNRFSGVIPPDLCPGAASL-----------EELRLPDNLVTGEIPPAISQCSELRTIDLS 407

Query:   403 NNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRD- 460
              N+L G IP E              NNI+G +P     L ++K + L+ N L G++  + 
Sbjct:   408 LNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF 467

Query:   461 --------LSY--NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXX 510
                     +S+  NRL G +P     LS+L+ L LG+NN  GE+                
Sbjct:   468 FNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLN 527

Query:   511 XXXXHGPIPPCFDNTTLYESYSNSSSLDEQ-F--EIFFSIESPQGNVE------KQIHEI 561
                  G IPP        ++ S   S +   F   +  S +   G VE      +++ +I
Sbjct:   528 TNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQI 587

Query:   562 FEFTTKNIVYIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDL 615
                 + +   +Y G +LSL +       LDLS N+L G IP +IG +  +Q L LSHN L
Sbjct:   588 PSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQL 647

Query:   616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 675
              G IP T   LK++   D S+N+L G+IP     L  L    ++ N L+G IP+   Q +
Sbjct:   648 SGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLS 706

Query:   676 TFNESSYEGNTFLCGLPLPICRS 698
             T   + Y  N  LCG+PLP C++
Sbjct:   707 TLPATQYANNPGLCGVPLPECKN 729

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 3.1e-46, P = 3.1e-46
 Identities = 203/677 (29%), Positives = 311/677 (45%)

Query:   112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLI-HLTSIEKLYLSNNH 170
             L+ LY+ SN   G +P   +NL+ L ILD+S N+LTGS    P + +LT +  L LS NH
Sbjct:   124 LEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSF---PFVQNLTKLSILVLSYNH 180

Query:   171 FQ--IPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
             F   IP SL  L     L +     N L   I   +S T+   +   L  ++ +E  +  
Sbjct:   181 FSGTIPSSLLTL---PFLSSLDLRENYLTGSIEAPNSSTSSRLEFMYLG-NNHFEGQILE 236

Query:   229 P--KFLYHQH-DLETVELSH-IKMN--GEFPTW--LLENNTKLRQLSLVNDS---LG--- 274
             P  K +  +H DL  ++ S+ I +N    F +   L+ +   L   S+ +DS   L    
Sbjct:   237 PISKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSLLATSITSDSKIPLNLEN 296

Query:   275 ------GPFRLP--IHSHKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALDG 324
                   G    P  + +  +L  +D+SNN  +G +P    ++  L  + LFNN    L+G
Sbjct:   297 LVLLSCGLIEFPTILKNLTKLEHIDLSNNKIKGKVPEWFWNLPRLRRVNLFNNLFTDLEG 356

Query:   325 SIPSSLGNMKFLQILDLSNNHLTGEIPEH-LAVGCVXXXXXXXXXXXXXEGLYLNNNSLS 383
             S    L N   +++LDL+ NH  G  P+  L++  +                   NNS +
Sbjct:   357 S-EEVLVNSS-VRLLDLAYNHFRGPFPKPPLSINLLSAW----------------NNSFT 398

Query:   384 GKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSD---NNISGSLPSCFHP 440
             G IP    N + L  + +  N+L GPIP   C           +   NN+ GSLP  F  
Sbjct:   399 GNIPLETCNRSSLAILDLSYNNLTGPIPR--CLSDFQESLIVVNLRKNNLEGSLPDIFSD 456

Query:   441 LSI-KQVHLSKNMLHGQLKRDL-----------SYNRLNGSIPDWVDGLSQLSHLILGHN 488
              ++ + + +  N L G+L R L            +N++  + P W+  L  L  L L  N
Sbjct:   457 GALLRTLDVGYNQLTGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSN 516

Query:   489 NLEGEVXXXXXXXXXXXXXXXXXXXXH---GPIPP-CFDNTTLYESYSNSSSLDEQFEIF 544
                G +                    +   G +PP  F N   +E+  +S  ++E   I+
Sbjct:   517 KFHGPISPPDRGPLAFPKLRILEISDNNFTGSLPPNYFVN---WEA--SSLQMNEDGRIY 571

Query:   545 FSIESPQGNVEKQIHE-IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603
                     N    I+E   +   K + ++ QGKVL+  + +D S NKL G IP  IG L 
Sbjct:   572 MG----DYNNPYYIYEDTVDLQYKGL-FMEQGKVLTSYATIDFSGNKLEGQIPESIGLLK 626

Query:   604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 663
              +  LNLS+N   G IP + +N+  +ESLDLS N+L+G IP+ L  L  L   SVA+N L
Sbjct:   627 ALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQL 686

Query:   664 SGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNLIDMDSFF 722
              GEIP+ T Q    ++SS+EGN  LCGLPL   C +P T        + D+ +++  +  
Sbjct:   687 IGEIPQGT-QITGQSKSSFEGNAGLCGLPLQGSCFAPPTPQPKE--EDEDEEVLNWKAVV 743

Query:   723 ITFTTSYVI-VIFAIVI 738
             I +    ++ +I A VI
Sbjct:   744 IGYWPGLLLGLIMAHVI 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	776
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  192 bits (490), Expect = 4e-51
 Identities = 191/657 (29%), Positives = 278/657 (42%), Gaps = 124/657 (18%)

Query: 84  LKYLS---------LSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLT 134
           LKYLS         L       NSSR+             + +   ++ G +   +  L 
Sbjct: 45  LKYLSNWNSSADVCLWQGITCNNSSRV-----------VSIDLSGKNISGKISSAIFRLP 93

Query: 135 SLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN 194
            ++ +++S+NQL+G I        +S+  L LSNN+F   I    + N   L+T    NN
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNN 150

Query: 195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPT 254
            L+ EI                      + G            L+ ++L    + G+ P 
Sbjct: 151 MLSGEIPN--------------------DIGSFS--------SLKVLDLGGNVLVGKIPN 182

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
            L  N T L  L+L ++ L G     +   K L  + +  NN  G IP EIG  L SL  
Sbjct: 183 SL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNH 240

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG 374
            +   N L G IPSSLGN+K LQ L L  N L+G IP  +      L SL LS+N     
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDN----- 294

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
                 SLSG+IP  +  L  L+ + + +N+  G IPV    L  LQ+L +  N  SG +
Sbjct: 295 ------SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 435 PSCFHPLSIKQVHLSKNMLHGQLK-RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493
           P           +L K   H  L   DLS N L G IP+ +     L  LIL  N+LEGE
Sbjct: 349 PK----------NLGK---HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553
           +   L     L+ + L +N+  G +P  F    L      S++            + QG 
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN------------NLQGR 443

Query: 554 VEKQIHEIFEFTTKNI-VYIYQGKVLSL-----LSGLDLSCNKLIGPIPPQIGNLTRIQT 607
           +  +  ++      ++    + G +        L  LDLS N+  G +P ++G+L+ +  
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQ 503

Query: 608 LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 667
           L LS N L G IP   S+ K + SLDLS+N+L+G+IP    E+  L    ++ N LSGEI
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 668 PE-----------------------WTAQFATFNESSYEGNTFLCG----LPLPICR 697
           P+                        T  F   N S+  GN  LCG      LP C+
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  182 bits (463), Expect = 1e-47
 Identities = 188/609 (30%), Positives = 276/609 (45%), Gaps = 125/609 (20%)

Query: 29  FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE-SMPSLKYL 87
            P ++ +++S  +++G +    F    SL +L +       N NF   I   S+P+L+ L
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS------NNNFTGSIPRGSIPNLETL 145

Query: 88  SLSYSTLGTNSSRI-LDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQL 146
            LS + L   S  I  D G  S   L+ L +G N L G +P  +TNLTSL  L ++SNQL
Sbjct: 146 DLSNNML---SGEIPNDIGSFS--SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 147 TGSISSSPLIHLTSIEKLYLSNNHF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSH 204
            G I    L  + S++ +YL  N+   +IP  +  L + + L   Y   N L   I  S 
Sbjct: 201 VGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY---NNLTGPIPSS- 255

Query: 205 SLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR 264
                   L  L                    +L+ + L   K++G  P  +  +  KL 
Sbjct: 256 --------LGNLK-------------------NLQYLFLYQNKLSGPIPPSIF-SLQKLI 287

Query: 265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324
            L L ++SL G     +   + L +L + +NNF G IP+ +   LP L +     N   G
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSG 346

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
            IP +LG    L +LDLS N+LTGEIPE L            S+ NL + L L +NSL G
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-----------SSGNLFK-LILFSNSLEG 394

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SI 443
           +IP+ LG    L+ + + +N   G +P EF +L L+  LDIS+NN+ G + S    + S+
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 444 KQVHLSKNMLHGQL----------KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493
           + + L++N   G L            DLS N+ +G++P  +  LS+L  L L  N L GE
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553
           +  +L    +L  LDLS+N L G IP  F                         E P   
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFS------------------------EMP--- 547

Query: 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN 613
                                  VLS L   DLS N+L G IP  +GN+  +  +N+SHN
Sbjct: 548 -----------------------VLSQL---DLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 614 DLIGLIPST 622
            L G +PST
Sbjct: 582 HLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 2e-24
 Identities = 141/484 (29%), Positives = 220/484 (45%), Gaps = 78/484 (16%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
           F++L+ L L G+ L   +  S+ ++  SL+ L+++  ++ G       P       LG M
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVG-----QIPR-----ELGQM 211

Query: 64  STR--IALNTNFLQVISESMP-------SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQE 114
            +   I L  N L   S  +P       SL +L L Y+ L    +  +   L +  +LQ 
Sbjct: 212 KSLKWIYLGYNNL---SGEIPYEIGGLTSLNHLDLVYNNL----TGPIPSSLGNLKNLQY 264

Query: 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF--Q 172
           L++  N L G +P  + +L  L  LD+S N L+G I    +I L ++E L+L +N+F  +
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGK 323

Query: 173 IPISLEPLFNHSRLKTFYADNNELNAEITQ--------------SHSLTA-------PNF 211
           IP++L  L    RL+     +N+ + EI +              +++LT         + 
Sbjct: 324 IPVALTSL---PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Query: 212 QLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQ---LSL 268
            L +L L S   +G   PK L     L  V L     +GE P+      TKL     L +
Sbjct: 381 NLFKLILFSNSLEG-EIPKSLGACRSLRRVRLQDNSFSGELPSEF----TKLPLVYFLDI 435

Query: 269 VNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIG-DVLPSLYLFNNSMNALDGSIP 327
            N++L G           L ML ++ N F G +P   G   L +L L   S N   G++P
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL---SRNQFSGAVP 492

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387
             LG++  L  L LS N L+GEIP+ L+  C  L SL LS+N L           SG+IP
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSHNQL-----------SGQIP 540

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH 447
                +  L  + +  N L G IP     ++ L  ++IS N++ GSLPS    L+I    
Sbjct: 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600

Query: 448 LSKN 451
           ++ N
Sbjct: 601 VAGN 604

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.7 bits (212), Expect = 4e-17
 Identities = 116/405 (28%), Positives = 183/405 (45%), Gaps = 34/405 (8%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L N  NL+YL L+ + L   +  SI S+   L +L +S   ++G +  +     ++LE L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLSGEI-PELVIQLQNLEIL 313

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            + S      T  + V   S+P L+ L L  +      S  + + L    +L  L + +N
Sbjct: 314 HLFSNNF---TGKIPVALTSLPRLQVLQLWSNKF----SGEIPKNLGKHNNLTVLDLSTN 366

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
           +L G +P  + +  +L  L + SN L G I  S L    S+ ++ L +N F   +  E  
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSE-- 423

Query: 181 FNHSRLKTFY-ADNNELNAEITQSHSLTAPNFQ---LSRLSLSSGYEDGVTFPKFLYHQH 236
           F    L  F    NN L   I  S     P+ Q   L+R     G  D        +   
Sbjct: 424 FTKLPLVYFLDISNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGGLPD-------SFGSK 475

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
            LE ++LS  + +G  P  L  + ++L QL L  + L G     + S K+L  LD+S+N 
Sbjct: 476 RLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
             G IP    + +P L   + S N L G IP +LGN++ L  +++S+NHL G +P   A 
Sbjct: 535 LSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Query: 357 GCVNLQSLALSNNNLQEGLYLNNNSLSGKIP--RWLGNLTWLQYI 399
             +N  ++A  N +L  G     ++ SG  P  R     +W  YI
Sbjct: 594 LAINASAVA-GNIDLCGG-----DTTSGLPPCKRVRKTPSWWFYI 632

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.4 bits (201), Expect = 6e-16
 Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 33/178 (18%)

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
            + GL L    L G IP  I  L  +Q++NLS N + G IP +  ++  +E LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA----QFATFNESSYEGNTFLCGLP-LP 694
           NG IP  L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 695 ICRSPATMSEASIGNERDDNLIDMDSFFITFTTS---YVIVIFAIVIILYVNSYWRRR 749
            C  P     A IG              I F  S     +VI A+        +W+RR
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAFLFLVICAMC-------WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 6e-12
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           L + N   RG IP +I   L  L   N S N++ G+IP SLG++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391
           IPE L      L SL +        L LN NSLSG++P  LG
Sbjct: 482 IPESLG----QLTSLRI--------LNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 266 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGS 325
           L L N  L G     I   + L  +++S N+ RG+IP  +G +  SL + + S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 326 IPSSLGNMKFLQILDLSNNHLTGEIPEHL 354
           IP SLG +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 8e-10
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 515 HGPIPPCFDNTTLYESYSNSSSLD-EQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
            GP    +    L+  + N S L  E+ E+  S +S   ++   +  +  + +   V ++
Sbjct: 4   KGPQHCPYLIFMLFFLFLNFSMLHAEELELLLSFKS---SINDPLKYLSNWNSSADVCLW 60

Query: 574 QGKV---LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP----STFSNL 626
           QG      S +  +DLS   + G I   I  L  IQT+NLS+N L G IP    +T S+L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 686
           ++   L+LSNN   G IP   +    LE   ++ N LSGEIP     F++       GN 
Sbjct: 121 RY---LNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175

Query: 687 FLCGLPLPI 695
            +  +P  +
Sbjct: 176 LVGKIPNSL 184

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 12/102 (11%)

Query: 335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394
           F+  L L N  L G IP  ++    +LQS+ LS N           S+ G IP  LG++T
Sbjct: 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGN-----------SIRGNIPPSLGSIT 466

Query: 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436
            L+ + +  N   G IP    QL  L+IL+++ N++SG +P+
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 12/92 (13%)

Query: 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLS 462
           N  L G IP +  +L  LQ +++S N+I G++P     ++  +V             DLS
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV------------LDLS 474

Query: 463 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 494
           YN  NGSIP+ +  L+ L  L L  N+L G V
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 584 LDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
           LDLS N+L   IP      L  ++ L+LS N+L  + P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           HLQ + +  N +RG++P  + ++TSL +LD+S N   GSI  S L  LTS+  L L+ N 
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNS 501

Query: 171 F--QIPISL 177
              ++P +L
Sbjct: 502 LSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 663
            +++L+LS+N L  +    F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 60/165 (36%)

Query: 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSN 533
           +DGL       L +  L G +   + +L  LQ ++LS N++ G IPP   + T  E    
Sbjct: 420 IDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV--- 470

Query: 534 SSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG 593
                                                             LDLS N   G
Sbjct: 471 --------------------------------------------------LDLSYNSFNG 480

Query: 594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTF-SNLKHVESLDLSNN 637
            IP  +G LT ++ LNL+ N L G +P+     L H  S + ++N
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 29/206 (14%)

Query: 324 GSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLS 383
            S+   L     LQ LDLS+N L  +       GC  L+SL L +++LQE L LNNN L 
Sbjct: 71  QSLLQGLTKGCGLQELDLSDNALGPD-------GCGVLESL-LRSSSLQE-LKLNNNGLG 121

Query: 384 GKIPRWLG-----NLTWLQYIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISGS- 433
            +  R L          L+ +++  N LEG     +         L+ L++++N I  + 
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181

Query: 434 LPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493
           + +    L     +L    L+     D   + L  ++         L  L LG NNL   
Sbjct: 182 IRALAEGLKANC-NLEVLDLNNNGLTDEGASALAETLASL----KSLEVLNLGDNNLTDA 236

Query: 494 VLVQLCE-----LNQLQLLDLSNNNL 514
               L          L  L LS N++
Sbjct: 237 GAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 262 KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNA 321
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L SL + N + N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 322 LDGSIPSSLG 331
           L G +P++LG
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
           +LS N + G+IP  +  ++ L  L L +N+  G +   L +L  L++L+L+ N+L G +P
Sbjct: 448 NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
           SL L NN +  +      +   +  L++LDLS N+LT  I      G  +L+SL LS NN
Sbjct: 4   SLDLSNNRLTVIP---DGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 371 L 371
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 111 HLQELYIGSNDLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           +L+ L + +N L   +P      L +L++LD+S N LT SIS      L S+  L LS N
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Query: 170 HF 171
           + 
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 23/55 (41%), Positives = 24/55 (43%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
           DLS NRL         GL  L  L L  NNL          L  L+ LDLS NNL
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 29/271 (10%)

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
             L              S+   F         +  L ++ ++    +       L SL L
Sbjct: 15  NTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDL 74

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG 374
            + S  +       +L N+  L  LDL+ N L   I E             L        
Sbjct: 75  LSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNISE-------------LLELTNLTS 120

Query: 375 LYLNNNSLSGKIPRWLGNLTW-LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGS 433
           L L+NN+++  IP  +G L   L+ + + +N +E  +P     L  L+ LD+S N++S  
Sbjct: 121 LDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL 178

Query: 434 LPSCFHPLSIKQVHLSKN---MLHGQLKR-------DLSYNRLNGSIPDWVDGLSQLSHL 483
                +  ++  + LS N    L  +++        DLS N +   +   +  L  LS L
Sbjct: 179 PKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL 237

Query: 484 ILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
            L +N LE      +  L+ L+ LDLSNN +
Sbjct: 238 ELSNNKLEDLPES-IGNLSNLETLDLSNNQI 267

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	776
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
PLN03150	623	hypothetical protein; Provisional	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.38
PRK15386	426	type III secretion protein GogB; Provisional	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.11
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.64
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.64
KOG4308	478	consensus LRR-containing protein [Function unknown	92.57
KOG4308	478	consensus LRR-containing protein [Function unknown	92.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.89
smart00370	26	LRR Leucine-rich repeats, outliers.	91.89
smart00370	26	LRR Leucine-rich repeats, outliers.	91.25
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.71
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	86.52
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.71
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.59

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-60  Score=566.79  Aligned_cols=542  Identities=32%  Similarity=0.459  Sum_probs=427.3

Q ss_pred             CCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCC
Q 041867           30 PSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSP  109 (776)
Q Consensus        30 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l  109 (776)
                      .+++.|+|++|.+.+.++. .|..+++|++|++++|  .+.+.++..++..+++|++|++++|.+.+   .++.   +.+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n--~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~---~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNN--QLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR---GSI  139 (968)
T ss_pred             CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCC--ccCCcCChHHhccCCCCCEEECcCCcccc---ccCc---ccc
Confidence            4677888888887766655 6778888888888888  55566676666578888888888888766   4443   456


Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEE
Q 041867          110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF  189 (776)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  189 (776)
                      ++|++|+|++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+.++ ..+..+++|++|
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEE
Confidence            7788888888888777788888888888888888887766666 77888888888888888775554 456777788888


Q ss_pred             EcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEcc
Q 041867          190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLV  269 (776)
Q Consensus       190 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~  269 (776)
                      ++++|.+.                            +.+|..+..+++|+.|++++|.+.+.+|..+ +++++|+.|+++
T Consensus       218 ~L~~n~l~----------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~  268 (968)
T PLN00113        218 YLGYNNLS----------------------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLY  268 (968)
T ss_pred             ECcCCccC----------------------------CcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECc
Confidence            77776543                            2345566677777777777777777777665 677777777777


Q ss_pred             CCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCc
Q 041867          270 NDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE  349 (776)
Q Consensus       270 ~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  349 (776)
                      +|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence            77777767777777777777777777777666666554 67777788877777777777777778888888888877766


Q ss_pred             CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccc
Q 041867          350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  429 (776)
Q Consensus       350 ~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~  429 (776)
                      +|..+. .+++|+.|++++|+           +.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus       348 ~p~~l~-~~~~L~~L~Ls~n~-----------l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        348 IPKNLG-KHNNLTVLDLSTNN-----------LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             CChHHh-CCCCCcEEECCCCe-----------eEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            666544 57777777744443           445667777777778888888888877777777788888888888888


Q ss_pred             cCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEe
Q 041867          430 ISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLD  508 (776)
Q Consensus       430 l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  508 (776)
                      +.+..+..+. ++.|+.+++++|.+             ++.++..+..+++|+.|++++|++.+..|..+ ..++|+.|+
T Consensus       416 l~~~~p~~~~~l~~L~~L~Ls~N~l-------------~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        416 FSGELPSEFTKLPLVYFLDISNNNL-------------QGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD  481 (968)
T ss_pred             eeeECChhHhcCCCCCEEECcCCcc-------------cCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence            7776666555 67777775555544             34566667788999999999999988777655 468999999


Q ss_pred             CCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccC
Q 041867          509 LSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSC  588 (776)
Q Consensus       509 Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  588 (776)
                      +++|++.+..|..+..++                                                     +|+.|+|++
T Consensus       482 ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~  508 (968)
T PLN00113        482 LSRNQFSGAVPRKLGSLS-----------------------------------------------------ELMQLKLSE  508 (968)
T ss_pred             CcCCccCCccChhhhhhh-----------------------------------------------------ccCEEECcC
Confidence            999999988888776544                                                     899999999


Q ss_pred             CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          589 NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       589 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      |.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|
T Consensus       509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCcccccCCCCCCCCC
Q 041867          669 EWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       669 ~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      .. .++.++....+.|||..|+.+
T Consensus       589 ~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        589 ST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             Cc-chhcccChhhhcCCccccCCc
Confidence            84 678888899999999999753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.5e-56  Score=530.90  Aligned_cols=521  Identities=30%  Similarity=0.459  Sum_probs=467.8

Q ss_pred             CCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCC
Q 041867           54 FKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNL  133 (776)
Q Consensus        54 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  133 (776)
                      ..+++.|+++++  .+.+..+..+. .+++|++|+|++|.+.+   .+|...+..+++|++|+|++|++++..|.  +.+
T Consensus        68 ~~~v~~L~L~~~--~i~~~~~~~~~-~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l  139 (968)
T PLN00113         68 SSRVVSIDLSGK--NISGKISSAIF-RLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI  139 (968)
T ss_pred             CCcEEEEEecCC--CccccCChHHh-CCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence            457999999999  66677777777 99999999999999987   67765566999999999999999987775  568


Q ss_pred             CCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCccc
Q 041867          134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQL  213 (776)
Q Consensus       134 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  213 (776)
                      ++|++|++++|.+++.+|. .++.+++|++|++++|.+.+.++ ..+.++++|++|++++|.+.                
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~----------------  201 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLV----------------  201 (968)
T ss_pred             CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCc----------------
Confidence            9999999999999877887 79999999999999999886655 45788999999998877653                


Q ss_pred             ceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEce
Q 041867          214 SRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDIS  293 (776)
Q Consensus       214 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls  293 (776)
                                  +.+|..+..+++|+.|++++|.+.+.+|..+ .++++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus       202 ------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        202 ------------GQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             ------------CcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence                        3467778889999999999999999999887 899999999999999999999999999999999999


Q ss_pred             eccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccc
Q 041867          294 NNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE  373 (776)
Q Consensus       294 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~  373 (776)
                      +|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|    
T Consensus       269 ~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n----  342 (968)
T PLN00113        269 QNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN----  342 (968)
T ss_pred             CCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCC----
Confidence            99999888888776 78999999999999999999999999999999999999977776654 6999999995554    


Q ss_pred             eEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcc
Q 041867          374 GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNM  452 (776)
Q Consensus       374 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~  452 (776)
                             .+.+..|..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|++.+..+..+. +++|+.|++++|+
T Consensus       343 -------~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        343 -------KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             -------CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence                   55567888999999999999999999999999999999999999999999988887766 8899999776665


Q ss_pred             cCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCccccccc
Q 041867          453 LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYS  532 (776)
Q Consensus       453 l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~  532 (776)
                      +             ++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|..+.         
T Consensus       416 l-------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---------  473 (968)
T PLN00113        416 F-------------SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG---------  473 (968)
T ss_pred             e-------------eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------
Confidence            4             456778899999999999999999999998899999999999999999887776442         


Q ss_pred             CCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccc
Q 041867          533 NSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSH  612 (776)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  612 (776)
                                                                   .++|+.|++++|++++..|..+.++++|+.|+|++
T Consensus       474 ---------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  508 (968)
T PLN00113        474 ---------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE  508 (968)
T ss_pred             ---------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence                                                         23799999999999999999999999999999999


Q ss_pred             ccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          613 NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       613 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      |.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..++.+++++|++.+..|
T Consensus       509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             C
Q 041867          693 L  693 (776)
Q Consensus       693 ~  693 (776)
                      .
T Consensus       589 ~  589 (968)
T PLN00113        589 S  589 (968)
T ss_pred             C
Confidence            4

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-42  Score=343.36  Aligned_cols=394  Identities=23%  Similarity=0.268  Sum_probs=326.5

Q ss_pred             CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867          237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN  316 (776)
Q Consensus       237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~  316 (776)
                      .-+.|++++|++...-+.. |.++++|+++++..|.++.+ |.......+++.|+|.+|.|+ .+.......++.|+.+|
T Consensus        79 ~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHH-HhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            3467888888887554444 47888888888888888763 333344456888899888887 44444344478889999


Q ss_pred             cccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCC
Q 041867          317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL  396 (776)
Q Consensus       317 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L  396 (776)
                      ++.|.|+......|..-.++++|+|++|.|+ .+..+.|.++.+|..|.|+.|+           ++...+..|.++++|
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNr-----------ittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNR-----------ITTLPQRSFKRLPKL  223 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCc-----------ccccCHHHhhhcchh
Confidence            9999888666667777788899999999988 8888888888888888855544           445667788889999


Q ss_pred             CEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhc
Q 041867          397 QYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVD  475 (776)
Q Consensus       397 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~  475 (776)
                      +.|+|..|+|....--.|.++++|+.|.+..|.+.....+.|. +.++++|+++.|             +++..-.+|+.
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-------------~l~~vn~g~lf  290 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-------------RLQAVNEGWLF  290 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-------------hhhhhhccccc
Confidence            9999999988855466788999999999999999888888776 888888855554             44456778899


Q ss_pred             cCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867          476 GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE  555 (776)
Q Consensus       476 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (776)
                      +++.|+.|++++|.|..+.+++...+++|+.|+|+.|+|+...+..|..+.                             
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------  341 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-----------------------------  341 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-----------------------------
Confidence            999999999999999999999999999999999999999988888776644                             


Q ss_pred             ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCcc---ccCCCCCCCEE
Q 041867          556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPS---TFSNLKHVESL  632 (776)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L  632 (776)
                                              .|++|+|++|.+..+...+|..+++|++|||++|.+...+.+   .|.+|++|+.|
T Consensus       342 ------------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  342 ------------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ------------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence                                    899999999999988889999999999999999999887654   48899999999


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC-----------------C
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------I  695 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~-----------------~  695 (776)
                      ++.+|+|..+...+|..++.|+.|||.+|.|....|.+|.++ .|+.+.+.--.++|+|++.                 .
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~  476 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAK  476 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeee
Confidence            999999998888899999999999999999999999998888 8999999889999999874                 5


Q ss_pred             CCCCCCCCCCCCCCCCC
Q 041867          696 CRSPATMSEASIGNERD  712 (776)
Q Consensus       696 c~~~~~~~~~~~~~~~~  712 (776)
                      |+.|+...+.++.+.+.
T Consensus       477 CayPe~Lad~~i~svd~  493 (873)
T KOG4194|consen  477 CAYPEPLADQSIVSVDT  493 (873)
T ss_pred             ccCCcccccceeEeech
Confidence            99999888876554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-40  Score=332.55  Aligned_cols=392  Identities=23%  Similarity=0.246  Sum_probs=287.6

Q ss_pred             ccEEEccCCCCCCCCCCcCCcCCCC-C-CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCC-CC
Q 041867           84 LKYLSLSYSTLGTNSSRILDRGLCS-P-VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHL-TS  160 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~~~l~~-l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~  160 (776)
                      -+.||.+++.+..    +....+.. + ..-+.|++++|++..+.+..|.++++|+++++.+|.++ .||.  |++. .+
T Consensus        54 ~~lldcs~~~lea----~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sgh  126 (873)
T KOG4194|consen   54 TRLLDCSDRELEA----IDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGH  126 (873)
T ss_pred             ceeeecCcccccc----ccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccc
Confidence            4556777776643    11112222 1 24567999999999988999999999999999999998 8997  5554 45


Q ss_pred             CCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867          161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET  240 (776)
Q Consensus       161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  240 (776)
                      |+.|+|.+|.|+ ++..+.+..++.|+.|||+.|.|+..                                         
T Consensus       127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i-----------------------------------------  164 (873)
T KOG4194|consen  127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEI-----------------------------------------  164 (873)
T ss_pred             eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcc-----------------------------------------
Confidence            999999999887 55656677777777777777665422                                         


Q ss_pred             EEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867          241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN  320 (776)
Q Consensus       241 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n  320 (776)
                                  |..-|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .+|...+..+++|+.|++..|
T Consensus       165 ------------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  165 ------------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             ------------cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence                        1111233456777777777777777778888888888888888888 677766666888888888888


Q ss_pred             cCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEe
Q 041867          321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYII  400 (776)
Q Consensus       321 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~  400 (776)
                      .|.-.....|.++++|+.|.+..|.+. .+..++|.++.++++|+|+.|+++           .....++-++++|+.|+
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~-----------~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQ-----------AVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhh-----------hhhcccccccchhhhhc
Confidence            877444567888888888888888887 788888878888888885555543           45566677788888888


Q ss_pred             ccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccC
Q 041867          401 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQL  480 (776)
Q Consensus       401 l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L  480 (776)
                      +++|.|..+.++.+...++|++|||++|+|+.                                    ..+..|..+..|
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~------------------------------------l~~~sf~~L~~L  343 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITR------------------------------------LDEGSFRVLSQL  343 (873)
T ss_pred             cchhhhheeecchhhhcccceeEecccccccc------------------------------------CChhHHHHHHHh
Confidence            88888887777777778888888888777763                                    445667888889


Q ss_pred             CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867          481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE  560 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (776)
                      ++|+|++|.+...-..+|..+.+|++|||++|.++..+.++-...                                   
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f-----------------------------------  388 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF-----------------------------------  388 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh-----------------------------------
Confidence            999999999988888889999999999999998875443311110                                   


Q ss_pred             eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                     ..+++|+.|+|.+|++..+...+|.++++|++|||.+|.|..+.|.+|..+ .|++|.+..
T Consensus       389 ---------------~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  389 ---------------NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ---------------ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence                           014467777777777776666777777777777777777777777777776 677666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.6e-40  Score=317.43  Aligned_cols=450  Identities=26%  Similarity=0.399  Sum_probs=248.8

Q ss_pred             CccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867           83 SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE  162 (776)
Q Consensus        83 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  162 (776)
                      .|..|.+++|.+..    +. ..+.++..|.+|++++|+++ ..|.+++.+..++.++.++|++. .+|+ .+..+.+|+
T Consensus        46 ~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLV  117 (565)
T ss_pred             chhhhhhccCchhh----cc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhh
Confidence            35556666665543    22 25556666666666666665 45556666666666666666665 5555 556666666


Q ss_pred             EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867          163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE  242 (776)
Q Consensus       163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  242 (776)
                      .++++.|.+. ..+ ..++.+..+..++..+|.+.                             ..|..+..+.++..++
T Consensus       118 ~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~-----------------------------slp~~~~~~~~l~~l~  166 (565)
T KOG0472|consen  118 KLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQIS-----------------------------SLPEDMVNLSKLSKLD  166 (565)
T ss_pred             hhhcccccee-ecC-chHHHHhhhhhhhccccccc-----------------------------cCchHHHHHHHHHHhh
Confidence            6666666554 112 22344444444444433332                             2455555566666666


Q ss_pred             cCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccC
Q 041867          243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNAL  322 (776)
Q Consensus       243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  322 (776)
                      +.+|++....|..+  +++.|++++...|.++. .|..++.+.+|..|++..|++. .+| .+.. +..|.++.+..|.|
T Consensus       167 ~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~g-cs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  167 LEGNKLKALPENHI--AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPG-CSLLKELHVGENQI  240 (565)
T ss_pred             ccccchhhCCHHHH--HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCc-cHHHHHHHhcccHH
Confidence            76766663333322  35666666665555544 3445555666666666666655 444 2222 45556666666655


Q ss_pred             ccCCCccC-CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEec
Q 041867          323 DGSIPSSL-GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIM  401 (776)
Q Consensus       323 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l  401 (776)
                      . .+|... .+++++.+||+..|+++ ++|.++.. +.+|++||+|+|.++            ..|..++++ .|+.|-+
T Consensus       241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is------------~Lp~sLgnl-hL~~L~l  304 (565)
T KOG0472|consen  241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS------------SLPYSLGNL-HLKFLAL  304 (565)
T ss_pred             H-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc------------cCCcccccc-eeeehhh
Confidence            5 333333 25566666666666665 55655552 555556654444433            345555555 5666666


Q ss_pred             cCCccccCCCccc-----------------------------------------CCCCCCcEEEccccccCCCCCCCCCC
Q 041867          402 PNNHLEGPIPVEF-----------------------------------------CQLDLLQILDISDNNISGSLPSCFHP  440 (776)
Q Consensus       402 ~~n~i~~~~~~~~-----------------------------------------~~l~~L~~L~ls~n~l~~~~~~~~~~  440 (776)
                      .+|.+..+-.+.+                                         ..+.+.+.|++++-+++.++...|..
T Consensus       305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea  384 (565)
T KOG0472|consen  305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA  384 (565)
T ss_pred             cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence            6655432100000                                         01112223333333333222222221


Q ss_pred             Cc---ccEEEcCCcccCcccccccCCccccccCChhhccCccCCEE-EcccccCCccchhhhcCCCCCCEEeCCCCcccC
Q 041867          441 LS---IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHL-ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG  516 (776)
Q Consensus       441 ~~---L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  516 (776)
                      ..   ....             +++.|++. .+|..+..+..+.+. .+++|.+ +..|..++.+++|..|++++|.+. 
T Consensus       385 ~~~~~Vt~V-------------nfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-  448 (565)
T KOG0472|consen  385 AKSEIVTSV-------------NFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-  448 (565)
T ss_pred             hhhcceEEE-------------ecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-
Confidence            11   2222             33444443 445544444444433 3333333 356667777777777777777665 


Q ss_pred             CCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh
Q 041867          517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP  596 (776)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  596 (776)
                      .+|..+..+.                                                     .|+.||++.|.+. .+|
T Consensus       449 ~LP~e~~~lv-----------------------------------------------------~Lq~LnlS~NrFr-~lP  474 (565)
T KOG0472|consen  449 DLPEEMGSLV-----------------------------------------------------RLQTLNLSFNRFR-MLP  474 (565)
T ss_pred             hcchhhhhhh-----------------------------------------------------hhheecccccccc-cch
Confidence            4444444332                                                     5777888888776 677


Q ss_pred             hhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867          597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       597 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  664 (776)
                      ..+..+..++.+-.++|++..+.|+.+.+|.+|.+|||.+|.+. .+|..+++|++|+.|++.||+|+
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            77777777777777777777777777777788888888888876 66667778888888888888877

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.3e-39  Score=310.08  Aligned_cols=492  Identities=24%  Similarity=0.326  Sum_probs=370.9

Q ss_pred             CCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCC
Q 041867          105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS  184 (776)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  184 (776)
                      ..+.-..|+.+++++|.++. +.+.+.++..|.+|++.+|++. ..|+ +++.+..++.++.++|.+. .+| .....+.
T Consensus        40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~  114 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELP-EQIGSLI  114 (565)
T ss_pred             hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hcc-HHHhhhh
Confidence            45666789999999999985 4556889999999999999998 8888 8999999999999999987 444 4577788


Q ss_pred             CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCc
Q 041867          185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR  264 (776)
Q Consensus       185 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  264 (776)
                      +++.++.+.|.+.                             .+|+.++.+..++.++..+|++. ..|..+ ..+.++.
T Consensus       115 ~l~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~  163 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLS  163 (565)
T ss_pred             hhhhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHH
Confidence            8888888887653                             35677888889999999999988 566665 5888899


Q ss_pred             EEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCC
Q 041867          265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN  344 (776)
Q Consensus       265 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  344 (776)
                      .+.+.+|.+....+..+. ++.|+++|...|.++ .+|..++. +.+|..|++..|++. .+| .|.++..|+++..+.|
T Consensus       164 ~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  164 KLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhccc
Confidence            999999999987776666 999999999999887 88888887 889999999999998 566 7999999999999999


Q ss_pred             cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEE
Q 041867          345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILD  424 (776)
Q Consensus       345 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  424 (776)
                      +++ .+|++....++++..||+..|+++            ..|+.+.-+.+|++||+++|.|+ ..|..++++ .|+.|-
T Consensus       239 ~i~-~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  239 QIE-MLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA  303 (565)
T ss_pred             HHH-hhHHHHhcccccceeeeccccccc------------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence            998 999999988999999997777776            58888888999999999999999 567788999 899999


Q ss_pred             ccccccCCCCCCCCCCC---cccEEE--cCCcccCccccc-ccCCccccccCChhhccCccCCEEEcccccCCccchhhh
Q 041867          425 ISDNNISGSLPSCFHPL---SIKQVH--LSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL  498 (776)
Q Consensus       425 ls~n~l~~~~~~~~~~~---~L~~L~--l~~n~l~~~~~~-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  498 (776)
                      +.+|++..+-.....+.   -|++|.  +....+...... .-......+..| ......+.+.|++++-+++......|
T Consensus       304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVf  382 (565)
T KOG0472|consen  304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVF  382 (565)
T ss_pred             hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHH
Confidence            99998863322222211   122221  000000000000 000000111111 12335567788888888886555555


Q ss_pred             cCCC--CCCEEeCCCCcccCCCCCCCcCCccccc--ccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEec
Q 041867          499 CELN--QLQLLDLSNNNLHGPIPPCFDNTTLYES--YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ  574 (776)
Q Consensus       499 ~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (776)
                      ..-.  -...++++.|++. ..|..+..+.....  ....+.+. +.                        ..      .
T Consensus       383 ea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv------------------------~~------~  430 (565)
T KOG0472|consen  383 EAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FV------------------------PL------E  430 (565)
T ss_pred             HHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cc------------------------hH------H
Confidence            4322  3678888888886 44444433221100  00000000 00                        00      0


Q ss_pred             cccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCC
Q 041867          575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE  654 (776)
Q Consensus       575 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  654 (776)
                      ...+++|..|+|++|.+. .+|..++.+..|+.||+|.|++. ..|.....+..++.+-.++|++..+.|+.+..|.+|+
T Consensus       431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence            022458999999999998 78899999999999999999998 6688888888999999999999988888899999999


Q ss_pred             EEecccccCcccCCCccccccccCcccccCCCCC
Q 041867          655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL  688 (776)
Q Consensus       655 ~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  688 (776)
                      +||+.+|.+. .+|..++.+++++++.+.|||+.
T Consensus       509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999 56666899999999999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.7e-35  Score=310.20  Aligned_cols=501  Identities=25%  Similarity=0.288  Sum_probs=326.5

Q ss_pred             EECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEc
Q 041867           10 LTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSL   89 (776)
Q Consensus        10 L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L   89 (776)
                      +|.+.+++. .+|.. +-.-..++.|+++.|.+. ..|-.+..+.-+|+.|++++|.+   +.+|..+. .+.+|+.|++
T Consensus         3 vd~s~~~l~-~ip~~-i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it-~l~~L~~ln~   75 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQ-ILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQI---SSFPIQIT-LLSHLRQLNL   75 (1081)
T ss_pred             cccccccCc-ccchh-hccHHHHHhhhccccccc-cCchHHhhheeeeEEeecccccc---ccCCchhh-hHHHHhhccc
Confidence            556666654 34544 333345888899888765 33333556666799999998843   45666666 7788999999


Q ss_pred             cCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCC
Q 041867           90 SYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN  169 (776)
Q Consensus        90 ~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n  169 (776)
                      +.|.|..    .| .+..++.+|+++.|.+|+++ ..|.++..+.+|+.||++.|.+. .+|. .+..++.++.+..++|
T Consensus        76 s~n~i~~----vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen   76 SRNYIRS----VP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNN  147 (1081)
T ss_pred             chhhHhh----Cc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcc
Confidence            9998875    44 47888899999999999888 68889999999999999999987 8887 7888888888888888


Q ss_pred             ccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCc
Q 041867          170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN  249 (776)
Q Consensus       170 ~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  249 (776)
                      .....     ++... ++.+++..|.+                            .+.++..+..++.  .+++++|.+.
T Consensus       148 ~~~~~-----lg~~~-ik~~~l~~n~l----------------------------~~~~~~~i~~l~~--~ldLr~N~~~  191 (1081)
T KOG0618|consen  148 EKIQR-----LGQTS-IKKLDLRLNVL----------------------------GGSFLIDIYNLTH--QLDLRYNEME  191 (1081)
T ss_pred             hhhhh-----hcccc-chhhhhhhhhc----------------------------ccchhcchhhhhe--eeecccchhh
Confidence            22211     11111 44454444432                            2223333333333  4666666654


Q ss_pred             ccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCcc
Q 041867          250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSS  329 (776)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  329 (776)
                       ...   ...++.|+.+....|++.....    .                         .++++.++.+.|.++...+  
T Consensus       192 -~~d---ls~~~~l~~l~c~rn~ls~l~~----~-------------------------g~~l~~L~a~~n~l~~~~~--  236 (1081)
T KOG0618|consen  192 -VLD---LSNLANLEVLHCERNQLSELEI----S-------------------------GPSLTALYADHNPLTTLDV--  236 (1081)
T ss_pred             -hhh---hhhccchhhhhhhhcccceEEe----c-------------------------CcchheeeeccCcceeecc--
Confidence             111   1344444444444443332111    1                         2355555555555542211  


Q ss_pred             CCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccC
Q 041867          330 LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP  409 (776)
Q Consensus       330 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~  409 (776)
                      .....+|+.+++++|+++ .+|..+. .+.+|+.++..+|.+.            ..|..+...++|+.|.+.+|.+. .
T Consensus       237 ~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~------------~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  237 HPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLV------------ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             ccccccceeeecchhhhh-cchHHHH-hcccceEecccchhHH------------hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence            123355666666666666 6663333 4666666665555543            45555666666667777777666 4


Q ss_pred             CCcccCCCCCCcEEEccccccCCCCCCCCC--CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc
Q 041867          410 IPVEFCQLDLLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH  487 (776)
Q Consensus       410 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~  487 (776)
                      +|......++|+.||+..|.+...++..+.  ...+..++.+.|++...             ....=...+.|+.|++.+
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-------------p~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-------------PSYEENNHAALQELYLAN  368 (1081)
T ss_pred             CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc-------------ccccchhhHHHHHHHHhc
Confidence            455556667777777777777655554444  22355665555554311             101112356789999999


Q ss_pred             ccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeec
Q 041867          488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTK  567 (776)
Q Consensus       488 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (776)
                      |.+++...+.+.+...|+.|+|++|++...+...+.++.                                         
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-----------------------------------------  407 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-----------------------------------------  407 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhchH-----------------------------------------
Confidence            999988888899999999999999999866665665543                                         


Q ss_pred             ceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCc-CCcc
Q 041867          568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGK-IPHQ  646 (776)
Q Consensus       568 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~  646 (776)
                                  .|++|+||+|+++ .+|..+..++.|++|...+|++... | .+..+++|+.+|+|.|.++.. +|..
T Consensus       408 ------------~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  408 ------------ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ------------HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhh
Confidence                        7899999999998 6789999999999999999999844 5 788899999999999999854 3433


Q ss_pred             ccCCCCCCEEecccccCcccCCCccccccccCccc
Q 041867          647 LVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS  681 (776)
Q Consensus       647 l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~  681 (776)
                      .. -++|++||++||.-....-..+..+..+...+
T Consensus       473 ~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~  506 (1081)
T KOG0618|consen  473 LP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMD  506 (1081)
T ss_pred             CC-CcccceeeccCCcccccchhhhHHhhhhhhee
Confidence            33 38999999999985433333344444443333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-33  Score=299.93  Aligned_cols=486  Identities=27%  Similarity=0.337  Sum_probs=328.1

Q ss_pred             EeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCE
Q 041867           35 LSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQE  114 (776)
Q Consensus        35 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~  114 (776)
                      +|++.+.+. .+|.. +..-..++.|++..|  .+.....+.+. ..-+|+.||+++|++..    .|. .+..+.+|+.
T Consensus         3 vd~s~~~l~-~ip~~-i~~~~~~~~ln~~~N--~~l~~pl~~~~-~~v~L~~l~lsnn~~~~----fp~-~it~l~~L~~   72 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQ-ILNNEALQILNLRRN--SLLSRPLEFVE-KRVKLKSLDLSNNQISS----FPI-QITLLSHLRQ   72 (1081)
T ss_pred             cccccccCc-ccchh-hccHHHHHhhhcccc--ccccCchHHhh-heeeeEEeecccccccc----CCc-hhhhHHHHhh
Confidence            455666654 45542 222333677777776  33333334444 44447777777777654    332 5556667777


Q ss_pred             EEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccC
Q 041867          115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN  194 (776)
Q Consensus       115 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  194 (776)
                      |+++.|.|. ..|.+..++.+|+++.|.+|.+. ..|. .+..+.+|+.|+++.|.+. .+|                  
T Consensus        73 ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~P------------------  130 (1081)
T KOG0618|consen   73 LNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIP------------------  130 (1081)
T ss_pred             cccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCc------------------
Confidence            777777666 45666666777777777777766 6666 6666777777777777655 222                  


Q ss_pred             cccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCc
Q 041867          195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG  274 (776)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  274 (776)
                                                         ..+..++.++.++.++|.....++.      ..++.+++..|.+.
T Consensus       131 -----------------------------------l~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~  169 (1081)
T KOG0618|consen  131 -----------------------------------LVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLG  169 (1081)
T ss_pred             -----------------------------------hhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcc
Confidence                                               2333333444444444411111111      11556666666666


Q ss_pred             CcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhh
Q 041867          275 GPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHL  354 (776)
Q Consensus       275 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  354 (776)
                      +.++..+..++.  .+++.+|.+. ...  . ..+++|+.+....|.+....    -.-++|+.|+.+.|.+. ++....
T Consensus       170 ~~~~~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p  238 (1081)
T KOG0618|consen  170 GSFLIDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHP  238 (1081)
T ss_pred             cchhcchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eecccc
Confidence            666655555555  6888888776 222  1 12567888888888776321    13477889999999887 333222


Q ss_pred             hhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCC
Q 041867          355 AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL  434 (776)
Q Consensus       355 ~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~  434 (776)
                        ...+|+++++++|++.            ..|+++..+.+|+.++..+|.+. ..|......++|+.|++..|.+...+
T Consensus       239 --~p~nl~~~dis~n~l~------------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip  303 (1081)
T KOG0618|consen  239 --VPLNLQYLDISHNNLS------------NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP  303 (1081)
T ss_pred             --ccccceeeecchhhhh------------cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence              2458888887777655            46788889999999999999996 67777888889999999999988766


Q ss_pred             CCCCCCCcccEEEcCCcccCcccccccCCccccccCChh-hccCcc-CCEEEcccccCCccchhhhcCCCCCCEEeCCCC
Q 041867          435 PSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW-VDGLSQ-LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN  512 (776)
Q Consensus       435 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~-~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  512 (776)
                      +..-....|++|++..|++.              ..|+. +.-... |..|+.+.|++.......=...+.|+.|.+.+|
T Consensus       304 ~~le~~~sL~tLdL~~N~L~--------------~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN  369 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLP--------------SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN  369 (1081)
T ss_pred             Ccccccceeeeeeehhcccc--------------ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence            66555778888877777665              23332 222222 666667777766433222223456888888888


Q ss_pred             cccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC
Q 041867          513 NLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI  592 (776)
Q Consensus       513 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  592 (776)
                      .+++..-..+.+                                                     .+.|+.|+|++|++.
T Consensus       370 ~Ltd~c~p~l~~-----------------------------------------------------~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  370 HLTDSCFPVLVN-----------------------------------------------------FKHLKVLHLSYNRLN  396 (1081)
T ss_pred             cccccchhhhcc-----------------------------------------------------ccceeeeeecccccc
Confidence            887655444444                                                     348999999999999


Q ss_pred             CCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccc
Q 041867          593 GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA  672 (776)
Q Consensus       593 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~  672 (776)
                      ......+.++..|++|+||+|+++.+ |.....+..|++|...+|++. ..| .+..++.|+.+|+|.|.++...-..-.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            77778899999999999999999955 688999999999999999998 777 788999999999999999853333234


Q ss_pred             cccccCcccccCCCCCC
Q 041867          673 QFATFNESSYEGNTFLC  689 (776)
Q Consensus       673 ~~~~l~~~~~~~n~~~c  689 (776)
                      .+++|+.++++||+|.-
T Consensus       474 p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             CCcccceeeccCCcccc
Confidence            55899999999999743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.4e-33  Score=281.79  Aligned_cols=355  Identities=28%  Similarity=0.358  Sum_probs=248.7

Q ss_pred             CcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCc-ccCCh
Q 041867          225 GVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR-GHIPI  303 (776)
Q Consensus       225 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~  303 (776)
                      .+.+|.....++.++.|.+...++. .+|..+ +.+.+|++|.+++|++... ...++.++.|+.+++.+|++. .-+|.
T Consensus        21 g~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~   97 (1255)
T KOG0444|consen   21 GDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPT   97 (1255)
T ss_pred             CCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCc
Confidence            3567888888888888888887776 677776 7888888888888887653 345667788888888888775 34677


Q ss_pred             hhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCC
Q 041867          304 EIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLS  383 (776)
Q Consensus       304 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~  383 (776)
                      +++. +..|+.++++.|.+. ..|..+..-+++-+|+||+|+|. ++|..+|.+++.|-.|+||+|++.           
T Consensus        98 diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-----------  163 (1255)
T KOG0444|consen   98 DIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-----------  163 (1255)
T ss_pred             hhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-----------
Confidence            7776 677888888888887 66777777788888888888887 888888877888888887766665           


Q ss_pred             CCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCC
Q 041867          384 GKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSY  463 (776)
Q Consensus       384 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  463 (776)
                       ..|..+..+..|++|++++|.+....-..+..+++|+.|.+++.+-+-                               
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------------------------------  211 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------------------------------  211 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------------
Confidence             567777778888888888887664444455566677777777655331                               


Q ss_pred             ccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhc
Q 041867          464 NRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEI  543 (776)
Q Consensus       464 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (776)
                          .-+|..+.++.+|..++++.|.+. ..|..+..+++|+.|+||+|+|+.... +...                   
T Consensus       212 ----~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~-------------------  266 (1255)
T KOG0444|consen  212 ----DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE-------------------  266 (1255)
T ss_pred             ----hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH-------------------
Confidence                134555666777777777777776 556666777777777777777653211 0000                   


Q ss_pred             ccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-Cccc
Q 041867          544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPST  622 (776)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~  622 (776)
                                                        -.+|++|+||.|+++ ..|.++..++.|+.|.+.+|+++-. +|+.
T Consensus       267 ----------------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  267 ----------------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             ----------------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence                                              125677777777776 6677777777777777777766532 5666


Q ss_pred             cCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867          623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  690 (776)
Q Consensus       623 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~  690 (776)
                      ++.+.+|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.+..+++..||.+--
T Consensus       312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccC
Confidence            777777777777777775 66777777777777777777776 5666666667777777777766553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=5e-32  Score=274.79  Aligned_cols=386  Identities=26%  Similarity=0.341  Sum_probs=238.3

Q ss_pred             CccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867           83 SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE  162 (776)
Q Consensus        83 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  162 (776)
                      -.|-.|+++|.+++   ...+.+...++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+.. .+..++.|+
T Consensus         8 FVrGvDfsgNDFsg---~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LR   81 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSG---DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLR   81 (1255)
T ss_pred             eeecccccCCcCCC---CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhH
Confidence            34444555555543   222224445555555555555554 44555555555555555555554 3322 344445555


Q ss_pred             EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867          163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE  242 (776)
Q Consensus       163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  242 (776)
                      .+++.+|++..                                                    .-+|..+..+..|+.||
T Consensus        82 sv~~R~N~LKn----------------------------------------------------sGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   82 SVIVRDNNLKN----------------------------------------------------SGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             HHhhhcccccc----------------------------------------------------CCCCchhcccccceeee
Confidence            55444444331                                                    12456666667777777


Q ss_pred             cCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccC
Q 041867          243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNAL  322 (776)
Q Consensus       243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  322 (776)
                      +++|++. +.|..+ ....+                        +-.|++|+|+|. .+|..++-.+..|-.|++++|++
T Consensus       110 LShNqL~-EvP~~L-E~AKn------------------------~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNL-EYAKN------------------------SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             cchhhhh-hcchhh-hhhcC------------------------cEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            7777765 555554 33344                        444555555554 55555554455666666666666


Q ss_pred             ccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEecc
Q 041867          323 DGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP  402 (776)
Q Consensus       323 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~  402 (776)
                      . .+|+.+..+..|++|+|++|.+. .+.-.-.-.+++|+.|.+++.+-+          ...+|.++..+.+|..+|++
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT----------l~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT----------LDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------hhcCCCchhhhhhhhhcccc
Confidence            5 55666677777777777777654 222111112455666665554322          12366777777888888888


Q ss_pred             CCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCE
Q 041867          403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSH  482 (776)
Q Consensus       403 ~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~  482 (776)
                      .|.+. ..|+.+..+++|+.|++|+|+|+....                                     ..+.-.+|++
T Consensus       231 ~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-------------------------------------~~~~W~~lEt  272 (1255)
T KOG0444|consen  231 ENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-------------------------------------TEGEWENLET  272 (1255)
T ss_pred             ccCCC-cchHHHhhhhhhheeccCcCceeeeec-------------------------------------cHHHHhhhhh
Confidence            88777 677777788888888888887763211                                     1233357888


Q ss_pred             EEcccccCCccchhhhcCCCCCCEEeCCCCccc-CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccce
Q 041867          483 LILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEI  561 (776)
Q Consensus       483 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (776)
                      |+++.|+++ ..|.+++.++.|+.|.+.+|+++ +-+|..++++.                                   
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~-----------------------------------  316 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI-----------------------------------  316 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-----------------------------------
Confidence            888888887 56778888888888888888875 22344444433                                   


Q ss_pred             eeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          562 FEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                                        +|+.+..++|.+. .+|+.++++..|+.|.|++|++. ..|+++.-++.|+.||+.+|+-..
T Consensus       317 ------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  317 ------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence                              6888888888887 88999999999999999999988 457888888999999999998764


Q ss_pred             cCCccccCCCCCCEEecc
Q 041867          642 KIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       642 ~~~~~l~~l~~L~~L~l~  659 (776)
                      ..|.--..-++|+.-+|.
T Consensus       377 MPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  377 MPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CCCCcchhhhcceeeecc
Confidence            444322222455554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=6.3e-27  Score=226.17  Aligned_cols=113  Identities=21%  Similarity=0.293  Sum_probs=96.0

Q ss_pred             CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccc
Q 041867          594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ  673 (776)
Q Consensus       594 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~  673 (776)
                      .....|..+++|+.|+|++|+++.+.+.+|.++..+++|.|..|+|..+....|.++..|++|+|.+|+|++.-|..|..
T Consensus       265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~  344 (498)
T KOG4237|consen  265 CPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT  344 (498)
T ss_pred             ChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence            34466889999999999999999998899999999999999999998777788888999999999999999988888888


Q ss_pred             ccccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCC
Q 041867          674 FATFNESSYEGNTFLCGLPLP---------------ICRSPATMSEAS  706 (776)
Q Consensus       674 ~~~l~~~~~~~n~~~c~~~~~---------------~c~~~~~~~~~~  706 (776)
                      +..+..+.+-+|||.|+|.+.               .|..|....+.+
T Consensus       345 ~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~  392 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP  392 (498)
T ss_pred             cceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc
Confidence            888888999999999999763               588777665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=6.9e-27  Score=225.90  Aligned_cols=290  Identities=20%  Similarity=0.193  Sum_probs=173.9

Q ss_pred             CCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCC-CcCcccCCcccccCCCC
Q 041867           82 PSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSS-NQLTGSISSSPLIHLTS  160 (776)
Q Consensus        82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~  160 (776)
                      +.-..++|..|+|+.    +|+.+|+.+++|+.||||+|.|+.+.|++|.++++|..|-+-+ |+|+ .+|.+.|.++.+
T Consensus        67 ~~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~s  141 (498)
T KOG4237|consen   67 PETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSS  141 (498)
T ss_pred             CcceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence            467889999999985    9999999999999999999999999999999999988776555 9998 999999999999


Q ss_pred             CCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867          161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET  240 (776)
Q Consensus       161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  240 (776)
                      |+.|.+..|++. -+....+..++++..|.+..|.+......                            .+..+..++.
T Consensus       142 lqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~----------------------------tf~~l~~i~t  192 (498)
T KOG4237|consen  142 LQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKG----------------------------TFQGLAAIKT  192 (498)
T ss_pred             HHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccc----------------------------cccchhccch
Confidence            999999999987 56667889999999999888876533221                            2223344444


Q ss_pred             EEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867          241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN  320 (776)
Q Consensus       241 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n  320 (776)
                      +.+..|.+...      .+++.+....       ...+..+++........+.+.++...-+..+......+..--.+.+
T Consensus       193 lhlA~np~icd------CnL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d  259 (498)
T KOG4237|consen  193 LHLAQNPFICD------CNLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED  259 (498)
T ss_pred             HhhhcCccccc------cccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence            55544432100      1111111100       0111122222222223333333332222222111111111111111


Q ss_pred             cCccCCC-ccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEE
Q 041867          321 ALDGSIP-SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYI  399 (776)
Q Consensus       321 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L  399 (776)
                      ...+.-| ..|..+++|+.|++++|+++ .+....|.+...+++|.|..|++.           ......|.++..|+.|
T Consensus       260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~-----------~v~~~~f~~ls~L~tL  327 (498)
T KOG4237|consen  260 FPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLE-----------FVSSGMFQGLSGLKTL  327 (498)
T ss_pred             CcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHH-----------HHHHHhhhccccceee
Confidence            1222222 24556666666666666665 555566666666666664444432           2334455666666666


Q ss_pred             eccCCccccCCCcccCCCCCCcEEEcccccc
Q 041867          400 IMPNNHLEGPIPVEFCQLDLLQILDISDNNI  430 (776)
Q Consensus       400 ~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l  430 (776)
                      +|.+|+|+...|.+|..+.+|.+|++-.|++
T Consensus       328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             eecCCeeEEEecccccccceeeeeehccCcc
Confidence            6666666666666666666666666665554

>PLN03210 Resistant to P

Probab=99.86  E-value=2.3e-20  Score=223.96  Aligned_cols=315  Identities=21%  Similarity=0.203  Sum_probs=162.7

Q ss_pred             CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEc
Q 041867          262 KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDL  341 (776)
Q Consensus       262 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  341 (776)
                      +|+.|.+.++.+... |..+ ...+|+.|++++|.+. .++..... +++|+.++++++.....+| .+..+++|+.|++
T Consensus       590 ~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~-~L~~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLE-KLWDGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCCC-CCcC-CccCCcEEECcCcccc-cccccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence            344444444443332 2222 2344445555544443 33333322 4444555554443222333 2444444555555


Q ss_pred             cCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCc
Q 041867          342 SNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ  421 (776)
Q Consensus       342 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  421 (776)
                      ++|.....+|..+. .+++|+.|++++|...           ..+|..+ ++++|+.|++++|......|..   .++|+
T Consensus       665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L-----------~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~  728 (1153)
T PLN03210        665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENL-----------EILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNIS  728 (1153)
T ss_pred             cCCCCccccchhhh-ccCCCCEEeCCCCCCc-----------CccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence            44433334443332 3444444444333211           1222222 3445555555554333222221   23444


Q ss_pred             EEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC
Q 041867          422 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL  501 (776)
Q Consensus       422 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  501 (776)
                      .|++++|.+.. .|..+...+|++|.+.++....     +. +.+....+..+...++|+.|++++|......|..+.++
T Consensus       729 ~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~-----l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L  801 (1153)
T PLN03210        729 WLDLDETAIEE-FPSNLRLENLDELILCEMKSEK-----LW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL  801 (1153)
T ss_pred             eeecCCCcccc-ccccccccccccccccccchhh-----cc-ccccccchhhhhccccchheeCCCCCCccccChhhhCC
Confidence            55555554432 2222233444444443322110     00 01111222223345678888888887666677778888


Q ss_pred             CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecccccccc
Q 041867          502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLL  581 (776)
Q Consensus       502 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  581 (776)
                      ++|+.|++++|...+.+|... .                                                     +++|
T Consensus       802 ~~L~~L~Ls~C~~L~~LP~~~-~-----------------------------------------------------L~sL  827 (1153)
T PLN03210        802 HKLEHLEIENCINLETLPTGI-N-----------------------------------------------------LESL  827 (1153)
T ss_pred             CCCCEEECCCCCCcCeeCCCC-C-----------------------------------------------------cccc
Confidence            888888888775443444322 1                                                     3478


Q ss_pred             ceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccc
Q 041867          582 SGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  661 (776)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  661 (776)
                      +.|++++|......|..   .++|+.|+|++|.++. .|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|
T Consensus       828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            88888887655444443   3578888888888874 5677888888888888885444456777778888888888887


Q ss_pred             c
Q 041867          662 N  662 (776)
Q Consensus       662 ~  662 (776)
                      .
T Consensus       904 ~  904 (1153)
T PLN03210        904 G  904 (1153)
T ss_pred             c
Confidence            4

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=1.4e-19  Score=217.21  Aligned_cols=172  Identities=23%  Similarity=0.340  Sum_probs=108.4

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCC------CcCchhhhhcCCCCcEEEccCccccceEecCCCcCCC
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT------GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG  384 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~  384 (776)
                      +|+.|++++|.+. .+|..+ .+++|+.|++.++...      ..++...+..+++|+.|++++|.           ...
T Consensus       726 nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----------~l~  792 (1153)
T PLN03210        726 NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----------SLV  792 (1153)
T ss_pred             CcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----------Ccc
Confidence            4555555555544 333332 3455555555443211      01122222234677777755443           334


Q ss_pred             CCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCc
Q 041867          385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYN  464 (776)
Q Consensus       385 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n  464 (776)
                      .+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......+..  +.++++|++++|.+.          
T Consensus       793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~----------  859 (1153)
T PLN03210        793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE----------  859 (1153)
T ss_pred             ccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc----------
Confidence            567778888888888888875444556554 6788888888887654443332  457888877776664          


Q ss_pred             cccccCChhhccCccCCEEEcccc-cCCccchhhhcCCCCCCEEeCCCCc
Q 041867          465 RLNGSIPDWVDGLSQLSHLILGHN-NLEGEVLVQLCELNQLQLLDLSNNN  513 (776)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~  513 (776)
                          .+|.++..+++|+.|++++| ++. ..+..+..++.|+.+++++|.
T Consensus       860 ----~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        860 ----EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ----cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence                56778888999999999885 455 455667788889999998885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6.9e-21  Score=210.91  Aligned_cols=262  Identities=26%  Similarity=0.305  Sum_probs=152.8

Q ss_pred             CEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEcc
Q 041867          288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS  367 (776)
Q Consensus       288 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls  367 (776)
                      ..|+++.+.++ .+|..+.   ++|+.|++..|+++. +|.   .+++|++|++++|+++ .+|.    ..++|+.|+++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls  270 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF  270 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeecc
Confidence            34555555554 4444432   245555555555552 332   1355666666666665 5553    13456666655


Q ss_pred             CccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEE
Q 041867          368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH  447 (776)
Q Consensus       368 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  447 (776)
                      +|.+.            .+|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++.+...   .+..|+.|+
T Consensus       271 ~N~L~------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~  328 (788)
T PRK15387        271 SNPLT------------HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLW  328 (788)
T ss_pred             CCchh------------hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCC---Ccccccccc
Confidence            44433            12221   1345566666666653 232   23556666666666664322   133455565


Q ss_pred             cCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcc
Q 041867          448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL  527 (776)
Q Consensus       448 l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  527 (776)
                      +++|++.              .+|..   ..+|+.|+|++|++++. |..   .++|+.|++++|++.. +|..      
T Consensus       329 Ls~N~L~--------------~LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l------  380 (788)
T PRK15387        329 AYNNQLT--------------SLPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL------  380 (788)
T ss_pred             cccCccc--------------ccccc---ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc------
Confidence            5555443              12211   13677888888877753 221   3567777888887764 2321      


Q ss_pred             cccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCe
Q 041867          528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQT  607 (776)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  607 (776)
                                                                        +++|+.|++++|++++ +|..   .++|+.
T Consensus       381 --------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~  406 (788)
T PRK15387        381 --------------------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKE  406 (788)
T ss_pred             --------------------------------------------------ccccceEEecCCcccC-CCCc---ccCCCE
Confidence                                                              1257788888888874 4432   257888


Q ss_pred             eecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcc
Q 041867          608 LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT  671 (776)
Q Consensus       608 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~  671 (776)
                      |++++|+++++ |..   ..+|+.|++++|+++ .+|+.+..+++|+.|++++|++++..|..+
T Consensus       407 LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        407 LMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             EEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            88888888764 433   246778888888887 677778888888888888888887666644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=3.6e-19  Score=197.34  Aligned_cols=260  Identities=26%  Similarity=0.294  Sum_probs=199.6

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++            .+|.. 
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt------------sLP~l-  260 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT------------SLPVL-  260 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC------------cccCc-
Confidence            4668899999998 6777665  48999999999998 7885    3689999997777654            23432 


Q ss_pred             cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                        .++|+.|++++|.+.. +|..   ..+|+.|++++|++...+.   .+++|+.|++++|++.+              +
T Consensus       261 --p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--------------L  317 (788)
T PRK15387        261 --PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--------------L  317 (788)
T ss_pred             --ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc--------------C
Confidence              3689999999999884 4432   3578899999999986543   25789999888887762              2


Q ss_pred             ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                      |..   ..+|+.|++++|.+++. |.   ...+|+.|++++|++++. |..                             
T Consensus       318 p~l---p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~L-P~l-----------------------------  360 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLASL-PTL-----------------------------  360 (788)
T ss_pred             CCC---cccccccccccCccccc-cc---cccccceEecCCCccCCC-CCC-----------------------------
Confidence            221   24688899999999853 32   125799999999999853 321                             


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE  630 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  630 (776)
                                                 +++|+.|++++|++.+ +|..   .++|+.|++++|+++++ |..   .++|+
T Consensus       361 ---------------------------p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~  405 (788)
T PRK15387        361 ---------------------------PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PVL---PSELK  405 (788)
T ss_pred             ---------------------------Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CCc---ccCCC
Confidence                                       1268889999999985 5543   35799999999999965 333   36899


Q ss_pred             EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCC
Q 041867          631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL  691 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~  691 (776)
                      .|++++|+++. +|..+   .+|+.|++++|+|+ .+|..+..+..+..+++++|++.+..
T Consensus       406 ~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        406 ELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             EEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence            99999999984 66543   46889999999999 67888889999999999999987543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=3.5e-18  Score=191.08  Aligned_cols=180  Identities=27%  Similarity=0.374  Sum_probs=89.9

Q ss_pred             cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867          287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL  366 (776)
Q Consensus       287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  366 (776)
                      ...|+++++.++ .+|..+.   +.++.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            344555555554 3443332   24555566666555 3343332  35666666666665 5555432   25666665


Q ss_pred             cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEE
Q 041867          367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV  446 (776)
Q Consensus       367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  446 (776)
                      ++|.+.            .+|..+.  .+|+.|++++|++.. +|..+.  ++|+.|++++|++...+.. + +.+|+.|
T Consensus       249 s~N~L~------------~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l-p~sL~~L  309 (754)
T PRK15370        249 SINRIT------------ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAH-L-PSGITHL  309 (754)
T ss_pred             cCCccC------------cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCccc-c-hhhHHHH
Confidence            444433            2333332  356666666666663 344332  3566666666666543221 1 2344555


Q ss_pred             EcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCccc
Q 041867          447 HLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH  515 (776)
Q Consensus       447 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  515 (776)
                      ++++|.+.              .+|..+  .++|+.|++++|.++. .|..+.  ++|+.|++++|++.
T Consensus       310 ~Ls~N~Lt--------------~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~  359 (754)
T PRK15370        310 NVQSNSLT--------------ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT  359 (754)
T ss_pred             HhcCCccc--------------cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence            44444433              122211  1456666666666664 233332  46666666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.6e-17  Score=185.90  Aligned_cols=182  Identities=26%  Similarity=0.410  Sum_probs=90.7

Q ss_pred             CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA  365 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  365 (776)
                      .++.|++++|.++ .+|..+.   ++|+.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.   .+|+.|+
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~  268 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD  268 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence            3444444444444 3333322   24555555555544 2333222  24555555555555 5554432   2455555


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ  445 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  445 (776)
                      +++|++.            .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+...+...  +.+|+.
T Consensus       269 Ls~N~L~------------~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~  329 (754)
T PRK15370        269 LFHNKIS------------CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL--PPGLKT  329 (754)
T ss_pred             CcCCccC------------ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc--ccccee
Confidence            4444332            1233222  355666666665553 232221  35566666666665432211  245666


Q ss_pred             EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC
Q 041867          446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG  516 (776)
Q Consensus       446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  516 (776)
                      |++++|.++              .+|..+  .++|+.|++++|+++. .|..+  .++|+.|++++|+++.
T Consensus       330 L~Ls~N~Lt--------------~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        330 LEAGENALT--------------SLPASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN  381 (754)
T ss_pred             ccccCCccc--------------cCChhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence            655555443              123222  2577788888887763 34433  2577888888887764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.2e-18  Score=180.18  Aligned_cols=286  Identities=22%  Similarity=0.219  Sum_probs=146.3

Q ss_pred             eecccccCc-cCCCccCCCCCCCCEEEccCCcCCCc----CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcc
Q 041867          315 FNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRW  389 (776)
Q Consensus       315 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~  389 (776)
                      |++..+.+. ......+..+.+|+.|+++++.+++.    ++... ...+++++++++++.+..     ........+..
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~   76 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGR-----IPRGLQSLLQG   76 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCC-----cchHHHHHHHH
Confidence            455555554 22233445566677777777776422    22222 234567777765554321     00000112334


Q ss_pred             ccCCCCCCEEeccCCccccCCCcccCCCCC---CcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccc
Q 041867          390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDL---LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRL  466 (776)
Q Consensus       390 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l  466 (776)
                      +..+++|+.|++++|.+.+..+..+..+.+   |+.|++++|.+......                              
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~------------------------------  126 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR------------------------------  126 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH------------------------------
Confidence            555666667777666665444444433333   66666666655421000                              


Q ss_pred             cccCChhhccC-ccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhh
Q 041867          467 NGSIPDWVDGL-SQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQF  541 (776)
Q Consensus       467 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  541 (776)
                        .+...+..+ ++|+.|++++|.+++.    ....+..+++|++|++++|.+.+.....+....               
T Consensus       127 --~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l---------------  189 (319)
T cd00116         127 --LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL---------------  189 (319)
T ss_pred             --HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH---------------
Confidence              112233444 5666666666666622    233455556667777766665531110000000               


Q ss_pred             hcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----ChhhhccCccCCeeecccccccc
Q 041867          542 EIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIGNLTRIQTLNLSHNDLIG  617 (776)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~  617 (776)
                                                        ...++|++|++++|.+.+.    ++..+..+++|++|++++|.+++
T Consensus       190 ----------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         190 ----------------------------------KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             ----------------------------------HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence                                              0012566777777766532    23345556677777777777664


Q ss_pred             cCccccC-----CCCCCCEEECcCCccCC----cCCccccCCCCCCEEecccccCccc----CCCccccc-cccCccccc
Q 041867          618 LIPSTFS-----NLKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE----IPEWTAQF-ATFNESSYE  683 (776)
Q Consensus       618 ~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~----~p~~~~~~-~~l~~~~~~  683 (776)
                      .....+.     ..+.|++|++++|.++.    .+.+.+..+++|+.+++++|+++..    ....+... ..++.+++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            3222221     23677777777777751    2234445556777777777777632    22223333 456666666


Q ss_pred             CCCC
Q 041867          684 GNTF  687 (776)
Q Consensus       684 ~n~~  687 (776)
                      +|||
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            6665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=3.8e-18  Score=178.39  Aligned_cols=262  Identities=26%  Similarity=0.268  Sum_probs=143.0

Q ss_pred             CcccceeecccccCcc----CCCccCCCCCCCCEEEccCCcCCCcCch------hhhhcCCCCcEEEccCccccceEecC
Q 041867          309 LPSLYLFNNSMNALDG----SIPSSLGNMKFLQILDLSNNHLTGEIPE------HLAVGCVNLQSLALSNNNLQEGLYLN  378 (776)
Q Consensus       309 l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~l~~L~~L~ls~n~l~~~l~l~  378 (776)
                      ++.|+.++++++.++.    .++..+...+++++++++++.+. ..+.      ..+..+++|+.|++++|.+.      
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------   94 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKGCGLQELDLSDNALG------   94 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhcCceeEEEccCCCCC------
Confidence            3445555555555432    12333444555666666666554 1111      12234567777775555442      


Q ss_pred             CCcCCCCCCccccCCC---CCCEEeccCCccccC----CCcccCCC-CCCcEEEccccccCCCCCCCCCCCcccEEEcCC
Q 041867          379 NNSLSGKIPRWLGNLT---WLQYIIMPNNHLEGP----IPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSK  450 (776)
Q Consensus       379 ~n~l~~~~~~~~~~l~---~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  450 (776)
                           +..+..+..+.   +|++|++++|.+.+.    +...+..+ ++|+.|++++|.+++....              
T Consensus        95 -----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------  155 (319)
T cd00116          95 -----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE--------------  155 (319)
T ss_pred             -----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--------------
Confidence                 22333333333   377788877776632    22234455 6777777777766531110              


Q ss_pred             cccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCc
Q 041867          451 NMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT  526 (776)
Q Consensus       451 n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  526 (776)
                                        ..+..+..+++|+.|++++|.+++.    .+..+..+++|+.|++++|.+.+.....+....
T Consensus       156 ------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         156 ------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             ------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence                              1233455566677777777766632    223344556777777777766532221111100


Q ss_pred             ccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc-----c
Q 041867          527 LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG-----N  601 (776)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~  601 (776)
                                                                       ..+++|++|++++|.+++.....+.     .
T Consensus       218 -------------------------------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~  248 (319)
T cd00116         218 -------------------------------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSP  248 (319)
T ss_pred             -------------------------------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence                                                             1134677777777777643332222     2


Q ss_pred             CccCCeeeccccccccc----CccccCCCCCCCEEECcCCccCCc----CCccccCC-CCCCEEecccccC
Q 041867          602 LTRIQTLNLSHNDLIGL----IPSTFSNLKHVESLDLSNNKLNGK----IPHQLVEL-KTLEVFSVAYNNL  663 (776)
Q Consensus       602 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l-~~L~~L~l~~N~l  663 (776)
                      .+.|+.|++++|.+++.    ....+..+++|+.+++++|.++..    ....+... +.|+++++.+|++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            36788888888877622    234455667888888888888744    33444444 6788888888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3.3e-18  Score=146.75  Aligned_cols=163  Identities=26%  Similarity=0.427  Sum_probs=131.4

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.++                      
T Consensus        47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p----------------------  102 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP----------------------  102 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc----------------------
Confidence            45555778888999999999888 56778888999999999988886 6777777654                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK  627 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  627 (776)
                                                     .|+.|||++|++. ...|..|..++.|+.|+|+.|.+. ++|...++++
T Consensus       103 -------------------------------~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt  150 (264)
T KOG0617|consen  103 -------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT  150 (264)
T ss_pred             -------------------------------hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc
Confidence                                           7888999999887 357888999999999999999997 6677889999


Q ss_pred             CCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccccccc---CcccccCCCCCC
Q 041867          628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF---NESSYEGNTFLC  689 (776)
Q Consensus       628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l---~~~~~~~n~~~c  689 (776)
                      +|+.|.+..|.+. .+|..++.++.|+.|.+++|+++...|+ ++.+.-.   .....+.|||.-
T Consensus       151 ~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  151 NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            9999999999997 7888899999999999999999965555 5554332   224467788754

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=4.1e-14  Score=158.38  Aligned_cols=118  Identities=35%  Similarity=0.585  Sum_probs=107.9

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCcccCCCccccc-cccCcccccCCCCCCCCCC-CCCC
Q 041867          660 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR  697 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~-~~c~  697 (776)
                      +|+++|.+|..+... ..+..+++.+|+..|++|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876653 4567788999999999763 4564

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=3.4e-16  Score=134.48  Aligned_cols=182  Identities=29%  Similarity=0.503  Sum_probs=133.1

Q ss_pred             CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      +.+++.|.+++|+++ .+|..+..+.+|+.|++++|++.                                     ..|.
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------------------------~lp~   73 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------------------------ELPT   73 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------------------------hcCh
Confidence            444555555555555 33334555555555555555554                                     5566


Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                      .+..++.|+.|+++-|++. ..|..|..+|.|+.||++.|++.+ ..|..|..+                          
T Consensus        74 ~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m--------------------------  126 (264)
T KOG0617|consen   74 SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM--------------------------  126 (264)
T ss_pred             hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHH--------------------------
Confidence            6777888888888888877 677888888888888888888763 345555443                          


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES  631 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  631 (776)
                                                 ..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. ..|..++.++.|++
T Consensus       127 ---------------------------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  127 ---------------------------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             ---------------------------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence                                       36888999999998 88889999999999999999998 45788999999999


Q ss_pred             EECcCCccCCcCCccccCCC---CCCEEecccccCcccCCC
Q 041867          632 LDLSNNKLNGKIPHQLVELK---TLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       632 L~Ls~N~l~~~~~~~l~~l~---~L~~L~l~~N~l~~~~p~  669 (776)
                      |++.+|+++ .+|..++.+.   +=+.+.+.+|++...+.+
T Consensus       178 lhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  178 LHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             Hhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            999999998 6666666543   224566778888755544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=8.7e-13  Score=134.90  Aligned_cols=176  Identities=30%  Similarity=0.443  Sum_probs=141.8

Q ss_pred             CCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867          416 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL  495 (776)
Q Consensus       416 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  495 (776)
                      .+.--...|++.|++..++...-.+..|+.+.+..|.+.              .+|..+..+..|+.++|+.|+++ ..|
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--------------~ip~~i~~L~~lt~l~ls~NqlS-~lp  137 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--------------TIPEAICNLEALTFLDLSSNQLS-HLP  137 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--------------ecchhhhhhhHHHHhhhccchhh-cCC
Confidence            445556788888988865555444677788877777665              78888899999999999999988 566


Q ss_pred             hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867          496 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG  575 (776)
Q Consensus       496 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (776)
                      ..++.|+ |+.|-+++|+++ .+|..++.                                                   
T Consensus       138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~---------------------------------------------------  164 (722)
T KOG0532|consen  138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGL---------------------------------------------------  164 (722)
T ss_pred             hhhhcCc-ceeEEEecCccc-cCCccccc---------------------------------------------------
Confidence            6778777 899999999987 44444432                                                   


Q ss_pred             ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867          576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  655 (776)
Q Consensus       576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  655 (776)
                        .+.|..||.+.|.+. .+|..+.++.+|+.|++..|++..++++ +..| .|..||+|.|+++ .+|-.|.+|..|++
T Consensus       165 --~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  165 --LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             --chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccCcee-ecchhhhhhhhhee
Confidence              237889999999998 6778899999999999999999976544 4444 6889999999998 88999999999999


Q ss_pred             EecccccCcc
Q 041867          656 FSVAYNNLSG  665 (776)
Q Consensus       656 L~l~~N~l~~  665 (776)
                      |-|.+|++..
T Consensus       239 l~LenNPLqS  248 (722)
T KOG0532|consen  239 LQLENNPLQS  248 (722)
T ss_pred             eeeccCCCCC
Confidence            9999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=1e-11  Score=117.03  Aligned_cols=131  Identities=28%  Similarity=0.267  Sum_probs=85.7

Q ss_pred             ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      +.|++++|++|.|+.+ ..+..-.|.++.|++|+|.|..+..  ++                                  
T Consensus       284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n--La----------------------------------  326 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN--LA----------------------------------  326 (490)
T ss_pred             hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh--hh----------------------------------
Confidence            5677778888877733 3455566777778887777763322  11                                  


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                         .+++|+.||||+|.++. +...-..+-+.+.|.|+.|.|.++  ..+..+-+|..||+++|
T Consensus       327 -------------------~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  327 -------------------ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             -------------------hcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence                               13467777777777763 334444566777777777777654  55667777777777777


Q ss_pred             ccCCcCC-ccccCCCCCCEEecccccCcccC
Q 041867          638 KLNGKIP-HQLVELKTLEVFSVAYNNLSGEI  667 (776)
Q Consensus       638 ~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~  667 (776)
                      +|..... ..++++|-|+.+.+.+||+.+.+
T Consensus       385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  385 QIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             chhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            7763321 35667777777777777777533

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.6e-11  Score=122.01  Aligned_cols=192  Identities=26%  Similarity=0.242  Sum_probs=127.8

Q ss_pred             CCCCCCcEEECCCCCCCCcc-chhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhc
Q 041867            2 HNFTNLEYLTLHGSSLHISL-LQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISES   80 (776)
Q Consensus         2 ~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~   80 (776)
                      ..|++++.||||.|=+..-. ...+...+|+|+.|+|+.|.+........-..+++|+.|.++.|.++  -.....+...
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls--~k~V~~~~~~  220 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS--WKDVQWILLT  220 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC--HHHHHHHHHh
Confidence            35788888888888665432 22335678888888888888753333322335788888888888443  2222333337


Q ss_pred             CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccccc-CccccCCCCCCEEeCCCCcCcccCCccc-----
Q 041867           81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSL-PWCMTNLTSLRILDVSSNQLTGSISSSP-----  154 (776)
Q Consensus        81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~-----  154 (776)
                      +|+|+.|+|.+|....    +......-++.|+.|||++|.+.... ....+.++.|+.|+++.+++. ++....     
T Consensus       221 fPsl~~L~L~~N~~~~----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~  295 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIIL----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLD  295 (505)
T ss_pred             CCcHHHhhhhcccccc----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc-hhcCCCccchh
Confidence            8888888888885211    22234455677888899888876432 244667888888888888887 432212     


Q ss_pred             -ccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccc
Q 041867          155 -LIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEI  200 (776)
Q Consensus       155 -~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  200 (776)
                       ...+++|++|++..|++...-....+..+++|+.|.+..|.+..+.
T Consensus       296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             hhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence             3567888888888888864444455666778888888777776543

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=1.5e-10  Score=129.92  Aligned_cols=114  Identities=32%  Similarity=0.493  Sum_probs=102.1

Q ss_pred             CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccc
Q 041867          503 QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLS  582 (776)
Q Consensus       503 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  582 (776)
                      .++.|+|++|.+.+.+|..+..++                                                     +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            377899999999988888776644                                                     899


Q ss_pred             eEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCC-CCCCEEecccc
Q 041867          583 GLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN  661 (776)
Q Consensus       583 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N  661 (776)
                      .|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.|+|++|++++.+|..+..+ .++..+++++|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 57789999999


Q ss_pred             cCcccCCC
Q 041867          662 NLSGEIPE  669 (776)
Q Consensus       662 ~l~~~~p~  669 (776)
                      +..|..|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            87765543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.9e-11  Score=120.20  Aligned_cols=166  Identities=20%  Similarity=0.225  Sum_probs=110.8

Q ss_pred             CCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867           27 SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL  106 (776)
Q Consensus        27 ~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l  106 (776)
                      +++++|+...|.++.+...........|++++.|+|+.|-+.-...... +.+.+|+|+.|+++.|.+..   -.....-
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNls~Nrl~~---~~~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNLSSNRLSN---FISSNTT  193 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-HHHhcccchhcccccccccC---Cccccch
Confidence            4678888888888877522111245568899999999884332233333 34489999999999998865   2222222


Q ss_pred             CCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCC
Q 041867          107 CSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSR  185 (776)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~  185 (776)
                      ..+++|+.|.|+.|+++-. +......+|+|+.|+|..|... .+......-+..|+.|||++|++...........++.
T Consensus       194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            3567889999999988732 2334457889999999988532 2333345667788999999888764333344667788


Q ss_pred             CcEEEcccCccc
Q 041867          186 LKTFYADNNELN  197 (776)
Q Consensus       186 L~~L~l~~n~~~  197 (776)
                      |+.|+++.+.+.
T Consensus       273 L~~Lnls~tgi~  284 (505)
T KOG3207|consen  273 LNQLNLSSTGIA  284 (505)
T ss_pred             hhhhhccccCcc
Confidence            888887777664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1.4e-10  Score=105.77  Aligned_cols=126  Identities=24%  Similarity=0.350  Sum_probs=35.4

Q ss_pred             CCCCCCEEeCCCCcCccccCCCcCC-CCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867           28 IFPSLKNLSISYCEVNGVVHGQGFP-HFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL  106 (776)
Q Consensus        28 ~~~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l  106 (776)
                      +..+++.|+|++|.|.. +.  .+. .+.+|+.|++++|.|.  .  .+.+. .+++|++|++++|.|+.    +.. .+
T Consensus        17 n~~~~~~L~L~~n~I~~-Ie--~L~~~l~~L~~L~Ls~N~I~--~--l~~l~-~L~~L~~L~L~~N~I~~----i~~-~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-IE--NLGATLDKLEVLDLSNNQIT--K--LEGLP-GLPRLKTLDLSNNRISS----ISE-GL   83 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S------TT-----TT--EEE--SS---S-----CH-HH
T ss_pred             ccccccccccccccccc-cc--chhhhhcCCCEEECCCCCCc--c--ccCcc-ChhhhhhcccCCCCCCc----ccc-ch
Confidence            34445556666555542 22  233 3455555666655332  1  11223 45566666666666543    221 22


Q ss_pred             -CCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCc---ccccCCCCCCEEecc
Q 041867          107 -CSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISS---SPLIHLTSIEKLYLS  167 (776)
Q Consensus       107 -~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~  167 (776)
                       ..+++|++|++++|+|... .-..+..+++|++|++.+|.++ .-+.   ..+..+|+|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence             2355666666666665532 1234556666666666666665 2222   135567777777643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=2e-10  Score=123.56  Aligned_cols=143  Identities=36%  Similarity=0.488  Sum_probs=108.2

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      .+|..+..+++|+.|++++|++.... ......++|+.|++++|++..+.+.. ..                        
T Consensus       154 ~l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l~~~~-~~------------------------  207 (394)
T COG4886         154 SLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPPEI-EL------------------------  207 (394)
T ss_pred             hhhhhhhccccccccccCCchhhhhh-hhhhhhhhhhheeccCCccccCchhh-hh------------------------
Confidence            33455778888999999999888543 33446788999999999887544321 10                        


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                   +..|++|++++|.+. ..+..+..++++..|.+.+|++... +..+..+++
T Consensus       208 -----------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~  256 (394)
T COG4886         208 -----------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSN  256 (394)
T ss_pred             -----------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccc
Confidence                                         235888999999654 5667788889999999999988753 567888888


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCc
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  670 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~  670 (776)
                      ++.|++++|+++...+  +..+.+++.|++++|.++...|..
T Consensus       257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            9999999999985444  788899999999999988766653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=5.5e-11  Score=108.36  Aligned_cols=85  Identities=29%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcE
Q 041867          109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT  188 (776)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  188 (776)
                      +.+|+.|+|++|.|+..  +.+..++.|++|++++|.++ .+..+....+++|++|++++|.+...-....+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            34444444444444432  22444444444444444444 3332111234444444444444443223333444455555


Q ss_pred             EEcccCcc
Q 041867          189 FYADNNEL  196 (776)
Q Consensus       189 L~l~~n~~  196 (776)
                      |++.+|++
T Consensus       118 L~L~~NPv  125 (175)
T PF14580_consen  118 LSLEGNPV  125 (175)
T ss_dssp             EE-TT-GG
T ss_pred             eeccCCcc
Confidence            55554444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=1.3e-11  Score=126.47  Aligned_cols=195  Identities=26%  Similarity=0.376  Sum_probs=161.2

Q ss_pred             CCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867          284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS  363 (776)
Q Consensus       284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  363 (776)
                      +.--...|++.|++. .+|..++. +..|+.+.+..|.+. .+|..+..+..|+.+||+.|+++ .+|..++  .--|+.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv  147 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV  147 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence            344567899999998 88888776 678999999999998 77899999999999999999999 9999887  335899


Q ss_pred             EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867          364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI  443 (776)
Q Consensus       364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  443 (776)
                      |-+++|+++            .+|..++.+..|..||.+.|.+. ..|..++++.+|+.|.++.|.+...++... ...|
T Consensus       148 li~sNNkl~------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL  213 (722)
T KOG0532|consen  148 LIVSNNKLT------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL  213 (722)
T ss_pred             EEEecCccc------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence            997777765            68888899999999999999998 677889999999999999999986655544 6778


Q ss_pred             cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC---CCCCEEeCCCCc
Q 041867          444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL---NQLQLLDLSNNN  513 (776)
Q Consensus       444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~  513 (776)
                      ..|+++.|++.              .+|-.|..+..|++|-|.+|.+.. .|..++..   .-.++|+..-++
T Consensus       214 i~lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  214 IRLDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeecccCcee--------------ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            88977777775              788999999999999999999984 44445433   234667776663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=1.5e-11  Score=118.88  Aligned_cols=194  Identities=21%  Similarity=0.227  Sum_probs=111.3

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccC-------------ccccCCCCCCEEeCCCCcC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLP-------------WCMTNLTSLRILDVSSNQL  146 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l  146 (776)
                      .+|+|++|+||.|-+...+..-...-+.++..|++|.|.+|.+...-.             .-.+.-+.|+++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            456677777777666554433333344556667777777766652111             1123345677777777766


Q ss_pred             cccCCc----ccccCCCCCCEEeccCCcccc--c-cCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEecc
Q 041867          147 TGSISS----SPLIHLTSIEKLYLSNNHFQI--P-ISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLS  219 (776)
Q Consensus       147 ~~~i~~----~~~~~l~~L~~L~L~~n~l~~--~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~  219 (776)
                      . ..+.    ..|...+.|+.+.+..|.|..  . .-...+..+++|+.|+|..|.++.....                 
T Consensus       170 e-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-----------------  231 (382)
T KOG1909|consen  170 E-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-----------------  231 (382)
T ss_pred             c-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-----------------
Confidence            4 2221    135556677777777776641  1 2223466777777777777765533221                 


Q ss_pred             CCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHH----hhcCCCCcEEEccCCCCcCcC----CCCCCCCCCcCEEE
Q 041867          220 SGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWL----LENNTKLRQLSLVNDSLGGPF----RLPIHSHKRLGMLD  291 (776)
Q Consensus       220 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~  291 (776)
                             .+...+..+++|+++.+++|.+.......+    -...|.|+.+.+.+|.++...    ..++...+.|..|+
T Consensus       232 -------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  232 -------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN  304 (382)
T ss_pred             -------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence                   122334445667777777776654443332    244577777777777776422    12344467788888


Q ss_pred             ceeccCc
Q 041867          292 ISNNNFR  298 (776)
Q Consensus       292 ls~n~l~  298 (776)
                      +++|++.
T Consensus       305 LngN~l~  311 (382)
T KOG1909|consen  305 LNGNRLG  311 (382)
T ss_pred             CCccccc
Confidence            8888873

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=1.3e-11  Score=119.39  Aligned_cols=191  Identities=19%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             CCCCCCCCCEEEccCCccccccCcc----ccCCCCCCEEeCCCCcCcccCCc-------------ccccCCCCCCEEecc
Q 041867          105 GLCSPVHLQELYIGSNDLRGSLPWC----MTNLTSLRILDVSSNQLTGSISS-------------SPLIHLTSIEKLYLS  167 (776)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~i~~-------------~~~~~l~~L~~L~L~  167 (776)
                      ++..+++|++|+||+|-+....+..    +..+..|++|.|.+|.+. ....             .....-+.|+++..+
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            3445556666666666655333322    334566666666666553 1111             012334566666666


Q ss_pred             CCccccccC----cccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867          168 NNHFQIPIS----LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL  243 (776)
Q Consensus       168 ~n~l~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  243 (776)
                      .|++. ..+    ...+...+.|+.+.+..|.|.....                        ..+...+.++++|+.||+
T Consensus       166 rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~------------------------~al~eal~~~~~LevLdl  220 (382)
T KOG1909|consen  166 RNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGV------------------------TALAEALEHCPHLEVLDL  220 (382)
T ss_pred             ccccc-cccHHHHHHHHHhccccceEEEecccccCchh------------------------HHHHHHHHhCCcceeeec
Confidence            66654 111    1224445666666666665532110                        112334556666666666


Q ss_pred             CCCCCcccCChHH---hhcCCCCcEEEccCCCCcCcCCCCC-----CCCCCcCEEEceeccCcccCC----hhhhccCcc
Q 041867          244 SHIKMNGEFPTWL---LENNTKLRQLSLVNDSLGGPFRLPI-----HSHKRLGMLDISNNNFRGHIP----IEIGDVLPS  311 (776)
Q Consensus       244 ~~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~~-----~~~~~L~~L~ls~n~l~~~~~----~~~~~~l~~  311 (776)
                      .+|.++......+   +..+++|+.+++.+|.+......+|     ...++|+.+.+.+|.++....    ..+.. .|.
T Consensus       221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~d  299 (382)
T KOG1909|consen  221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPD  299 (382)
T ss_pred             ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chh
Confidence            6665543222111   2344566666666666654333222     224566666666666552111    11122 456


Q ss_pred             cceeecccccC
Q 041867          312 LYLFNNSMNAL  322 (776)
Q Consensus       312 L~~L~l~~n~l  322 (776)
                      |..|+++.|.+
T Consensus       300 L~kLnLngN~l  310 (382)
T KOG1909|consen  300 LEKLNLNGNRL  310 (382)
T ss_pred             hHHhcCCcccc
Confidence            66666666666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=5e-10  Score=120.39  Aligned_cols=38  Identities=39%  Similarity=0.591  Sum_probs=16.7

Q ss_pred             cceEEccCCcCCCCChhhhccCccCCeeecccccccccCc
Q 041867          581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP  620 (776)
Q Consensus       581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  620 (776)
                      ++.|++++|.++...+  +..+.+++.|++++|.+...++
T Consensus       257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            4444444444442221  4444444444444444444333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=4.1e-10  Score=84.21  Aligned_cols=60  Identities=40%  Similarity=0.651  Sum_probs=33.3

Q ss_pred             cCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccC
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  663 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  663 (776)
                      +|++|++++|+++.+.++.|.++++|++|++++|.++.+.|++|..+++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555555555555555555555555555555555555555555555555543

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.1e-10  Score=110.09  Aligned_cols=129  Identities=24%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             CCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCC
Q 041867           55 KSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLT  134 (776)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  134 (776)
                      ..|+.+|+++|.|.   .+-+++. -.|+++.|++|+|.+..    +  +.+..+++|++||||+|.++. ..++-.++-
T Consensus       284 q~LtelDLS~N~I~---~iDESvK-L~Pkir~L~lS~N~i~~----v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG  352 (490)
T KOG1259|consen  284 QELTELDLSGNLIT---QIDESVK-LAPKLRRLILSQNRIRT----V--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLG  352 (490)
T ss_pred             hhhhhccccccchh---hhhhhhh-hccceeEEeccccceee----e--hhhhhcccceEeecccchhHh-hhhhHhhhc
Confidence            34555555555221   2223333 34555555555555542    2  234455555555555555542 222333445


Q ss_pred             CCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCccc
Q 041867          135 SLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN  197 (776)
Q Consensus       135 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  197 (776)
                      ++++|.|++|.+. .+.  .++++-+|..||+++|+|........++++|.|+++.+.+|++.
T Consensus       353 NIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  353 NIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             CEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5555555555554 332  24455555555555555543333344555555555555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=7e-10  Score=82.93  Aligned_cols=61  Identities=48%  Similarity=0.660  Sum_probs=58.1

Q ss_pred             cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867          579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL  639 (776)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  639 (776)
                      |+|++|++++|+++.+.+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3799999999999988889999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.6e-09  Score=116.39  Aligned_cols=86  Identities=26%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             cceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCc---CCcc-ccCCCCCCEE
Q 041867          581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGK---IPHQ-LVELKTLEVF  656 (776)
Q Consensus       581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L  656 (776)
                      |+.+++++|++. ..+..+..++.+..|++++|++...  ..+.....+..+....|++...   .... ....+.++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            788899999887 4446677888899999999988765  4566677888888888887622   2221 4556888899


Q ss_pred             ecccccCcccCCC
Q 041867          657 SVAYNNLSGEIPE  669 (776)
Q Consensus       657 ~l~~N~l~~~~p~  669 (776)
                      .+.+|++....+.
T Consensus       311 ~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  311 TLELNPIRKISSL  323 (414)
T ss_pred             ccccCcccccccc
Confidence            9999988875554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4.9e-10  Score=105.86  Aligned_cols=183  Identities=22%  Similarity=0.212  Sum_probs=119.3

Q ss_pred             CCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCcc
Q 041867            6 NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLK   85 (776)
Q Consensus         6 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~   85 (776)
                      .|++||||...|+......+++.|++|+.|.|.++.+++.+-. .+.+-++|+.|+++.|. .++.....-+.++|+.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccc-ccchhHHHHHHHhhhhHh
Confidence            4778888887776554455567888888888888888766655 67777888888888884 344444555556888888


Q ss_pred             EEEccCCCCCCCCCCcCCcCCCCC-CCCCEEEccCCccc---cccCccccCCCCCCEEeCCCCcC-cccCCcccccCCCC
Q 041867           86 YLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR---GSLPWCMTNLTSLRILDVSSNQL-TGSISSSPLIHLTS  160 (776)
Q Consensus        86 ~L~L~~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l-~~~i~~~~~~~l~~  160 (776)
                      .|+++.|.+..   +.-...+.+. ++|+.|+|++++-.   ..+..--..+|+|.+|||++|.. +..... .|-+++.
T Consensus       264 ~LNlsWc~l~~---~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~  339 (419)
T KOG2120|consen  264 ELNLSWCFLFT---EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNY  339 (419)
T ss_pred             hcCchHhhccc---hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcch
Confidence            88888888765   2222233332 47888888877422   11222234788888888887753 211111 4667788


Q ss_pred             CCEEeccCCccccccCcccccCCCCCcEEEcccC
Q 041867          161 IEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN  194 (776)
Q Consensus       161 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  194 (776)
                      |++|.++.|........-.+...+.|.+|++.++
T Consensus       340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8888888886432222233566677777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=3.5e-08  Score=113.28  Aligned_cols=107  Identities=22%  Similarity=0.308  Sum_probs=58.5

Q ss_pred             CCCCCEEeCCCCc--CccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867           29 FPSLKNLSISYCE--VNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL  106 (776)
Q Consensus        29 ~~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l  106 (776)
                      ++.|++|-+..|.  +. .++...|..++.|++||+++|  .-.+.+|..++ .+-+||+|+++++.+..    +|. .+
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~--~~l~~LP~~I~-~Li~LryL~L~~t~I~~----LP~-~l  614 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN--SSLSKLPSSIG-ELVHLRYLDLSDTGISH----LPS-GL  614 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC--CccCcCChHHh-hhhhhhcccccCCCccc----cch-HH
Confidence            3456666655554  22 333334555666666666655  44455555555 66666666666666542    443 56


Q ss_pred             CCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCC
Q 041867          107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSN  144 (776)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  144 (776)
                      .++..|.+|++..+.-....|.....+++|++|.+..-
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666666666655544344555555666666655544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.62  E-value=1.2e-09  Score=115.36  Aligned_cols=111  Identities=28%  Similarity=0.340  Sum_probs=90.2

Q ss_pred             ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867          576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  655 (776)
Q Consensus       576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  655 (776)
                      +.++.+++|||++|+++..  +.+..++.|++|||+.|.++.++--...++. |..|.+++|.++..  ..+.++.+|+.
T Consensus       184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence            4568899999999999854  4899999999999999999977555566665 99999999999844  45788999999


Q ss_pred             EecccccCcccCC-CccccccccCcccccCCCCCCCC
Q 041867          656 FSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGL  691 (776)
Q Consensus       656 L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~  691 (776)
                      ||+++|-|.+... ..+..+..|..+.++|||..|..
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999998875211 12346778889999999999953

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=6.2e-09  Score=111.92  Aligned_cols=218  Identities=28%  Similarity=0.271  Sum_probs=134.4

Q ss_pred             cCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCC
Q 041867          357 GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS  436 (776)
Q Consensus       357 ~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  436 (776)
                      .+..++.+++..|.+.+            ....+..+.+|+.|++.+|++..+. ..+..+++|++|++++|.|....+ 
T Consensus        70 ~l~~l~~l~l~~n~i~~------------~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~-  135 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK------------ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG-  135 (414)
T ss_pred             HhHhHHhhccchhhhhh------------hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc-
Confidence            46678888866666542            3344677889999999999998543 337788999999999999885433 


Q ss_pred             CCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCccc
Q 041867          437 CFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLH  515 (776)
Q Consensus       437 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~  515 (776)
                      .-.+..|+.|++++|.+..               ...+..+++|+.+++++|.+..+.+ . ...+.+++.+++.+|.+.
T Consensus       136 l~~l~~L~~L~l~~N~i~~---------------~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  136 LSTLTLLKELNLSGNLISD---------------ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhhccchhhheeccCcchh---------------ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            2223447777766666641               1224446777777777777765544 2 456667777777777665


Q ss_pred             CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCC
Q 041867          516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPI  595 (776)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  595 (776)
                      .......                                                       ...+..+++..|.++...
T Consensus       200 ~i~~~~~-------------------------------------------------------~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  200 EIEGLDL-------------------------------------------------------LKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             cccchHH-------------------------------------------------------HHHHHHhhcccccceecc
Confidence            3222111                                                       113344466666665332


Q ss_pred             hhhhccCcc--CCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867          596 PPQIGNLTR--IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       596 ~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  664 (776)
                        .+..+..  |+.+++++|++... +..+..+..+..|++++|++...  ..+...+.+..+....|++.
T Consensus       225 --~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  225 --GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             --CcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence              2222333  67777777777643 24566667777777777777633  22344455666666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=3.9e-09  Score=111.50  Aligned_cols=108  Identities=29%  Similarity=0.379  Sum_probs=83.8

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      -++.|+.|+|++|++..    .  +.+..+++|++|||++|.+....--...++. |+.|.+++|.++ .+..  +.++.
T Consensus       185 ll~ale~LnLshNk~~~----v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL~g--ie~Lk  254 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTK----V--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TLRG--IENLK  254 (1096)
T ss_pred             HHHHhhhhccchhhhhh----h--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-hhhh--HHhhh
Confidence            46788999999998865    2  3678888999999999988843333444555 889999999887 5553  78888


Q ss_pred             CCCEEeccCCccccccCcccccCCCCCcEEEcccCccc
Q 041867          160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELN  197 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  197 (776)
                      +|+.||+++|-+.+.-....++.+..|+.|+|.+|++.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999999998876555666778888899999998875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.45  E-value=2.9e-07  Score=105.89  Aligned_cols=58  Identities=29%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             ccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEECc
Q 041867          578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLS  635 (776)
Q Consensus       578 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls  635 (776)
                      .++|+.|.+..+.....+......+..++.+-+..+.+.+. .-...++++++..+.++
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            46788888888776666666666666666666666666554 23333444444444333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=9.2e-08  Score=90.78  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=34.3

Q ss_pred             cCCCCcEEEccCCCCcCcC-CCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867          259 NNTKLRQLSLVNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG  324 (776)
Q Consensus       259 ~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  324 (776)
                      -+|++..+.+..|.+.... ...+..++.+..|+++.+++......+....+++|..+.++++.+..
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            3455555555555443321 22344455555666666666544333333345666666666666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=5.4e-09  Score=98.96  Aligned_cols=207  Identities=20%  Similarity=0.118  Sum_probs=114.4

Q ss_pred             CCccEEEccCCCCCCCCCCcCCcCCCCC-CCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           82 PSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      ....++.+....+..   ...++.+.-. ..|++||||+..|+.. .-.-+..|.+|+.|.|.++++.+.+.. .+.+..
T Consensus       159 rgV~v~Rlar~~~~~---prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~  234 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQ---PRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNS  234 (419)
T ss_pred             CCeEEEEcchhhhcC---chhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccc
Confidence            456777777655543   2111122222 3589999998888742 334467888999999999998876665 788888


Q ss_pred             CCCEEeccCCc-cccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCC---CcccCccccCC
Q 041867          160 SIEKLYLSNNH-FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED---GVTFPKFLYHQ  235 (776)
Q Consensus       160 ~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~~  235 (776)
                      +|+.|+++.+. ++.....-.+..++.|.+|+++++....+.-...... -...|+.|++ +++..   ...+......+
T Consensus       235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h-ise~l~~LNl-sG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH-ISETLTQLNL-SGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh-hchhhhhhhh-hhhHhhhhhhHHHHHHHhC
Confidence            99999998775 3211111125678899999999988765442221111 1125566666 33211   11122223456


Q ss_pred             CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEcee
Q 041867          236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISN  294 (776)
Q Consensus       236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~  294 (776)
                      ++|..||++++..........+-+++.|++|.++.|..-. .....+...+.|.+|++.+
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            6666666666543211111112355666666665553221 1112244455555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2.1e-07  Score=88.35  Aligned_cols=189  Identities=16%  Similarity=0.139  Sum_probs=122.7

Q ss_pred             CCCCcEEECCCCCCCCc-cchhccCCCCCCCEEeCCCCcCccccCCCcC-CCCCCCcEEeCCCCccccCcchhHHHHhcC
Q 041867            4 FTNLEYLTLHGSSLHIS-LLQSIASIFPSLKNLSISYCEVNGVVHGQGF-PHFKSLEHLGMMSTRIALNTNFLQVISESM   81 (776)
Q Consensus         4 l~~L~~L~L~~n~~~~~-~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l   81 (776)
                      +++++.|||.+|.|++= ...+++.++|+|+.|+|+.|.+...+..  + ....+|++|-|.+..+.++  ....+...+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~--~~~s~l~~l  145 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWT--QSTSSLDDL  145 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChh--hhhhhhhcc
Confidence            56788888888888742 1234467888888888888888655442  3 3567888888888744332  223333478


Q ss_pred             CCccEEEccCCCCCCCCCCcCCcCCCC-CCCCCEEEccCCcccc--ccCccccCCCCCCEEeCCCCcCcccCCcccccCC
Q 041867           82 PSLKYLSLSYSTLGTNSSRILDRGLCS-PVHLQELYIGSNDLRG--SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHL  158 (776)
Q Consensus        82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l  158 (776)
                      |.++.|.+|.|.+...  .+.+..... -+.+++|.+..|....  .....-.-.|++..+-+..|.+...-....+..+
T Consensus       146 P~vtelHmS~N~~rq~--n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  146 PKVTELHMSDNSLRQL--NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             hhhhhhhhccchhhhh--ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            8888888888843220  111111221 1245556555554331  0111122357788888888877643333467778


Q ss_pred             CCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccc
Q 041867          159 TSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA  198 (776)
Q Consensus       159 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~  198 (776)
                      +.+--|+|+.|++..-....++.++++|..|.++.+++..
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            8888999999998866677788999999999999988764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.30  E-value=1.1e-07  Score=88.99  Aligned_cols=146  Identities=21%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             CCCCCCCCCEEEccCCccccccCc----cccCCCCCCEEeCCCCcCcccCCccc-------------ccCCCCCCEEecc
Q 041867          105 GLCSPVHLQELYIGSNDLRGSLPW----CMTNLTSLRILDVSSNQLTGSISSSP-------------LIHLTSIEKLYLS  167 (776)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~i~~~~-------------~~~l~~L~~L~L~  167 (776)
                      ++.+|++|+..+||+|.+....|.    .++..+.|++|.+++|.+- .+..+.             ...-|.|+++.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            445556666666666655543332    2334556666666666542 222211             2245667777777


Q ss_pred             CCccc-cccC--cccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867          168 NNHFQ-IPIS--LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS  244 (776)
Q Consensus       168 ~n~l~-~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  244 (776)
                      .|++. |+..  ...+.....|+++.+..|.|.....            +.           .+-..+..+++|+.||++
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv------------~~-----------L~~~gl~y~~~LevLDlq  222 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV------------TM-----------LAFLGLFYSHSLEVLDLQ  222 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh------------HH-----------HHHHHHHHhCcceeeecc
Confidence            77765 1111  1113334567777777766542210            00           111234566777777777


Q ss_pred             CCCCcccCChHHh---hcCCCCcEEEccCCCCc
Q 041867          245 HIKMNGEFPTWLL---ENNTKLRQLSLVNDSLG  274 (776)
Q Consensus       245 ~~~~~~~~~~~~~---~~l~~L~~L~L~~n~~~  274 (776)
                      .|.++-.....+.   ..-+.|+.|.+.+|-+.
T Consensus       223 DNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         223 DNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             ccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            7766533222221   12233455555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.08  E-value=4.6e-07  Score=85.02  Aligned_cols=93  Identities=20%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccc---cc-------cCccccCCCCCCEEeCCCCcCccc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR---GS-------LPWCMTNLTSLRILDVSSNQLTGS  149 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~-------~~~~~~~l~~L~~L~L~~n~l~~~  149 (776)
                      .+..+..++||+|.|.....+.....+.+-.+|+..+++.-...   ..       +..++.+||.|+..+||+|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            46677777777777765443444445555567777776653211   11       234566889999999999987644


Q ss_pred             CCc---ccccCCCCCCEEeccCCccc
Q 041867          150 ISS---SPLIHLTSIEKLYLSNNHFQ  172 (776)
Q Consensus       150 i~~---~~~~~l~~L~~L~L~~n~l~  172 (776)
                      .|.   ..+++-+.|++|.+++|.+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            443   13556677888888887654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=2.3e-07  Score=77.75  Aligned_cols=109  Identities=19%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .|+..+|++|.+....+..-...+..+.|+|++|.|++++ ..+..++.|+.|+++.|++. ..|+.+..+.+|-.||..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            3555666666666333332233346666777777766543 33666777777777777776 555555556666667766


Q ss_pred             cccCcccCCCccccccc-cCcccccCCCCCCCCC
Q 041867          660 YNNLSGEIPEWTAQFAT-FNESSYEGNTFLCGLP  692 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~~~-l~~~~~~~n~~~c~~~  692 (776)
                      +|.+. .+|... -.++ .....+..+||--+|+
T Consensus       132 ~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  132 ENARA-EIDVDL-FYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCccc-cCcHHH-hccccHHHHHhcCCcccccCc
Confidence            66665 334321 1111 1223345556655554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=1.2e-06  Score=98.28  Aligned_cols=161  Identities=20%  Similarity=0.280  Sum_probs=88.2

Q ss_pred             CCccEEEccCCCCCCCCCCcCCcCCC-CCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           82 PSLKYLSLSYSTLGTNSSRILDRGLC-SPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        82 ~~L~~L~L~~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      .+|++|++++...-.   .-.+..++ .+|+|+.|.+++-.+... .-....++|+|..||+|+++++ .+.  .+++++
T Consensus       122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK  195 (699)
T ss_pred             HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence            456666666644322   11111222 355666666665544322 1122345666777777776666 442  466677


Q ss_pred             CCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867          160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE  239 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  239 (776)
                      +|++|.+.+-.+........+.++++|+.||+|........           ++-.           ..-+.-..+|+|+
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------~ii~-----------qYlec~~~LpeLr  253 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------KIIE-----------QYLECGMVLPELR  253 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------HHHH-----------HHHHhcccCcccc
Confidence            77777666655553334445667777777777765432111           0000           0112223467899


Q ss_pred             EEEcCCCCCcccCChHHhhcCCCCcEEEccC
Q 041867          240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVN  270 (776)
Q Consensus       240 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~  270 (776)
                      .||.|++.+.+.+-+.+...-|+|+.+.+-+
T Consensus       254 fLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  254 FLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             EEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            9999998888777666656666666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.00  E-value=2e-07  Score=92.97  Aligned_cols=57  Identities=16%  Similarity=0.101  Sum_probs=30.8

Q ss_pred             CcccceeecccccCc-cCCCccCCCCCCCCEEEccCCcCCCcCc-hhhhhcCCCCcEEE
Q 041867          309 LPSLYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQSLA  365 (776)
Q Consensus       309 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~  365 (776)
                      ...|+.+.+++++.. ...-+.+..+++|+.+++..++-...-+ ..+...+++++...
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            345666667666543 2223345667788888887765421212 22223466665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=9.9e-07  Score=74.04  Aligned_cols=104  Identities=21%  Similarity=0.306  Sum_probs=81.7

Q ss_pred             ccceEEccCCcCCCCChhhhc---cCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867          580 LLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  656 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  656 (776)
                      -+..+||+.+++. .+++...   ....|+..+|++|.+...++..-...+.++.|++++|.|+ .+|+.+..++.|+.+
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            4667899999886 4555544   4456667799999999765544445568999999999998 677779999999999


Q ss_pred             ecccccCcccCCCccccccccCcccccCCC
Q 041867          657 SVAYNNLSGEIPEWTAQFATFNESSYEGNT  686 (776)
Q Consensus       657 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~  686 (776)
                      +++.|++. ..|..+.++.+|..++..+|.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            99999999 556656778888888877774

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.9e-05  Score=71.37  Aligned_cols=109  Identities=20%  Similarity=0.211  Sum_probs=71.8

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      .+.....+||++|.+..    +  ..|..++.|.+|.|++|+|+.+.|.--.-+++|..|.|.+|.+...-.-..+..++
T Consensus        40 ~~d~~d~iDLtdNdl~~----l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p  113 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRK----L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP  113 (233)
T ss_pred             cccccceecccccchhh----c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence            34466777888777753    2  36777778888888888888766665556677888888888776222223466777


Q ss_pred             CCCEEeccCCcccccc--CcccccCCCCCcEEEcccC
Q 041867          160 SIEKLYLSNNHFQIPI--SLEPLFNHSRLKTFYADNN  194 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~l~~n  194 (776)
                      +|++|.+-+|+.+...  ..-.+..+++|+.||.++-
T Consensus       114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8888888877765211  1223566777777777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=3e-06  Score=95.04  Aligned_cols=154  Identities=21%  Similarity=0.215  Sum_probs=105.9

Q ss_pred             CCCCCEEeCCCCcCc-cccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCC
Q 041867           29 FPSLKNLSISYCEVN-GVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLC  107 (776)
Q Consensus        29 ~~~L~~L~Ls~n~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~  107 (776)
                      -.+|++|++++.... ...+...-..+|.|++|.+.+-  .+.......++.++|+|+.||+|++.++.    +  .+++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l--~GIS  192 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGTNISN----L--SGIS  192 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCCCccC----c--HHHh
Confidence            368999999886432 2222212345899999999887  44444445555689999999999999875    3  4789


Q ss_pred             CCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCC---cc---cccCCCCCCEEeccCCccccccCcccc
Q 041867          108 SPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSIS---SS---PLIHLTSIEKLYLSNNHFQIPISLEPL  180 (776)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~---~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l  180 (776)
                      ++++|++|.+.+=.+.. ..-..+.+|++|++||+|..... ..+   ..   .-..+|.|+.||.|++.+...+-...+
T Consensus       193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            99999999988766653 22345678999999999977543 111   10   122488999999999887755444445


Q ss_pred             cCCCCCcEEEc
Q 041867          181 FNHSRLKTFYA  191 (776)
Q Consensus       181 ~~l~~L~~L~l  191 (776)
                      ...++|+.+.+
T Consensus       272 ~sH~~L~~i~~  282 (699)
T KOG3665|consen  272 NSHPNLQQIAA  282 (699)
T ss_pred             HhCccHhhhhh
Confidence            56667765543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.4e-05  Score=54.37  Aligned_cols=36  Identities=39%  Similarity=0.679  Sum_probs=16.2

Q ss_pred             CCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867          628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  664 (776)
                      +|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 23333445555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.5e-05  Score=54.16  Aligned_cols=36  Identities=42%  Similarity=0.739  Sum_probs=16.6

Q ss_pred             cCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN  640 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  640 (776)
                      +|++|++++|+|+.+ |..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            445555555555533 223455555555555555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.79  E-value=3.9e-05  Score=69.38  Aligned_cols=132  Identities=23%  Similarity=0.289  Sum_probs=96.2

Q ss_pred             ccEEEccCCCCCCCCCCcCCcCCCC-CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC
Q 041867           84 LKYLSLSYSTLGTNSSRILDRGLCS-PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE  162 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  162 (776)
                      =+.++|.+.++..    +  ..++. ..+...+||++|.+-..  ..|..++.|.+|.+++|+|+ .|.+.--..+++|+
T Consensus        21 e~e~~LR~lkip~----i--enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPV----I--ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK   91 (233)
T ss_pred             ccccccccccccc----h--hhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence            5667777776643    1  12332 23678899999998743  46889999999999999999 77664455678899


Q ss_pred             EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867          163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE  242 (776)
Q Consensus       163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  242 (776)
                      .|.+.+|++........+..+++|++|.+-+|++.....                    +.     .-.+..+++|+.||
T Consensus        92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~--------------------YR-----~yvl~klp~l~~LD  146 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN--------------------YR-----LYVLYKLPSLRTLD  146 (233)
T ss_pred             eEEecCcchhhhhhcchhccCCccceeeecCCchhcccC--------------------ce-----eEEEEecCcceEee
Confidence            999999998855566678899999999999998764321                    11     01244678889999


Q ss_pred             cCCCCCc
Q 041867          243 LSHIKMN  249 (776)
Q Consensus       243 l~~~~~~  249 (776)
                      ++.....
T Consensus       147 F~kVt~~  153 (233)
T KOG1644|consen  147 FQKVTRK  153 (233)
T ss_pred             hhhhhHH
Confidence            8876543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.66  E-value=0.00011  Score=64.85  Aligned_cols=126  Identities=14%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      ...+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +..+...+|..+.                       
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-----------------------   58 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-----------------------   58 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-----------------------
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-----------------------
Confidence            345677888888888874 566677777888888888888775 6655556666543                       


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV  629 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  629 (776)
                                                    .++.+.+.+ .+.......|..+++|+.+++..+ +..+....|.+. .|
T Consensus        59 ------------------------------~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   59 ------------------------------SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             ------------------------------T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             ------------------------------ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence                                          577777765 444355567777888888888765 666666777776 88


Q ss_pred             CEEECcCCccCCcCCccccCCCCCC
Q 041867          630 ESLDLSNNKLNGKIPHQLVELKTLE  654 (776)
Q Consensus       630 ~~L~Ls~N~l~~~~~~~l~~l~~L~  654 (776)
                      +.+.+.. .+..+....|.+.++|+
T Consensus       106 ~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  106 KEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             -EEE-TT-B-SS----GGG------
T ss_pred             eEEEECC-CccEECCccccccccCC
Confidence            8888776 44446666777666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.56  E-value=4.7e-06  Score=83.43  Aligned_cols=89  Identities=25%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             CCCCCcEEECCCCC-CCCccchhccCCCCCCCEEeCCCCc-CccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhc
Q 041867            3 NFTNLEYLTLHGSS-LHISLLQSIASIFPSLKNLSISYCE-VNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISES   80 (776)
Q Consensus         3 ~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~   80 (776)
                      ++|+++.|++.++. +++....++-..+++|++|++..|. ++......--.++++|++|+++.|. .+.+.-.+.+..+
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~-qi~~~gv~~~~rG  240 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP-QISGNGVQALQRG  240 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc-hhhcCcchHHhcc
Confidence            45666677666663 3333333323456777777777643 2222111122346777777777664 3333333333334


Q ss_pred             CCCccEEEccCC
Q 041867           81 MPSLKYLSLSYS   92 (776)
Q Consensus        81 l~~L~~L~L~~n   92 (776)
                      +..++.+.+.+|
T Consensus       241 ~~~l~~~~~kGC  252 (483)
T KOG4341|consen  241 CKELEKLSLKGC  252 (483)
T ss_pred             chhhhhhhhccc
Confidence            555555544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.51  E-value=0.00023  Score=62.72  Aligned_cols=80  Identities=23%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      ++++|+.+.+..+ +.    .+...+|.++++|+.+.+.+ .+.......|..+++|+.+++..+ +. .++...|.+. 
T Consensus        33 ~~~~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-  103 (129)
T PF13306_consen   33 NCTSLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-  103 (129)
T ss_dssp             T-TT-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--
T ss_pred             ccccccccccccc-cc----ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-
Confidence            4445555555443 22    23344555555555555544 333333445555555555555443 33 4444445554 


Q ss_pred             CCCEEeccC
Q 041867          160 SIEKLYLSN  168 (776)
Q Consensus       160 ~L~~L~L~~  168 (776)
                      +|+.+.+..
T Consensus       104 ~l~~i~~~~  112 (129)
T PF13306_consen  104 NLKEINIPS  112 (129)
T ss_dssp             T--EEE-TT
T ss_pred             CceEEEECC
Confidence            555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.38  E-value=0.00053  Score=70.91  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=16.7

Q ss_pred             CCCCEEECcCCccCCcCCccccCCCCCCEEecccc
Q 041867          627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  661 (776)
Q Consensus       627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  661 (776)
                      ++|++|++++|... ..|+.+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35666666666554 3333333  35666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.26  E-value=0.00082  Score=69.57  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             cCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc-cCCc
Q 041867          414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEG  492 (776)
Q Consensus       414 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  492 (776)
                      +..+..++.|++++|.+...+   -.+.+|++|.+++|.--             ..+|+.+  .++|+.|++++| .+..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-------------tsLP~~L--P~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-------------TTLPGSI--PEGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-------------ccCCchh--hhhhhheEccCcccccc
Confidence            445789999999999888553   23668999988775321             1333333  257889999888 4542


Q ss_pred             cchhhhcCCCCCCEEeCCCCcc
Q 041867          493 EVLVQLCELNQLQLLDLSNNNL  514 (776)
Q Consensus       493 ~~~~~~~~l~~L~~L~Ls~n~l  514 (776)
                       .|      ++|+.|+++.+..
T Consensus       110 -LP------~sLe~L~L~~n~~  124 (426)
T PRK15386        110 -LP------ESVRSLEIKGSAT  124 (426)
T ss_pred             -cc------cccceEEeCCCCC
Confidence             22      4577888776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.23  E-value=0.00015  Score=68.80  Aligned_cols=84  Identities=20%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCc---ccc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISS---SPL  155 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~  155 (776)
                      .|++|+.|.++.|.....+ .+.. ....+++|++|++++|+|... .-..+..+.+|..|++.+|..++ ...   ..|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~-~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf  139 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSG-GLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF  139 (260)
T ss_pred             CcchhhhhcccCCcccccc-ccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence            4556666666666222111 2221 223346666666666666521 01123445556666666665542 211   135


Q ss_pred             cCCCCCCEEec
Q 041867          156 IHLTSIEKLYL  166 (776)
Q Consensus       156 ~~l~~L~~L~L  166 (776)
                      .-+++|++||-
T Consensus       140 ~ll~~L~~LD~  150 (260)
T KOG2739|consen  140 LLLPSLKYLDG  150 (260)
T ss_pred             HHhhhhccccc
Confidence            55667776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.0012  Score=62.76  Aligned_cols=110  Identities=19%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCC--cCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcC
Q 041867            4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYC--EVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESM   81 (776)
Q Consensus         4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l   81 (776)
                      +..|+.|++.+..++....   +..+++|+.|.+|.|  .+.+..+. ....+++|++|++++|+|+....+ ..+. .+
T Consensus        42 ~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl-~pl~-~l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN---FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTL-RPLK-EL  115 (260)
T ss_pred             ccchhhhhhhccceeeccc---CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccccccc-chhh-hh
Confidence            4456666666666553322   667788999999988  44433333 344568999999999977643222 2233 67


Q ss_pred             CCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCC
Q 041867           82 PSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN  120 (776)
Q Consensus        82 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n  120 (776)
                      ++|..|++..|..+... ..-...|.-+++|++||-...
T Consensus       116 ~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cchhhhhcccCCccccc-cHHHHHHHHhhhhcccccccc
Confidence            78889999888765411 111124556778888775443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=6.2e-05  Score=71.33  Aligned_cols=84  Identities=20%  Similarity=0.118  Sum_probs=41.8

Q ss_pred             CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCC
Q 041867           81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTS  160 (776)
Q Consensus        81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~  160 (776)
                      +.+.+.|+..+|.+++    |.  ...+++.|++|.||-|+|+..  ..|..|++|++|+|..|.|.+.-.-..+.++++
T Consensus        18 l~~vkKLNcwg~~L~D----Is--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD----IS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHhhhhcccCCCccH----HH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            3455555555555543    21  233455555555555555533  235555555555555555542112224455555


Q ss_pred             CCEEeccCCccc
Q 041867          161 IEKLYLSNNHFQ  172 (776)
Q Consensus       161 L~~L~L~~n~l~  172 (776)
                      |+.|-|..|+-.
T Consensus        90 Lr~LWL~ENPCc  101 (388)
T KOG2123|consen   90 LRTLWLDENPCC  101 (388)
T ss_pred             hhhHhhccCCcc
Confidence            555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=6.3e-05  Score=71.31  Aligned_cols=84  Identities=25%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcE
Q 041867          109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT  188 (776)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  188 (776)
                      +.+.+.|+.-+|++.++  ....+++.|++|.|+-|+|+ .+..  +..+++|++|+|..|.|........+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            45678899999999865  44568999999999999998 6664  8999999999999999986556677889999999


Q ss_pred             EEcccCccc
Q 041867          189 FYADNNELN  197 (776)
Q Consensus       189 L~l~~n~~~  197 (776)
                      |.|..|+-.
T Consensus        93 LWL~ENPCc  101 (388)
T KOG2123|consen   93 LWLDENPCC  101 (388)
T ss_pred             HhhccCCcc
Confidence            999988754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.18  E-value=0.0011  Score=73.74  Aligned_cols=65  Identities=22%  Similarity=0.183  Sum_probs=29.5

Q ss_pred             CCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCC-CCCCCCCcCCcCCCCCCCCCEEEccCCcc
Q 041867           54 FKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYST-LGTNSSRILDRGLCSPVHLQELYIGSNDL  122 (776)
Q Consensus        54 l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l  122 (776)
                      +++|+.|+++.+. .+++.....+...+++|++|.+.++. +++.+   .......+++|++|++++|..
T Consensus       242 ~~~L~~l~l~~~~-~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g---l~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCG-LVTDIGLSALASRCPNLETLSLSNCSNLTDEG---LVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhh-ccCchhHHHHHhhCCCcceEccCCCCccchhH---HHHHHHhcCcccEEeeecCcc
Confidence            4555555555552 13334444444345555555555554 33311   111223345555555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.11  E-value=0.00087  Score=74.49  Aligned_cols=16  Identities=38%  Similarity=0.345  Sum_probs=9.3

Q ss_pred             hhcCCCCcEEEccCCC
Q 041867          257 LENNTKLRQLSLVNDS  272 (776)
Q Consensus       257 ~~~l~~L~~L~L~~n~  272 (776)
                      ...++.++.+.+..+.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3555666666665555

>TIGR00864 PCC polycystin cation channel protein

Probab=94.83  E-value=0.012  Score=73.71  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=38.0

Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERD  712 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  712 (776)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.+.-     ..|..+-...+...-.-....|..|....+.++.....
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L-----~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~   75 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL-----ARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPL   75 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc-----HHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCc
Confidence            4667777766666666666777777766666653322     11111111110000000112588888777776655544

Note: this model has been restricted to the amino half because for technical reasons.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.64  E-value=0.016  Score=32.49  Aligned_cols=19  Identities=32%  Similarity=0.529  Sum_probs=9.6

Q ss_pred             CCEEEccCCccccccCcccc
Q 041867          112 LQELYIGSNDLRGSLPWCMT  131 (776)
Q Consensus       112 L~~L~Ls~n~l~~~~~~~~~  131 (776)
                      |++|+|++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3444344

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.64  E-value=0.014  Score=32.80  Aligned_cols=11  Identities=64%  Similarity=0.791  Sum_probs=4.3

Q ss_pred             CEEECcCCccC
Q 041867          630 ESLDLSNNKLN  640 (776)
Q Consensus       630 ~~L~Ls~N~l~  640 (776)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.57  E-value=0.001  Score=71.73  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             CCCcEEEccCCCCcCcCC----CCCCCCCCcCEEEceeccCc
Q 041867          261 TKLRQLSLVNDSLGGPFR----LPIHSHKRLGMLDISNNNFR  298 (776)
Q Consensus       261 ~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~ls~n~l~  298 (776)
                      +.+++++++.|.+++...    ..+..++.++.+.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            344566666666654332    22344567777777777665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.01  E-value=0.0014  Score=70.72  Aligned_cols=191  Identities=24%  Similarity=0.201  Sum_probs=124.2

Q ss_pred             CcEEECCCCCCCCccchh---ccCCCCCCCEEeCCCCcCccccC---CCcCCCC-CCCcEEeCCCCccccCc--chhHHH
Q 041867            7 LEYLTLHGSSLHISLLQS---IASIFPSLKNLSISYCEVNGVVH---GQGFPHF-KSLEHLGMMSTRIALNT--NFLQVI   77 (776)
Q Consensus         7 L~~L~L~~n~~~~~~~~~---~~~~~~~L~~L~Ls~n~~~~~~~---~~~~~~l-~~L~~L~l~~~~i~~~~--~~~~~~   77 (776)
                      +..|.|.+|.+.+.....   .+...+.|..|++++|.+.+.-.   ...+... ..+++|++..|.+...+  .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677888888887543221   15567889999999998862210   0123333 56777888888333222  233444


Q ss_pred             HhcCCCccEEEccCCCCCCCCCCcCCcCCCC----CCCCCEEEccCCccccc----cCccccCCCC-CCEEeCCCCcCcc
Q 041867           78 SESMPSLKYLSLSYSTLGTNSSRILDRGLCS----PVHLQELYIGSNDLRGS----LPWCMTNLTS-LRILDVSSNQLTG  148 (776)
Q Consensus        78 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~  148 (776)
                      . ....++.++++.|.+...+.......+..    ..++++|.+++|.++..    ....+...+. ++.|++..|.+.+
T Consensus       169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            5 47889999999998865444444445543    66899999999988732    2234555566 7779999998763


Q ss_pred             c----CCcccccCC-CCCCEEeccCCccccc---cCcccccCCCCCcEEEcccCccccc
Q 041867          149 S----ISSSPLIHL-TSIEKLYLSNNHFQIP---ISLEPLFNHSRLKTFYADNNELNAE  199 (776)
Q Consensus       149 ~----i~~~~~~~l-~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~l~~n~~~~~  199 (776)
                      .    ..+ .+..+ ..+++++++.|.++..   .....+..++.++.+.+..|.+...
T Consensus       248 ~g~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  248 VGVEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            3    122 34455 6789999999988721   1223356677899999999987653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.89  E-value=0.11  Score=30.51  Aligned_cols=13  Identities=54%  Similarity=0.833  Sum_probs=5.9

Q ss_pred             CCCEEECcCCccC
Q 041867          628 HVESLDLSNNKLN  640 (776)
Q Consensus       628 ~L~~L~Ls~N~l~  640 (776)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.89  E-value=0.11  Score=30.51  Aligned_cols=13  Identities=54%  Similarity=0.833  Sum_probs=5.9

Q ss_pred             CCCEEECcCCccC
Q 041867          628 HVESLDLSNNKLN  640 (776)
Q Consensus       628 ~L~~L~Ls~N~l~  640 (776)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.25  E-value=0.17  Score=29.65  Aligned_cols=18  Identities=39%  Similarity=0.639  Sum_probs=8.6

Q ss_pred             ccCCeeecccccccccCc
Q 041867          603 TRIQTLNLSHNDLIGLIP  620 (776)
Q Consensus       603 ~~L~~L~Ls~N~l~~~~~  620 (776)
                      ++|+.|+|++|+|+.+++
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555544433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.25  E-value=0.17  Score=29.65  Aligned_cols=18  Identities=39%  Similarity=0.639  Sum_probs=8.6

Q ss_pred             ccCCeeecccccccccCc
Q 041867          603 TRIQTLNLSHNDLIGLIP  620 (776)
Q Consensus       603 ~~L~~L~Ls~N~l~~~~~  620 (776)
                      ++|+.|+|++|+|+.+++
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            344555555555544433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.60  E-value=0.0099  Score=55.33  Aligned_cols=83  Identities=19%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      ...+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+.++..+..+++.+|..+ ..|.++...+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            36788999999987 45567888999999999999998 56788899999999999999997 78889999999999999


Q ss_pred             ccccCc
Q 041867          659 AYNNLS  664 (776)
Q Consensus       659 ~~N~l~  664 (776)
                      -+|++.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999976

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.23  E-value=0.21  Score=25.92  Aligned_cols=13  Identities=69%  Similarity=0.805  Sum_probs=5.8

Q ss_pred             CCCEEEccCCcCC
Q 041867          335 FLQILDLSNNHLT  347 (776)
Q Consensus       335 ~L~~L~l~~n~l~  347 (776)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.54  E-value=0.0097  Score=55.38  Aligned_cols=93  Identities=24%  Similarity=0.283  Sum_probs=77.0

Q ss_pred             CCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCc
Q 041867          591 LIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  670 (776)
Q Consensus       591 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~  670 (776)
                      ++.+.-..+......+.||++.|++... -..|+-++.|..||++.|++. ..|..+..+..+..+++.+|..+ ..|..
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence            3334445677788999999999998744 456888899999999999998 78888888888999999999998 56777


Q ss_pred             cccccccCcccccCCC
Q 041867          671 TAQFATFNESSYEGNT  686 (776)
Q Consensus       671 ~~~~~~l~~~~~~~n~  686 (776)
                      +.+.+..+..+.-+||
T Consensus       107 ~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTE  122 (326)
T ss_pred             ccccCCcchhhhccCc
Confidence            8889888888888775

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.71  E-value=0.085  Score=48.43  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             CCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCC-CCCCCCCcCCcCCCCC
Q 041867           31 SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYST-LGTNSSRILDRGLCSP  109 (776)
Q Consensus        31 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~l  109 (776)
                      .++.+|=+++.|...-- ..+..++.++.|.+.+|+ .+...-.+.+..-.++|+.|++++|. |++   .-. ..+.++
T Consensus       102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck-~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL-~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCK-YFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGL-ACLLKL  175 (221)
T ss_pred             eEEEEecCCchHHHHHH-HHHhccchhhhheecccc-chhhHHHHHhcccccchheeeccCCCeech---hHH-HHHHHh
Confidence            35556666666543211 245666777777777773 33333334444345788888888775 333   111 134556


Q ss_pred             CCCCEEEccCC
Q 041867          110 VHLQELYIGSN  120 (776)
Q Consensus       110 ~~L~~L~Ls~n  120 (776)
                      ++|+.|.+.+=
T Consensus       176 knLr~L~l~~l  186 (221)
T KOG3864|consen  176 KNLRRLHLYDL  186 (221)
T ss_pred             hhhHHHHhcCc
Confidence            67777766653

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=86.52  E-value=4.1  Score=42.82  Aligned_cols=19  Identities=16%  Similarity=0.134  Sum_probs=11.7

Q ss_pred             CCCCEEeCCCCcCccccCC
Q 041867           30 PSLKNLSISYCEVNGVVHG   48 (776)
Q Consensus        30 ~~L~~L~Ls~n~~~~~~~~   48 (776)
                      +.+++++++.|.+...+|.
T Consensus       165 pr~r~~dls~npi~dkvpi  183 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPI  183 (553)
T ss_pred             chhhhhccCCCcccccCCc
Confidence            4566777777766555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.71  E-value=0.18  Score=28.85  Aligned_cols=15  Identities=20%  Similarity=0.395  Sum_probs=6.7

Q ss_pred             CCCCEEEccCCcccc
Q 041867          110 VHLQELYIGSNDLRG  124 (776)
Q Consensus       110 ~~L~~L~Ls~n~l~~  124 (776)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.59  E-value=0.34  Score=44.69  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=55.2

Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      ..++.++-++..|..+.-+.+.++++++.|.+.+|.-.+.       .-|+.                       .-   
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD-------~~L~~-----------------------l~---  147 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD-------WCLER-----------------------LG---  147 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh-------HHHHH-----------------------hc---
Confidence            4577888888888777667777888888887777653210       00000                       00   


Q ss_pred             hccCccCCEEEcccc-cCCccchhhhcCCCCCCEEeCCCC
Q 041867          474 VDGLSQLSHLILGHN-NLEGEVLVQLCELNQLQLLDLSNN  512 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n  512 (776)
                       ...++|+.|++++| .|++.....+..+++|+.|.+.+=
T Consensus       148 -~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  148 -GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             -ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence             12467888888877 577666667777788888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	776
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 171/618 (27%), Positives = 272/618 (44%), Gaps = 55/618 (8%)
Query: 112 LQELYIGSNDLRGS--LPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           L+ L + +N + G+  + W +++    L+ L +S N+++G +  S  ++L   E L +S+
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSS 206
Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           N+F   I    L + S L+      N+L+ + +++ S      +L  L++SS    G   
Sbjct: 207 NNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT---ELKLLNISSNQFVGPIP 261
Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
           P  L     L+ + L+  K  GE P +L      L  L L  +   G       S   L 
Sbjct: 262 PLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF-LQILDLSNNHLT 347
            L +S+NNF G +P++    +  L + + S N   G +P SL N+   L  LDLS+N+ +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 348 GEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
           G I  +L                  + LYL NN  +GKIP  L N + L  + +  N+L 
Sbjct: 379 GPILPNLC----------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 408 GPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR------- 459
           G IP                N + G +P    +  +++ + L  N L G++         
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 460 ----DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXH 515
                LS NRL G IP W+  L  L+ L L +N+  G +                    +
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 516 GPIPPC-FDNTTLYES---------YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFT 565
           G IP   F  +    +         Y  +  + ++     ++   QG   +Q++ +    
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 566 TKNIV-YIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
             NI   +Y G              LD+S N L G IP +IG++  +  LNL HND+ G 
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
           IP    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF 
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 727
Query: 679 ESSYEGNTFLCGLPLPIC 696
            + +  N  LCG PLP C
Sbjct: 728 PAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 141/557 (25%), Positives = 221/557 (39%), Gaps = 73/557 (13%)
Query: 164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYE 223
           L+LSN+H  I  S+      + L +     N L+  +T   SL + +  L  L++SS   
Sbjct: 79  LFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS-GLKFLNVSSNTL 135
Query: 224 DGVTFPKFL---YHQHDLETVELSHIKMNGE-FPTWLLENNT-KLRQLSLVNDSLGGPFR 278
           D   FP  +      + LE ++LS   ++G     W+L +   +L+ L++  + + G   
Sbjct: 136 D---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--D 190
Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338
           + +     L  LD+S+NNF   IP  +GD   +L   + S N L G    ++     L++
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 339 LDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWL-GNLTWLQ 397
           L++S+N   G IP                     + L L  N  +G+IP +L G    L 
Sbjct: 249 LNISSNQFVGPIPP--------------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 398 YIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
            + +  NH  G +P  F           S NN SG LP            L K  + G  
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP---------MDTLLK--MRGLK 343
Query: 458 KRDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNLEGEV--XXXXXXXXXXXXXXXXXXXX 514
             DLS+N  +G +P+ +  LS  L  L L  NN  G +                      
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
            G IPP   N +            E   +  S     G +   +                
Sbjct: 404 TGKIPPTLSNCS------------ELVSLHLSFNYLSGTIPSSLGS-------------- 437
Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
              LS L  L L  N L G IP ++  +  ++TL L  NDL G IPS  SN  ++  + L
Sbjct: 438 ---LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 694
           SNN+L G+IP  +  L+ L +  ++ N+ SG IP       +        N F   +P  
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 695 ICRSPATMSEASIGNER 711
           + +    ++   I  +R
Sbjct: 555 MFKQSGKIAANFIAGKR 571

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 171/618 (27%), Positives = 272/618 (44%), Gaps = 55/618 (8%)
Query: 112 LQELYIGSNDLRGS--LPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           L+ L + +N + G+  + W +++    L+ L +S N+++G +  S  ++L   E L +S+
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSS 209
Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           N+F   I    L + S L+      N+L+ + +++ S      +L  L++SS    G   
Sbjct: 210 NNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCT---ELKLLNISSNQFVGPIP 264
Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
           P  L     L+ + L+  K  GE P +L      L  L L  +   G       S   L 
Sbjct: 265 PLPL---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF-LQILDLSNNHLT 347
            L +S+NNF G +P++    +  L + + S N   G +P SL N+   L  LDLS+N+ +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 348 GEIPEHLAVGCVXXXXXXXXXXXXXEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
           G I  +L                  + LYL NN  +GKIP  L N + L  + +  N+L 
Sbjct: 382 GPILPNLC----------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 408 GPIPVEFCXXXXXXXXXXSDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR------- 459
           G IP                N + G +P    +  +++ + L  N L G++         
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 460 ----DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVXXXXXXXXXXXXXXXXXXXXH 515
                LS NRL G IP W+  L  L+ L L +N+  G +                    +
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 516 GPIPPC-FDNTTLYES---------YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFT 565
           G IP   F  +    +         Y  +  + ++     ++   QG   +Q++ +    
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 566 TKNIV-YIYQGKVLSLLSG------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
             NI   +Y G              LD+S N L G IP +IG++  +  LNL HND+ G 
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
           IP    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF 
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 730
Query: 679 ESSYEGNTFLCGLPLPIC 696
            + +  N  LCG PLP C
Sbjct: 731 PAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 203/510 (39%), Gaps = 95/510 (18%)
Query: 204 HSLTAPNFQLSRLSLSSGYE------DGVTFPKFL---YHQHDLETVELSHIKMNGE-FP 253
           +SL+ P   L+ L   SG +      + + FP  +      + LE ++LS   ++G    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 254 TWLLENNT-KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSL 312
            W+L +   +L+ L++  + + G   + +     L  LD+S+NNF   IP  +GD   +L
Sbjct: 170 GWVLSDGCGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SAL 225
Query: 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXX 372
              + S N L G    ++     L++L++S+N   G IP                     
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--------------LPLKSL 271
Query: 373 EGLYLNNNSLSGKIPRWL-GNLTWLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS 431
           + L L  N  +G+IP +L G    L  + +  NH  G +P  F           S NN S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 432 GSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNL 490
           G LP            L K  + G    DLS+N  +G +P+ +  LS  L  L L  NN 
Sbjct: 332 GELP---------MDTLLK--MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 491 EGEVXXXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
                                    GPI P      L ++  N+       E++      
Sbjct: 381 S------------------------GPILP-----NLCQNPKNTLQ-----ELYLQNNGF 406
Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610
            G +   +    E  +                 L LS N L G IP  +G+L++++ L L
Sbjct: 407 TGKIPPTLSNCSELVS-----------------LHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
             N L G IP     +K +E+L L  N L G+IP  L     L   S++ N L+GEIP+W
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 671 TAQFATFNESSYEGNTFLCGLP--LPICRS 698
             +           N+F   +P  L  CRS
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRS 539

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 37/147 (25%)
Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSN-LKHVESLDLSNNKLNGK 642
           L++S N+ +GPIPP    L  +Q L+L+ N   G IP   S     +  LDLS N   G 
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 643 IP-------------------------HQLVELKTLEVFSVAYNNLSGEIPE----WTAQ 673
           +P                           L++++ L+V  +++N  SGE+PE     +A 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 674 FATFNESSYEGNTFLCGLPLP-ICRSP 699
             T + SS   N F  G  LP +C++P
Sbjct: 370 LLTLDLSS---NNF-SGPILPNLCQNP 392

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 133/334 (39%), Gaps = 87/334 (26%)
Query: 377 LNNNSLSG-------KIPRWLGNLTWLQYIIMPN-NHLEGPIPVEFCXXXXXXXXXXSDN 428
           +NN  LSG        IP  L NL +L ++ +   N+L GPIP              +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 429 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN 488
           N+SG++P       IK +          +  D SYN L+G++P  +  L  L  +    N
Sbjct: 112 NVSGAIPDFLS--QIKTL----------VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 489 NLEGEVXXXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
            +                         G IP         +SY + S L      F S+ 
Sbjct: 160 RIS------------------------GAIP---------DSYGSFSKL------FTSMT 180
Query: 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608
             +  +  +I     F   N+ ++            DLS N L G      G+    Q +
Sbjct: 181 ISRNRLTGKIPP--TFANLNLAFV------------DLSRNMLEGDASVLFGSDKNTQKI 226
Query: 609 NLSHNDL------IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
           +L+ N L      +GL        K++  LDL NN++ G +P  L +LK L   +V++NN
Sbjct: 227 HLAKNSLAFDLGKVGLS-------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 663 LSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 696
           L GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 280 LCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 603 TRIQTLNLSHNDLIGL-------IPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLE 654
           T  QT  +++ DL GL       IPS+ +NL ++  L +   N L G IP  + +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN 714
              + + N+SG IP++ +Q  T     +  N     LP  I   P  +     GN     
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 715 LIDMDSFFITFTTSYVI 731
           + D    F    TS  I
Sbjct: 165 IPDSYGSFSKLFTSMTI 181

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 108 SPVHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
           S ++L+ELY+GSN L G+LP     +LT L +LD+ +NQLT  + S+    L  +++L++
Sbjct: 62  SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 167 SNNHF-QIPISLEPLFNHSRLKTFYADNNELNA 198
             N   ++P  +E L   + L     D N+L +
Sbjct: 120 CCNKLTELPRGIERL---THLTHLALDQNQLKS 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-123
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  387 bits (996), Expect = e-123
 Identities = 177/722 (24%), Positives = 289/722 (40%), Gaps = 121/722 (16%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L + + L++L +  ++L      S      SL+ L +S   ++G                
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV--------- 172

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                           +S+    LK+L++S + +   S  +    +   V+L+ L + SN
Sbjct: 173 ----------------LSDGCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSN 210

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
           +    +P+ + + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F  PI   P 
Sbjct: 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PP 265

Query: 181 FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240
                L+      N+   EI    S       L+ L LS  +  G   P F      LE+
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYG-AVPPFFGSCSLLES 322

Query: 241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGH 300
           + LS    +GE P   L     L+ L L                        S N F G 
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDL------------------------SFNEFSGE 358

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN--MKFLQILDLSNNHLTGEIPEHLAVGC 358
           +P  + ++  SL   + S N   G I  +L       LQ L L NN  TG+IP  L+  C
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NC 417

Query: 359 VNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD 418
             L SL LS N            LSG IP  LG+L+ L+ + +  N LEG IP E   + 
Sbjct: 418 SELVSLHLSFNY-----------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGL 477
            L+ L +  N+++G +PS     +              L    LS NRL G IP W+  L
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCT-------------NLNWISLSNNRLTGEIPKWIGRL 513

Query: 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSL 537
             L+ L L +N+  G +  +L +   L  LDL+ N  +G IP      +   + +  +  
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG- 572

Query: 538 DEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPP 597
               + +  I++     E                      LS  +  +++     G   P
Sbjct: 573 ----KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTSP 626

Query: 598 QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 657
              N   +  L++S+N L G IP    ++ ++  L+L +N ++G IP ++ +L+ L +  
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

Query: 658 VAYNNLSGEIPE-----------------------WTAQFATFNESSYEGNTFLCGLPLP 694
           ++ N L G IP+                          QF TF  + +  N  LCG PLP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746

Query: 695 IC 696
            C
Sbjct: 747 RC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  326 bits (838), Expect = e-100
 Identities = 155/616 (25%), Positives = 247/616 (40%), Gaps = 104/616 (16%)

Query: 80  SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMT--NLTSLR 137
           S+  L+ L LS S +   +  +      +   L  L +  N L G +    +  + + L+
Sbjct: 75  SLTGLESLFLSNSHI---NGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 138 ILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF--QIPISLEPLFNHSRLKTFYADNNE 195
            L+VSSN L      S  + L S+E L LS N       +          LK      N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 196 LNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTW 255
           ++ ++  S         L  L +SS        P FL     L+ +++S  K++G+F   
Sbjct: 190 ISGDVDVSR-CV----NLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRA 242

Query: 256 LLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLF 315
           +    T+L+ L++ ++   GP  +P    K L  L ++ N F G IP  +     +L   
Sbjct: 243 IS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 316 NNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGL 375
           + S N   G++P   G+   L+ L LS+N+ +GE+P    +    L+ L LS N      
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE----- 354

Query: 376 YLNNNSLSGKIPRWLGNLTW-LQYIIMPNNHLEGPIPVEFCQLDL--LQILDISDNNISG 432
                  SG++P  L NL+  L  + + +N+  GPI    CQ     LQ L + +N  +G
Sbjct: 355 ------FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 433 SLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
            +P      S             +L    LS+N L+G+IP  +  LS+L  L L  N LE
Sbjct: 409 KIPPTLSNCS-------------ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 492 GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ 551
           GE+  +L  +  L+ L L  N+L G IP    N                           
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSN--------------------------- 488

Query: 552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLS 611
                                      + L+ + LS N+L G IP  IG L  +  L LS
Sbjct: 489 --------------------------CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 612 HNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 671
           +N   G IP+   + + +  LDL+ N  NG IP  + +        +A N ++G+   + 
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYI 578

Query: 672 AQFATFNESSYEGNTF 687
                  E    GN  
Sbjct: 579 KNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  319 bits (819), Expect = 1e-97
 Identities = 156/675 (23%), Positives = 241/675 (35%), Gaps = 127/675 (18%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVV-HGQGFPHFKSLEH 59
           L + T LE L L  S ++ S+  S      SL +L +S   ++G V           L+ 
Sbjct: 73  LLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 60  LGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTL-GTNSSRILDRGLCSPVHLQELYIG 118
           L + S    L+          + SL+ L LS +++ G N    +    C    L+ L I 
Sbjct: 131 LNVSSNT--LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG--ELKHLAIS 186

Query: 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLE 178
            N + G +   ++   +L  LDVSSN  +  I    L   ++++ L +S N      S  
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA 242

Query: 179 PLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL 238
            +   + LK     +N+    I        P   L                        L
Sbjct: 243 -ISTCTELKLLNISSNQFVGPI--------PPLPLKS----------------------L 271

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR 298
           + + L+  K  GE P +L      L  L L  +   G       S   L  L +S+NNF 
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 299 GHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF-LQILDLSNNHLTGEIPEHLAVG 357
           G +P++    +  L + + S N   G +P SL N+   L  LDLS+N+ +G I  +L   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL--- 388

Query: 358 CVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
                      N LQE LYL NN  +GKIP  L N + L  + +  N+L G IP     L
Sbjct: 389 ------CQNPKNTLQE-LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 418 DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDG 476
             L+ L +  N + G +P     +               L+   L +N L G IP  +  
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVK-------------TLETLILDFNDLTGEIPSGLSN 488

Query: 477 LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS 536
            + L+ + L +N L GE+   +  L  L +L LSNN+  G IP    +            
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD------------ 536

Query: 537 LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP 596
                                                       L  LDL+ N   G IP
Sbjct: 537 -----------------------------------------CRSLIWLDLNTNLFNGTIP 555

Query: 597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN--KLNGKIPHQLVELKTLE 654
             +       +  ++ N + G       N    +    + N  +  G    QL  L T  
Sbjct: 556 AAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 655 VFSVAYNNLSGEIPE 669
             ++      G    
Sbjct: 612 PCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  318 bits (816), Expect = 3e-97
 Identities = 141/592 (23%), Positives = 234/592 (39%), Gaps = 125/592 (21%)

Query: 107 CSPVHLQELYIGSNDLR---GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK 163
           C    +  + + S  L     ++   + +LT L  L +S++ + GS+S        S+  
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTS 104

Query: 164 LYLSNNHF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSG 221
           L LS N     +      L + S LK     +N L+     S  L   +           
Sbjct: 105 LDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS----------- 152

Query: 222 YEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFRL 279
                           LE ++LS   ++G      + ++   +L+ L++  + + G   +
Sbjct: 153 ----------------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V 194

Query: 280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQIL 339
            +     L  LD+S+NNF   IP  +GD   +L   + S N L G    ++     L++L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 340 DLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ--------------EGLYLNNNSLSGK 385
           ++S+N   G IP        +LQ L+L+ N                  GL L+ N   G 
Sbjct: 253 NISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 386 IPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIK 444
           +P + G+ + L+ + + +N+  G +P++   ++  L++LD+S N  SG LP     LS  
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWV--DGLSQLSHLILGHNNLEGEVLVQLCELN 502
            + L           DLS N  +G I   +  +  + L  L L +N   G++   L   +
Sbjct: 370 LLTL-----------DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 503 QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIF 562
           +L  L LS N L G IP    +                                      
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGS-------------------------------------- 440

Query: 563 EFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST 622
                          LS L  L L  N L G IP ++  +  ++TL L  NDL G IPS 
Sbjct: 441 ---------------LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 674
            SN  ++  + LSNN+L G+IP  +  L+ L +  ++ N+ SG IP      
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  233 bits (597), Expect = 7e-67
 Identities = 128/719 (17%), Positives = 237/719 (32%), Gaps = 125/719 (17%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
             + E        L     Q    +  ++  L++++ ++  +     F  +  L  L   
Sbjct: 3   TVSHEVADCSHLKLT----QVPDDLPTNITVLNLTHNQLRRLPAAN-FTRYSQLTSL--- 54

Query: 64  STRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
                +  N +  +       +P LK L+L ++ L    S++ D+      +L EL++ S
Sbjct: 55  ----DVGFNTISKLEPELCQKLPMLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMS 106

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLE 178
           N ++           +L  LD+S N L+ +   +  + L ++++L LSNN  Q +     
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEEL 165

Query: 179 PLFNHSRLKTFYADNNELNAEITQS-HSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHD 237
            +F +S LK     +N++        H++     +L  L L++         K      +
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIG----RLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 238 --LETVELSHIKMNGEFPTWLLE-NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISN 294
             +  + LS+ +++    T  L    T L  L L  ++L            +L    +  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 295 NNFRGHIPIEIGDV--LPSLYLFNN------SMNALDGSIPSSLGNMKFLQILDLSNNHL 346
           NN +      +  +  +  L L  +      S+ +L      S   +K L+ L++ +N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 347 TGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL 406
            G        G +NL+ L+LSN+       L N +            + L  + +  N +
Sbjct: 342 PGIKSNMFT-GLINLKYLSLSNSFTS-LRTLTNETFVS------LAHSPLHILNLTKNKI 393

Query: 407 EGPIPVEFCQLDLLQILDISDNNISGSLP-SCFHPLSIKQVHLSKNMLHGQLKR-DLSYN 464
                  F  L  L++LD+  N I   L    +  L               +    LSYN
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-------------NIFEIYLSYN 440

Query: 465 RLNGSIPDWVDGLSQLSHLILGHNNLEG--EVLVQLCELNQLQLLDLSNNNLHGPIPPCF 522
           +      +    +  L  L+L    L+           L  L +LDLSNNN+        
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 523 DNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLS 582
           +                                                      L  L 
Sbjct: 501 EG-----------------------------------------------------LEKLE 507

Query: 583 GLDLSCNKL--------IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
            LDL  N L         G     +  L+ +  LNL  N    +    F +L  ++ +DL
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY-EGNTFLCGLP 692
             N LN           +L+  ++  N ++    +                N F C   
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 8e-22
 Identities = 63/363 (17%), Positives = 135/363 (37%), Gaps = 25/363 (6%)

Query: 1   LHNFTNLEYLTLHGSSLHISL-LQSIASI-------FPSLKNLSISYCEVNGVVHGQGFP 52
           LH   N+ YL L  S    S+ L S+  I          L++L++   ++ G+     F 
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFT 350

Query: 53  HFKSLEHLGMMSTRIALNT-NFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVH 111
              +L++L + ++  +L T      +S +   L  L+L+ + +    S+I         H
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI----SKIESDAFSWLGH 406

Query: 112 LQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           L+ L +G N++   L       L ++  + +S N+      +S    + S+++L L    
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-FALVPSLQRLMLRRVA 465

Query: 171 FQ-IPISLEPLFNHSRLKTFYADNNEL----NAEITQSHSLTAPNFQLSRLSLSSGYEDG 225
            + +  S  P      L      NN +    +  +     L   + Q + L+    + + 
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525

Query: 226 VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHK 285
                FL     L  + L     +   P  + ++  +L+ + L  ++L        ++  
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
            L  L++  N          G    +L   +   N  D +  S      F+  ++ ++ +
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW---FVNWINETHTN 641

Query: 346 LTG 348
           +  
Sbjct: 642 IPE 644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (519), Expect = 1e-59
 Identities = 79/342 (23%), Positives = 127/342 (37%), Gaps = 62/342 (18%)

Query: 365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG--PIPVEFCQLDLLQI 422
            LS+          N +  G +         +  + +   +L    PIP     L  L  
Sbjct: 23  TLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80

Query: 423 LDISD-NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR----DLSYNRLNGSIPDWVDGL 477
           L I   NN+ G +P                    +L +     +++  ++G+IPD++  +
Sbjct: 81  LYIGGINNLVGPIPPAI----------------AKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSL 537
             L  L   +N L G +   +  L  L  +    N + G IP  +          + S L
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY---------GSFSKL 175

Query: 538 DEQFEI---FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594
                I     + + P                              L+ +DLS N L G 
Sbjct: 176 FTSMTISRNRLTGKIPP--------TFANLN---------------LAFVDLSRNMLEGD 212

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
                G+    Q ++L+ N L   +       K++  LDL NN++ G +P  L +LK L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 696
             +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  187 bits (477), Expect = 1e-53
 Identities = 78/339 (23%), Positives = 124/339 (36%), Gaps = 85/339 (25%)

Query: 280 PIHSHKRLGMLDISNNNFRG--HIPIEIGDVLPSL-YLFNNSMNALDGSIPSSLGNMKFL 336
                 R+  LD+S  N      IP  + + LP L +L+   +N L G IP ++  +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL 396
             L +++ +++G IP+ L+     +++L          L  + N+LSG +P  + +L  L
Sbjct: 104 HYLYITHTNVSGAIPDFLS----QIKTL--------VTLDFSYNALSGTLPPSISSLPNL 151

Query: 397 QYIIMPNNHLEGPIPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 455
             I    N + G IP  +     L   + IS N ++G +P  F  L++  V         
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV--------- 202

Query: 456 QLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
               DLS N L G              + L  N+L  + L ++     L  LDL NN ++
Sbjct: 203 ----DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIY 257

Query: 516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575
           G +P                                                        
Sbjct: 258 GTLPQGLTQ--------------------------------------------------- 266

Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND 614
             L  L  L++S N L G I PQ GNL R      ++N 
Sbjct: 267 --LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (457), Expect = 6e-51
 Identities = 72/282 (25%), Positives = 115/282 (40%), Gaps = 36/282 (12%)

Query: 259 NNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISN-NNFRGHIPIEIGDVLPSLYLF 315
              ++  L L   +L  P+ +P  + +   L  L I   NN  G IP  I   L  L+  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYL 106

Query: 316 NNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN----- 370
             +   + G+IP  L  +K L  LD S N L+G +P  ++    NL  +    N      
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAI 165

Query: 371 ---------LQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421
                    L   + ++ N L+GKIP    NL  L ++ +  N LEG   V F      Q
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 422 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLS 481
            + ++ N+++  L       ++  +             DL  NR+ G++P  +  L  L 
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGL-------------DLRNNRIYGTLPQGLTQLKFLH 271

Query: 482 HLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH--GPIPPC 521
            L +  NNL GE+  Q   L +  +   +NN      P+P C
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (371), Expect = 4e-39
 Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 55/325 (16%)

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLI-HLTSIEKLYLSN-NHF--QIPI 175
               G L    T    +  LD+S   L         + +L  +  LY+   N+    IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 176 SLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ 235
           +   +   ++L   Y  +  ++  I        P+F LS++                   
Sbjct: 96  A---IAKLTQLHYLYITHTNVSGAI--------PDF-LSQIK------------------ 125

Query: 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG-MLDISN 294
             L T++ S+  ++G  P   + +   L  ++   + + G       S  +L   + IS 
Sbjct: 126 -TLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 295 NNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHL 354
           N   G IP    ++  +L   + S N L+G      G+ K  Q + L+ N L  ++ +  
Sbjct: 184 NRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-- 239

Query: 355 AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF 414
                NL  L L NN            + G +P+ L  L +L  + +  N+L G IP   
Sbjct: 240 VGLSKNLNGLDLRNNR-----------IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 415 CQLDLLQILDISDNNI--SGSLPSC 437
             L    +   ++N       LP+C
Sbjct: 289 -NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (310), Expect = 6e-31
 Identities = 64/296 (21%), Positives = 112/296 (37%), Gaps = 46/296 (15%)

Query: 80  SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI-GSNDLRGSLPWCMTNLTSLRI 138
               +  L LS   L       +   L +  +L  LYI G N+L G +P  +  LT L  
Sbjct: 48  QTYRVNNLDLSGLNL--PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF--QIPISLEPLFNHSRLKTFYADNNEL 196
           L ++   ++G+I    L  + ++  L  S N     +P S+    +   L     D N +
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRI 161

Query: 197 NAEITQSHSLTAPN--FQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPT 254
           +  I        P+     S+L               +          +S  ++ G+ P 
Sbjct: 162 SGAI--------PDSYGSFSKLF------------TSMT---------ISRNRLTGKIPP 192

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
                N  L  + L  + L G   +   S K    + ++ N+    +  ++G    +L  
Sbjct: 193 TF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNG 248

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            +   N + G++P  L  +KFL  L++S N+L GEIP+            A +NN 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 26/203 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L     L  L    ++L  +L  SI+S  P+L  ++     ++G +     P   S    
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAI-----P--DSYGSF 172

Query: 61  GMMSTRIALNTNFLQVISESMP------SLKYLSLSYSTL-GTNSSRILDRGLCSPVHLQ 113
             + T + ++ N L   +  +P      +L ++ LS + L G  S      G     + Q
Sbjct: 173 SKLFTSMTISRNRL---TGKIPPTFANLNLAFVDLSRNMLEGDASVLF---GSDK--NTQ 224

Query: 114 ELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQI 173
           ++++  N L   L   +    +L  LD+ +N++ G++    L  L  +  L +S N+   
Sbjct: 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCG 282

Query: 174 PISLEPLFNHSRLKTFYADNNEL 196
            I          + + YA+N  L
Sbjct: 283 EIPQGGNLQRFDV-SAYANNKCL 304

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 595 IPPQIGNLTRIQ----TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG--KIPHQLV 648
           I   +GN T +     T +  +   +G++  T +    V +LDLS   L     IP  L 
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 649 ELKTLEVFSVA-YNNLSGEIPE 669
            L  L    +   NNL G IP 
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPP 95

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  210 bits (537), Expect = 4e-59
 Identities = 114/674 (16%), Positives = 202/674 (29%), Gaps = 120/674 (17%)

Query: 17  LHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQV 76
           + ++  +   ++  S KNL +S+  +  +     F  F  L+ L        L+   +Q 
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVL-------DLSRCEIQT 66

Query: 77  ISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTN 132
           I +     +  L  L L+ + +      +          LQ+L     +L     + + +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 133 LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLEPLFNHSRLKTFY 190
           L +L+ L+V+ N +          +LT++E L LS+N  Q      L  L     +    
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---MPLLN 179

Query: 191 ADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
              +     +           +L +L+L + ++        +     LE   L   +   
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 251 EFPTWLLENNT--KLRQLSL------VNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIP 302
           E      + +    L  L++        D          +    +    + +        
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 303 IEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 362
                    L L N            S      L+ L  ++N       E   V   +L+
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLE 350

Query: 363 SLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQI 422
            L LS N L         S  G   +     T L+Y+ +  N +   +   F  L+ L+ 
Sbjct: 351 FLDLSRNGL---------SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400

Query: 423 LDISDNNISGSLP-SCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQL 480
           LD   +N+      S F  L               L   D+S+     +     +GLS L
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLR-------------NLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 481 SHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDE 539
             L +  N+ +   L     EL  L  LDLS   L    P  F++               
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------------- 492

Query: 540 QFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI 599
                                                 LS L  L++S N          
Sbjct: 493 --------------------------------------LSSLQVLNMSHNNFFSLDTFPY 514

Query: 600 GNLTRIQTLNLSHNDLIGLIPSTFSNL-KHVESLDLSNNKLNGKIPHQ--LVELKTLEVF 656
             L  +Q L+ S N ++        +    +  L+L+ N       HQ  L  +K     
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 657 SVAYNNLSGEIPEW 670
            V    +    P  
Sbjct: 575 LVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  184 bits (469), Expect = 6e-50
 Identities = 94/545 (17%), Positives = 176/545 (32%), Gaps = 58/545 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             +F  L+ L L    +      +  S    L  L ++   +  +     F    SL+ L
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 105

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
             + T +    +        + +LK L+++++ +    S  L     +  +L+ L + SN
Sbjct: 106 VAVETNL---ASLENFPIGHLKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHLDLSSN 159

Query: 121 DLRGSLPWCMTNLTSLRI----LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPIS 176
            ++      +  L  + +    LD+S N +      +       + KL L NN   + + 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVM 217

Query: 177 LEPLFNHSRLKTFYADNNELN-----AEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKF 231
              +   + L+       E        +  +S      N  +    L+            
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 232 LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLD 291
                ++ +  L  + +           N   + L LVN   G     P    K L  L 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLT 331

Query: 292 ISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIP 351
            ++N             L  L L  N ++   G    S      L+ LDLS N +     
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK-GCCSQSDFGTTSLKYLDLSFNGVITMSS 390

Query: 352 EHLAVGCVNLQSLALSNNNLQ--------------EGLYLNNNSLSGKIPRWLGNLTWLQ 397
             L  G   L+ L   ++NL+                L +++             L+ L+
Sbjct: 391 NFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 398 YIIMPNNHLEGPI-PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 456
            + M  N  +    P  F +L  L  LD+S   +    P+ F+ LS              
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-------------S 495

Query: 457 LKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNL 514
           L+  ++S+N            L+ L  L    N++      +L    + L  L+L+ N+ 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 515 HGPIP 519
                
Sbjct: 556 ACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (415), Expect = 1e-42
 Identities = 70/507 (13%), Positives = 158/507 (31%), Gaps = 56/507 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           + +   L+ L +  + +    L    S   +L++L +S  ++  +         + L  +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQM 175

Query: 61  GMMSTRIALNTNFLQVISES---MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI 117
            +++  + L+ N +  I         L  L+L  +    N  +   +GL     L+   +
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG---LEVHRL 232

Query: 118 GSNDLRGSL------PWCMTNLTSLRILDVSSNQLTGSISSSPLI--HLTSIEKLYLSNN 169
              + R            +  L +L I +     L   +     +   LT++    L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
             +    ++    +   +     N +   +       +      +     +         
Sbjct: 293 TIE---RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN--------A 340

Query: 230 KFLYHQHDLETVELSHIKMNG-EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
                   LE ++LS   ++     +      T L+ L L  + +       +   + L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-LE 399

Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
            LD  ++N +      +   L +L   + S      +       +  L++L ++ N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG 408
                +     NL             L L+   L    P    +L+ LQ + M +N+   
Sbjct: 460 NFLPDIFTELRNLTF-----------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 409 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNG 468
                +  L+ LQ+LD S N+I  S              L           +L+ N    
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-----------NLTQNDFAC 557

Query: 469 SIP--DWVDGLSQLSHLILGHNNLEGE 493
           +     ++  +     L++    +E  
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECA 584

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (401), Expect = 7e-41
 Identities = 82/421 (19%), Positives = 138/421 (32%), Gaps = 57/421 (13%)

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
                NF   IP  +     +L L   S N L      S  +   LQ+LDLS   +    
Sbjct: 13  QCMELNFY-KIPDNLPFSTKNLDL---SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 351 PEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGNLTWLQ 397
                    +L +L L+ N +Q             + L     +L+      +G+L  L+
Sbjct: 69  DGAYQ-SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 398 YIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 456
            + + +N ++   +P  F  L  L+ LD+S N I     +    L          M    
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH--------QMPLLN 179

Query: 457 LKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-LNQLQLLDLSNN--- 512
           L  DLS N +N   P     +  L  L L +N     V+    + L  L++  L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 513 ---NLHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVE---------KQIH 559
              NL        +    L       + LD   +    + +   NV          +++ 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 560 EIFEFTTKNIVYIYQ-------GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSH 612
           +         + +            L  L  L  + NK          +L  ++ L+LS 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSR 356

Query: 613 NDL--IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
           N L   G    +      ++ LDLS N +   +    + L+ LE     ++NL       
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 671 T 671
            
Sbjct: 416 V 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  151 bits (383), Expect = 1e-38
 Identities = 91/521 (17%), Positives = 164/521 (31%), Gaps = 73/521 (14%)

Query: 157 HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQS-HSLTAPNFQLSR 215
            + +I    +  N ++IP +L         K      N L    + S  S      +L  
Sbjct: 6   VVPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQV 56

Query: 216 LSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG 275
           L LS      +           L T+ L+   +            + L++L  V  +L  
Sbjct: 57  LDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLAS 114

Query: 276 PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF 335
               PI   K L  L++++N  +                           +P    N+  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQS------------------------FKLPEYFSNLTN 150

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
           L+ LDLS+N +       L      L  + L N +    L L+ N ++   P     +  
Sbjct: 151 LEHLDLSSNKIQSIYCTDLR----VLHQMPLLNLS----LDLSLNPMNFIQPGAFKEIR- 201

Query: 396 LQYIIMPNNHLEGPIPVEFCQ-LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
           L  + + NN     +     Q L  L++  +                        K+ L 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEKFDKSALE 252

Query: 455 GQLKRDLSYNRLN------GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLD 508
           G     +   RL         I D  + L+ +S   L    +E   +         Q L+
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLE 310

Query: 509 LSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKN 568
           L N            +       SN            S+E    ++ +         +++
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF--LDLSRNGLSFKGCCSQS 368

Query: 569 IVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLK 627
                     + L  LDLS N +I  +      L +++ L+  H++L  +   S F +L+
Sbjct: 369 D------FGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
           ++  LD+S+             L +LEV  +A N+      
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (532), Expect = 5e-57
 Identities = 82/589 (13%), Positives = 174/589 (29%), Gaps = 73/589 (12%)

Query: 106 LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY 165
           L +   +  L +     +G +P  +  LT L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNA--EITQSHSLTAPNFQLSRLSLSSGYE 223
              +  ++      L    RL       + +N   E+      +  + + +++   +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 224 DGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHS 283
             +   K +     L+ +  ++     +               +           L   +
Sbjct: 438 TFI--SKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSN 489

Query: 284 HKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALD------GSIPSSLGNMKF 335
            K L  +++ N      +P  + D+  L SL +  N   +          +         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSG 384
           +QI  +  N+L            V L  L   +N ++             L L+ N +  
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 443
               +      ++ +   +N L+  P       + ++  +D S N I     +    +  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 444 KQ-VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE-------GEVL 495
            + ++ S           LSYN +     +     S +S +IL +N +            
Sbjct: 670 YKGINASTV--------TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 496 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555
                   L  +DL  N L   +   F  TTL         L     +  S      N  
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL-------PYLSN---MDVS-----YN-- 763

Query: 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDL 615
                         +   Q K   +    D   N+++   P  I     +  L +  ND+
Sbjct: 764 -CFSSF----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
             +       L     LD+++N         +       ++ + Y+   
Sbjct: 819 RKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  162 bits (411), Expect = 1e-41
 Identities = 91/550 (16%), Positives = 164/550 (29%), Gaps = 78/550 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +   T L+ L+    S  +   +       +          +          + + L   
Sbjct: 343 IGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            ++   I  N     +  +S  SLK   +   T   N    + + +     LQ +Y  ++
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT---NRITFISKAIQRLTKLQIIYFANS 458

Query: 121 DLRG-------------------SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI 161
                                  +     +NL  L  +++ +      +    L  L  +
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPEL 517

Query: 162 EKLYLSNNHFQIPISL--------EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQL 213
           + L ++ N       L        +      +++ FY   N L  E   S SL     +L
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKL 575

Query: 214 SRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSL 273
             L       + V   +       L  ++L + ++  E P        ++  L   ++ L
Sbjct: 576 GLLDCVH---NKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631

Query: 274 GG-PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN 332
              P      S   +G +D S N         I   +      N                
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGIN---------------- 674

Query: 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN 392
                 + LS N +    P  L      + ++ LSNN +     +  NSL         N
Sbjct: 675 ---ASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS---IPENSLKP-KDGNYKN 726

Query: 393 LTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSK 450
              L  I +  N L           L  L  +D+S N  S S P+     S +K   +  
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 451 NMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLS 510
                   RD   NR+    P  +     L  L +G N++     V      QL +LD++
Sbjct: 786 Q-------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK---VDEKLTPQLYILDIA 835

Query: 511 NNNL-HGPIP 519
           +N      + 
Sbjct: 836 DNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  161 bits (408), Expect = 4e-41
 Identities = 77/556 (13%), Positives = 153/556 (27%), Gaps = 145/556 (26%)

Query: 130 MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189
           + N   +  L ++     G +  + +  LT ++ L    +   +   L      +     
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMS 376

Query: 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN 249
               + +     +          LS L                         E+  IK  
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLL----------------QDAINRNPEMKPIKK- 419

Query: 250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISNNNFRGHIPIEIGD 307
                     + K  Q+  + + +     +   I    +L ++  +N+ F          
Sbjct: 420 ------DSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAV--- 467

Query: 308 VLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS 367
                   N+       +   S  N+K L  ++L N     ++P+ L      LQSL ++
Sbjct: 468 ---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIA 523

Query: 368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDIS 426
            N       L  +    ++         +Q   M  N+LE  P      ++  L +LD  
Sbjct: 524 CNRGISAAQLKADW--TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 427 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILG 486
            N +   L +                                          +L+ L L 
Sbjct: 582 HNKVR-HLEA-------------------------------------FGTNVKLTDLKLD 603

Query: 487 HNNLEGEVLVQLCE-LNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF 545
           +N +E E+    C   +Q++ L  S+N L   IP  F+  ++Y                 
Sbjct: 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV---------------- 645

Query: 546 SIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG-----PIPPQIG 600
                                              +  +D S NK+              
Sbjct: 646 -----------------------------------MGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 601 NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL-------NGKIPHQLVELKTL 653
                 T+ LS+N++       F+    + ++ LSNN +                    L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 654 EVFSVAYNNLSGEIPE 669
               + +N L+  + +
Sbjct: 731 TTIDLRFNKLT-SLSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (384), Expect = 4e-38
 Identities = 66/499 (13%), Positives = 149/499 (29%), Gaps = 58/499 (11%)

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
             + +     ++ S+   +F +    L+      +   +   +  D + ++     ++G 
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDG- 283

Query: 252 FPTWLLENNTKLRQLSLVN-------DSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIE 304
              W   + T    +  +N       D  G    + + ++ R+  L ++    +G +P  
Sbjct: 284 -KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342

Query: 305 IGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSL 364
           IG  L  L + +   ++   S            + +   + +     +        L   
Sbjct: 343 IGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILD 424
            L  +       +N N     I +          I    N +   I     +L  LQI+ 
Sbjct: 402 DLLQD------AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIY 454

Query: 425 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLI 484
            +++  +    +                       +  Y +   +       L  L+ + 
Sbjct: 455 FANSPFTYDNIAVD-----------------WEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 485 LGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544
           L +     ++   L +L +LQ L+++ N          D T L +       +      +
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI---FY 554

Query: 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR 604
                   N  ++                    +  L  LD   NK+        G   +
Sbjct: 555 MG-----YNNLEEFPASASLQK-----------MVKLGLLDCVHNKVR--HLEAFGTNVK 596

Query: 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLEVFSVAYNN 662
           +  L L +N +  +     +    VE L  S+NKL   IP+      +  +     +YN 
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 663 LSGEIPEWTAQFATFNESS 681
           +  E    +     +   +
Sbjct: 656 IGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  150 bits (379), Expect = 2e-37
 Identities = 83/624 (13%), Positives = 172/624 (27%), Gaps = 111/624 (17%)

Query: 63  MSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDL 122
            +  + +  +   V  ++   +  LSL+    G  +   +   +     L+ L  G++  
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLA----GFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 123 RGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFN 182
             S         +  + +   +++        L +   +    L  +       ++P+  
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 183 HSRLKTFYADNNELNAEIT-----------------QSHSLTAPNFQLSRLSLSSGYEDG 225
            SR+         L   IT                  +   T  N  +     +S Y   
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 226 VT-FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSL-------VNDSLGGPF 277
                    +  DL  VEL +     + P +L  +  +L+ L++                
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWT 538

Query: 278 RLP--IHSHKRLGMLDISNNNFRGHIPIEIG-DVLPSLYLFNNSMNALDGSIPSSLGNMK 334
           RL     +  ++ +  +  NN     P       +  L L +   N +      + G   
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNV 595

Query: 335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ--------------EGLYLNNN 380
            L  L L  N +  EIPE        ++ L  S+N L+                +  + N
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 381 SLSGKIPRWLG-----NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP 435
            +  +                  + +  N ++      F     +  + +S+N ++    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 436 SCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPD--WVDGLSQLSHLILGHNNLEG 492
           +   P      +         L   DL +N+L  S+ D      L  LS++ + +N    
Sbjct: 715 NSLKPKDGNYKNTYL------LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 493 -----EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLYESYSNSSSLDEQFEI 543
                    QL         D   N +    P           L    ++   +DE    
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE---- 823

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603
                                           K+   L  LD++ N  I      +    
Sbjct: 824 --------------------------------KLTPQLYILDIADNPNISIDVTSVCPYI 851

Query: 604 RIQTLNLSHNDLIGLIPSTFSNLK 627
                 L ++    +       ++
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGIE 875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (521), Expect = 1e-56
 Identities = 90/621 (14%), Positives = 201/621 (32%), Gaps = 112/621 (18%)

Query: 70  NTNFLQVISES---MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSL 126
                  + ++   +  L+ L+L       N      +G+ + +  ++        + + 
Sbjct: 90  GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 127 PWCMT--NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNH 183
                  + + L    ++S+    SI  S         ++   +N+   +  ++      
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAV---MRL 205

Query: 184 SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243
           ++L+ FY  N+   AE           ++      +  Y+   T      +  DL  VE+
Sbjct: 206 TKLRQFYMGNSPFVAENICE------AWENENSEYAQQYK---TEDLKWDNLKDLTDVEV 256

Query: 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--------IHSHKRLGMLDISNN 295
            +     + PT+L +   +++ +++  +      +L             +++ ++ I  N
Sbjct: 257 YNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 296 NFR-GHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHL 354
           N +   +   +   +  L +     N L+G +P+  G+   L  L+L+ N +T  IP + 
Sbjct: 316 NLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANF 372

Query: 355 AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL--GNLTWLQYIIMPNNHLEG---- 408
                 +++L+ ++N L+             IP      +++ +  I    N +      
Sbjct: 373 CGFTEQVENLSFAHNKLKY------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

Query: 409 ---PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRDLSYN 464
              P+     +   +  +++S+N IS      F     +  ++L  NML    K  L   
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-- 478

Query: 465 RLNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFD 523
                  +       L+ + L  N L       +   L  L  +DLS N+     P    
Sbjct: 479 ----DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP- 532

Query: 524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSG 583
                    NSS+L                                      K   + + 
Sbjct: 533 --------LNSSTL--------------------------------------KGFGIRNQ 546

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
            D   N+ +   P  I     +  L +  ND+  +      N+     LD+ +N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603

Query: 644 PHQLVELKTLEVFSVAYNNLS 664
              +       ++ + Y+   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  200 bits (510), Expect = 3e-55
 Identities = 90/558 (16%), Positives = 180/558 (32%), Gaps = 94/558 (16%)

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
           +   +  L +     +G +  + +  LT +E L L ++  ++   L              
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLF------------- 124

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
                   I+ + S      Q  R+     + D      F     DL    ++       
Sbjct: 125 ----GPKGISANMSDE--QKQKMRMHYQKTFVDYDPREDFS----DLIKDCINSDPQQKS 174

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISNNNFRGHIPIEIGDVL 309
                     K  Q+  +++++     +   +    +L    + N+ F      E  +  
Sbjct: 175 IKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-- 228

Query: 310 PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
                 N+       +      N+K L  +++ N     ++P  L      +Q + ++ N
Sbjct: 229 ----NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACN 283

Query: 370 NLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL-EGPIPVEFCQLDLLQILDISDN 428
               G  L ++    +          +Q I +  N+L   P+     ++  L +L+   N
Sbjct: 284 RGISGEQLKDD---WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 429 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGH 487
            + G LP+ F                 +L   +L+YN++     ++     Q+ +L   H
Sbjct: 341 QLEGKLPA-FGSEI-------------KLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 488 NNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS 546
           N L+    +     ++ +  +D S N +       FD   L  +     ++     I  S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--LDPTPFKGINVSS---INLS 441

Query: 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKL-------IGPIPPQI 599
                 N   QI +  +               S LS ++L  N L       +       
Sbjct: 442 -----NN---QISKFPKELFST---------GSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 600 GNLTRIQTLNLSHNDLIGLIPS-TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS- 657
            N   + +++L  N L  L      + L ++  +DLS N  +   P Q +   TL+ F  
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 658 -----VAYNNLSGEIPEW 670
                   N    E PE 
Sbjct: 544 RNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  190 bits (485), Expect = 7e-52
 Identities = 77/573 (13%), Positives = 164/573 (28%), Gaps = 138/573 (24%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
            +  L +      G +P  +  LT L +L + S+    +        +++          
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                                  +     +              R   S           
Sbjct: 142 R---------------------MHYQKTFVD----------YDPREDFS----------- 159

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLG 288
                 DL    ++                 K  Q+  +++++     +   +    +L 
Sbjct: 160 ------DLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF---VSKAVMRLTKLR 209

Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
              + N+ F      E  +        N+       +      N+K L  +++ N     
Sbjct: 210 QFYMGNSPFVAENICEAWE------NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL-E 407
           ++P  L      +Q + ++ N    G  L ++    +          +Q I +  N+L  
Sbjct: 264 KLPTFLK-ALPEMQLINVACNRGISGEQLKDD---WQALADAPVGEKIQIIYIGYNNLKT 319

Query: 408 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRL 466
            P+     ++  L +L+   N + G LP+ F                 +L   +L+YN++
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEI-------------KLASLNLAYNQI 365

Query: 467 NGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 525
                ++     Q+ +L   HN L+    +     ++ +  +D S N +       FD  
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP- 424

Query: 526 TLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLD 585
            L  +     ++                                              ++
Sbjct: 425 -LDPTPFKGINVSS--------------------------------------------IN 439

Query: 586 LSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-------IPSTFSNLKHVESLDLSNNK 638
           LS N++           + + ++NL  N L  +           F N   + S+DL  NK
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 639 LNGKIP--HQLVELKTLEVFSVAYNNLSGEIPE 669
           L   +    +   L  L    ++YN+ S   P 
Sbjct: 500 LTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (429), Expect = 2e-44
 Identities = 76/540 (14%), Positives = 156/540 (28%), Gaps = 92/540 (17%)

Query: 15  SSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFL 74
                  +    +          S    + +         K    + +  T+I   +N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 75  QVISES---MPSLKYLSLSYSTLGT---------------NSSRILDRGLCSPVHLQELY 116
             +S++   +  L+   +  S                      +  D    +   L ++ 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISS-------SPLIHLTSIEKLYLSNN 169
           + +      LP  +  L  +++++V+ N+              +       I+ +Y+  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 170 HFQ-IPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           + +  P+    L    +L       N+L  ++    S      +L+ L+L+         
Sbjct: 316 NLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASLNLAYNQ------ 364

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRL 287
                         ++ I      P        ++  LS  ++ L   P      S   +
Sbjct: 365 --------------ITEI------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
             +D S N                              +  +      +  ++LSNN ++
Sbjct: 405 SAIDFSYNEIGSVDGKNFD------------------PLDPTPFKGINVSSINLSNNQIS 446

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
               E  +     L S+ L  N L E   +  NSL         N   L  I +  N L 
Sbjct: 447 KFPKELFS-TGSPLSSINLMGNMLTE---IPKNSLKD-ENENFKNTYLLTSIDLRFNKLT 501

Query: 408 G-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRL 466
                     L  L  +D+S N+ S       +  ++K   +          RD   NR 
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ-------RDAQGNRT 554

Query: 467 NGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 526
               P+ +     L+ L +G N++     V       + +LD+ +N              
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (415), Expect = 1e-42
 Identities = 51/396 (12%), Positives = 122/396 (30%), Gaps = 59/396 (14%)

Query: 281 IHSHKRLGMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALD-GSIPSSLGNMKFLQ 337
           ++S+ R+  L +      G +P  IG +  L  L L ++     +    P  +      +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 338 ILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ 397
                  H      ++            L  +       +N++     I +         
Sbjct: 137 QKQKMRMHYQKTFVDYDP----REDFSDLIKD------CINSDPQQKSIKKSSRITLKDT 186

Query: 398 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
            I   +N++   +     +L  L+   + ++                             
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE--------------- 230

Query: 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGP 517
             +  Y +   +     D L  L+ + + +     ++   L  L ++QL++++ N     
Sbjct: 231 --NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 518 IPPCFDNTTLYESYSNSS--SLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575
                D   L ++        +   +    +              + +            
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET--------SLQK------------ 328

Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
             +  L  L+   N+L G   P  G+  ++ +LNL++N +  +  +     + VE+L  +
Sbjct: 329 --MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 636 NNKLNGKIP--HQLVELKTLEVFSVAYNNLSGEIPE 669
           +NKL   IP       +  +     +YN +     +
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (387), Expect = 5e-39
 Identities = 55/454 (12%), Positives = 134/454 (29%), Gaps = 92/454 (20%)

Query: 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPI 303
             + M G  P   L +N ++  LSL      G     I     L +L + ++  + +  +
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 304 EIGDVLP---SLYLFNNSMNALDGSIPSSLGNMKF--LQILDLSNNHLTGEIPEHLAVGC 358
                +    S             +         F  L    ++++     I +   +  
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-T 182

Query: 359 VNLQSLALSNNNLQ------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL 406
           +    +   +NN+                Y+ N+    +           +Y        
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQ 237

Query: 407 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRDLSYNR 465
                +++  L  L  +++ +      LP+    L  ++ ++++ N             +
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-----GEQLK 292

Query: 466 LNGSIPDWVDGLSQLSHLILGHNNL-EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN 524
            +           ++  + +G+NNL    V   L ++ +L +L+   N L G   P F +
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGS 351

Query: 525 TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGL 584
                                                                   L+ L
Sbjct: 352 -----------------------------------------------------EIKLASL 358

Query: 585 DLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF-SNLKHVESLDLSNNKLNG-- 641
           +L+ N++        G   +++ L+ +HN L  +       ++  + ++D S N++    
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 642 -----KIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
                 +     +   +   +++ N +S    E 
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (370), Expect = 9e-37
 Identities = 72/511 (14%), Positives = 145/511 (28%), Gaps = 112/511 (21%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
             T L    +  S           +I  + +N +  Y +         + + K L  + +
Sbjct: 204 RLTKLRQFYMGNSPF------VAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEV 256

Query: 63  MSTRIALNTNFLQVISES---MPSLKYLSLSYSTLGTNSSRILDRG----LCSPVHLQEL 115
                  N   L  +      +P ++ ++++ +   +      D            +Q +
Sbjct: 257 ------YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 116 YIGSNDLR-GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-I 173
           YIG N+L+   +   +  +  L +L+   NQL G + +        +  L L+ N    I
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEI 368

Query: 174 PISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLY 233
           P +        +++     +N+L              F    +S                
Sbjct: 369 PANF--CGFTEQVENLSFAHNKL--------KYIPNIFDAKSVS---------------- 402

Query: 234 HQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDIS 293
               +  ++ S+              N    ++  V+     P          +  +++S
Sbjct: 403 ---VMSAIDFSY--------------N----EIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 294 NNNFRGHIPIEIGD--VLPSLYLFNNSMNAL----DGSIPSSLGNMKFLQILDLSNNHLT 347
           NN               L S+ L  N +  +          +  N   L  +DL  N LT
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN---- 403
               +  A     L  + LS N+  +             P    N + L+   + N    
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK------------FPTQPLNSSTLKGFGIRNQRDA 549

Query: 404 --NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-D 460
             N      P        L  L I  N+I   +     P                +   D
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP---------------NISVLD 593

Query: 461 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
           +  N        +V    +    +L ++  +
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (339), Expect = 5e-33
 Identities = 46/375 (12%), Positives = 109/375 (29%), Gaps = 90/375 (24%)

Query: 306 GDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365
           G    + + FN  ++        SL +   +  L L     +G +P+ +      L+ LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDL--LQIL 423
           L ++  +        +     P+ +      +       H +        + D   L   
Sbjct: 112 LGSHGEK-------VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 424 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHL 483
            I+ +    S+      +++K   +               N +   +   V  L++L   
Sbjct: 165 CINSDPQQKSIKKSSR-ITLKDTQI-----------GQLSNNI-TFVSKAVMRLTKLRQF 211

Query: 484 ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEI 543
            +G++    E + +       +  +      +      +DN                   
Sbjct: 212 YMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWDN------------------- 247

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603
                                             L  L+ +++     +  +P  +  L 
Sbjct: 248 ----------------------------------LKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 604 RIQTLNLSHNDLIGL--------IPSTFSNLKHVESLDLSNNKL-NGKIPHQLVELKTLE 654
            +Q +N++ N  I            +     + ++ + +  N L    +   L ++K L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 655 VFSVAYNNLSGEIPE 669
           +    YN L G++P 
Sbjct: 334 MLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 18/219 (8%), Positives = 58/219 (26%), Gaps = 7/219 (3%)

Query: 453 LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
                  +   +         ++   +++ L L      G V   + +L +L++L L ++
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH 115

Query: 513 NLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572
                                             ++         + +    +      I
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 573 YQGKVLSL-LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631
            +   ++L  + +    N +   +   +  LT+++   + ++  +               
Sbjct: 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN----- 229

Query: 632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
            +    +       +   LK L    V       ++P +
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (473), Expect = 2e-50
 Identities = 100/586 (17%), Positives = 188/586 (32%), Gaps = 101/586 (17%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P   + L    N L        + L +L  LD++  Q+   I          ++ L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQS-HSLTAPNFQLSRLSLSSGYEDGVT 227
           N     ++   L     LK  +     +++      H+       L  L L S +   + 
Sbjct: 91  NPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK----TLESLYLGSNHISSIK 145

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSL-VNDSLGGPFRLPIHSHKR 286
            PK    +  L+ ++  +  ++       + +  +   LSL +N +              
Sbjct: 146 LPKGFPTEK-LKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 287 LGMLDISNNNFRGHIPIEIGDV----LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
              L+         I   + +     L      +     +  ++   L  M  ++ ++L 
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQ 262

Query: 343 NNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402
            ++               LQ L L+  +L E            +P  L  L+ L+ +++ 
Sbjct: 263 KHYFFNISSNTFH-CFSGLQELDLTATHLSE------------LPSGLVGLSTLKKLVLS 309

Query: 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHG----- 455
            N  E    +       L  L I  N     L + C   L +++++ LS + +       
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 456 -------QLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQL 506
                   L+  +LSYN       +      QL  L L    L+  +       L+ L++
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 507 LDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT 566
           L+LS++ L       FD                                           
Sbjct: 430 LNLSHSLLDISSEQLFDG------------------------------------------ 447

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKLIGPI---PPQIGNLTRIQTLNLSHNDLIGLIPSTF 623
                      L  L  L+L  N            +  L R++ L LS  DL  +    F
Sbjct: 448 -----------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 624 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
           ++LK +  +DLS+N+L       L  LK +   ++A N++S  +P 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (403), Expect = 3e-41
 Identities = 84/561 (14%), Positives = 159/561 (28%), Gaps = 101/561 (18%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
                NL +L L    ++          F S                             
Sbjct: 53  FSRLINLTFLDLTRCQIY----WIHEDTFQSQHR-------------------------- 82

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                                  L  L L+ + L      + +  L  P  L+ L+    
Sbjct: 83  -----------------------LDTLVLTANPL----IFMAETALSGPKALKHLFFIQT 115

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLE 178
            +       + N  +L  L + SN ++ SI          ++ L   NN         + 
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 179 PLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ-HD 237
            L   +   +   + N    +I         +     L+        V F          
Sbjct: 175 SL-QQATNLSLNLNGN----DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 238 LETVELSHIKMNGEFPTWLLEN-NTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
           L       +      P          +  ++L             H    L  LD++  +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
               +P  +   L +L     S N  +     S  N   L  L +  N    E+      
Sbjct: 290 LS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 357 GCVNLQSLALSNNNLQ---------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIM 401
              NL+ L LS+++++               + L L+ N               L+ + +
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 402 PNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR 459
               L+       F  L LL++L++S + +  S    F  L +++ ++L  N       +
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 460 --------------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQ 505
                          LS+  L+         L  ++H+ L HN L    +  L  L  + 
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

Query: 506 LLDLSNNNLHGPIPPCFDNTT 526
            L+L++N++   +P      +
Sbjct: 528 -LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (359), Expect = 1e-35
 Identities = 62/374 (16%), Positives = 114/374 (30%), Gaps = 61/374 (16%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
           +    N  +N + G++P+S       + L+ S N L        +   +NL  L L+   
Sbjct: 16  TYNCENLGLNEIPGTLPNS------TECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQ 68

Query: 371 LQ-------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
           +              + L L  N L       L     L+++      +     +     
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 418 DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDG 476
             L+ L +  N+IS        P               +LK  D   N ++    + +  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTE-------------KLKVLDFQNNAIHYLSKEDMSS 175

Query: 477 LSQLSHLILGHNNLE-GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSS 535
           L Q ++L L  N  +   +     +    Q L+         I     N+T+        
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI-------Q 228

Query: 536 SLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPI 595
           SL          E     V + + E                 +S+ S ++L  +      
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCE-----------------MSVES-INLQKHYFFNIS 270

Query: 596 PPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655
                  + +Q L+L+    +  +PS    L  ++ L LS NK             +L  
Sbjct: 271 SNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 656 FSVAYNNLSGEIPE 669
            S+  N    E+  
Sbjct: 330 LSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (335), Expect = 2e-32
 Identities = 80/519 (15%), Positives = 166/519 (31%), Gaps = 111/519 (21%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           + +      L+L+ +   I+ ++  A      ++L+    +   V+       FK L++ 
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI-------FKGLKNS 225

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                              ++ SL   +         S  + +      + ++ + +  +
Sbjct: 226 -------------------TIQSLWLGTFEDMDDEDISPAVFE--GLCEMSVESINLQKH 264

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
                        + L+ LD+++  L+  + S  L+ L++++KL LS N F+    +   
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQIS-A 321

Query: 181 FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240
            N   L       N    E+                               L +  +L  
Sbjct: 322 SNFPSLTHLSIKGNTKRLEL---------------------------GTGCLENLENLRE 354

Query: 241 VELSHIKMNG-EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRG 299
           ++LSH  +   +     L N + L+ L+L  +              +L +LD++    + 
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 300 HIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359
                                       S   N+  L++L+LS++ L     +    G  
Sbjct: 415 KDA------------------------QSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLP 449

Query: 360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDL 419
            LQ L L  N+  +G     NSL          L  L+ +++    L       F  L +
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQ--------TLGRLEILVLSFCDLSSIDQHAFTSLKM 501

Query: 420 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQ 479
           +  +D+S N ++ S       L               +  +L+ N ++  +P  +  LSQ
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLK-------------GIYLNLASNHISIILPSLLPILSQ 548

Query: 480 LSHLILGHNNLEGEVLVQLCELNQL-QLLDLSNNNLHGP 517
              + L  N L+       C      +    +   L   
Sbjct: 549 QRTINLRQNPLDCT-----CSNIYFLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 2e-15
 Identities = 30/237 (12%), Positives = 56/237 (23%), Gaps = 54/237 (22%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
           + S+N L          L  L+ L L    +           ++L  L L+ N L     
Sbjct: 39  EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE 98

Query: 520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLS 579
                                                                       
Sbjct: 99  TALSG-----------------------------------------------------PK 105

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
            L  L      +       + N   +++L L  N +  +        + ++ LD  NN +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGNTFLCGLPLPI 695
           +      +  L+     S+  N      I       A F   ++ G   L  +   +
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
            +     L   IP  + N T  + L  S N L  +  +TFS L ++  LDL+  ++    
Sbjct: 17  YNCENLGLNE-IPGTLPNST--ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 644 PHQLVELKTLEVFSVAYNNLSGEIPEW 670
                    L+   +  N L       
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETA 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (469), Expect = 7e-50
 Identities = 103/637 (16%), Positives = 187/637 (29%), Gaps = 119/637 (18%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L  +   I  S KN+ +S+  +  +     F +F  L+ L        L+   ++ I + 
Sbjct: 23  LSKVPDDIPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWL-------DLSRCEIETIEDK 74

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
               +  L  L L+ + +                 L+ L      L     + +  L +L
Sbjct: 75  AWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 137 RILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLEPLFN-HSRLKTFYADN 193
           + L+V+ N +      +   +LT++  + LS N+ Q      L+ L        +     
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 194 NELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFP 253
           N     I           +L  L+L   +         L +   L    L   +   E  
Sbjct: 191 N----PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 254 TWLLENNT-------KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIG 306
             + E +         + +  L   +      +  H    +  + ++  + +    +   
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306

Query: 307 DVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL 366
               SL +    +            ++ FL+ L L+ N  +    +   V   +L  L L
Sbjct: 307 FKWQSLSIIRCQLKQF------PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDL 357

Query: 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 426
           S N L           SG           L+++ +  N     +   F  L+ LQ LD  
Sbjct: 358 SRNALSF---------SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQ 407

Query: 427 DNNISGSLP-SCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLI 484
            + +      S F  L              +L   D+SY            GL+ L+ L 
Sbjct: 408 HSTLKRVTEFSAFLSLE-------------KLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 485 LGHNNLEGEVLVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEI 543
           +  N+ +   L         L  LDLS   L       FD                    
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT------------------- 495

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603
                                             L  L  L++S N L+         L 
Sbjct: 496 ----------------------------------LHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
            + TL+ S N +           K +   +L+NN + 
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (344), Expect = 1e-33
 Identities = 75/477 (15%), Positives = 137/477 (28%), Gaps = 41/477 (8%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
               T+LE L    + L       I     +LK L++++  ++       F +  +L H+
Sbjct: 100 FSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158

Query: 61  GMMSTRI-ALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
            +    I  +  N LQ + E+      L +S      N    +       + L EL +  
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-----NPIDFIQDQAFQGIKLHELTLRG 213

Query: 120 NDLRGSLPW-CMTNLTSLRILDVSSNQLTG-----SISSSPLIHLTSIEKLYLSNNHFQI 173
           N    ++   C+ NL  L +  +   +            S +  L  +        +   
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 174 -PISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFL 232
               +      + +         +             +  + R  L       + F K L
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333

Query: 233 Y-------------HQHDLETVELSHIKMNGEFP-TWLLENNTKLRQLSLVNDSLGGPFR 278
                             L  ++LS   ++     ++       LR L L  +       
Sbjct: 334 TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA 393

Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338
                 + L  LD  ++  +          L  L   + S              +  L  
Sbjct: 394 -NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 339 LDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY 398
           L ++ N        ++     NL  L            L+   L          L  LQ 
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFL-----------DLSKCQLEQISWGVFDTLHRLQL 501

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH 454
           + M +N+L       + QL  L  LD S N I  S     H   S+   +L+ N + 
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 4e-14
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 25/273 (9%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
           +   L+ LTL  +    S+     +  PSL  L +S   ++    G           L  
Sbjct: 326 DLPFLKSLTL--TMNKGSISFKKVA-LPSLSYLDLSRNALSFS--GCCSYSDLGTNSL-- 378

Query: 63  MSTRIALNTNFLQVISE---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
               + L+ N   ++S     +  L++L   +STL   +       L     L  L I  
Sbjct: 379 --RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL---EKLLYLDISY 433

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
            + +         LTSL  L ++ N    +  S+   + T++  L LS    +  IS   
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV 492

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239
                RL+     +N L    +  ++     + LS L  S    +        +    L 
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYN---QLYSLSTLDCSFNRIETS-KGILQHFPKSLA 548

Query: 240 TVELSH-----IKMNGEFPTWLLENNTKLRQLS 267
              L++     I  + +F  W+ E    L  + 
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 9e-14
 Identities = 34/212 (16%), Positives = 61/212 (28%), Gaps = 57/212 (26%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
                +L+  +PD +   S   ++ L  N L+          ++LQ LDLS   +     
Sbjct: 17  QCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLS 579
             +                                                       L 
Sbjct: 74  KAWHG-----------------------------------------------------LH 80

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
            LS L L+ N +    P     LT ++ L      L  L       L  ++ L++++N +
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140

Query: 640 NG-KIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
           +  K+P     L  L    ++YN +       
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
                 KL   +P  I   +  + ++LS N L  L   +FSN   ++ LDLS  ++    
Sbjct: 16  YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 644 PHQLVELKTLEVFSVAYNNLSGEIPEW 670
                 L  L    +  N +    P  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGS 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (413), Expect = 8e-42
 Identities = 125/719 (17%), Positives = 230/719 (31%), Gaps = 120/719 (16%)

Query: 72  NFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSL-PWCM 130
             L  + + + + + L LS++ +      +          LQ L +GS     ++     
Sbjct: 14  CNLTQVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 131 TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNHSRLKTF 189
            NL +LRILD+ S+++   +       L  + +L L         +      N   L   
Sbjct: 70  RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN 249
               N++ +     H        L  +  SS                 +   EL  ++  
Sbjct: 129 DLSKNQIRS--LYLHPSFGKLNSLKSIDFSS------------NQIFLVCEHELEPLQGK 174

Query: 250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVL 309
                + L  N+   ++S+       PFR     +  L +LD+S N +   I        
Sbjct: 175 -TLSFFSLAANSLYSRVSVDWGKCMNPFR-----NMVLEILDVSGNGWTVDIT------- 221

Query: 310 PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
                  N  NA+  S   SL     +       +++  +  ++   G        L+ +
Sbjct: 222 ------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAG--------LARS 266

Query: 370 NLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429
           +++  L L++  +     R    L  L+ + +  N +       F  LD LQ+L++S N 
Sbjct: 267 SVRH-LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 430 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHN 488
           +     S F+ L              ++   DL  N +          L +L  L L  N
Sbjct: 326 LGELYSSNFYGLP-------------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372

Query: 489 NLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
            L       +  +  +  + LS N L            ++ S +   +LD        + 
Sbjct: 373 ALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI-LYFLLRVP 426

Query: 549 SPQ-----GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI---- 599
             Q      N           +               L  L L  N L      ++    
Sbjct: 427 HLQILILNQNRFSSCSGDQTPS-----------ENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 600 -GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658
              L+ +Q L L+HN L  L P  FS+L  +  L L++N+L     + L     LE+  +
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDI 533

Query: 659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP--------------------ICRS 698
           + N L          F + +      N F+C   L                      C  
Sbjct: 534 SRNQLL-APNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 699 PATMSEASIGNERDDNLIDMDSF----FITFTTSYVIVIFAIVIILYVNSYWRRRWFYF 753
           P + S  S+ +   +   + +      F  F    V +   ++ IL V  +    +  +
Sbjct: 591 PDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 1e-29
 Identities = 68/391 (17%), Positives = 121/391 (30%), Gaps = 64/391 (16%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
                 N    +P     VL +      S N +     SS   ++ LQ+L+L + +    
Sbjct: 9   AFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 350 IPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKI--PRWLGNLT 394
           I +       NL+ L L ++ +                L L    LS  +    +  NL 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 395 WLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 453
            L  + +  N +    +   F +L+ L+ +D S N I         PL       + +  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ----GKTLSFF 179

Query: 454 HGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNN 513
                  L+ N L   +             +                   L++LD+S N 
Sbjct: 180 ------SLAANSLYSRVSVDWGKCMNPFRNM------------------VLEILDVSGNG 215

Query: 514 LHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
               I   F N        +           F            I +  + T       +
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFG--------FHNIKDPDQNT-------F 260

Query: 574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD 633
            G   S +  LDLS   +          L  ++ LNL++N +  +    F  L +++ L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           LS N L          L  +    +  N+++
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 9e-29
 Identities = 103/547 (18%), Positives = 190/547 (34%), Gaps = 70/547 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEV-NGVVHGQGFPHFKSLEH 59
             N  NL  L L  S ++  L          L  L + +C + + V+    F + K+L  
Sbjct: 69  FRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 60  LGMMS---TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
           L +       + L+ +F       + SLK +  S + +       L   L     L    
Sbjct: 128 LDLSKNQIRSLYLHPSF-----GKLNSLKSIDFSSNQIFLVCEHEL-EPLQGK-TLSFFS 180

Query: 117 IGSNDLRGSLPWCMTNL------TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           + +N L   +               L ILDVS N  T  I+ +    ++  +   L   H
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                          +       + +  +  Q+         +  L LS G+   +   +
Sbjct: 241 --------------HIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN-SR 284

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
                 DL+ + L++ K+N +           L+ L+L  + LG  +    +   ++  +
Sbjct: 285 VFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
           D+  N+    I  +    L  L   +   NAL     +++  +  +  + LS N L    
Sbjct: 344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV--- 394

Query: 351 PEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG-KIPRWLGNLTWLQYIIMPNNHLEGP 409
                     L  + L+ N     ++L+ N L    I  +L  +  LQ +I+  N     
Sbjct: 395 ---------TLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 410 IPVEFCQ-LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLN 467
              +       L+ L + +N +  +  +       + +          L+   L++N LN
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS--------HLQVLYLNHNYLN 493

Query: 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527
              P     L+ L  L L  N L   VL        L++LD+S N L  P P  F + ++
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551

Query: 528 YESYSNS 534
            +   N 
Sbjct: 552 LDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 16/205 (7%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGV----VHGQGFPHFKS 56
           L    +L+ L L+ +           S  PSL+ L +    +       +    F     
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 57  LEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
           L+ L +    +    +    +   + +L+ LSL+ + L   S   L      P +L+ L 
Sbjct: 482 LQVLYLNHNYL---NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL------PANLEILD 532

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPIS 176
           I  N L    P       SL +LD++ N+       S  I+  +   + ++     I   
Sbjct: 533 ISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589

Query: 177 LEPLFNHSRLKTFYADNNELNAEIT 201
               F+   L +   +  +    + 
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLK 614

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 9e-38
 Identities = 97/542 (17%), Positives = 172/542 (31%), Gaps = 70/542 (12%)

Query: 18  HISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVI 77
            ++  +   ++  S KNL +S+  +  +     F  F  L+ L        L+   +Q I
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVL-------DLSRCEIQTI 67

Query: 78  SE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNL 133
            +    S+  L  L L+ + +      +          LQ+L     +L     + + +L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLEPLFN-HSRLKTFY 190
            +L+ L+V+ N +          +LT++E L LS+N  Q      L  L        +  
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 191 ADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
              N     +           +L +L+L + ++        +     LE   L   +   
Sbjct: 184 LSLN----PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 251 -----EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML---DISNNNFRGHIP 302
                +F    LE    L         L       I     L  +    + +        
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 303 IEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 362
                    L L N            S      L+ L  ++N       E   V   +L+
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLE 350

Query: 363 SLALSNNNLQ---------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
            L LS N L                + L L+ N +   +      L  L+++   +++L+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 408 G-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR------ 459
                  F  L  L  LDIS  +   +    F+ L S++ + ++ N              
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 460 ------DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNN 513
                 DLS  +L    P   + LS L  L +  N L+         L  LQ + L  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 514 LH 515
             
Sbjct: 530 WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 9e-36
 Identities = 104/614 (16%), Positives = 187/614 (30%), Gaps = 127/614 (20%)

Query: 65  TRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGS 119
             + L+ N L+ +        P L+ L LS         + ++ G      HL  L +  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-----CEIQTIEDGAYQSLSHLSTLILTG 85

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
           N ++       + L+SL+ L      L  S+ + P+ HL ++++L +++N  Q    L  
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPE 143

Query: 180 LFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL 238
            F++ + L+     +N++   I  +         L  LSL              + +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR 298
             + L +   +       ++    L    LV         L               +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE----------KFDKSALE 252

Query: 299 GHIPIEIGDVLPSLYLFNNSMNALDGS---IPSSLGNMKFLQILDLSNNHLTGEIPEHLA 355
           G         L +L +    +  LD     I      +  +    L +  +   + +   
Sbjct: 253 G---------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-- 300

Query: 356 VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC 415
                 Q L L N                        L  L+ +   +N           
Sbjct: 301 SYNFGWQHLELVNCKF--------GQFPT------LKLKSLKRLTFTSNKGGNAFS--EV 344

Query: 416 QLDLLQILDISDNNIS--GSLPSCFHPL-SIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472
            L  L+ LD+S N +S  G          S+K + LS N +               ++  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--------------TMSS 390

Query: 473 WVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESY 531
              GL QL HL   H+NL+          L  L  LD+S+ +        F+        
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------- 443

Query: 532 SNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKL 591
                                                         LS L  L ++ N  
Sbjct: 444 ----------------------------------------------LSSLEVLKMAGNSF 457

Query: 592 IGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 650
                P I   L  +  L+LS   L  L P+ F++L  ++ L++++N+L          L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 651 KTLEVFSVAYNNLS 664
            +L+   +  N   
Sbjct: 518 TSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (356), Expect = 2e-35
 Identities = 96/605 (15%), Positives = 184/605 (30%), Gaps = 127/605 (20%)

Query: 72  NFLQVISESMPSLKYLSLSYS-------------------TLGTNSSRILDRGLCSP-VH 111
           NF ++      S K L LS++                    L     + ++ G      H
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
           L  L +  N ++       + L+SL+ L      L  S+ + P+ HL ++++L +++N  
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 172 QIPISLEPLFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
           Q    L   F++ + L+     +N++   I  +         L  LSL            
Sbjct: 137 Q-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
             + +  L  + L +   +       ++    L    LV         L           
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE---------- 244

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGS---IPSSLGNMKFLQILDLSNNHLT 347
               +   G         L +L +    +  LD     I      +  +    L +  + 
Sbjct: 245 KFDKSALEG---------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQEG-------LYLNNNSLSGKIPRWLGNLTWLQYII 400
                    G  +L+ +                 L   +N           +L  L+++ 
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLD 353

Query: 401 MPNNHLE--GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 458
           +  N L   G           L+ LD+S N +  ++ S F  L              QL+
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-------------QLE 399

Query: 459 R-DLSYNRLNGSIPDWV--DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
             D  ++ L   + ++     L  L +L + H +           L+ L++L ++ N+  
Sbjct: 400 HLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575
               P                                       +IF             
Sbjct: 459 ENFLP---------------------------------------DIFTELRN-------- 471

Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
                L+ LDLS  +L    P    +L+ +Q LN++ N L  +    F  L  ++ + L 
Sbjct: 472 -----LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

Query: 636 NNKLN 640
            N  +
Sbjct: 527 TNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (314), Expect = 5e-30
 Identities = 70/435 (16%), Positives = 144/435 (33%), Gaps = 59/435 (13%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           LD+S N  R H+        P L + + S   +      +  ++  L  L L+ N +   
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 350 IPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSL-SGKIPRWLGNLTW 395
           +      G  +LQ L     NL              + L + +N + S K+P +  NLT 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQI----LDISDNNISGSLPSCFHPLSIKQVHLSKN 451
           L+++ + +N ++     +   L  + +    LD+S N ++   P  F  + + ++ L  N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 452 MLHGQLKRDL------------------SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493
                + +                    +   L       ++GL  L+        L+  
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 494 VLVQ---LCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
           +         L  +    L +  +   +     N         +    +   +       
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 551 QGNVEKQIHEIFEFTT-KNIVYIY--------------QGKVLSLLSGLDLSCNKLIGPI 595
                 +    F      ++ ++                    + L  LDLS N +I  +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 596 PPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
                 L +++ L+  H++L  +   S F +L+++  LD+S+             L +LE
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 655 VFSVAYNNLSGEIPE 669
           V  +A N+       
Sbjct: 449 VLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (264), Expect = 7e-24
 Identities = 79/461 (17%), Positives = 156/461 (33%), Gaps = 45/461 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
               ++L+ L    ++L  SL         +LK L++++  +      + F +  +LEHL
Sbjct: 96  FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 61  GMMSTRIALNTNFLQVISESM-PSLKYLSLSYSTL--GTNSSRILDRGLCSPVHLQELYI 117
                   L++N +Q I  +    L  + L   +L    N    +  G    + L +L +
Sbjct: 155 D-------LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 118 GSNDLRGSLPW-CMTNLTSLRILDVSSNQLTG-----SISSSPLIHLTSIEKLYLSNNHF 171
            +N    ++   C+  L  L +  +   +            S L  L ++        + 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 172 QI-PISLEPLFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP 229
                 +  LFN  + + +F   +  +      S++    + +L            +   
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 230 KFLYHQH-------------DLETVELSHIKMNG-EFPTWLLENNTKLRQLSLVNDSLGG 275
           K L                  LE ++LS   ++     +      T L+ L L  + +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 276 PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF 335
                    ++L  LD  ++N +      +   L +L   + S      +       +  
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
           L++L ++ N         +     NL  L LS   L+         LS   P    +L+ 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLS---PTAFNSLSS 495

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436
           LQ + M +N L+      F +L  LQ + +  N    S P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
           IP  +      + L+LS N L  L   +F +   ++ LDLS  ++          L  L 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 655 VFSVAYNNLSGEIPEW 670
              +  N +       
Sbjct: 80  TLILTGNPIQSLALGA 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (347), Expect = 3e-34
 Identities = 85/548 (15%), Positives = 166/548 (30%), Gaps = 78/548 (14%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
              ++ L +  N +       +    +L++L + S+++  +I       L S+E L LS+
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           NH    +S       S LK      N                               +  
Sbjct: 84  NHLSS-LSSSWFGPLSSLKYLNLMGNPYQT---------------------------LGV 115

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
                +  +L+T+ + +++   E         T L +L +   SL       + S + + 
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 289 MLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
            L +  +     +     D+L S+    L + ++     S          ++ L    + 
Sbjct: 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 346 LTGEIPEHLAV---GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402
           LT E    L       + L  +   +  L      N +               ++ + +P
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DL 461
             +L   +   +  L+ ++ + + ++ +     S    L               L+  DL
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-------------SLEFLDL 341

Query: 462 SYNRLNGSIPDW---VDGLSQLSHLILGHNNLE--GEVLVQLCELNQLQLLDLSNNNLHG 516
           S N +                L  L+L  N+L    +    L  L  L  LD+S N  H 
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 517 PIPPCFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572
           P+P           L  S +    +         +     N    +     F  +     
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN---NLDSFSLFLPR----- 452

Query: 573 YQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632
                   L  L +S NKL     P       +  + +S N L  +    F  L  ++ +
Sbjct: 453 --------LQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502

Query: 633 DLSNNKLN 640
            L  N  +
Sbjct: 503 WLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 1e-32
 Identities = 86/489 (17%), Positives = 153/489 (31%), Gaps = 55/489 (11%)

Query: 69  LNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR 123
           L+ N +  I         +L+ L L       +    ++         L+ L +  N L 
Sbjct: 33  LSFNKITYIGHGDLRACANLQVLILKS-----SRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 124 GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNH 183
                    L+SL+ L++  N       +S   +LT+++ L + N      I        
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 184 SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243
           + L         L                +  L+L    E       F      +  +EL
Sbjct: 148 TSLNELEIKALSLR---NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLEL 203

Query: 244 SHIKMNGEFPTWL-------LENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISN 294
               +     + L              R   L ++S     +L   I     +   D + 
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 295 NNFRGHIPIEIGDV-------LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
           N      P E   V         ++   +     L   + +    ++ ++ + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
             +P   +    +L+ L LS N + E    N+           G    LQ +++  NHL 
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC--------KGAWPSLQTLVLSQNHLR 374

Query: 408 --GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML----HGQLKR-- 459
                      L  L  LDIS N       SC  P  ++ ++LS   +        +   
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

Query: 460 --DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGP 517
             D+S N L+ S       L +L  L +  N L  + L        L ++ +S N L   
Sbjct: 435 VLDVSNNNLD-SFS---LFLPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSV 488

Query: 518 IPPCFDNTT 526
               FD  T
Sbjct: 489 PDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (307), Expect = 3e-29
 Identities = 65/397 (16%), Positives = 123/397 (30%), Gaps = 48/397 (12%)

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
            G+ D  + +F   IP  +   + SL L  N +  +       L     LQ+L L ++ +
Sbjct: 7   SGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRI 62

Query: 347 TGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSG-KIPRWLGN 392
              I         +L+ L LS+N+L              + L L  N      +     N
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 393 LTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 451
           LT LQ + + N      I    F  L  L  L+I   ++          +          
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH------ 175

Query: 452 MLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSN 511
                    L  +     +  + D LS + +L L   NL       L        +    
Sbjct: 176 ------HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 512 NNLHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570
                     F+    L       S ++        +     +    + E+ +  T    
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-- 287

Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630
                     +  L +    L   +      L +++ + + ++ +  +  S   +LK +E
Sbjct: 288 ----------IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 631 SLDLSNNKLNGKIPHQLVE---LKTLEVFSVAYNNLS 664
            LDLS N +  +            +L+   ++ N+L 
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 9e-27
 Identities = 87/568 (15%), Positives = 168/568 (29%), Gaps = 97/568 (17%)

Query: 132 NLTSLRILDVSSNQLT--------------------GSISSSPLIHLTSIEKLYLSNNHF 171
           +  +  + D  S   T                      I    L    +++ L L ++  
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 172 QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKF 231
              I  +  ++   L+     +N L++    S S   P   L  L+L       +     
Sbjct: 63  NT-IEGDAFYSLGSLEHLDLSDNHLSSL---SSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 232 LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLD 291
             +  +L+T+ + +++   E         T L +L +   SL       + S + +  L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 292 ISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
           +  +     +     D+L S+    L + ++     S          ++ L    + LT 
Sbjct: 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 349 EIPEHLAV---GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNH 405
           E    L       + L  +   +  L      N +               ++ + +P  +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 406 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYN 464
           L   +   +  L+ ++ + + ++ +     S    L               L+  DLS N
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-------------SLEFLDLSEN 344

Query: 465 RLNGSIPDW---VDGLSQLSHLILGHNNLE--GEVLVQLCELNQLQLLDLSNNNLHGPIP 519
            +                L  L+L  N+L    +    L  L  L  LD+S N  H P+P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 520 PCFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575
                      L  S                           I  +              
Sbjct: 404 DSCQWPEKMRFLNLSS------------------------TGIRVVKT------------ 427

Query: 576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS 635
            +   L  LD+S N L       +  L   Q L +S N L  L  ++      +  + +S
Sbjct: 428 CIPQTLEVLDVSNNNLDS-FSLFLPRL---QELYISRNKLKTLPDASL--FPVLLVMKIS 481

Query: 636 NNKLNGKIPHQLVELKTLEVFSVAYNNL 663
            N+L          L +L+   +  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (257), Expect = 5e-23
 Identities = 59/360 (16%), Positives = 128/360 (35%), Gaps = 37/360 (10%)

Query: 355 AVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
           ++ C         + +            + L L+ N ++      L     LQ +I+ ++
Sbjct: 1   SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 405 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH--------G 455
            +       F  L  L+ LD+SDN++S    S F PL S+K ++L  N            
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 456 QLKR----DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLS 510
            L       +        I      GL+ L+ L +   +L       L  +  +  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 511 NNNLHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEK---QIHEIFEFTT 566
            +     +    D  +++       ++L         ++     ++K   +   + + + 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 567 KNIVYIYQGKV-LSLLSGLDLSCNKLIGPIPPQIG--------NLTRIQTLNLSHNDLIG 617
             ++ + +  + LS +   D + N L    P +              I+ L++    L  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 677
            + + +S L+ V+ + + N+K+          LK+LE   ++ N +  E  + +A    +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (324), Expect = 1e-31
 Identities = 56/393 (14%), Positives = 130/393 (33%), Gaps = 30/393 (7%)

Query: 281 IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILD 340
             +  R  +  +++++ +      +     ++   + S N L     + L     L++L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 341 LSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE--------GLYLNNNSLSGKIPRWLGN 392
           LS+N L  E  +        L++L L+NN +QE         L+  NN++S         
Sbjct: 65  LSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-SLPSCFHPL-SIKQVHLSK 450
              +    + NN +     ++      +Q LD+  N I   +         +++ ++L  
Sbjct: 122 KKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 451 NMLH--------GQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501
           N ++         +LK  DLS N+L   +       + ++ + L +N L   +   L   
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEI 561
             L+  DL  N  H      F +           ++ +         +         +  
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 562 FEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPS 621
            +                  + L    ++    +  +  N  R + ++        +I  
Sbjct: 297 EDLP-APFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 622 TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
                +   +L+     L+ ++ +       L+
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 1e-24
 Identities = 70/455 (15%), Positives = 144/455 (31%), Gaps = 61/455 (13%)

Query: 74  LQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNL 133
           +  I ++    K   ++ S+L     + L     S  +++EL +  N L       +   
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADN 193
           T L +L++SSN L     +  L  L+++  L L+NN+      ++ L     ++T +A N
Sbjct: 58  TKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 194 NELNAEITQSHSLTAPNFQ-LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEF 252
           N ++        ++    Q    + L++     +        +  ++ ++L   +++   
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 253 PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSH-KRLGMLDISNNNFRGHIPIEIGDV--L 309
              L  ++  L  L+L  + +   + +       +L  LD+S+N     +  E      +
Sbjct: 161 FAELAASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 310 PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
             + L NN +      I  +L   + L+  DL  N             C  L+     N 
Sbjct: 217 TWISLRNNKLV----LIEKALRFSQNLEHFDLRGNGFH----------CGTLRDFFSKNQ 262

Query: 370 NLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDL--LQILDISD 427
            +Q         L+G+        T   Y       L  P       L      +L    
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 428 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH 487
           +          +    +++             D    +    I            L    
Sbjct: 323 SETERLECERENQARQREI-------------DALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 488 NNLEGEV---LVQLCELNQLQLLDLSNNNLHGPIP 519
             L+ +V        EL+      +    L     
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 5e-24
 Identities = 75/535 (14%), Positives = 144/535 (26%), Gaps = 99/535 (18%)

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
           N    +I  V+ + L     +S      ++++L LS N                      
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------------------- 44

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
                                LS++S              L     LE + LS   +   
Sbjct: 45  --------------------PLSQIS-----------AADLAPFTKLELLNLSSNVLYET 73

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311
                LE+ + LR L L N+ +       +     +  L  +NNN    +    G    +
Sbjct: 74  LD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRGQGKKN 124

Query: 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL 371
           +YL NN +  L        G    +Q LDL  N +       LA     L+ L L  N +
Sbjct: 125 IYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 372 QEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
            +            +   +     L+ + + +N L   +  EF     +  + + +N + 
Sbjct: 182 YD------------VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 432 GSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLN-GSIPDWVDGLSQLSHLILGHNN 489
             +                      L+  DL  N  + G++ D+     ++  +      
Sbjct: 228 -LIEKALRFSQ-------------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQT 271

Query: 490 LEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES 549
           ++        E     L             P  D     +   ++  L  Q      +E 
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL-LSGQGSETERLEC 330

Query: 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLN 609
            + N  +Q            V             L+     L   +         +    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 610 LSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
                 I L  +T           +        +  Q V+   +  + +  +  +
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (251), Expect = 2e-22
 Identities = 50/341 (14%), Positives = 113/341 (33%), Gaps = 45/341 (13%)

Query: 361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLL 420
           +  +  + N  +    + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 2   IHEIKQNGNRYKI-EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 421 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH--GQLKR----DLSYNRLNGSIPDWV 474
           ++L++S N +           +++ + L+ N +              + N ++  +    
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSC-- 116

Query: 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNS 534
                  ++ L +N +     +     +++Q LDL  N +                 ++S
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--------AASS 168

Query: 535 SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594
            +L+    +         N               I  +    V + L  LDLS NKL   
Sbjct: 169 DTLE---HLNLQ-----YN--------------FIYDVKGQVVFAKLKTLDLSSNKLAF- 205

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
           + P+  +   +  ++L +N L+  I       +++E  DL  N  +          K   
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQR 263

Query: 655 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI 695
           V +VA   +  ++     +  T     + G      LP P 
Sbjct: 264 VQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 5e-20
 Identities = 61/451 (13%), Positives = 142/451 (31%), Gaps = 55/451 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             +  N++ L L G+ L       +A  F  L+ L++S    N +          +L  L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSS---NVLYETLDLESLSTLRTL 85

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                   LN N++Q +    PS++ L  + + +   S              + +Y+ +N
Sbjct: 86  D-------LNNNYVQELLV-GPSIETLHAANNNISRVSCSRG-------QGKKNIYLANN 130

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            +           + ++ LD+  N++     +       ++E L L  N       ++  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQ 187

Query: 181 FNHSRLKTFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHD 237
              ++LKT    +N+L     E   +  +T     L    L           K L    +
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRNNKLVL-------IEKALRFSQN 238

Query: 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNF 297
           LE  +L     +          N +++ ++    ++               +        
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 298 RGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKF----LQILDLSNNHLTGEIPEH 353
              +P    D L +L    +++ +  GS    L   +      + +D         + + 
Sbjct: 297 E-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQ 354

Query: 354 LAVGCVNLQSLALSNNNLQEGLYLNNNSLS------------GKIPRWLGNLTWLQYIIM 401
           + +      +L      L E +     + +             ++       + LQ +  
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

Query: 402 -PNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
               + E  +  +  Q + ++  D+  +  +
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 2e-31
 Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 85/416 (20%)

Query: 263 LRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNAL 322
              L+ +   +   F  P           +   +    +  E  + +  L +    + ++
Sbjct: 2   AATLATLPAPINQIF--PDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 323 DGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ---------- 372
            G     +  +  L+ L+L+ N +T   P       V L +L +  N +           
Sbjct: 60  QG-----IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 373 -EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
              LYLN +++S   P  L NLT +  + +  NH    +      +  L  L ++++ + 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 432 GSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 490
              P     L+              L    L+YN++    P  +  L+ L +     N +
Sbjct: 169 DVTP--IANLT-------------DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211

Query: 491 EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESY--SNSSSLDEQFEIFFSIE 548
               +  +  + +L  L + NN +   + P  + + L      +N               
Sbjct: 212 TD--ITPVANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTN--------------- 253

Query: 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608
                   QI +I                L+ L  L++  N++       + NL+++ +L
Sbjct: 254 --------QISDINAVKD-----------LTKLKMLNVGSNQISDISV--LNNLSQLNSL 292

Query: 609 NLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            L++N L          L ++ +L LS N +    P  L  L  ++    A   + 
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (302), Expect = 1e-29
 Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 75/381 (19%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
             +L      +N +         ++       L    +T  + +       ++  L ++ 
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAG 53

Query: 369 NNLQ-----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
             +            E L LN N ++   P  L NL  L  + +  N +          L
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNL 109

Query: 418 DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR----------DLSYNRLN 467
             L+ L ++++NIS   P       +  ++L  N     L             ++ +++ 
Sbjct: 110 TNLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527
              P  +  L+ L  L L +N +E   +  L  L  L       N +    P        
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP-------- 216

Query: 528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS 587
               +N + L+        I     N   +I ++                LS L+ L++ 
Sbjct: 217 ---VANMTRLNS-----LKI---GNN---KITDLSPLAN-----------LSQLTWLEIG 251

Query: 588 CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQL 647
            N++       + +LT+++ LN+  N +  +  S  +NL  + SL L+NN+L  +    +
Sbjct: 252 TNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 648 VELKTLEVFSVAYNNLSGEIP 668
             L  L    ++ N+++   P
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (286), Expect = 1e-27
 Identities = 73/364 (20%), Positives = 140/364 (38%), Gaps = 47/364 (12%)

Query: 79  ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRI 138
             +       L  +++    +            + +L +    +  S+   +  LT+L  
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT------QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEY 70

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA 198
           L+++ NQ+T     SPL +L  +  LY+  N      +L+ L N   L+  Y + + ++ 
Sbjct: 71  LNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTN---LRELYLNEDNIS- 123

Query: 199 EITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLE 258
           +I+   +LT    ++  L+L + +   ++    L +   L  + ++  K+    P   + 
Sbjct: 124 DISPLANLT----KMYSLNLGANH--NLSDLSPLSNMTGLNYLTVTESKVKDVTP---IA 174

Query: 259 NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNS 318
           N T L  LSL  + +      P+ S   L       N      P+     L SL + NN 
Sbjct: 175 NLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232

Query: 319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------ 372
           +  L     S L N+  L  L++  N ++      +      L+ L + +N +       
Sbjct: 233 ITDL-----SPLANLSQLTWLEIGTNQISD--INAVK-DLTKLKMLNVGSNQISDISVLN 284

Query: 373 -----EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 427
                  L+LNNN L  +    +G LT L  + +  NH+    P     L  +   D ++
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342

Query: 428 NNIS 431
             I 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (284), Expect = 2e-27
 Identities = 73/417 (17%), Positives = 151/417 (36%), Gaps = 87/417 (20%)

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
              L      +    P    +L       +    +T  +       L SI KL ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 172 QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKF 231
               S++ +   + L+    + N++  +I+   +L     +L+ L + +           
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQIT-DISPLSNLV----KLTNLYIGTN---------- 98

Query: 232 LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLD 291
                     +++ I          L+N T LR+L L  D++      P+ +  ++  L+
Sbjct: 99  ----------KITDISA--------LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLN 138

Query: 292 ISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +  N+    +   + ++  L  L +  + +  +     + + N+  L  L L+ N +   
Sbjct: 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-----TPIANLTDLYSLSLNYNQIEDI 192

Query: 350 IPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPRWLGNLTWLQY 398
            P  LA    +L       N +              L + NN ++   P  L NL+ L +
Sbjct: 193 SP--LA-SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 458
           + +  N +          L  L++L++  N IS    S  + LS             QL 
Sbjct: 248 LEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLS-------------QLN 290

Query: 459 R-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
              L+ N+L     + + GL+ L+ L L  N++    +  L  L+++   D +N  +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 5e-24
 Identities = 76/409 (18%), Positives = 138/409 (33%), Gaps = 85/409 (20%)

Query: 133 LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192
             +L  L    NQ+       P   L    +  L        ++ E L     +      
Sbjct: 2   AATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVA 52

Query: 193 NNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEF 252
             ++                                 + + +  +LE + L+  ++    
Sbjct: 53  GEKV------------------------------ASIQGIEYLTNLEYLNLNGNQITDIS 82

Query: 253 PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSL 312
           P   L N  KL  L +  + +       + +   L  L ++ +N     P+     L  +
Sbjct: 83  P---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPLAN---LTKM 134

Query: 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ 372
           Y  N   N    S  S L NM  L  L ++ + +    P  +A    +L SL+L+ N ++
Sbjct: 135 YSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIE 190

Query: 373 -----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421
                             N ++   P  + N+T L  + + NN +    P     L  L 
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246

Query: 422 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQL 480
            L+I  N IS    +    L+             +LK  ++  N+++      ++ LSQL
Sbjct: 247 WLEIGTNQISD--INAVKDLT-------------KLKMLNVGSNQISDISV--LNNLSQL 289

Query: 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYE 529
           + L L +N L  E +  +  L  L  L LS N++   I P    + +  
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 7e-10
 Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L + T+L Y T + +   I+ +  +A+    L +L I   ++  +       +   L  L
Sbjct: 195 LASLTSLHYFTAYVN--QITDITPVAN-MTRLNSLKIGNNKITDL---SPLANLSQLTWL 248

Query: 61  GMMSTRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG 118
                   + TN +  I+  + +  LK L++  + +   S       L +   L  L++ 
Sbjct: 249 E-------IGTNQISDINAVKDLTKLKMLNVGSNQISDISV------LNNLSQLNSLFLN 295

Query: 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           +N L       +  LT+L  L +S N +T      PL  L+ ++    +N  
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           L+ L  L+L+ N++    P  + NL ++  L +  N +     S   NL ++  L L+ +
Sbjct: 65  LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNED 120

Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
            ++   P  L  L  +   ++  N+   ++  
Sbjct: 121 NISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (304), Expect = 4e-30
 Identities = 53/384 (13%), Positives = 100/384 (26%), Gaps = 81/384 (21%)

Query: 281 IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILD 340
            H       L    +         +       Y  + +             N    QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 341 LSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------------EGLYLNNNSLSGKIPR 388
            +   L                +L L +  L             + + ++   L  ++P 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD 121

Query: 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHL 448
            +     L+ + +  N L   +P     L+ L+ L I        LP       +     
Sbjct: 122 TMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDA 175

Query: 449 SKNMLH-GQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQL 506
           S        L+   L +  +  S+P  +  L  L  L + ++ L   +   +  L +L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 507 LDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT 566
           LDL         PP F                                            
Sbjct: 234 LDLRGCTALRNYPPIFGG------------------------------------------ 251

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL 626
                       + L  L L     +  +P  I  LT+++ L+L     +  +PS  + L
Sbjct: 252 -----------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 627 KHVESLDLSNNKLNGKIPHQLVEL 650
                + +  +       H+ V  
Sbjct: 301 PANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (250), Expect = 4e-23
 Identities = 50/349 (14%), Positives = 98/349 (28%), Gaps = 58/349 (16%)

Query: 324 GSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLS 383
           GS      +    + L    +       + L+      Q    ++ N     +       
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRWHSAWR------ 51

Query: 384 GKIPRWLGNLTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS 442
                   N    Q        L+     +E         L++    +    P     LS
Sbjct: 52  ------QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 443 IKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501
                         L+   +    L   +PD +   + L  L L  N L   +   +  L
Sbjct: 105 -------------HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF-SIESPQGNVEKQIHE 560
           N+L+ L +        +P    +T     +    +L +   + +  I S   ++      
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNL-QSLRLEWTGIRSLPASIAN---- 204

Query: 561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP 620
                            L  L  L +  + L   + P I +L +++ L+L     +   P
Sbjct: 205 -----------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 621 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
             F     ++ L L +      +P  +  L  LE   +        +P 
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 50/307 (16%), Positives = 96/307 (31%), Gaps = 32/307 (10%)

Query: 242 ELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGH 300
              +   N     W   N+   +  +    +L      L   +      L++ +      
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 301 IPIEIGDV--LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGC 358
            P +   +  L  + +    +      +P ++     L+ L L+ N L   +P  +A   
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SL 149

Query: 359 VNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD 418
             L+ L++          L     S         L  LQ + +    +   +P     L 
Sbjct: 150 NRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQ 206

Query: 419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGL 477
            L+ L I ++ +S +L    H L              +L+  DL       + P    G 
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLP-------------KLEELDLRGCTALRNYPPIFGGR 252

Query: 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLYESYSN 533
           + L  LIL   +    + + +  L QL+ LDL        +P           +      
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

Query: 534 SSSLDEQ 540
            + LD+ 
Sbjct: 313 QAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 58/360 (16%), Positives = 108/360 (30%), Gaps = 80/360 (22%)

Query: 157 HLTSIEKLYLSNNHFQIPISLEPLFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSR 215
           H +  E LY   +      +L P  +  S+ +  Y  +        +  +          
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-------- 56

Query: 216 LSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLE-NNTKLRQLSLVNDSLG 274
                                    +E    +        L +        L L +  L 
Sbjct: 57  ----------------------NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94

Query: 275 GPFRLP--IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN 332
              + P        L  + I        +P  +      L     + N L  ++P+S+ +
Sbjct: 95  ---QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIAS 148

Query: 333 MKFLQILDLSNNHLTGEIPEHLA--------VGCVNLQSLALSNNNLQE----------- 373
           +  L+ L +       E+PE LA         G VNLQSL L    ++            
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208

Query: 374 -GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
             L + N+ LS  +   + +L  L+ + +         P  F     L+ L + D +   
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 433 SLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
           +LP   H L+             QL++ DL        +P  +  L     +++  +   
Sbjct: 268 TLPLDIHRLT-------------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 57/331 (17%), Positives = 99/331 (29%), Gaps = 54/331 (16%)

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
            Q  Y    +      W   N  + +I   +   L  +              L L +   
Sbjct: 35  WQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 172 Q-IPISLEPLFNHSRLKTFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
              P   +  F  S L+    D   L      + Q   L      L+R  L +       
Sbjct: 94  PQFP---DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE--TLTLARNPLRA------- 141

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
            P  +   + L  + +       E P  L   +       LVN                L
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----------------L 185

Query: 288 GMLDISNNNFRGHIPIEIGDV--LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
             L +     R  +P  I ++  L SL + N+ ++AL      ++ ++  L+ LDL    
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL----GPAIHHLPKLEELDLRGCT 240

Query: 346 LTGEIPEHLAVGCVNLQSLALSN-NNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
                P     G   L+ L L + +NL              +P  +  LT L+ + +   
Sbjct: 241 ALRNYPPIFG-GRAPLKRLILKDCSNLLT------------LPLDIHRLTQLEKLDLRGC 287

Query: 405 HLEGPIPVEFCQLDLLQILDISDNNISGSLP 435
                +P    QL    I+ +  +  +    
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 55/378 (14%), Positives = 106/378 (28%), Gaps = 75/378 (19%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
            H+ +  E L   GS+        ++  +    N   +                 +  + 
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWRQANSNNP 58

Query: 61  GMMSTRIALNTNFLQVISE-SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
            + +           ++ + + P    L L    L                HLQ + I +
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDA 113

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
             L   LP  M     L  L ++ N L  ++ +S +  L  + +L +             
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC---------- 160

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239
                 L        EL   +                                    +L+
Sbjct: 161 ----PELT-------ELPEPLAS-----------------------TDASGEHQGLVNLQ 186

Query: 240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISNNNF 297
           ++ L    +    P   + N   L+ L + N  L     L   IH   +L  LD+     
Sbjct: 187 SLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPL---SALGPAIHHLPKLEELDLRGCTA 241

Query: 298 RGHIPIEIGDV--LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLA 355
             + P   G    L  L L +   + L  ++P  +  +  L+ LDL        +P  +A
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDC--SNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 356 VGCVNLQSLALSNNNLQE 373
                   + +  +   +
Sbjct: 299 -QLPANCIILVPPHLQAQ 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (311), Expect = 5e-30
 Identities = 99/439 (22%), Positives = 168/439 (38%), Gaps = 65/439 (14%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
              +  +G  ++  ++    T+L  +  L      +    S   + +L ++ ++  SNN 
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQ 79

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                 + PL N ++L     +NN++  +IT   +LT     L+ L+L +   + +T   
Sbjct: 80  LT---DITPLKNLTKLVDILMNNNQIA-DITPLANLT----NLTGLTLFN---NQITDID 128

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
            L +  +L  +ELS   ++       L   T L+QLS  N         P+ +   L  L
Sbjct: 129 PLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK---PLANLTTLERL 182

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
           DIS+N       +     L SL   NN ++ +     + LG +  L  L L+ N L    
Sbjct: 183 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQLKD-- 235

Query: 351 PEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPRWLGNLTWLQYI 399
              LA    NL  L L+NN +              L L  N +S   P  L  LT L  +
Sbjct: 236 IGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 400 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 459
            +  N LE   P     L  L  L +  NNIS   P     L+             +L+R
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-------------KLQR 335

Query: 460 -DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI 518
                N+++      +  L+ ++ L  GHN +    L  L  L ++  L L++       
Sbjct: 336 LFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAP 391

Query: 519 PPCFDNTTLYESYSNSSSL 537
                N ++  +  N +  
Sbjct: 392 VNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 4e-29
 Identities = 102/519 (19%), Positives = 177/519 (34%), Gaps = 75/519 (14%)

Query: 15  SSLHISLLQSIASIFP--SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTN 72
            S  I+    I  IF   +L     +      V           +  L      I     
Sbjct: 4   GSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG 63

Query: 73  FLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTN 132
                 E + +L  ++ S + L   +       L +   L ++ + +N +    P  + N
Sbjct: 64  V-----EYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITP--LAN 110

Query: 133 LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192
           LT+L  L + +NQ+T      PL +LT++ +L LS+N       +  L   + L+     
Sbjct: 111 LTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFG 164

Query: 193 NNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEF 252
           N      +T    L      L RL +SS     V+    L    +LE++  ++ +++   
Sbjct: 165 NQ-----VTDLKPLANLT-TLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDIT 215

Query: 253 PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSL 312
           P   L   T L +LSL  + L       + S   L  LD++NN      P+     L  L
Sbjct: 216 P---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270

Query: 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ 372
            L  N ++ +     S L  +  L  L+L+ N L    P        NL  L L  NN+ 
Sbjct: 271 KLGANQISNI-----SPLAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNIS 322

Query: 373 -----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421
                      + L+  NN +S      L NLT + ++   +N +    P     L  + 
Sbjct: 323 DISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 422 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI-PDWVDGLSQL 480
            L ++D   + +  +    +SI                +   N     I P  +      
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIP---------------NTVKNVTGALIAPATISDGGSY 423

Query: 481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
           +   +  N       V     +Q   +        G + 
Sbjct: 424 TEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 9e-28
 Identities = 98/534 (18%), Positives = 169/534 (31%), Gaps = 142/534 (26%)

Query: 131 TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFY 190
           T L       +    +T ++       L  +  L       +   S++ +   + L    
Sbjct: 21  TALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 74

Query: 191 ADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
             NN                 QL+ ++              L +   L  + +++ ++  
Sbjct: 75  FSNN-----------------QLTDIT-------------PLKNLTKLVDILMNNNQIAD 104

Query: 251 EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP 310
             P   L N T L  L+L N+ +      P+ +   L  L++S+N       +     L 
Sbjct: 105 ITP---LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQ 159

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            L   N        +    L N+  L+ LD+S+N ++      LA     L +L      
Sbjct: 160 QLSFGNQV------TDLKPLANLTTLERLDISSNKVSD--ISVLA----KLTNL------ 201

Query: 371 LQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 430
             E L   NN +S   P  LG LT L  + +  N L+         L  L  LD+++N I
Sbjct: 202 --ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI 255

Query: 431 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 490
           S +L        + ++              L  N+++   P  + GL+ L++L L  N L
Sbjct: 256 S-NLAPLSGLTKLTEL-------------KLGANQISNISP--LAGLTALTNLELNENQL 299

Query: 491 EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
           E   +  +  L  L  L L  N                                      
Sbjct: 300 ED--ISPISNLKNLTYLTLYFN-------------------------------------- 319

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610
                  I +I   ++           L+ L  L    NK+       + NLT I  L+ 
Sbjct: 320 ------NISDISPVSS-----------LTKLQRLFFYNNKVSDVSS--LANLTNINWLSA 360

Query: 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            HN +  L P   +NL  +  L L++        +    +            L 
Sbjct: 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (267), Expect = 2e-24
 Identities = 92/433 (21%), Positives = 167/433 (38%), Gaps = 64/433 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +    NL  +    S+  ++ +  + +    L ++ ++  ++  +       +  +L  L
Sbjct: 64  VEYLNNLTQINF--SNNQLTDITPLKN-LTKLVDILMNNNQIADI---TPLANLTNLTGL 117

Query: 61  GMMSTRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG 118
                   L  N +  I   +++ +L  L LS +T+   S+      L     LQ+L   
Sbjct: 118 -------TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA------LSGLTSLQQLSF- 163

Query: 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLE 178
            N +    P  + NLT+L  LD+SSN+++     S L  LT++E L  +NN       + 
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS---DIT 215

Query: 179 PLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL 238
           PL   + L     + N+L  +I    SLT     L+ L L++   + ++    L     L
Sbjct: 216 PLGILTNLDELSLNGNQLK-DIGTLASLT----NLTDLDLAN---NQISNLAPLSGLTKL 267

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR 298
             ++L   +++   P   L   T L  L L  + L      PI + K L  L +  NN  
Sbjct: 268 TELKLGANQISNISP---LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNIS 322

Query: 299 GHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGC 358
              P+     L  L+ +NN +     S  SSL N+  +  L   +N ++   P       
Sbjct: 323 DISPVSSLTKLQRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTP------- 370

Query: 359 VNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD 418
             L +L      + + L LN+ + +     +  N++    +      L  P         
Sbjct: 371 --LANL----TRITQ-LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGG 421

Query: 419 LLQILDISDNNIS 431
                DI+ N  S
Sbjct: 422 SYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 67/364 (18%), Positives = 124/364 (34%), Gaps = 83/364 (22%)

Query: 306 GDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA 365
           G +  +    +  +N +      +   +       L   ++T  + +        + +L 
Sbjct: 1   GPLGSATITQDTPINQI-----FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQ 52

Query: 366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 425
                +         S+ G     +  L  L  I   NN L    P     L  L  + +
Sbjct: 53  ADRLGI--------KSIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 97

Query: 426 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLI 484
           ++N I+   P     L+              L    L  N++    P  +  L+ L+ L 
Sbjct: 98  NNNQIADITP--LANLT-------------NLTGLTLFNNQITDIDP--LKNLTNLNRLE 140

Query: 485 LGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF 544
           L  N +    +  L  L  LQ L   N                 +  +N ++L E+ +I 
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQVTD------------LKPLANLTTL-ERLDI- 184

Query: 545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR 604
                   N   ++ +I                L+ L  L  + N++    P  +G LT 
Sbjct: 185 ------SSN---KVSDISVLAK-----------LTNLESLIATNNQISDITP--LGILTN 222

Query: 605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           +  L+L+ N L  +   T ++L ++  LDL+NN+++   P  L  L  L    +  N +S
Sbjct: 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

Query: 665 GEIP 668
              P
Sbjct: 279 NISP 282

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 3e-28
 Identities = 72/417 (17%), Positives = 133/417 (31%), Gaps = 94/417 (22%)

Query: 278 RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQ 337
           ++    +    +L++  +     +P  +   + +L + +N++     S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT----SLPALPPE---LR 84

Query: 338 ILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE------GLYLNNNSLSGKIPRWLG 391
            L++S N LT  +P     G + L   +    +L         L++  N L+  +P    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 451
            L  L    + +N L   +P    +L     L   +N ++ SLP                
Sbjct: 142 GLQELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPMLP------------- 180

Query: 452 MLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL-CELNQLQLLDL 509
                L+   +S N+L  S+P      S+L  L   +N L       L    + L+ L +
Sbjct: 181 ---SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-----SLPALPSGLKELIV 228

Query: 510 SNNNLHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKN 568
           S N L   +P        L  S +  +SL                               
Sbjct: 229 SGNRLTS-LPVLPSELKELMVSGNRLTSLPML---------------------------- 259

Query: 569 IVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628
                     S L  L +  N+L   +P  + +L+   T+NL  N L          +  
Sbjct: 260 ---------PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 685
                    + +        E + L     A + L        A    ++    E N
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (261), Expect = 2e-23
 Identities = 70/452 (15%), Positives = 127/452 (28%), Gaps = 119/452 (26%)

Query: 65  TRIALNTNFLQVISESMP-SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR 123
             + +  + L  + + +P  +  L +       N+   L         L+ L +  N L 
Sbjct: 43  AVLNVGESGLTTLPDCLPAHITTLVIPD-----NNLTSLPALPP---ELRTLEVSGNQLT 94

Query: 124 GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNH 183
            SLP     L  L I       L            + + KL++  N      SL  L   
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT---SLPVLPPG 142

Query: 184 SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243
             L+     +N+L        SL A   +L +L                           
Sbjct: 143 --LQELSVSDNQLA-------SLPALPSELCKLWAY------------------------ 169

Query: 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPI 303
                          NN    QL+ +     G           L  L +S+N     +P 
Sbjct: 170 ---------------NN----QLTSLPMLPSG-----------LQELSVSDNQLA-SLPT 198

Query: 304 EIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363
              + L  L+ +NN +     S+P+       L+ L +S N LT  +P   +     L+ 
Sbjct: 199 LPSE-LYKLWAYNNRLT----SLPALPSG---LKELIVSGNRLT-SLPVLPS----ELKE 245

Query: 364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQIL 423
           L +S N L              +P     L  L    +  N L   +P     L     +
Sbjct: 246 LMVSGNRLTS------------LPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTV 289

Query: 424 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHL 483
           ++  N +S            +++  +       ++ D++               +     
Sbjct: 290 NLEGNPLS-ERTLQAL----REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 484 ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
                    +      + +      L  + L 
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 74/406 (18%), Positives = 124/406 (30%), Gaps = 101/406 (24%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
               L  L + G+ L      S+  + P L  LSI    +  +      P    L  L  
Sbjct: 79  LPPELRTLEVSGNQLT-----SLPVLPPGLLELSIFSNPLTHL---PALP--SGLCKLW- 127

Query: 63  MSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDL 122
                 +  N L  +    P L+ LS+S      N    L         L +L+  +N L
Sbjct: 128 ------IFGNQLTSLPVLPPGLQELSVSD-----NQLASLPALPS---ELCKLWAYNNQL 173

Query: 123 RGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF-QIPISLEPLF 181
             SLP      + L+ L VS NQL  S+ + P    + + KL+  NN    +P       
Sbjct: 174 T-SLP---MLPSGLQELSVSDNQLA-SLPTLP----SELYKLWAYNNRLTSLPALP---- 220

Query: 182 NHSRLKTFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL 238
             S LK      N L       ++   L     +L+ L                      
Sbjct: 221 --SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL---------------------- 256

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISNNN 296
                         P       + L  LS+  + L    RLP  +        +++  N 
Sbjct: 257 --------------PMLP----SGLLSLSVYRNQLT---RLPESLIHLSSETTVNLEGNP 295

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
                 ++    + S   ++  +   D +  S+    + L     + + L        A 
Sbjct: 296 LS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAP 352

Query: 357 --------GCVNLQSLALSNNNLQEGL-YLNNNSLSGKIPRWLGNL 393
                      N  + +L  + L E   ++ +     +I  WL  L
Sbjct: 353 ADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQL 398

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (296), Expect = 4e-28
 Identities = 69/379 (18%), Positives = 128/379 (33%), Gaps = 65/379 (17%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +      F   +P  I      L L  N +  L+        +   L+ L+L+ N ++  
Sbjct: 16  VLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVS-A 70

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP 409
           +         NL++L L +N L+    +     +G        L+ L  + +  N +   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKL---IPLGVFTG--------LSNLTKLDISENKIVIL 119

Query: 410 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNG 468
           +   F  L  L+ L++ DN++       F  L+              L++  L    L  
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-------------SLEQLTLEKCNLTS 166

Query: 469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTL 527
              + +  L  L  L L H N+          L +L++L++S+      + P C     L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS 587
                                         +  +     ++         L  L  L+LS
Sbjct: 227 TSLSITHC---------------------NLTAVPYLAVRH---------LVYLRFLNLS 256

Query: 588 CNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ 646
            N  I  I   +   L R+Q + L    L  + P  F  L ++  L++S N+L   +   
Sbjct: 257 YNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 647 LVE-LKTLEVFSVAYNNLS 664
           +   +  LE   +  N L+
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (266), Expect = 2e-24
 Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 33/259 (12%)

Query: 285 KRLGMLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDL 341
             L  L+++ N     +     + L +L    L +N +  +   + + L N   L  LD+
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN---LTKLDI 111

Query: 342 SNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPR 388
           S N +   + +++     NL+SL + +N+L              E L L   +L+     
Sbjct: 112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170

Query: 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL-PSCFHPLSIKQVH 447
            L +L  L  + + + ++       F +L  L++L+IS      ++ P+C + L++  + 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 448 LSKNMLH----------GQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV 496
           ++   L             L+  +LSYN ++      +  L +L  + L    L      
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 497 QLCELNQLQLLDLSNNNLH 515
               LN L++L++S N L 
Sbjct: 291 AFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 68/363 (18%), Positives = 126/363 (34%), Gaps = 77/363 (21%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P   + L +G N ++        +   L  L+++ N ++ ++      +L ++  L L +
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           N  ++ I L      S L       N++         L    FQ                
Sbjct: 90  NRLKL-IPLGVFTGLSNLTKLDISENKIV-------ILLDYMFQ---------------- 125

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
                  ++L+++E+    +              L QL+L                    
Sbjct: 126 -----DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTL-------------------- 159

Query: 289 MLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
                  N    IP E    L  L    L + ++NA+       L     L++L++S+  
Sbjct: 160 ----EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR---LKVLEISHWP 211

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGN 392
               +  +   G  NL SL++++ NL                L L+ N +S      L  
Sbjct: 212 YLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 451
           L  LQ I +    L    P  F  L+ L++L++S N ++    S FH + +++ + L  N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 452 MLH 454
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 71/379 (18%), Positives = 126/379 (33%), Gaps = 104/379 (27%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             +F +LE L L+ +   +S ++  A                        F +  +L  L
Sbjct: 52  FASFPHLEELELNEN--IVSAVEPGA------------------------FNNLFNLRTL 85

Query: 61  GMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
           G       L +N L++I       + +L  L +S + +      +LD       +L+ L 
Sbjct: 86  G-------LRSNRLKLIPLGVFTGLSNLTKLDISENKI----VILLDYMFQDLYNLKSLE 134

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPIS 176
           +G NDL        + L SL  L +    LT SI +  L HL  +  L L + +    I 
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINA-IR 192

Query: 177 LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH 236
                   RLK     +      +            L+ LS++                 
Sbjct: 193 DYSFKRLYRLKVLEISHWPY---LDTMTPNCLYGLNLTSLSITHC--------------- 234

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
                 L+ +      P   + +   LR L+L              S+  +    I  + 
Sbjct: 235 -----NLTAV------PYLAVRHLVYLRFLNL--------------SYNPIS--TIEGSM 267

Query: 297 FRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEH 353
                       L  L    L    +  ++   P +   + +L++L++S N LT  + E 
Sbjct: 268 LHE---------LLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 354 LAVGCVNLQSLALSNNNLQ 372
           +     NL++L L +N L 
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 54/258 (20%)

Query: 420 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLS 478
            ++LD+  N I       F                  L+  +L+ N ++   P   + L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP-------------HLEELELNENIVSAVEPGAFNNLF 80

Query: 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLYESYSNS 534
            L  L L  N L+   L     L+ L  LD+S N +   +   F +     +L    ++ 
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 535 SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594
             +  +   F                                 L+ L  L L     +  
Sbjct: 141 VYISHR--AFSG-------------------------------LNSLEQLTLEKCN-LTS 166

Query: 595 IPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653
           IP +   +L  +  L L H ++  +   +F  L  ++ L++S+      +    +    L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 654 EVFSVAYNNLSGEIPEWT 671
              S+ + NL+  +P   
Sbjct: 227 TSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
           +P  I   T  + L+L  N +  L    F++  H+E L+L+ N ++   P     L  L 
Sbjct: 26  VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 655 VFSVAYNNLSGEIPE 669
              +  N L   IP 
Sbjct: 84  TLGLRSNRLK-LIPL 97

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  118 bits (297), Expect = 5e-28
 Identities = 100/479 (20%), Positives = 166/479 (34%), Gaps = 63/479 (13%)

Query: 69  LNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR 123
           L+ N +  +       +  L+ L LS++ + +     LD  +      L+ L +  N L+
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 124 GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL-FN 182
            ++      + SLR LD+S N            +LT +  L LS   F+    L+ L   
Sbjct: 114 -NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVA 167

Query: 183 HSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242
           H  L     D    + +  ++ SL  PN  +  L         V     +   + L  ++
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV---NALGHLQ 224

Query: 243 LSHIKMNGEF------PTWLLENNTKLRQLSLVNDSLGGPFRLPIHS---HKRLGMLDIS 293
           LS+IK+N E           L     L  ++L +        + +      + +  L+I 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 294 NNNFRGHIPIEIGD----VLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           N      I  E        L SL + +        S  +       + I  LS +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-F 343

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP 409
           I         +   L               N  +  + +    L  LQ +I+  N L+  
Sbjct: 344 IHMVCPPSPSSFTFL-----------NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN- 391

Query: 410 IPVEFCQLDLLQILDISDNNISGSLPS------CFHPLSIKQVHLSKNMLHG-------- 455
                     +  L+  D +++ SL S      C    SI  ++LS NML G        
Sbjct: 392 FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450

Query: 456 QLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNN 513
           ++K  DL  NR+  SIP  V  L  L  L +  N L+         L  LQ + L +N 
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 82/447 (18%), Positives = 158/447 (35%), Gaps = 60/447 (13%)

Query: 5   TNLEYLTLHGSSLHISLLQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
            +LEYL +  +      LQ+I      SL++L +S+ + + +   + F +   L  LG  
Sbjct: 100 QDLEYLDVSHNR-----LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG-- 152

Query: 64  STRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR 123
                L+    +     +  + +L LS   L                 L   +I   +  
Sbjct: 153 -----LSAAKFR--QLDLLPVAHLHLSCILL----------------DLVSYHIKGGETE 189

Query: 124 GSLPWCMTNLTSLRIL----DVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
                 + N T L ++     + S Q+  S+++   + L++I+      N  ++   L  
Sbjct: 190 S---LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK--LNDENCQRLMTFLSE 244

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS-GYEDGVTFPKFLYHQHDL 238
           L     L      + E   + +           +  L++ +    + +   +F Y +  L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 239 ETVELSHIKMNG--EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
           +++ + H+K          L     ++    L          +   S      L+ + N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALD--GSIPSSLGNMKFLQILDLSNNHLTGEIPEHL 354
           F      +    L  L       N L     +     NM  L+ LD+S N L     +  
Sbjct: 365 F-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 355 AVGCVNLQSLALSNNNLQEG-----------LYLNNNSLSGKIPRWLGNLTWLQYIIMPN 403
                ++  L LS+N L              L L+NN +   IP+ + +L  LQ + + +
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482

Query: 404 NHLEGPIPVE-FCQLDLLQILDISDNN 429
           N L+  +P   F +L  LQ + + DN 
Sbjct: 483 NQLKS-VPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 75/399 (18%), Positives = 136/399 (34%), Gaps = 42/399 (10%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +D SN N   H+P ++     +L L  NS++ L     S L     L++L LS+N +   
Sbjct: 36  VDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSE---LRVLRLSHNRIR-S 90

Query: 350 IPEHLAVGCVNLQSLALSNNNLQE----------GLYLNNNSL-SGKIPRWLGNLTWLQY 398
           +  H+ +   +L+ L +S+N LQ            L L+ N      + +  GNLT L +
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQI-LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
           + +          +    L L  I LD+   +I G         +   +HL         
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL--------- 201

Query: 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGP 517
                 N L     +    ++ L HL L +  L  E   +L           +  N+   
Sbjct: 202 --VFHPNSLFSVQVN--MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 518 IPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKV 577
                   ++           E   I+    + + + E+  +      +  I ++     
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 578 LSLLSG----------LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627
           L                 LS +           + +    LN + N     +    S LK
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377

Query: 628 HVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNNLS 664
            +++L L  N L    K+      + +LE   V+ N+L+
Sbjct: 378 RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVH-GQGFPHFKSLEHLGMM 63
           ++  +L    +        S+     +LK L     + NG+ +  +     K++  L  +
Sbjct: 353 SSFTFLNFTQNVF----TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 64  STRI-ALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDL 122
              + +LN++          S+  L+LS + L   +  +     C P  ++ L + +N +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNML---TGSVFR---CLPPKVKVLDLHNNRI 462

Query: 123 RGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
             S+P  +T+L +L+ L+V+SNQL  S+       LTS++ ++L +N + 
Sbjct: 463 M-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 9/222 (4%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVV-HGQGFPHFKSLEHL 60
                   L +    +  +  +    +F       + Y  +  +    +      +    
Sbjct: 244 ELTRGPTLLNVTLQHIETTW-KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG-LCSPVHLQELYIGS 119
            + S  I    N + + S+      +  ++   L  + +  +      SP     L    
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTG-SISSSPLIHLTSIEKLYLSNNHFQIPISLE 178
           N    S+    + L  L+ L +  N L      +    +++S+E L +S N         
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 179 PLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
                  +      +N L   +     L     ++  L L +
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVF--RCLPP---KVKVLDLHN 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 3e-27
 Identities = 92/477 (19%), Positives = 164/477 (34%), Gaps = 53/477 (11%)

Query: 69  LNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR 123
           ++ N++  +      S+  L+ L +S+     N  + LD  +      L+ L +  N L 
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISH-----NRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 124 GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNH 183
             +        +L+ LD+S N            +++ ++ L LS  H +   S+ P+ + 
Sbjct: 83  -KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHL 138

Query: 184 SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243
           +  K           +      L   N +   +   +  E        +    +LE   +
Sbjct: 139 NISKVLLVLGETYGEKE-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 244 SHIKMNGEFPTWL-----LENNTKLRQLSLVNDSLGGPF---RLPIHSHKRLGMLDISNN 295
             +  + +   +L     L+ N KL  L+L N           L +  H  +    ISN 
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 296 NFRGHIPIE----IGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIP 351
             +G +        G  L +L +     +               + I + + +     + 
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVH 316

Query: 352 EHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE--GP 409
                       L  SNN L             +     G+LT L+ +I+  N L+    
Sbjct: 317 MLCPSKISPFLHLDFSNNLLT--------DTVFENC---GHLTELETLILQMNQLKELSK 365

Query: 410 IPVEFCQLDLLQILDISDNNISGSLP--SCFHPLSIKQVHLSKN--------MLHGQLKR 459
           I     Q+  LQ LDIS N++S       C    S+  +++S N         L  ++K 
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV 425

Query: 460 -DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
            DL  N++  SIP  V  L  L  L +  N L+         L  LQ + L  N   
Sbjct: 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (267), Expect = 2e-24
 Identities = 102/538 (18%), Positives = 179/538 (33%), Gaps = 88/538 (16%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
                 L I  N +       + +L+ LRIL +S N++   +  S       +E L LS+
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNA--EITQSHSLTAPNFQLSRLSLSSGYEDGV 226
           N     IS  P  N   LK      N  +A     +  +++    QL  L LS+ + +  
Sbjct: 79  NKLVK-ISCHPTVN---LKHLDLSFNAFDALPICKEFGNMS----QLKFLGLSTTHLEKS 130

Query: 227 TFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR 286
           +     +       + L       E P  L   +     L +V  +      +   S K 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
           +  L++SN                   +  ++  +   SI + L     L  L L+N   
Sbjct: 189 VANLELSNIKC----------------VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 347 TGEIPEHL--AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
           T      +   V    +   ++SN  LQ  L   +   SG       +L  L    + ++
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT------SLKALSIHQVVSD 286

Query: 405 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSY 463
               P    +     + I + + +        C   +S                  D S 
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS-------------PFLHLDFSN 333

Query: 464 NRLNGSIPDWVDGLSQLSHLILGHNNLE--GEVLVQLCELNQLQLLDLSNNNLHGPIPPC 521
           N L  ++ +    L++L  LIL  N L+   ++     ++  LQ LD+S N++       
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 522 -FDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLS 579
                 +L     +S+ L +   IF  +                                
Sbjct: 394 DCSWTKSLLSLNMSSNILTD--TIFRCL------------------------------PP 421

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
            +  LDL  NK+   IP Q+  L  +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 68/398 (17%), Positives = 154/398 (38%), Gaps = 28/398 (7%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +D S N    H+P ++      L +  N ++ L     S + ++  L+IL +S+N +   
Sbjct: 5   VDRSKNGLI-HVPKDLSQKTTILNISQNYISELW---TSDILSLSKLRILIISHNRIQ-Y 59

Query: 350 IPEHLAVGCVNLQSLALSNNNLQE----------GLYLNNNSL-SGKIPRWLGNLTWLQY 398
           +   +      L+ L LS+N L +           L L+ N+  +  I +  GN++ L++
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQI-LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
           + +   HLE    +    L++ ++ L + +       P      + + +H+     + + 
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT-NKEF 178

Query: 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLS-NNNLHG 516
              L  +    +  +  +    L      +       L    +L+ L L ++    N   
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576
            I     +TT+   Y + S++  Q ++ F      G   K +         ++    Q  
Sbjct: 239 RILQLVWHTTV--WYFSISNVKLQGQLDFRDFDYSGTSLKALS--IHQVVSDVFGFPQSY 294

Query: 577 V---LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD 633
           +    S ++  + + +            ++    L+ S+N L   +     +L  +E+L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 634 LSNNKLN--GKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
           L  N+L    KI     ++K+L+   ++ N++S +  +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 6e-17
 Identities = 77/442 (17%), Positives = 147/442 (33%), Gaps = 48/442 (10%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMS 64
             LEYL L  + L             +LK+L +S+   + +   + F +   L+ LG   
Sbjct: 69  QELEYLDLSHNKLVKISCHP----TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG--- 121

Query: 65  TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG 124
               L+T  L+    S+  + +L++S   L    +                 +       
Sbjct: 122 ----LSTTHLE--KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184
                + +++   + ++  + +   +  +   +  SI     +N                
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK-------------- 221

Query: 185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGV-TFPKFLYHQHDLETVEL 243
            L     +N E              +  +   S+S+    G   F  F Y    L+ + +
Sbjct: 222 -LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280

Query: 244 SHIKMN--GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHI 301
             +  +  G   +++ E  + +   +           L          LD SNN      
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDT 339

Query: 302 PIEIGDVLPSLYLFNNSMNALDGSIPSSLG---NMKFLQILDLSNNHLTGEIPEHLAVGC 358
             E    L  L      MN L   +         MK LQ LD+S N ++ +  +      
Sbjct: 340 VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 359 VNLQSLALSNNNLQEG-----------LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
            +L SL +S+N L +            L L++N +   IP+ +  L  LQ + + +N L+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

Query: 408 GPIPVEFCQLDLLQILDISDNN 429
                 F +L  LQ + +  N 
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 66/411 (16%), Positives = 135/411 (32%), Gaps = 44/411 (10%)

Query: 281 IHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQ 337
           I S  +L +L IS+N  + ++ I +         L L +N +  +      S      L+
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKI------SCHPTVNLK 93

Query: 338 ILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG--------LYLNNNSLSGKIPRW 389
            LDLS N                L+ L LS  +L++                + G+    
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 449
             +   LQ     + H+  P   EF  +  + +  +++  +S              + + 
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 450 KNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL----------C 499
             +       +L+ N +  +   ++  L  + H  + + ++    L              
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 500 ELNQLQLLDLSNNNLHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
            L  L +  + ++    P    ++  + +       S       +  S  SP        
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF------- 326

Query: 559 HEIFEFTTKNIVYIYQG--KVLSLLSGLDLSCNKL--IGPIPPQIGNLTRIQTLNLSHND 614
               +F+   +          L+ L  L L  N+L  +  I      +  +Q L++S N 
Sbjct: 327 -LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 615 L-IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           +         S  K + SL++S+N L   I   L     ++V  +  N + 
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 69/410 (16%), Positives = 125/410 (30%), Gaps = 48/410 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             N + L++L L  + L         S    + +L+IS   +            + L+  
Sbjct: 111 FGNMSQLKFLGLSTTHLE-------KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
              S  I   TN        +      +L  S +             S            
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS------------ 211

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            L         +  +L  ++ + N          L+  T++    +SN   Q  +     
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFI---RILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 181 -FNHSRLKTFYADNNELNAEITQSHSL--TAPNFQLSRLSLSSGYEDGVTFPKFLYHQHD 237
            ++ + LK         +        +     N  +   ++S      +  P  +     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI---SP 325

Query: 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG--GPFRLPIHSHKRLGMLDISNN 295
              ++ S+  +  +       + T+L  L L  + L             K L  LDIS N
Sbjct: 326 FLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 296 NFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLA 355
           +              SL   N S N L  +I   L     +++LDL +N +   IP+ + 
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVV 441

Query: 356 VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR-WLGNLTWLQYIIMPNN 404
                LQ L +++N L+             +P      LT LQ I +  N
Sbjct: 442 -KLEALQELNVASNQLKS------------VPDGIFDRLTSLQKIWLHTN 478

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (285), Expect = 3e-27
 Identities = 85/398 (21%), Positives = 138/398 (34%), Gaps = 76/398 (19%)

Query: 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LY 313
           L+ +     + +   +    F     +     ++   N+  R  +P  + D       L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373
           L +  +  +D     +      +Q L +  N +   +P H+      L  L L  N+L  
Sbjct: 76  LNDLQIEEID---TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 374 GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISG 432
                  SL   I     N   L  + M NN+LE  I  + F     LQ L +S N ++ 
Sbjct: 131 -------SLPRGI---FHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 179

Query: 433 SLPSCFHPLSIKQVHLSKNML-----HGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILG 486
              S    L     ++S N+L        ++  D S+N +N  +        +L+ L L 
Sbjct: 180 VDLSLIPSL--FHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQ 234

Query: 487 HNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLYESYSNSSSLDEQFE 542
           HNNL       L     L  +DLS N L   +   F        LY S +   +L+    
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG- 291

Query: 543 IFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNL 602
                                            + +  L  LDLS N L+  +       
Sbjct: 292 ---------------------------------QPIPTLKVLDLSHNHLLH-VERNQPQF 317

Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
            R++ L L HN ++ L  ST   LK+   L LS+N  +
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 2e-26
 Identities = 58/370 (15%), Positives = 123/370 (33%), Gaps = 76/370 (20%)

Query: 312 LYLFNNSMNALDGSIPSSL--GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
              ++  ++     +        +   +I+   N+ +  ++P  L      ++ L L++ 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 370 NLQ-------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ 416
            ++             + LY+  N++    P    N+  L  +++  N L       F  
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 417 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVD 475
              L  L +S+NN+       F   +              L+   LS NRL   +     
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATT-------------SLQNLQLSSNRLT-HVDL--S 183

Query: 476 GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSS 535
            +  L H  + +N L       L     ++ LD S+N+++    P     T+ +   N  
Sbjct: 184 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-- 236

Query: 536 SLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPI 595
                                 + +                    L  +DLS N+ +  I
Sbjct: 237 ---------------------NLTDTAWLLN-----------YPGLVEVDLSYNE-LEKI 263

Query: 596 PPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
                  + R++ L +S+N  +  +      +  ++ LDLS+N L   +     +   LE
Sbjct: 264 MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321

Query: 655 VFSVAYNNLS 664
              + +N++ 
Sbjct: 322 NLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 2e-25
 Identities = 82/415 (19%), Positives = 150/415 (36%), Gaps = 76/415 (18%)

Query: 102 LDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI 161
           +D  L       +++I          +    L + +I+   ++ +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 162 EKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSG 221
           E L L++   +  I          ++  Y   N                  +  L     
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFN-----------------AIRYLP---- 109

Query: 222 YEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPI 281
                  P    +   L  + L    ++   P  +  N  KL  LS+ N++L        
Sbjct: 110 -------PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 282 HSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDL 341
            +   L  L +S+N    H+ +    ++PSL+  N S N L     S+L     ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 342 SNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIM 401
           S+N +   +   +    V L  L L +NNL +               WL N   L  + +
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDL 255

Query: 402 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-D 460
             N LE  +   F ++  L+ L IS+N +  +L     P+               LK  D
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP-------------TLKVLD 301

Query: 461 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
           LS+N L   +        +L +L L HN++     ++L   + L+ L LS+N+  
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 94/406 (23%)

Query: 54  FKSLEHLGMMS-TRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCS 108
           +   E + + +   +    + ++ +  +       ++ L+L+   +      I       
Sbjct: 36  YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI----EEIDTYAFAY 91

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
              +Q+LY+G N +R   P    N+  L +L +  N L+ S+      +   +  L +SN
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           N+ +  I  +     + L+     +N                 +L+ + LS         
Sbjct: 151 NNLER-IEDDTFQATTSLQNLQLSSN-----------------RLTHVDLS-------LI 185

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
           P        L    +S+  ++       L     + +L                      
Sbjct: 186 PS-------LFHANVSYNLLS------TLAIPIAVEELDA-------------------- 212

Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
               S+N+    +   +   L  L L +N++        + L N   L  +DLS N L  
Sbjct: 213 ----SHNSIN-VVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELE- 261

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG 408
           +I  H  V    L+ L +SNN L              +  +   +  L+ + + +NHL  
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLVA------------LNLYGQPIPTLKVLDLSHNHLLH 309

Query: 409 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
            +     Q D L+ L +  N+I     S  H L  K + LS N   
Sbjct: 310 -VERNQPQFDRLENLYLDHNSIVTLKLSTHHTL--KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 60/324 (18%), Positives = 120/324 (37%), Gaps = 40/324 (12%)

Query: 360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG-----NLTWLQYIIMPNNHLEGPIPVEF 414
                   ++NLQ      +  +  +            L   + +   N+ +        
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 415 CQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH----------GQLKR-DLS 462
                +++L+++D  I       F    +I+++++  N +             L    L 
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 463 YNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPC 521
            N L+ S+P  +     +L+ L + +NNLE            LQ L LS+N L       
Sbjct: 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 522 FDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSL 580
             +      SY+  S+L     +                E  + +  +I  + +G V   
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAV----------------EELDASHNSINVV-RGPVNVE 227

Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
           L+ L L  N L       + N   +  ++LS+N+L  ++   F  ++ +E L +SNN+L 
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 641 GKIPHQLVELKTLEVFSVAYNNLS 664
             +      + TL+V  +++N+L 
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 7e-17
 Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 72/376 (19%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
              N + +T   S++   L  ++   F  ++ L+++  ++   +    F +  +++ L  
Sbjct: 43  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY- 99

Query: 63  MSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYI 117
                 +  N ++ +      ++P L  L L       N    L RG+      L  L +
Sbjct: 100 ------MGFNAIRYLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIFHNTPKLTTLSM 148

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISL 177
            +N+L           TSL+ L +SSN+LT       L  + S+    +S N       L
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNL------L 198

Query: 178 EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ-LSRLSLSSGYEDGVTFPKFLYHQH 236
             L     ++   A +N +N        +  P    L+ L L     + +T   +L +  
Sbjct: 199 STLAIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQH---NNLTDTAWLLNYP 248

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
            L  V+LS+ ++  +          +L +L +                        SNN 
Sbjct: 249 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYI------------------------SNNR 283

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
               + +     +P+L + + S N L   +  +      L+ L L +N +   +      
Sbjct: 284 LV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST-- 337

Query: 357 GCVNLQSLALSNNNLQ 372
               L++L LS+N+  
Sbjct: 338 -HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 35/235 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             N   L  L L  + L  SL + I    P L  LS+S   +   +    F    SL++L
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 170

Query: 61  GMMSTRIA--------------LNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106
            + S R+               ++ N L  ++    +++ L  S+     NS  ++   +
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASH-----NSINVVRGPV 224

Query: 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
                L  L +  N+L     W + N   L  +D+S N+L   I   P + +  +E+LY+
Sbjct: 225 NV--ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 279

Query: 167 SNNHFQ-IPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
           SNN    + +  +P+     LK     +N     +           +L  L L  
Sbjct: 280 SNNRLVALNLYGQPI---PTLKVLDLSHN----HLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 28/198 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L     +E L    S   I++++    +   L  L + +   N +       ++  L  +
Sbjct: 201 LAIPIAVEELDA--SHNSINVVR--GPVNVELTILKLQH---NNLTDTAWLLNYPGLVEV 253

Query: 61  GMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
                   L+ N L+ I       M  L+ L +S      N    L+        L+ L 
Sbjct: 254 D-------LSYNELEKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLD 301

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPIS 176
           +  N L   +         L  L +  N +  ++  S    L +   L LS+N +     
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKN---LTLSHNDWDCNSL 356

Query: 177 LEPLFNHSRLKTFYADNN 194
                N +R     AD +
Sbjct: 357 RALFRNVARPAVDDADQH 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (278), Expect = 6e-26
 Identities = 71/367 (19%), Positives = 122/367 (33%), Gaps = 48/367 (13%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            + L  NS+  L+    +S   ++ LQ L +        I  +   G  +L  L L  N 
Sbjct: 34  YVDLSLNSIAELN---ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 371 LQ-------------EGLYLNNNSL-SGKIPR-WLGNLTWLQYIIMPNNHLEGPIPVE-F 414
                          E L L   +L    +   +   LT L+ +++ +N+++   P   F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 415 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV 474
             +    +LD++ N +             K  H +   L     +D++   L        
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGK--HFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 475 DGLSQLSHLILGHNNLEG---EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESY 531
              + ++ L L  N  +    +         ++Q L LSN+   G      +        
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 532 SNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKL 591
                         S        + +I  + +    +          + L  L L+ N+ 
Sbjct: 269 FKGLEASGVKTCDLS--------KSKIFALLKSVFSH---------FTDLEQLTLAQNE- 310

Query: 592 IGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ---- 646
           I  I       LT +  LNLS N L  +    F NL  +E LDLS N +   +  Q    
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLG 369

Query: 647 LVELKTL 653
           L  LK L
Sbjct: 370 LPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (259), Expect = 1e-23
 Identities = 71/395 (17%), Positives = 118/395 (29%), Gaps = 79/395 (20%)

Query: 282 HSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQI 338
              + L  L +        I       L S   L L  N    L+    + L N   L++
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN---LEV 107

Query: 339 LDLSNNHLTG-EIPEHLAVGCVNLQSLALSNNNLQ--------------EGLYLNNN--- 380
           L L+  +L G  +  +      +L+ L L +NN++                L L  N   
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 381 --------SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
                   +  GK    L  L+ +    M    L         +   +  LD+S N    
Sbjct: 168 SICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 433 SLPSCF-HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL--SQLSHLILGHNN 489
           S+   F   ++  ++          +     +            GL  S +    L  + 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 490 LEGEVLVQLCE-LNQLQLLDLSNNNLHGPIPP-CFDN----TTLYESYSNSSSLDEQFEI 543
           +   +L  +      L+ L L+ N ++  I    F        L  S +   S+D     
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDS---- 340

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNL 602
                            +FE   K             L  LDLS N  I  +  Q    L
Sbjct: 341 ----------------RMFENLDK-------------LEVLDLSYNH-IRALGDQSFLGL 370

Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
             ++ L L  N L  +    F  L  ++ + L  N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 8e-22
 Identities = 72/388 (18%), Positives = 128/388 (32%), Gaps = 56/388 (14%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P H+  + +  N +        + L  L+ L V        I ++    L+S+  L L  
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNELNAEITQSHSLTAPNF----QLSRLSLSSGY 222
           N F     LE   FN  + L+        L         L+   F     L  L L    
Sbjct: 89  NQFL---QLETGAFNGLANLEVLTLTQCNL-----DGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 223 EDGVTFPKFLYHQHDLETVELSHIKMNGEFP-TWLLENNTKLRQLSLVNDSLGGPFRLPI 281
              +    F  +      ++L+  K+        L         L L + +L       +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 282 HSHKR--------LGMLDISNNNFRGHIPIEIGDVLPS-------LYLFNNSMNALDGSI 326
              K         +  LD+S N F+  +     D +         L    N  ++   + 
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 327 PSSLGNMKF-------LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------- 372
                N  F       ++  DLS + +   + + +     +L+ L L+ N +        
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319

Query: 373 ------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDI 425
                   L L+ N L     R   NL  L+ + +  NH+   +  + F  L  L+ L +
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELAL 378

Query: 426 SDNNISGSLPS-CFHPL-SIKQVHLSKN 451
             N +  S+P   F  L S++++ L  N
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 72/414 (17%), Positives = 122/414 (29%), Gaps = 128/414 (30%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
            +   NLE LTL   +L  ++L    + F  L +L                         
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSL------------------------- 131

Query: 61  GMMSTRIALNTNFLQVIS-----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQEL 115
                 + L  N ++ I       +M     L L+++ + +     L        H   L
Sbjct: 132 ----EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN--FQGKHFTLL 185

Query: 116 YIGSNDLRGSLPWCMT---------NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
            + S  L+  +                TS+  LD+S N    S++      +   +   L
Sbjct: 186 RLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 167 SNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGV 226
             ++     S     N                           NF    L  S       
Sbjct: 245 ILSNSYNMGSSFGHTNFKDP----------------------DNFTFKGLEASG------ 276

Query: 227 TFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR 286
                      ++T +LS  K+       +  + T L QL+L                  
Sbjct: 277 -----------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL------------------ 306

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDLSN 343
                 + N     I       L     L L  N + ++D  +  +L     L++LDLS 
Sbjct: 307 ------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK---LEVLDLSY 356

Query: 344 NHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ 397
           NH+   + +   +G  NL+ LAL  N L+        S+   I   L +L  + 
Sbjct: 357 NHIR-ALGDQSFLGLPNLKELALDTNQLK--------SVPDGIFDRLTSLQKIW 401

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (278), Expect = 1e-25
 Identities = 83/397 (20%), Positives = 136/397 (34%), Gaps = 74/397 (18%)

Query: 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSL---Y 313
           L+ +     + +   +    F     +     ++   N+  R  +P  + D    +    
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373
           L +  +  +D     +      +Q L +  N +   +P H+      L  L L  N+L  
Sbjct: 82  LNDLQIEEID---TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 136

Query: 374 GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGS 433
                  SL   I     N   L  + M NN+LE      F     LQ L +S N ++  
Sbjct: 137 -------SLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 434 LPSCFHPLSIKQVHLSKNML-----HGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGH 487
             S    L     ++S N+L        ++  D S+N +N  +        +L+ L L H
Sbjct: 187 DLSLIPSL--FHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQH 241

Query: 488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLYESYSNSSSLDEQFEI 543
           NNL       L     L  +DLS N L   +   F        LY S +   +L+   + 
Sbjct: 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP 299

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT 603
                                             +  L  LDLS N L+  +        
Sbjct: 300 ----------------------------------IPTLKVLDLSHNHLLH-VERNQPQFD 324

Query: 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
           R++ L L HN ++ L  ST   LK+   L LS+N  +
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (263), Expect = 9e-24
 Identities = 60/356 (16%), Positives = 124/356 (34%), Gaps = 71/356 (19%)

Query: 312 LYLFNNSMNALDGSIPSSL--GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
              ++  ++     +        +   +I+   N+ +  ++P  L      ++ L L++ 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 85

Query: 370 NLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429
            ++E   ++  + +            +Q + M  N +    P  F  + LL +L +  N+
Sbjct: 86  QIEE---IDTYAFAY--------AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 430 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHN 488
           +S      FH                +L    +S N L     D     + L +L L  N
Sbjct: 135 LSSLPRGIFHNTP-------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 489 NLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
            L     V L  +  L   ++S N L   +        L  S+++ + +           
Sbjct: 182 RLTH---VDLSLIPSLFHANVSYNLLST-LAIPIAVEELDASHNSINVVRGP-------- 229

Query: 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608
                                       V   L+ L L  N L       + N   +  +
Sbjct: 230 ----------------------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEV 259

Query: 609 NLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           +LS+N+L  ++   F  ++ +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (260), Expect = 3e-23
 Identities = 94/536 (17%), Positives = 181/536 (33%), Gaps = 121/536 (22%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           + + +   ++ +R      + +   + +L+++  Q+   I +    +  +I+KLY+  N 
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 110

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
            +  +      N   L     + N+L+                                 
Sbjct: 111 IRY-LPPHVFQNVPLLTVLVLERNDLS--------------------------------- 136

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
                                 P  +  N  KL  LS+ N++L         +   L  L
Sbjct: 137 --------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
            +S+N    H+ +    ++PSL+  N S N L     S+L     ++ LD S+N +   +
Sbjct: 177 QLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VV 226

Query: 351 PEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPI 410
              +    V L  L L +NNL +               WL N   L  + +  N LE  +
Sbjct: 227 RGPV---NVELTILKLQHNNLTD-------------TAWLLNYPGLVEVDLSYNELEKIM 270

Query: 411 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGS 469
              F ++  L+ L IS+N +  +L     P+               LK  DLS+N L   
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIP-------------TLKVLDLSHNHLL-H 315

Query: 470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYE 529
           +        +L +L L HN++     ++L   + L+ L LS+N+       C     L+ 
Sbjct: 316 VERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD-----CNSLRALFR 367

Query: 530 SYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589
           + +  +  D         +   G              K     Y  ++L  ++   +   
Sbjct: 368 NVARPAVDDADQHCKIDYQLEHG-----------LCCKESDKPYLDRLLQYIALTSVVEK 416

Query: 590 KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH 645
                +    G  +   T+N   +    +       L+  E L+   N+L  ++  
Sbjct: 417 -----VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (253), Expect = 2e-22
 Identities = 94/624 (15%), Positives = 199/624 (31%), Gaps = 97/624 (15%)

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
             +++I          +    L + +I+   ++ +   + ++ L     +E L L++   
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 87

Query: 172 QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKF 231
           +  I          ++  Y   N                  +  L            P  
Sbjct: 88  EE-IDTYAFAYAHTIQKLYMGFN-----------------AIRYLP-----------PHV 118

Query: 232 LYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLD 291
             +   L  + L    ++   P  +  N  KL  LS+ N++L         +   L  L 
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 292 ISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIP 351
           +S+N    H+ +    ++PSL+  N S N L     S+L     ++ LD S+N +   + 
Sbjct: 178 LSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVR 227

Query: 352 EHLAVGCVNLQSLALSNNNLQE-----------GLYLNNNSLSGKIPRWLGNLTWLQYII 400
             +    V L  L L +NNL +            + L+ N L   +      +  L+ + 
Sbjct: 228 GPV---NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 401 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRD 460
           + NN L   + +    +  L++LD+S N++     +      ++ ++L  N +       
Sbjct: 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV------ 337

Query: 461 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP 520
                   ++   +     L +L L HN+ +   L  L     +    + + + H  I  
Sbjct: 338 --------TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDY 385

Query: 521 -------CFDNTTLYE----SYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNI 569
                  C ++   Y      Y   +S+ E+ +          +    +  +  + T+  
Sbjct: 386 QLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR-CSATDTINSVQSLSHYITQQG 444

Query: 570 VYIYQGKVLSLLSGLDL--SCNKLIGPIPPQIGNLTRI--------QTLNLSHNDLIGLI 619
               QG         +L     +L      Q   L  +        +   L  + L    
Sbjct: 445 GVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSS 504

Query: 620 PSTFSNLKHVESLDL-SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 678
            +      H++        +   +      + K  E        L  ++    A+ A   
Sbjct: 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564

Query: 679 ESSYEGNTFLCGLPLPICRSPATM 702
           + +      +  L     R+P T 
Sbjct: 565 QETSLKRQKVKQLEAKKNRNPDTR 588

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 84/524 (16%), Positives = 167/524 (31%), Gaps = 88/524 (16%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
              N + +T   S++   L  ++   F  ++ L+++  ++   +    F +  +++ L  
Sbjct: 49  TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY- 105

Query: 63  MSTRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYI 117
                 +  N ++ +       +P L  L L       N    L RG+      L  L +
Sbjct: 106 ------MGFNAIRYLPPHVFQNVPLLTVLVLER-----NDLSSLPRGIFHNTPKLTTLSM 154

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISL 177
            +N+L           TSL+ L +SSN+LT       L  + S+    +S N       L
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVSYNL------L 204

Query: 178 EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ-LSRLSLSSGYEDGVTFPKFLYHQH 236
             L     ++   A +N +N        +  P    L+ L L     + +T   +L +  
Sbjct: 205 STLAIPIAVEELDASHNSIN-------VVRGPVNVELTILKLQH---NNLTDTAWLLNYP 254

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
            L  V+LS+ ++  +          +L +L + N+ L     L       L +LD+S+N+
Sbjct: 255 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
                                        +  +      L+ L L +N +   +      
Sbjct: 313 LL--------------------------HVERNQPQFDRLENLYLDHNSIV-TLKLST-- 343

Query: 357 GCVNLQSLALSNNNLQEG-----------LYLNNNSLSGKIPRWLGN-LTWLQ----YII 400
               L++L LS+N+                 +++     KI   L + L   +    Y+ 
Sbjct: 344 -HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

Query: 401 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRD 460
               ++     VE  Q    +       N   SL           +  ++ +     +  
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 461 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQL 504
               +L          L  L   I  +          L   +  
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN 506

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 35/235 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             N   L  L L  + L  SL + I    P L  LS+S   +   +    F    SL++L
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 176

Query: 61  GMMSTRIA--------------LNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106
            + S R+               ++ N L  ++    +++ L  S+     NS  ++   +
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI-PIAVEELDASH-----NSINVVRGPV 230

Query: 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
                L  L +  N+L     W + N   L  +D+S N+L   I   P + +  +E+LY+
Sbjct: 231 NV--ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI 285

Query: 167 SNNHFQ-IPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
           SNN    + +  +P+     LK     +N     +           +L  L L  
Sbjct: 286 SNNRLVALNLYGQPI---PTLKVLDLSHN----HLLHVERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 8/88 (9%), Positives = 31/88 (35%)

Query: 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
              +   + +           +   L   + +   ++ +  L  +   + + VE L+L++
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 637 NKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            ++     +      T++   + +N + 
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 4e-25
 Identities = 93/570 (16%), Positives = 174/570 (30%), Gaps = 160/570 (28%)

Query: 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSS------------P 154
            S   LQE    S++L   +P    N+ S      + ++   +                 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 155 LIHLTSIEKLYLSNNHFQ-IPISLEPLFNHSRLKTFYADNN---ELNAEITQSHSLTAPN 210
                   +L L+N     +P           L++  A  N   EL        SL   N
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELP------PHLESLVASCNSLTELPELPQSLKSLLVDN 120

Query: 211 FQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVN 270
             L  LS                                        +    L  L + N
Sbjct: 121 NNLKALS----------------------------------------DLPPLLEYLGVSN 140

Query: 271 DSLGGPFRLP-IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSS 329
           + L    +LP + +   L ++D+ NN+ +  +P      L  +   NN +  L       
Sbjct: 141 NQLE---KLPELQNSSFLKIIDVDNNSLK-KLPDLPPS-LEFIAAGNNQLEELP-----E 190

Query: 330 LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE-----------GLYLN 378
           L N+ FL  +   NN L  ++P+      ++L+S+   NN L+E            +Y +
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLP----LSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 379 NNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF 438
           NN L   +P    +L  L    + +N+L   +P     L  L + +   + +S   P+  
Sbjct: 246 NNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN-- 298

Query: 439 HPLSIKQVHLSKNMLH------GQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
               +  ++ S N +         L+  ++S N+L   +P       +L  LI   N+L 
Sbjct: 299 ----LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA 350

Query: 492 GEVLVQL-CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
                ++      L+ L +  N L    P   ++       S+ + + E           
Sbjct: 351 -----EVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPEL---------- 394

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610
                                         L  L +  N L    P    ++     L +
Sbjct: 395 ---------------------------PQNLKQLHVETNPLRE-FPDIPESVED---LRM 423

Query: 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
           +   ++            +E     ++  +
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.1 bits (237), Expect = 8e-21
 Identities = 73/396 (18%), Positives = 126/396 (31%), Gaps = 97/396 (24%)

Query: 283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
           S+  L      ++N    +P+E  + + S   + N+ +  + + P   G  + + +  L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 343 NNHLTGEIPEHLAVGCVNLQSLALSNNNLQ---------EGLYLNNNSLSGKIPRWLGNL 393
           +                    L L+N  L          E L  + NSL+ ++P    +L
Sbjct: 67  DCLDR------------QAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSL 113

Query: 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 453
             L         L    P       LL+ L +S+N +   LP   +   +K + +  N L
Sbjct: 114 KSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL 165

Query: 454 HGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNN 513
                           +PD       L  +  G+N LE   L +L  L  L  +   NN+
Sbjct: 166 K--------------KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS 206

Query: 514 LHGPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572
           L   +P    +  ++    +    L E                                 
Sbjct: 207 LKK-LPDLPLSLESIVAGNNILEELPEL-------------------------------- 233

Query: 573 YQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632
              + L  L+ +    N L   +P    +L   + LN+  N L  L P    +L     L
Sbjct: 234 ---QNLPFLTTIYADNNLLKT-LPDLPPSL---EALNVRDNYLTDL-PELPQSLT---FL 282

Query: 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 668
           D+S N  +  +      L  L   S    +L    P
Sbjct: 283 DVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLPP 317

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 37/210 (17%), Positives = 62/210 (29%), Gaps = 44/210 (20%)

Query: 476 GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSS 535
             + L   +   +NL  E+ V+   +        + +      PP               
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 536 SLDEQF-EIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594
            LD Q  E+  +           +  + E                 L  L  SCN L   
Sbjct: 68  CLDRQAHELELN--------NLGLSSLPEL-------------PPHLESLVASCNSLT-E 105

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPS---------------TFSNLKHVESLDLSNNKL 639
           +P    +L  +   N +   L  L P                   N   ++ +D+ NN L
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
             K+P     L+ +   +   N L  E+PE
Sbjct: 166 K-KLPDLPPSLEFI---AAGNNQLE-ELPE 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 61/372 (16%), Positives = 122/372 (32%), Gaps = 70/372 (18%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
           +I     N    +I  ++++ L  +    L     N++ L            L+ N LS 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKEL-----------DLSGNPLSQ 48

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIK 444
                L   T L+ + + +N L   +      L  L+ LD+++N +   L          
Sbjct: 49  ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG------- 98

Query: 445 QVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQ 503
                       ++    + N ++  +           ++ L +N +     +     ++
Sbjct: 99  ----------PSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 504 LQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFE 563
           +Q LDL  N +                 ++S +L+    +         N          
Sbjct: 146 VQYLDLKLNEIDTVNFAEL--------AASSDTLEH---LNLQ-----YN---------- 179

Query: 564 FTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF 623
                I  +    V + L  LDLS NKL   + P+  +   +  ++L +N L+  I    
Sbjct: 180 ----FIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKAL 233

Query: 624 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYE 683
              +++E  DL  N  +     +    K   V +VA   +  ++     +  T     + 
Sbjct: 234 RFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHY 291

Query: 684 GNTFLCGLPLPI 695
           G      LP P 
Sbjct: 292 GAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 59/380 (15%), Positives = 111/380 (29%), Gaps = 100/380 (26%)

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
           N    +I  V+ + L     +S      ++++L LS N                      
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------------------- 44

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSH--IKMN 249
                                LS++S              L     LE + LS   +   
Sbjct: 45  --------------------PLSQIS-----------AADLAPFTKLELLNLSSNVLYET 73

Query: 250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVL 309
            +      E+ + LR L L N+ +       +     +  L  +NNN    +    G   
Sbjct: 74  LDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRGQGK 122

Query: 310 PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
            ++YL NN +  L        G    +Q LDL  N +       LA     L+ L L  N
Sbjct: 123 KNIYLANNKITMLR---DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 370 NLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 429
            + +            +   +     L+ + + +N L   +  EF     +  + + +N 
Sbjct: 180 FIYD------------VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225

Query: 430 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLN-GSIPDWVDGLSQLSHLILGH 487
           +   +                      L+  DL  N  + G++ D+     ++  +    
Sbjct: 226 LV-LIEKALRFSQ-------------NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 488 NNLEGEVLVQLCELNQLQLL 507
                    + C +  L   
Sbjct: 272 VKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 57/347 (16%), Positives = 113/347 (32%), Gaps = 64/347 (18%)

Query: 77  ISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
           I ++    K   ++ S+L     + L     S  +++EL +  N L       +   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 137 RILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNEL 196
            +L++SSN L     +  L  L+++  L L+NN+      ++ L     ++T +A NN +
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 197 NAEITQSHSLTAPNFQ-LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTW 255
           +        ++    Q    + L++                       + I         
Sbjct: 112 S-------RVSCSRGQGKKNIYLAN-----------------------NKIT---MLRDL 138

Query: 256 LLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
                ++++ L L  + +    F     S   L  L++  N     +  ++      L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG 374
            + S N L   +     +   +  + L NN L   I + L     NL+   L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-- 250

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421
                    G +  +      +Q +             E C +  L 
Sbjct: 251 --------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 34/271 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             +  N++ L L G+ L       +A  F  L+ L++S    N +          +L  L
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSS---NVLYETLDLESLSTLRTL 85

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                   LN N++Q +    PS++ L  + + +   S              + +Y+ +N
Sbjct: 86  D-------LNNNYVQELLV-GPSIETLHAANNNISRVSCSRG-------QGKKNIYLANN 130

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            +           + ++ LD+  N++     +       ++E L L  N       ++  
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQ 187

Query: 181 FNHSRLKTFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHD 237
              ++LKT    +N+L     E   +  +T     L    L           K L    +
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVT--WISLRNNKLVL-------IEKALRFSQN 238

Query: 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSL 268
           LE  +L     +          N +++ ++ 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (262), Expect = 1e-23
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 42/275 (15%)

Query: 256 LLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLF 315
             +   K        +       L      +   L ++  N    +P  +   +  L + 
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLPPQITVLEIT 88

Query: 316 NNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ--- 372
            N++     S+P    +   L+ LD  +N L+  +PE  A    +L+ L + NN L    
Sbjct: 89  QNAL----ISLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLTMLP 136

Query: 373 ------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 426
                 E +  +NN L+  +P    +L  L    + NN L   +P      + L+ LD+S
Sbjct: 137 ELPALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLTF-LPE---LPESLEALDVS 188

Query: 427 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILG 486
            N +  SLP+              +    ++      NR+   IP+ +  L     +IL 
Sbjct: 189 TNLLE-SLPAVPVRN--------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 487 HNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPC 521
            N L   +   L +                     
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.1 bits (231), Expect = 8e-20
 Identities = 55/347 (15%), Positives = 95/347 (27%), Gaps = 98/347 (28%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
           S   F N+++       S+    +   +   + N     + E L         L L+  N
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLN 70

Query: 371 LQE----------GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLL 420
           L             L +  N+L   +P    +L +L      +N L   +P     L   
Sbjct: 71  LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELPASL--- 122

Query: 421 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQ 479
           + LD+ +N ++  LP                     L+  +   N+L   +P+     + 
Sbjct: 123 KHLDVDNNQLT-MLPELP----------------ALLEYINADNNQLT-MLPEL---PTS 161

Query: 480 LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDE 539
           L  L + +N L    L +L     L+ LD+S N L           +L      +     
Sbjct: 162 LEVLSVRNNQLT--FLPEL--PESLEALDVSTNLL----------ESLPAVPVRNHHS-- 205

Query: 540 QFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI 599
                                                            N++   IP  I
Sbjct: 206 --------------------------------------EETEIFFRCRENRITH-IPENI 226

Query: 600 GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ 646
            +L    T+ L  N L   I  + S               +     Q
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 1e-16
 Identities = 58/328 (17%), Positives = 105/328 (32%), Gaps = 65/328 (19%)

Query: 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP-NNHLEGPIPVEFCQLDLLQILDI 425
            NNN         N++SG    +       +   +P  N  E    ++ C ++    L +
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 426 SDNNISGSLPSCFHPLSIKQVHLSKNMLH------GQLKR-DLSYNRLNGSIPDWVDGLS 478
           +  N+S SLP    P  I  + +++N L         L+  D   NRL+ ++P+     +
Sbjct: 67  NRLNLS-SLPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPE---LPA 120

Query: 479 QLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNLHGPIPPCFDN-TTLYESYSNSSS 536
            L HL + +N L       L EL   L+ ++  NN L   +P    +   L    +  + 
Sbjct: 121 SLKHLDVDNNQLT-----MLPELPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF 174

Query: 537 LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP 596
           L E                                         L  LD+S N L   +P
Sbjct: 175 LPEL-------------------------------------PESLEALDVSTNLLES-LP 196

Query: 597 PQIGNLTRIQT----LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT 652
                    +          N +  + P    +L    ++ L +N L+ +I   L +   
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 653 LEVFSVAYNNLSGEIPEWTAQFATFNES 680
              +       S    +         ++
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 6e-14
 Identities = 58/404 (14%), Positives = 122/404 (30%), Gaps = 56/404 (13%)

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLE 178
           +                 +   + N+    +       +    +L L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLL---KECLINQFSELQLNRLNLSSLPDNLP 79

Query: 179 PLFNHSRLKTFYADNNELN---AEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ 235
           P     ++       N L            L A + +LS L            P+     
Sbjct: 80  P-----QITVLEITQNALISLPELPASLEYLDACDNRLSTL------------PELPAS- 121

Query: 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNN 295
             L+ +++ + ++     T L E    L  ++  N+ L     LP      L +L + NN
Sbjct: 122 --LKHLDVDNNQL-----TMLPELPALLEYINADNNQLT---MLP-ELPTSLEVLSVRNN 170

Query: 296 NFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLA 355
                +P      L +L +  N + +L      +  + +         N +T  IPE++ 
Sbjct: 171 QLT-FLPELPES-LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL 227

Query: 356 VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-- 413
               +L             + L +N LS +I   L   T       P  +       +  
Sbjct: 228 ----SLDPT--------CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

Query: 414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS---I 470
             +     +      N    +   +H    ++   + +    +L   +S    +G    +
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

Query: 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
             W++ LS  + L      +  +      +   L   +L    L
Sbjct: 336 AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 8e-13
 Identities = 59/362 (16%), Positives = 106/362 (29%), Gaps = 77/362 (21%)

Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184
           S+   + N  SL   +   N ++    +         EK  L   +    +SL      +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS 244
           +      +   L                              + P  L  Q  +  +E++
Sbjct: 60  QFSELQLNRLNL-----------------------------SSLPDNLPPQ--ITVLEIT 88

Query: 245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIE 304
              +    P         L  L   ++ L     LP      L  LD+ NN     +P  
Sbjct: 89  QNAL-ISLPELP----ASLEYLDACDNRLS---TLP-ELPASLKHLDVDNNQLT-MLPEL 138

Query: 305 IGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSL 364
               L  +   NN +  L    P    +   L++L + NN LT  +PE       +L++L
Sbjct: 139 PAL-LEYINADNNQLTML----PELPTS---LEVLSVRNNQLT-FLPELPE----SLEAL 185

Query: 365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ----YIIMPNNHLEGPIPVEFCQLDLL 420
            +S N L+             +P         +    +     N +   IP     LD  
Sbjct: 186 DVSTNLLES------------LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPT 232

Query: 421 QILDISDNNISGSLPSCFHPLSIKQVHLSKNML---HGQLKRDLSYNRLNGSIPDWVDGL 477
             + + DN +S S           Q       +       +++  +  L  ++  W    
Sbjct: 233 CTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 478 SQ 479
            Q
Sbjct: 292 KQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 6e-12
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 47/232 (20%)

Query: 448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-LVQLCELNQLQL 506
           L  N     L ++  YN ++G+  D+     +     L   N    V L++ C +NQ   
Sbjct: 5   LPINNNF-SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 507 LDLSNNNLHGPIPPCFDN--TTLYESYSNSSSLDEQFEIFFSIESPQGNVEK------QI 558
           L L+  NL   +P       T L  + +   SL E             ++E       ++
Sbjct: 64  LQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELP----------ASLEYLDACDNRL 112

Query: 559 HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL 618
             + E             + + L  LD+  N+L   +P     L   + +N  +N L  L
Sbjct: 113 STLPE-------------LPASLKHLDVDNNQLTM-LPELPALL---EYINADNNQLTML 155

Query: 619 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
            P   ++L   E L + NN+L   +P     L+ L    V+ N L   +P  
Sbjct: 156 -PELPTSL---EVLSVRNNQLT-FLPELPESLEAL---DVSTNLLE-SLPAV 198

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 4e-10
 Identities = 48/266 (18%), Positives = 86/266 (32%), Gaps = 51/266 (19%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
              +  L +  ++L      S+  +  SL+ L      ++ +          SL+HL   
Sbjct: 79  PPQITVLEITQNAL-----ISLPELPASLEYLDACDNRLSTL-----PELPASLKHL--- 125

Query: 64  STRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR 123
                ++ N L ++ E    L+Y++   + L              P  L+ L + +N L 
Sbjct: 126 ----DVDNNQLTMLPELPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLT 173

Query: 124 GSLPWCMTNLTSLRILDVSSNQLTGSISSSP--LIHLTSIEK-LYLSNNHF-QIPISLEP 179
             LP    +   L  LDVS+N L  S+ + P    H    E       N    IP +   
Sbjct: 174 -FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPEN--- 225

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239
           + +     T   ++N L+         +     LS+ +    Y     +      Q +  
Sbjct: 226 ILSLDPTCTIILEDNPLS---------SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 240 TVELSHIKMNGEFPTWLLENNTKLRQ 265
              L+          W  EN      
Sbjct: 277 HRPLADAVTA-----WFPENKQSDVS 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 67/370 (18%), Positives = 117/370 (31%), Gaps = 96/370 (25%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +  S+      +P ++      L L NN +  +         N+K L  L L NN ++ +
Sbjct: 36  VQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKIS-K 90

Query: 350 IPEHLAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYI 399
           I        V L+ L LS N L+          + L ++ N ++         L  +  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 400 IMPNNHL-EGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
            +  N L    I    F  +  L  + I+D NI+ ++P    P S+ ++HL  N +    
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GLPPSLTELHLDGNKIT--- 205

Query: 458 KRDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG 516
                       +      GL+ L+ L L  N++       L     L+ L L+NN L  
Sbjct: 206 -----------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576
            +P    +                                                    
Sbjct: 255 -VPGGLAD---------------------------------------------------- 261

Query: 577 VLSLLSGLDLSCNKL--IGP----IPPQIGNLTRIQTLNLSHNDL--IGLIPSTFSNLKH 628
               +  + L  N +  IG      P           ++L  N +    + PSTF  +  
Sbjct: 262 -HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 629 VESLDLSNNK 638
             ++ L N K
Sbjct: 321 RAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 57/318 (17%)

Query: 335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394
            L+++  S+  L  ++P+ L     +   L L NN + E   + +            NL 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITE---IKDGDFK--------NLK 76

Query: 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
            L  +I+ NN +    P  F  L  L+ L +S N +   LP    P +++++ + +N + 
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT 134

Query: 455 GQLKRDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQ--LCELNQLQLLDLSN 511
                          +   V +GL+Q+  + LG N L+   +       + +L  + +++
Sbjct: 135 --------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 512 NNLHGPIPPCFDN-TTLYESYSNSSSLDEQ-FEIFFSIES--PQGNVEKQIHEIFEFTTK 567
            N+         + T L+   +  + +D    +   ++       N    I  +   +  
Sbjct: 181 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN---SISAVDNGSLA 237

Query: 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF---- 623
           N            L  L L+ NKL+  +P  + +   IQ + L +N++  +  + F    
Sbjct: 238 N---------TPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 624 --SNLKHVESLDLSNNKL 639
             +       + L +N +
Sbjct: 288 YNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 59/361 (16%), Positives = 117/361 (32%), Gaps = 87/361 (24%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L+ +   + P    L +   ++   +    F + K+L  L        L  N +  IS  
Sbjct: 43  LEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTL-------ILINNKISKISPG 94

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
               +  L+ L LS      N  + L   +  P  LQEL +  N++          L  +
Sbjct: 95  AFAPLVKLERLYLSK-----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 137 RILDVSSNQLT-GSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNHSRLKTFYADNN 194
            ++++ +N L    I +     +  +  + +++ +   IP     L     L   + D N
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LP--PSLTELHLDGN 202

Query: 195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPT 254
                            +++++               L   ++L  + LS   ++     
Sbjct: 203 -----------------KITKVD-----------AASLKGLNNLAKLGLSFNSIS-AVDN 233

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDV--LPSL 312
             L N   LR+L L                        +NN     +P  + D   +  +
Sbjct: 234 GSLANTPHLRELHL------------------------NNNKLV-KVPGGLADHKYIQVV 268

Query: 313 YLFNNSMNALDGSI---PSSLGNMKFLQILDLSNNHLT-GEIPEHLAVGCVNLQSLALSN 368
           YL NN+++A+  +    P           + L +N +   EI            ++ L N
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 369 N 369
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVN----GVVHGQGFPHFKSLEH 59
              L+ L +H +   I+ ++   S+F  L  + +     N      +    F   K L +
Sbjct: 120 PKTLQELRVHEN--EITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 60  LGMMSTRIALNTNFLQVISESMP-SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG 118
           +        +    +  I + +P SL  L L  + +    +++    L    +L +L + 
Sbjct: 176 IR-------IADTNITTIPQGLPPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLS 224

Query: 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPIS- 176
            N +       + N   LR L +++N+L   +    L     I+ +YL NN+   I  + 
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSND 282

Query: 177 ---LEPLFNHSRLKTFYADNNEL 196
                     +        +N +
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L  L  L L  NK I  I P     L +++ L LS N L  L       L   + L +  
Sbjct: 75  LKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHE 130

Query: 637 NKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           N++          L  + V  +  N L 
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           L  L  L LS N+L   +P        +Q L +  N++  +  S F+ L  +  ++L  N
Sbjct: 99  LVKLERLYLSKNQLKE-LPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 638 KL-NGKIPHQ-LVELKTLEVFSVAYNNLS 664
            L +  I +     +K L    +A  N++
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
           L  +  S   L   +P  +        L+L +N +  +    F NLK++ +L L NNK++
Sbjct: 33  LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 641 GKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
              P     L  LE   ++ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 35/242 (14%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT-G 348
           +  ++      +P  I      L L +N + +L          +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVPTGIPSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSSNGLSFK 67

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQ------------EGLYLNNNSLSGKIPR-WLGNLTW 395
                   G  +L+ L LS N +             E L   +++L          +L  
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLH 454
           L Y+ + + H        F  L  L++L ++ N+   +     F  L             
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------ 175

Query: 455 GQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
             L   DLS  +L   +     + LS L  L + HNN           LN LQ+LD S N
Sbjct: 176 -NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 513 NL 514
           ++
Sbjct: 234 HI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 41/248 (16%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
           L++ +N  +  +P  + D L  L    L +N ++        S      L+ LDLS N +
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCC-SQSDFGTTSLKYLDLSFNGV 90

Query: 347 TGEIPEHLAVGCVNLQSLALSNNNLQ--------------EGLYLNNNSLSGKIPRWLGN 392
              +  +   G   L+ L   ++NL+                L +++             
Sbjct: 91  I-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 393 LTWLQYIIMP-NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 451
           L+ L+ + M  N+  E  +P  F +L  L  LD+S   +    P+ F+ LS         
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--------- 199

Query: 452 MLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLL 507
                L+  ++S+N            L+ L  L    N++   + + L      + L  L
Sbjct: 200 ----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFL 253

Query: 508 DLSNNNLH 515
           +L+ N+  
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 57/297 (19%), Positives = 100/297 (33%), Gaps = 79/297 (26%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS--G 432
           +  N+  L+  +P  +   +    + + +N L+      F +L  L  L +S N +S  G
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 433 SLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
                    +              LK  DLS+N +  ++     GL QL HL   H+NL+
Sbjct: 69  CCSQSDFGTT-------------SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

Query: 492 GEVLVQ---LCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE 548
              + +      L  L  LD+S+ +        F+                         
Sbjct: 115 --QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------ 148

Query: 549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQT 607
                                        LS L  L ++ N       P I   L  +  
Sbjct: 149 -----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 608 LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           L+LS   L  L P+ F++L  ++ L++S+N            L +L+V   + N++ 
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 24/227 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASI-FPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
               T L  L+L  + L      S +     SLK L +S+  V  +     F   + LEH
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFLGLEQLEH 105

Query: 60  LGMMSTRIALNTNFLQVISE-----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQE 114
           L           + L+ +SE     S+ +L YL +S++      + I + GL     L+ 
Sbjct: 106 LD-------FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL---SSLEV 154

Query: 115 LYIGSNDLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQI 173
           L +  N  + +    + T L +L  LD+S  QL   +S +    L+S++ L +S+N+F  
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFS 213

Query: 174 PISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
            +   P    + L+      N +    ++   L      L+ L+L+ 
Sbjct: 214 -LDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 35/220 (15%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            +   +  + ++   IPSS         L+L +N L   +P  +      L  L+LS+N 
Sbjct: 11  EIRCNSKGLTSVPTGIPSSA------TRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG 63

Query: 371 LQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 430
           L         S  G   +     T L+Y+ +  N +   +   F  L+ L+ LD   +N+
Sbjct: 64  L---------SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 113

Query: 431 SGSLPSC--FHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGH 487
              +     F  L               L   D+S+     +     +GLS L  L +  
Sbjct: 114 K-QMSEFSVFLSLR-------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 488 NNLEGEVLVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTT 526
           N+ +   L     EL  L  LDLS   L    P  F++ +
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 238 LETVELSHIKMN-GEFPTWLLENNTKLRQLSLVNDSLGGPFRLP--IHSHKRLGMLDISN 294
           L  + LS   ++     +      T L+ L L  + +     +       ++L  LD  +
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQH 110

Query: 295 NNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHL 354
           +N +      +   L +L   + S      +       +  L++L ++ N         +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 355 AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF 414
                NL  L LS   L++   L+  + +         L+ LQ + M +N+        +
Sbjct: 171 FTELRNLTFLDLSQCQLEQ---LSPTAFNS--------LSSLQVLNMSHNNFFSLDTFPY 219

Query: 415 CQLDLLQILDISDNNISGSLPSCFHPL--SIKQVHLSKNMLH 454
             L+ LQ+LD S N+I  S          S+  ++L++N   
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 18/200 (9%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISYCEVNGV-VHGQGFPHFKSLEHLG 61
            ++   L L  +   +  L          L  LS+S   ++      Q      SL++L 
Sbjct: 27  PSSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL- 83

Query: 62  MMSTRIALNTNFLQVISE---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG 118
                  L+ N +  +S     +  L++L   +S L   S   +   L    +L  L I 
Sbjct: 84  ------DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL---RNLIYLDIS 134

Query: 119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLE 178
               R +       L+SL +L ++ N    +        L ++  L LS    +  +S  
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193

Query: 179 PLFNHSRLKTFYADNNELNA 198
              + S L+     +N   +
Sbjct: 194 AFNSLSSLQVLNMSHNNFFS 213

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 36/214 (16%), Positives = 59/214 (27%), Gaps = 59/214 (27%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV--QLCELNQLQLLDLSNNNLHGP 517
           +L  N+L        D L+QL+ L L  N L  +            L+ LDLS N +   
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 92

Query: 518 IPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKV 577
           +   F                                                       
Sbjct: 93  MSSNFLG----------------------------------------------------- 99

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L  L  LD   + L       +  +L  +  L++SH          F+ L  +E L ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 637 NKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 669
           N            EL+ L    ++   L  ++  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 582 SGLDLSCNKL-IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
           SG ++ CN   +  +P  I   +    L L  N L  L    F  L  +  L LS+N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 641 GK--IPHQLVELKTLEVFSVAYNNLS 664
            K           +L+   +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 69/373 (18%), Positives = 114/373 (30%), Gaps = 97/373 (26%)

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
           L ++  S+   +  +P EI      L L NN ++ L          ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKI 90

Query: 347 TGEIPEHLAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWL 396
           + +I E        LQ L +S N+L             L +++N +          L  +
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 397 QYIIMPNNHL-EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 455
             I M  N L              L  L IS+  ++  +P    P ++ ++HL  N +  
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK-DLPETLNELHLDHNKIQ- 206

Query: 456 QLKRDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
                        +I        S+L  L LGHN +       L  L  L+ L L NN L
Sbjct: 207 -------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
              +P    +                                                  
Sbjct: 254 SR-VPAGLPD-------------------------------------------------- 262

Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQI-------GNLTRIQTLNLSHNDL--IGLIPSTFSN 625
              L LL  + L  N  I  +                   ++L +N +    + P+TF  
Sbjct: 263 ---LKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 626 LKHVESLDLSNNK 638
           +    ++   N K
Sbjct: 319 VTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 60/383 (15%), Positives = 110/383 (28%), Gaps = 91/383 (23%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNL-TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           HL+ +      L+ ++P     +     +LD+ +N ++  +       L  +  L L NN
Sbjct: 34  HLRVVQCSDLGLK-AVP---KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 170 HFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ-LSRLSLSSGYEDGVTF 228
                I  +      +L+  Y   N L         +       L  L +          
Sbjct: 89  KISK-IHEKAFSPLRKLQKLYISKNHL-------VEIPPNLPSSLVELRIHDN------- 133

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG-GPFRLPIHSHKRL 287
                         +  +      P  +      +  + +  + L    F        +L
Sbjct: 134 -------------RIRKV------PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174

Query: 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
             L IS       IP ++ + L  L+L +N + A++      L     L  L L +N + 
Sbjct: 175 NYLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIE---LEDLLRYSKLYRLGLGHNQIR 230

Query: 348 GEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
             I          L+ L L NN L              +P  L +L  LQ          
Sbjct: 231 -MIENGSLSFLPTLRELHLDNNKLSR------------VPAGLPDLKLLQV--------- 268

Query: 408 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN 467
                          + +  NNI+    + F P+         N +       L  N + 
Sbjct: 269 ---------------VYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS------LFNNPVP 307

Query: 468 GSI--PDWVDGLSQLSHLILGHN 488
                P     ++    +  G+ 
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 27/242 (11%)

Query: 285 KRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
           ++L  L IS N+    IP  +   L  L + +N +  +          ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157

Query: 345 HLTGEIPEHLAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRW-LGNL 393
            L     E  A   + L  L +S   L             L+L++N +   I    L   
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRY 216

Query: 394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNM 452
           + L  + + +N +          L  L+ L + +N +S  +P+    L  ++ V+L  N 
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

Query: 453 LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQ--LCELNQLQLLDLS 510
           +       +  N             +  + + L +N +    +       +     +   
Sbjct: 276 I-----TKVGVNDFCPVGFG--VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 511 NN 512
           N 
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 63/338 (18%), Positives = 117/338 (34%), Gaps = 93/338 (27%)

Query: 335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394
            L+++  S+  L   +P+ ++    +   L L NN++ E   L  +            L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISE---LRKDDFK--------GLQ 78

Query: 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
            L  +++ NN +       F  L  LQ L IS N++   +P    P S+ ++ +  N + 
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIR 136

Query: 455 GQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
                          +P                    G        L  +  +++  N L
Sbjct: 137 --------------KVPK---------------GVFSG--------LRNMNCIEMGGNPL 159

Query: 515 -HGPIPP-CFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572
            +    P  FD   L     + +                     ++  I           
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEA---------------------KLTGI----------- 187

Query: 573 YQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631
               +   L+ L L  NK I  I  +     +++  L L HN +  +   + S L  +  
Sbjct: 188 -PKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
           L L NNKL+ ++P  L +LK L+V  +  NN++ ++  
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 57/337 (16%), Positives = 107/337 (31%), Gaps = 65/337 (19%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L+++   I P    L +   +++  +    F   + L  L        L  N +  I E 
Sbjct: 45  LKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYAL-------VLVNNKISKIHEK 96

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
               +  L+ L +S      N    +   L  P  L EL I  N +R       + L ++
Sbjct: 97  AFSPLRKLQKLYISK-----NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 137 RILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF-QIPISLEPLFNHSRLKTFYADNNE 195
             +++  N L  S           +  L +S      IP  L        L   + D+N+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNK 204

Query: 196 LNAEITQSHSLTAPNFQ----LSRLSLS----SGYEDGVTFPKFLYHQHDLETVELSHIK 247
           +        ++   +      L RL L        E+G      L     L  + L + K
Sbjct: 205 I-------QAIELEDLLRYSKLYRLGLGHNQIRMIENGS-----LSFLPTLRELHLDNNK 252

Query: 248 MNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD 307
           ++   P   L +   L+ + L  +++                  +  N+F          
Sbjct: 253 LS-RVPAG-LPDLKLLQVVYLHTNNIT----------------KVGVNDFCPVGFGVKRA 294

Query: 308 VLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
               + LFNN +   +   P++   +     +   N 
Sbjct: 295 YYNGISLFNNPVPYWEVQ-PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 30/206 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
                N+  + + G+ L  S  +  A     L  L IS  ++ G+         ++L  L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD----LPETLNEL 198

Query: 61  GMMSTRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSPV-HLQEL 115
                   L+ N +Q I          L  L L +     N  R+++ G  S +  L+EL
Sbjct: 199 -------HLDHNKIQAIELEDLLRYSKLYRLGLGH-----NQIRMIENGSLSFLPTLREL 246

Query: 116 YIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSS------PLIHLTSIEKLYLSNN 169
           ++ +N L   +P  + +L  L+++ + +N +T  +  +        +       + L NN
Sbjct: 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 170 HFQIPISLEPLFNH-SRLKTFYADNN 194
                      F   +        N 
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 47/221 (21%), Positives = 76/221 (34%), Gaps = 31/221 (14%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDLSNNNLHG 516
           DL  N ++    D   GL  L  L+L +N +     +    L    +LQ L +S N+L  
Sbjct: 60  DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL---RKLQKLYISKNHLVE 116

Query: 517 PIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIES-----PQGNVEKQIHEIFEFTTKNIV 570
             P    +   L    +    + +   +F  + +       GN    +            
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGN---PLEN---------S 162

Query: 571 YIYQGKVLSL-LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV 629
               G    L L+ L +S  KL G IP        +  L+L HN +  +          +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 630 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
             L L +N++       L  L TL    +  N LS  +P  
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 29/238 (12%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +     N R  +P  I      L L  N +  +     +S  +++ L+IL LS NH+   
Sbjct: 48  VICVRKNLR-EVPDGISTNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNHIR-T 102

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP 409
           I      G  NL +L L +N L         ++          L+ L+ + + NN +E  
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLT--------TIP---NGAFVYLSKLKELWLRNNPIES- 150

Query: 410 IPVE-FCQLDLLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLH--------GQLK 458
           IP   F ++  L+ LD+ +      +    F  L +++ ++L+   L          +L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210

Query: 459 R-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
             DLS N L+   P    GL  L  L +  + ++         L  L  ++L++NNL 
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.7 bits (220), Expect = 9e-19
 Identities = 63/335 (18%), Positives = 107/335 (31%), Gaps = 95/335 (28%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
              +     +L  E+P+ ++    N + L L  N +Q    +  NS          +L  
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQI---IKVNSFK--------HLRH 89

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 455
           L+ + +  NH+       F  L  L  L++ DN ++      F  LS             
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS------------- 136

Query: 456 QLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNN----LEGEVLVQLCELNQLQLLDLS 510
           +LK   L  N +        + +  L  L LG       +       L   + L+ L+L+
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---SNLRYLNLA 193

Query: 511 NNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570
                                                          + EI   T     
Sbjct: 194 MC--------------------------------------------NLREIPNLTP---- 205

Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHV 629
                  L  L  LDLS N  +  I P     L  +Q L +  + +  +  + F NL+ +
Sbjct: 206 -------LIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 630 ESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
             ++L++N L   +PH L   L  LE   + +N  
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
            L  L++ +N     IP      L     L+L NN + ++     + + +   L+ LDL 
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS---LRRLDLG 168

Query: 343 -NNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPRWL 390
               L+  I E    G  NL+ L L+  NL+           + L L+ N LS   P   
Sbjct: 169 ELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLS 449
             L  LQ + M  + ++      F  L  L  ++++ NN++      F PL  ++++HL 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 450 KNMLH 454
            N  +
Sbjct: 288 HNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 27/226 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
             +  +LE L L  +  HI  ++  A +   +L  L +    +   +    F +   L+ 
Sbjct: 84  FKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKE 140

Query: 60  LGMMSTRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRG-LCSPVHLQE 114
           L        L  N ++ I       +PSL+ L L            +  G      +L+ 
Sbjct: 141 LW-------LRNNPIESIPSYAFNRIPSLRRLDLG----ELKRLSYISEGAFEGLSNLRY 189

Query: 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIP 174
           L +   +LR  +P  +T L  L  LD+S N L+ +I       L  ++KL++  +  Q+ 
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV- 245

Query: 175 ISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
           I      N   L      +N L       H L  P   L R+ L  
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
               + L+ L L      I  + S A +  PSL+ L +   +    +    F    +L +
Sbjct: 132 FVYLSKLKELWLRN--NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 60  LGMMSTRIALNTNFLQVISE--SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI 117
           L        L    L+ I     +  L  L LS + L         +GL   +HLQ+L++
Sbjct: 190 LN-------LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF-QGL---MHLQKLWM 238

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
             + ++        NL SL  ++++ N LT  +       L  +E+++L +N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 45/262 (17%), Positives = 96/262 (36%), Gaps = 35/262 (13%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L+ +   I  + + L++   ++  ++    F H + LE L        L+ N ++ I   
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQ-------LSRNHIRTIEIG 106

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
               + +L  L L  + L    + I +        L+EL++ +N +     +    + SL
Sbjct: 107 AFNGLANLNTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162

Query: 137 RILDVSS-NQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNE 195
           R LD+    +L+  IS      L+++  L L+  + +    +  L    +L       N 
Sbjct: 163 RRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNH 218

Query: 196 LNAEITQSHSLTAPNF----QLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
           L        ++   +F     L +L +       +       +   L  + L+H  +   
Sbjct: 219 L-------SAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLT-L 269

Query: 252 FPTWLLENNTKLRQLSLVNDSL 273
            P  L      L ++ L ++  
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
           +P  I   T  + LNL  N +  +  ++F +L+H+E L LS N +          L  L 
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 655 VFSVAYNNLSGEIPE 669
              +  N L+  IP 
Sbjct: 116 TLELFDNRLT-TIPN 129

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 37/246 (15%)

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
           +   +  +       +P  I      L L  N++  +      +  ++  L++L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNS 110

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGN 392
           +  +I      G  +L +L L +N L                L+L NN +          
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 393 LTWLQYIIMPN-NHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 450
           +  L  + +     LE  I    F  L  L+ L++   NI   +P+   PL         
Sbjct: 170 VPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLV-------- 218

Query: 451 NMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDL 509
                 L+  ++S N      P    GLS L  L + ++ +          L  L  L+L
Sbjct: 219 -----GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 510 SNNNLH 515
           ++NNL 
Sbjct: 274 AHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 61/332 (18%), Positives = 112/332 (33%), Gaps = 90/332 (27%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
              +      ++ +   IPS+       + L+L  N++   I         +L+ L L  
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNT------RYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 369 NNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISD 427
           N++++   +   + +G        L  L  + + +N L   IP   F  L  L+ L + +
Sbjct: 109 NSIRQ---IEVGAFNG--------LASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRN 156

Query: 428 NNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILG 486
           N I       F+ + S+ ++ L                +L        +GL  L +L LG
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLG------------ELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 487 HNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS 546
             N+  + +  L  L  L+ L++S N+     P  F                        
Sbjct: 205 MCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG---------------------- 240

Query: 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQ-IGNLTRI 605
                                          LS L  L +  ++ +  I       L  +
Sbjct: 241 -------------------------------LSSLKKLWVMNSQ-VSLIERNAFDGLASL 268

Query: 606 QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
             LNL+HN+L  L    F+ L+++  L L +N
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 59/392 (15%), Positives = 117/392 (29%), Gaps = 109/392 (27%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
              +  +   L+ E+P+ +     N + L L  NN+Q    +  ++          +L  
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPS---NTRYLNLMENNIQM---IQADTFR--------HLHH 100

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 455
           L+ + +  N +       F  L  L  L++ DN ++      F  LS             
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS------------- 147

Query: 456 QLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNN----LEGEVLVQLCELNQLQLLDLS 510
           +L+   L  N +        + +  L  L LG       +       L     L+ L+L 
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL---FNLKYLNLG 204

Query: 511 NNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570
                                                          I ++   T     
Sbjct: 205 MC--------------------------------------------NIKDMPNLTP---- 216

Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630
                  L  L  L++S N      P     L+ ++ L + ++ +  +  + F  L  + 
Sbjct: 217 -------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 631 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS-----GEIPEWTAQFATFNESSYEG 684
            L+L++N L+  +PH L   L+ L    + +N  +       +  W  ++   N +    
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTC--- 325

Query: 685 NTFLCGLPLPICRSPATMSEASIGNERDDNLI 716
                      C +P  M    +      +  
Sbjct: 326 --------CGRCHAPMHMRGRYLVEVDQASFQ 349

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 21/186 (11%)

Query: 285 KRLGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDL 341
             L  L++ +N     IP    + L     L+L NN + ++     + + +   L  LDL
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS---LMRLDL 178

Query: 342 SN-NHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPRW 389
                L   I E    G  NL+ L L   N++           E L ++ N      P  
Sbjct: 179 GELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHL 448
              L+ L+ + + N+ +       F  L  L  L+++ NN+S      F PL  + ++HL
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 449 SKNMLH 454
             N  +
Sbjct: 298 HHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 27/226 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
             +  +LE L L  +   I  ++  A +   SL  L +    +  V+    F +   L  
Sbjct: 95  FRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRE 151

Query: 60  LGMMSTRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRG-LCSPVHLQE 114
           L        L  N ++ I       +PSL  L L            +  G      +L+ 
Sbjct: 152 LW-------LRNNPIESIPSYAFNRVPSLMRLDLG----ELKKLEYISEGAFEGLFNLKY 200

Query: 115 LYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIP 174
           L +G  +++  +P  +T L  L  L++S N     I       L+S++KL++ N+   + 
Sbjct: 201 LNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL- 256

Query: 175 ISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
           I        + L      +N L+   +  H L  P   L  L L  
Sbjct: 257 IERNAFDGLASLVELNLAHNNLS---SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
               + L  L L  + +  S+     +  PSL  L +   +    +    F    +L++L
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 61  GMMSTRIALNTNFLQVISE--SMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYI 117
                   L    ++ +     +  L+ L +S      N    +  G       L++L++
Sbjct: 202 N-------LGMCNIKDMPNLTPLVGLEELEMSG-----NHFPEIRPGSFHGLSSLKKLWV 249

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
            ++ +          L SL  L+++ N L+ S+       L  + +L+L +N
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 35/262 (13%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L  +   I  + + L++    +  ++    F H   LE L        L  N ++ I   
Sbjct: 66  LSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQ-------LGRNSIRQIEVG 117

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
               + SL  L L  + L    + I          L+EL++ +N +     +    + SL
Sbjct: 118 AFNGLASLNTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 137 RILDVSS-NQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNE 195
             LD+    +L   IS      L +++ L L   + +    +  L     L+      N 
Sbjct: 174 MRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNH 229

Query: 196 LNAEITQSHSLTAPNF----QLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
                     +   +F     L +L + +     +           L  + L+H  ++  
Sbjct: 230 F-------PEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNLS-S 280

Query: 252 FPTWLLENNTKLRQLSLVNDSL 273
            P  L      L +L L ++  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 59/353 (16%), Positives = 115/353 (32%), Gaps = 78/353 (22%)

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
             S+ +    IP  + + + SL L NN +  +     S L     LQ L L++N +   I
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGIN-TI 91

Query: 351 PEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG-P 409
            E       +L+ L LS N L         +LS     W   L+ L ++ +  N  +   
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLS--------NLS---SSWFKPLSSLTFLNLLGNPYKTLG 140

Query: 410 IPVEFCQLDLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLN 467
               F  L  LQIL + + +    +    F  L+              L+  ++  + L 
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-------------FLEELEIDASDLQ 187

Query: 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527
              P  +  +  +SHLIL        + + +   + ++ L+L + +L             
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF---------- 237

Query: 528 YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS 587
                                           E+    T +++             + ++
Sbjct: 238 -----------------------------HFSELSTGETNSLIK------KFTFRNVKIT 262

Query: 588 CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN 640
              L   +   +  ++ +  L  S N L  +    F  L  ++ + L  N  +
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 53/332 (15%), Positives = 111/332 (33%), Gaps = 80/332 (24%)

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP-LFNH-SRLKTFYA 191
            +++ LD+S+N++T  IS+S L    +++ L L++N      ++E   F+    L+    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
             N L+                   +LSS                               
Sbjct: 108 SYNYLS-------------------NLSSS------------------------------ 118

Query: 252 FPTWLLENNTKLRQLSLVNDSL-----GGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIG 306
                 +  + L  L+L+ +          F        +L +L + N +    I  +  
Sbjct: 119 ----WFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDF 170

Query: 307 DVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363
             L  L    +  + + + +   P SL +++ +  L L        + E       +++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYE---PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQIL 423
           L L + +L      + + LS      L      + + + +  L   +     Q+  L  L
Sbjct: 227 LELRDTDLD---TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 424 DISDNNISGSLPSCFHPL-SIKQVHLSKNMLH 454
           + S N +       F  L S++++ L  N   
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 57/349 (16%), Positives = 111/349 (31%), Gaps = 90/349 (25%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
           SIPS L   + ++ LDLSNN +T  I       CVNLQ+L L++N +     +  +S S 
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT---IEEDSFSS 98

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSI 443
                   L  L+++ +  N+L   +    F  L  L  L++  N             ++
Sbjct: 99  --------LGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK----------TL 139

Query: 444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQ 503
            +  L  ++   Q+ R  + +           GL+ L  L +  ++L+      L  +  
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 504 LQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFE 563
           +  L L        +    D                                        
Sbjct: 200 VSHLILHMKQHILLLEIFVDV--------------------------------------- 220

Query: 564 FTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI--------GNLTRIQTLNLSHNDL 615
                          S +  L+L    L      ++              + + ++   L
Sbjct: 221 --------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 663
              +    + +  +  L+ S N+L   +P  + + L +L+   +  N  
Sbjct: 267 FQ-VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 24/234 (10%)

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
            L  LD+S N    ++       L SL    L  N    L     S   ++  LQIL + 
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTL--GETSLFSHLTKLQILRVG 157

Query: 343 NNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402
           N     +I      G   L+ L +  ++LQ        S     P+ L ++  + ++I+ 
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQ--------SYE---PKSLKSIQNVSHLILH 206

Query: 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DL 461
                  + +       ++ L++ D ++       FH   +     +  +     +   +
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDT-----FHFSELSTGETNSLIKKFTFRNVKI 261

Query: 462 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
           +   L   +   ++ +S L  L    N L+         L  LQ + L  N   
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 48/313 (15%), Positives = 93/313 (29%), Gaps = 58/313 (18%)

Query: 65  TRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
             + L+ N +  IS        +L+ L L+ + + T         L     L+ L +  N
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS-SL---GSLEHLDLSYN 110

Query: 121 DLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
            L  +L       L+SL  L++  N       +S   HLT ++ L + N      I  + 
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE 239
               + L+    D +                  L               PK L    ++ 
Sbjct: 170 FAGLTFLEELEIDAS-----------------DLQSYE-----------PKSLKSIQNVS 201

Query: 240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRG 299
            + L   +         ++  + +  L L            + +     +     N+   
Sbjct: 202 HLILHMKQHI-LLLEIFVDVTSSVECLEL--------RDTDLDTFHFSELSTGETNSLIK 252

Query: 300 HIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359
                      +      +  +L   +   L  +  L  L+ S N L   +P+ +     
Sbjct: 253 ---------KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLT 301

Query: 360 NLQSLALSNNNLQ 372
           +LQ + L  N   
Sbjct: 302 SLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 27/197 (13%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
               ++L +L L G+        S+ S    L+ L +   +    +  + F     LE L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 61  GMMSTRIA-----------------LNTNFLQVISE----SMPSLKYLSLSYSTLGTNSS 99
            + ++ +                  L+     ++ E       S++ L L  + L T   
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 100 RILDRG----LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPL 155
             L  G    L      + + I    L   +   +  ++ L  L+ S NQL  S+     
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 156 IHLTSIEKLYLSNNHFQ 172
             LTS++K++L  N + 
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVN--GVVHGQGFPHFKSLE 58
           L    NL+ L L  +   I+ ++     F SL +L       N    +    F    SL 
Sbjct: 72  LQRCVNLQALVLTSN--GINTIE--EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127

Query: 59  HLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNS--SRILDRGLCSPVHLQELY 116
            L        L  N  + + E+        L    +G     ++I  +       L+EL 
Sbjct: 128 FLN-------LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQI--- 173
           I ++DL+   P  + ++ ++  L +   Q    +    +   +S+E L L +        
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 174 ----PISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
                     L      +     +  L   +   + ++     L  L  S 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.1 bits (229), Expect = 8e-20
 Identities = 72/434 (16%), Positives = 136/434 (31%), Gaps = 71/434 (16%)

Query: 112 LQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
                  + +++ +       L +L  LD  ++ +T     + +  LT + KL  ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN- 75

Query: 172 QIPISLEPLFNHSRLKTFYADNNELNA-EITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
              I+   L  ++ L     D+N+L   ++T    LT          L+           
Sbjct: 76  ---ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT--YLNCDTNKLTKLDVSQNP--- 127

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
                  L  +  +   +        + +NT+L +L    +       L +    +L  L
Sbjct: 128 ------LLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTL 175

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
           D S N     + +    +L  L    N++  LD      L     L  LD S+N LT EI
Sbjct: 176 DCSFNKIT-ELDVSQNKLLNRLNCDTNNITKLD------LNQNIQLTFLDCSSNKLT-EI 227

Query: 351 PEHLAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYII 400
                     L     S N L             L+     L  +I   L + T L Y  
Sbjct: 228 DVT---PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQ 281

Query: 401 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRD 460
                    +  +      L +LD     I+  L    +P  +  ++L+   L       
Sbjct: 282 AEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELDLSQNP-KLVYLYLNNTELT------ 331

Query: 461 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP 520
                    +   V   ++L  L   + +++      + ++  L     +          
Sbjct: 332 --------ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPKE 379

Query: 521 CFDNTTLYESYSNS 534
              N +L  + S  
Sbjct: 380 TLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 68/460 (14%), Positives = 142/460 (30%), Gaps = 95/460 (20%)

Query: 6   NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMST 65
           N          +  +   S   +  +L +L      +  +    G      L  L     
Sbjct: 19  NFASEVAAAFEMQATDTISEEQL-ATLTSLDCHNSSITDM---TGIEKLTGLTKL----- 69

Query: 66  RIALNTNFLQVISES-MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG 124
                +N +  +  S   +L YL+   + L       LD    +   L  L   +N L  
Sbjct: 70  --ICTSNNITTLDLSQNTNLTYLACDSNKLTN-----LDVTPLT--KLTYLNCDTNKLT- 119

Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184
            L   ++    L  L+ + N LT       + H T + +L    N     I+   +   +
Sbjct: 120 KLD--VSQNPLLTYLNCARNTLT----EIDVSHNTQLTELDCHLNKK---ITKLDVTPQT 170

Query: 185 RLKTFYADNNELNA-EITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL 243
           +L T     N++   +++Q+  L        RL+  +                ++  ++L
Sbjct: 171 QLTTLDCSFNKITELDVSQNKLLN-------RLNCDTN---------------NITKLDL 208

Query: 244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPI 303
           +               N +L  L   ++ L     + +    +L   D S N     + +
Sbjct: 209 N--------------QNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELDV 250

Query: 304 EIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363
                L +L+     +  +D      L +   L            E+          L  
Sbjct: 251 STLSKLTTLHCIQTDLLEID------LTHNTQLIYFQAEGCRKIKELDVT---HNTQLYL 301

Query: 364 LALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE 413
           L      +             LYLNN  L+ ++   + + T L+ +   N H++      
Sbjct: 302 LDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-S 356

Query: 414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 453
             ++  L     ++     ++P      +   + +S ++L
Sbjct: 357 VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 66/390 (16%), Positives = 121/390 (31%), Gaps = 63/390 (16%)

Query: 294 NNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEH 353
                  I  E    L SL   N+S+  + G     +  +  L  L  ++N++T  +   
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSITDMTG-----IEKLTGLTKLICTSNNIT-TLD-- 80

Query: 354 LAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN 403
                 NL  LA  +N L             L  + N L+ K+   +     L Y+    
Sbjct: 81  -LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCAR 136

Query: 404 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH----GQLKR 459
           N L     ++      L  LD   N     L        +  +  S N +      Q K 
Sbjct: 137 NTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSFNKITELDVSQNKL 192

Query: 460 ----DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
               +   N +   +   ++   QL+ L    N L     + +  L QL   D S N L 
Sbjct: 193 LNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT 246

Query: 516 GPIPPCFDN-TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
                     TTL+   ++   +D        +      +  Q     +    ++ +   
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEID--------LTHNTQLIYFQAEGCRKIKELDVTH--- 295

Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
               + L  LD     +   +   +    ++  L L++ +L  L     S+   ++SL  
Sbjct: 296 ---NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSC 346

Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            N  +       + ++  L     A     
Sbjct: 347 VNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 86/489 (17%), Positives = 148/489 (30%), Gaps = 83/489 (16%)

Query: 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNF 297
             +   +  +M     T   E    L  L   N S+       I     L  L  ++NN 
Sbjct: 20  FASEVAAAFEMQA-TDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI 76

Query: 298 RGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVG 357
              + +     L  L   +N +  LD      +  +  L  L+   N LT ++       
Sbjct: 77  T-TLDLSQNTNLTYLACDSNKLTNLD------VTPLTKLTYLNCDTNKLT-KLDVS---Q 125

Query: 358 CVNLQSLALSNNNLQE----------GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
              L  L  + N L E           L  + N    K+   +   T L  +    N + 
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 408 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN 467
               ++  Q  LL  L+   NNI+  L             L++N+    L  D S N+L 
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNIT-KLD------------LNQNIQLTFL--DCSSNKLT 225

Query: 468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTT 526
             I   V  L+QL++     N L     + +  L++L  L     +L    +        
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279

Query: 527 LYESYSNS------SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY------- 573
                         +   + + +              I E+       +VY+Y       
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQ--------AAGITELDLSQNPKLVYLYLNNTELT 331

Query: 574 --QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK---- 627
                  + L  L      +       +G +  +     +    I +   T +N      
Sbjct: 332 ELDVSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

Query: 628 -HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 686
              + LD   N +N  I      +      ++ + NLS + P  T  F + N +     T
Sbjct: 390 VSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVT 447

Query: 687 FLCGLPLPI 695
                P PI
Sbjct: 448 TPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 64/384 (16%), Positives = 111/384 (28%), Gaps = 86/384 (22%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +   T L YL    + L     +   S  P L  L+ +   +  +       H   L  L
Sbjct: 102 VTPLTKLTYLNCDTNKLT----KLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTEL 153

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                +     +           L  L  S+     N    LD  +     L  L   +N
Sbjct: 154 DCHLNKKITKLDV-----TPQTQLTTLDCSF-----NKITELD--VSQNKLLNRLNCDTN 201

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
           ++   L   +     L  LD SSN+LT       +  LT +     S N    P++   +
Sbjct: 202 NIT-KLD--LNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVN----PLTELDV 250

Query: 181 FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240
              S+L T +                      L  + L+              H   L  
Sbjct: 251 STLSKLTTLHCIQT-----------------DLLEIDLT--------------HNTQLIY 279

Query: 241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGH 300
            +    +   E     + +NT+L  L      +     L +  + +L  L ++N      
Sbjct: 280 FQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-E 332

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           + +     L SL   N  +        SS+G +  L     +                  
Sbjct: 333 LDVSHNTKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAEGQTI------------T 375

Query: 361 LQSLALSNNNLQEGLYLNNNSLSG 384
           +    L+NN+L   +  +     G
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 68/350 (19%), Positives = 106/350 (30%), Gaps = 86/350 (24%)

Query: 307 DVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL 366
           D   S       M A D     S   +  L  LD  N+ +T ++          L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 426
           ++NN+              +   L   T L Y+   +N L     ++   L  L  L+  
Sbjct: 72  TSNNITT------------LD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCD 114

Query: 427 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILG 486
            N ++             ++ +S+N L   L  + + N L   I   V   +QL+ L   
Sbjct: 115 TNKLT-------------KLDVSQNPLLTYL--NCARNTLT-EID--VSHNTQLTELDCH 156

Query: 487 HNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFF 545
            N       + +    QL  LD S N +    +        L    +N + LD       
Sbjct: 157 LNKKIT--KLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD------- 207

Query: 546 SIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRI 605
                                              L+ LD S NKL   I   +  LT++
Sbjct: 208 -----------------------------LNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235

Query: 606 QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 655
              + S N L  L  ST S L    +L      L         +L   + 
Sbjct: 236 TYFDCSVNPLTELDVSTLSKL---TTLHCIQTDLLEIDLTHNTQLIYFQA 282

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 58/251 (23%), Positives = 87/251 (34%), Gaps = 39/251 (15%)

Query: 283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
            ++            +  +P+ I      ++L  N ++ +     +S    + L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVP---AASFRACRNLTILWLH 64

Query: 343 NNHLTGEIPEHLAVGCVNLQSLALSNN---------------NLQEGLYLNNNSLSGKIP 387
           +N L   I      G   L+ L LS+N                L   L+L+   L    P
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT-LHLDRCGLQELGP 122

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 446
                L  LQY+ + +N L+  +P + F  L  L  L +  N IS      F  L     
Sbjct: 123 GLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH---- 177

Query: 447 HLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQL 504
                     L R  L  NR+   +       L +L  L L  NNL       L  L  L
Sbjct: 178 ---------SLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 505 QLLDLSNNNLH 515
           Q L L++N   
Sbjct: 228 QYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 53/269 (19%), Positives = 83/269 (30%), Gaps = 72/269 (26%)

Query: 373 EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
           + ++L+ N +S            L  + + +N L       F  L LL+ LD+SDN    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 433 SLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIP-DWVDGLSQLSHLILGHNN 489
           S+    FH L              +L    L    L   +      GL+ L +L L  N 
Sbjct: 95  SVDPATFHGLG-------------RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 490 LEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES 549
           L+        +L  L  L L  N +       F                           
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG------------------------- 175

Query: 550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTL 608
                                       L  L  L L  N++   + P    +L R+ TL
Sbjct: 176 ----------------------------LHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTL 206

Query: 609 NLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
            L  N+L  L     + L+ ++ L L++N
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 35/207 (16%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
           ++P  +      Q + L  N ++  +P      C NL  L L +N L          +  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA--------RID- 72

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPS-CFHPLS 442
                   L  L+ + + +N     +    F  L  L  L +    +   L    F  L+
Sbjct: 73  --AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 443 IKQVHLSKNMLHGQLKR-DLSYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVLVQLCE 500
                         L+   L  N L  ++PD     L  L+HL L  N +          
Sbjct: 130 -------------ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 501 LNQLQLLDLSNNNLHGPIPP-CFDNTT 526
           L+ L  L L  N +   + P  F +  
Sbjct: 176 LHSLDRLLLHQNRVAH-VHPHAFRDLG 201

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
                NL  L LH +   ++ + + A +    L+ L +S       V    F     L  
Sbjct: 52  FRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 60  LGMMSTRIALNTNFLQVISES----MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQEL 115
           L        L+   LQ +       + +L+YL L  + L      + D       +L  L
Sbjct: 110 LH-------LDRCGLQELGPGLFRGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHL 158

Query: 116 YIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPI 175
           ++  N +          L SL  L +  N++   +       L  +  LYL  N+    +
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSA-L 216

Query: 176 SLEPLFNHSRLKTFYADNN 194
             E L     L+    ++N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 54/269 (20%), Positives = 86/269 (31%), Gaps = 66/269 (24%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P   Q +++  N +            +L IL + SN L   I ++    L  +E+L LS+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGV 226
           N  Q+  S++P  F+   RL T + D                    L  L          
Sbjct: 90  NA-QLR-SVDPATFHGLGRLHTLHLDRC-----------------GLQELG--------- 121

Query: 227 TFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR 286
             P        L+ + L    +    P     +   L  L L                 R
Sbjct: 122 --PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL--------------HGNR 164

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSN 343
           +    +    FRG         L SL    L  N +  +    P +  ++  L  L L  
Sbjct: 165 ISS--VPERAFRG---------LHSLDRLLLHQNRVAHVH---PHAFRDLGRLMTLYLFA 210

Query: 344 NHLTGEIPEHLAVGCVNLQSLALSNNNLQ 372
           N+L+  +P         LQ L L++N   
Sbjct: 211 NNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 44/214 (20%), Positives = 66/214 (30%), Gaps = 46/214 (21%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDLSNNNLHG 516
            L  NR++            L+ L L  N L   +      L     L+ LDLS+N    
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL---ALLEQLDLSDNAQLR 94

Query: 517 PIPP-CFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY 571
            + P  F       TL+        L                       +F         
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGP--------------------GLFRG------- 127

Query: 572 IYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE 630
                 L+ L  L L  N  +  +P     +L  +  L L  N +  +    F  L  ++
Sbjct: 128 ------LAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            L L  N++    PH   +L  L    +  NNLS
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 53/272 (19%), Positives = 85/272 (31%), Gaps = 77/272 (28%)

Query: 82  PSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDV 141
            + + + L  + +    S +      +  +L  L++ SN L        T L  L  LD+
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 142 SSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP-LFNH-SRLKTFYADNNELNAE 199
           S N    S+  +    L  +  L+L     Q    L P LF   + L+  Y  +N L   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNAL--- 141

Query: 200 ITQSHSLTAPNF----QLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTW 255
                +L    F     L+ L L                        +S +      P  
Sbjct: 142 ----QALPDDTFRDLGNLTHLFLHGN--------------------RISSV------PER 171

Query: 256 LLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---L 312
                  L +L L                          N    H+       L     L
Sbjct: 172 AFRGLHSLDRLLL------------------------HQNRVA-HVHPHAFRDLGRLMTL 206

Query: 313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
           YLF N+++AL      +L  ++ LQ L L++N
Sbjct: 207 YLFANNLSALP---TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L+LL  LDLS N  +  + P     L R+ TL+L    L  L P  F  L  ++ L L +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 637 NKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPE 669
           N L   +P     +L  L    +  N +S  +PE
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 581 LSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
              + L  N+ I  +P         +  L L  N L  +  + F+ L  +E LDLS+N  
Sbjct: 34  SQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 640 NGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 669
              +     H L  L TL    +    L  E+  
Sbjct: 93  LRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGP 122

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 58/302 (19%), Positives = 85/302 (28%), Gaps = 24/302 (7%)

Query: 129 CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT 188
           C  N +  +    S+    G+          S+E L    +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 189 FYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH-DLETVELSHIK 247
                  + + I            L  L+L +    G   P  L     DL  + L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 248 MNGEFPTWLLE----NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPI 303
                  WL E        L+ LS+            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 304 EIGDV------LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVG 357
                      L  L L N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 358 CVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLE 407
              L SL LS   L+            L L+ N L    P     L  +  + +  N   
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFL 309

Query: 408 GP 409
             
Sbjct: 310 DS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 57/356 (16%), Positives = 105/356 (29%), Gaps = 74/356 (20%)

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG 374
           ++++ N L  +     G  + L+ L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI--- 80

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
                + +     R L  ++ LQ + + N  + G  P    +     +  ++  N+S + 
Sbjct: 81  ----PSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 435 PSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 494
              +     + +     +L       ++         + V     LS L L  N   GE 
Sbjct: 136 RDAWLAELQQWLKPGLKVL------SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 495 ----LVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
                +   +   LQ+L L N  +  P   C                             
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA----------------------- 226

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLN 609
                                         L GLDLS N L            +++ +LN
Sbjct: 227 ---------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 610 LSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665
           LS   L  +     + L     LDLS N+L+   P    EL  +   S+  N    
Sbjct: 260 LSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 56/310 (18%), Positives = 90/310 (29%), Gaps = 70/310 (22%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV-NLQSLALS 367
           L  L +    + +        +  +  LQ L L N  +TG  P  L      +L  L L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 427
           N +         ++   ++ +WL     L+ + +   H       +      L  LD+SD
Sbjct: 130 NVSWA-----TRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 428 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH 487
           N   G                                 ++   P     L  L+    G 
Sbjct: 183 NPELGERGL-----------------------------ISALCPLKFPTLQVLALRNAGM 213

Query: 488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI 547
               G          QLQ LDLS+N+L               S    S L        ++
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--------PSCDWPSQL-----NSLNL 260

Query: 548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQT 607
                     + ++ +                 LS LDLS N+L     P    L ++  
Sbjct: 261 SF---T---GLKQVPKGLPAK------------LSVLDLSYNRLDR--NPSPDELPQVGN 300

Query: 608 LNLSHNDLIG 617
           L+L  N  + 
Sbjct: 301 LSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 11/195 (5%)

Query: 31  SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLS 90
           +++   I    + G +   G    + L    +  T     T    ++  + P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----TAPPPLLEATGPDLNILNLR 129

Query: 91  YSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSI 150
             +  T  + + +        L+ L I            +    +L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 151 S---SSPLIHLTSIEKLYLSNNHFQIPISLEP--LFNHSRLKTFYADNNELNAEITQSHS 205
               +   +   +++ L L N   + P  +         +L+     +N L         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 206 LTAPNFQLSRLSLSS 220
                  L+ L+LS 
Sbjct: 250 DWPSQ--LNSLNLSF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 33/175 (18%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +  F  L  L L  +   +     I+++ P                       F +L+ L
Sbjct: 169 VRVFPALSTLDLSDNPE-LGERGLISALCPL---------------------KFPTLQVL 206

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCS-PVHLQELYIGS 119
            + +  +   +     ++ +   L+ L LS+++L            C  P  L  L +  
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL----RDAAGAPSCDWPSQLNSLNLSF 262

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIP 174
             L+  +P  +     L +LD+S N+L     +     L  +  L L  N F   
Sbjct: 263 TGLK-QVPKGL--PAKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 88/470 (18%), Positives = 158/470 (33%), Gaps = 75/470 (15%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMS 64
            +++ L +    L  +    +  +    + + +  C +               + +    
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------EARCKDISS-- 50

Query: 65  TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR 123
              AL  N         P+L  L+L  + LG      + +GL +P   +Q+L + +  L 
Sbjct: 51  ---ALRVN---------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

Query: 124 ----GSLPWCMTNLTSLRILDVSSNQLTGS----ISSSPLIHLTSIEKLYLSNNHFQIPI 175
               G L   +  L +L+ L +S N L  +    +    L     +EKL L         
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-AA 157

Query: 176 SLEPLF----NHSRLKTFYADNNELNAEITQ--SHSLTAPNFQLSRLSLSS---GYEDGV 226
           S EPL          K     NN++N    +     L     QL  L L S     ++  
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 227 TFPKFLYHQHDLETVELS--HIKMNG--EFPTWLLENNTKLRQLSLVNDSLGGP----FR 278
                +  +  L  + L    +   G  E    LL  +++LR L +    +         
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP-------SLYLFNNSMNALDG-SIPSSL 330
             + + + L  L ++ N         + + L        SL++ + S  A       S L
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 331 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK----I 386
              +FL  L +SNN L       L       Q L    + L+  L+L +  +S      +
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELC------QGLGQPGSVLRV-LWLADCDVSDSSCSSL 390

Query: 387 PRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL-----DLLQILDISDNNIS 431
              L     L+ + + NN L     ++  +       LL+ L + D   S
Sbjct: 391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 5e-14
 Identities = 77/416 (18%), Positives = 143/416 (34%), Gaps = 45/416 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFP---SLKNLSISYCEVN--GVVH-GQGFPHF 54
           L      + + L    L  +  + I+S      +L  L++   E+   GV    QG    
Sbjct: 24  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83

Query: 55  K-SLEHLGMMSTRI-ALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VH 111
              ++ L + +  +       L     ++P+L+ L LS + LG    ++L  GL  P   
Sbjct: 84  SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 112 LQELYIGSNDLR----GSLPWCMTNLTSLRILDVSSNQLTGS----ISSSPLIHLTSIEK 163
           L++L +    L       L   +      + L VS+N +  +    +          +E 
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 164 LYLSNNHF---QIPISLEPLFNHSRLKTFYADNNELNAEITQ--SHSLTAPNFQLSRLSL 218
           L L +              + + + L+     +N+L           L  P+ +L  L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 219 SS---GYEDGVTFPKFLYHQHDLETVELS--HIKMNG--EFPTWLLENNTKLRQLSLVND 271
                  +      + L  +  L+ + L+   +   G       LLE   +L  L + + 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 272 SLGGPFRLPI----HSHKRLGMLDISNNNFRGHIPIEIGDVLPS-------LYLFNNSMN 320
           S               ++ L  L ISNN        E+   L         L+L +  ++
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 321 ALD-GSIPSSLGNMKFLQILDLSNNHLTGE----IPEHLAVGCVNLQSLALSNNNL 371
                S+ ++L     L+ LDLSNN L       + E +      L+ L L +   
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 67/420 (15%), Positives = 137/420 (32%), Gaps = 79/420 (18%)

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLF----NHSRLKTF 189
             ++ LD+   +L+ +  +  L  L   + + L +         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 190 YADNNELNAEITQ--SHSLTAPNFQLSRLSLSS---GYEDGVTFPKFLYHQHDLETVELS 244
              +NEL           L  P+ ++ +LSL +              L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 245 HIKMNGE----FPTWLLENNTKLRQLSLVNDSLG----GPFRLPIHSHKRLGMLDISNNN 296
              +           LL+   +L +L L   SL      P    + +      L +SNN+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 297 FRGHIPIEIGDVLP-------SLYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTG 348
                   +   L        +L L +  + + +   +   + +   L+ L L +N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK----IPRWLGNLTWLQYIIMPNN 404
                   G   L    L  ++    L++    ++ K    + R L     L+ + +  N
Sbjct: 242 V-------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294

Query: 405 HLEGPIPVEFCQLDL-----LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 459
            L        C+  L     L+ L +   + +    +C    S     L++N        
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSS---VLAQN-------- 340

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL-----NQLQLLDLSNNNL 514
                               L  L + +N LE   + +LC+      + L++L L++ ++
Sbjct: 341 ------------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 5e-13
 Identities = 75/424 (17%), Positives = 136/424 (32%), Gaps = 67/424 (15%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIF----PSLKNLSISYCEVN--GVVH-GQGFPH 53
           L     L  L L  + L    +  +          ++ LS+  C +   G          
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 54  FKSLEHLGMMSTRIALNTNFLQVISESM----PSLKYLSLSYSTLGTNSSRILDRGLCSP 109
             +L+ L +    +      LQ++ E +      L+ L L Y +L   S   L   L + 
Sbjct: 112 LPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169

Query: 110 VHLQELYIGSNDLRGS--------LPWCMTNLTSLRILDVSSNQLTG---SISSSPLIHL 158
              +EL + +ND+  +        L      L +L++    S  +T          +   
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL---ESCGVTSDNCRDLCGIVASK 226

Query: 159 TSIEKLYLSNNHFQ----IPISLEPLFNHSRLKTFYADNNELNAEITQ--SHSLTAPNFQ 212
            S+ +L L +N         +    L   SRL+T +     + A+        L A    
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KES 285

Query: 213 LSRLSLSS---GYEDGVTFPKFLYHQH-DLETVELSHIKMNGEFPTWL---LENNTKLRQ 265
           L  LSL+    G E      + L      LE++ +          +     L  N  L +
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 266 LSLVNDSLGGP-----FRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS------LYL 314
           L + N+ L         +        L +L +++ +        +   L +      L L
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 315 FNNSM-----NALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNN 369
            NN +       L  S+         L+ L L + + + E           LQ+L     
Sbjct: 406 SNNCLGDAGILQLVESVRQ---PGCLLEQLVLYDIYWSEE-------MEDRLQALEKDKP 455

Query: 370 NLQE 373
           +L+ 
Sbjct: 456 SLRV 459

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 1e-10
 Identities = 71/464 (15%), Positives = 139/464 (29%), Gaps = 92/464 (19%)

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPI----HSHKRLGMLDI 292
           D++++++   +++      LL    + + + L +  L       I      +  L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 293 SNNNFRGHIPIEIGDVLPS-------LYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNN 344
            +N         +   L +       L L N  +     G + S+L  +  LQ L LS+N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
            L     + L       + L      L++ L L   SLS      L ++      +    
Sbjct: 124 LLGDAGLQLLC------EGLLDPQCRLEK-LQLEYCSLSAASCEPLASV------LRAKP 170

Query: 405 HLEGPIPVEFCQLDLLQILDISDNNISGS----LPSCF--HPLSIKQVHLSKNMLHGQLK 458
                           + L +S+N+I+ +    L       P  ++ + L    +     
Sbjct: 171 DF--------------KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 459 RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-----LNQLQLLDLSNNN 513
           RDL            V   + L  L LG N L    + +LC       ++L+ L +    
Sbjct: 217 RDLC---------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 514 LHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
           +            L        SL    E+  +         + + E             
Sbjct: 268 ITAK-----GCGDLCRVLRAKESLK---ELSLAGNELGDEGARLLCETLLEPGCQ----- 314

Query: 574 QGKVLSLLSGLDLSCNKL----IGPIPPQIGNLTRIQTLNLSHNDL-----IGLIPSTFS 624
                  L  L +                +     +  L +S+N L       L      
Sbjct: 315 -------LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 625 NLKHVESLDLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLS 664
               +  L L++  ++      +   L+   +L    ++ N L 
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 73/423 (17%), Positives = 131/423 (30%), Gaps = 91/423 (21%)

Query: 290 LDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNNH 345
           LDI           E+  +L     + L +  +       I S+L     L  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK----IPRWLGNLTWLQYIIM 401
           L       +       Q L   +  +Q+ L L N  L+G     +   L  L  LQ + +
Sbjct: 68  LGDVGVHCVL------QGLQTPSCKIQK-LSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 402 PNNHLEGPIPVEFCQLDL-----LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 456
            +N L        C+  L     L+ L +   ++S +       +   +    +      
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE------ 174

Query: 457 LKRDLSYNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVLVQLCEL----NQLQLL 507
           L   +S N +N + +     GL     QL  L L    +  +    LC +      L+ L
Sbjct: 175 L--TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 508 DLSNNNLH---------GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
            L +N L          G + P     TL+                              
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG------------------------- 267

Query: 559 HEIFEFTTKNIVYIYQG-KVLSLLSGLDLSCNKLIGPIPPQIGNL-----TRIQTLNLSH 612
                 T K    + +  +    L  L L+ N+L       +         ++++L +  
Sbjct: 268 -----ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 613 NDL----IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-----KTLEVFSVAYNNL 663
                       S  +  + +  L +SNN+L      +L +        L V  +A  ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 664 SGE 666
           S  
Sbjct: 383 SDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 46/288 (15%), Positives = 81/288 (28%), Gaps = 62/288 (21%)

Query: 420 LQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNML--------------HGQLKR-DLS 462
           +Q LDI    +S              + V L    L              +  L   +L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 463 YNRLNGS-IPDWVDGLS----QLSHLILGHNNLEGEVLVQLCEL----NQLQLLDLSNNN 513
            N L    +   + GL     ++  L L +  L G     L         LQ L LS+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 514 LHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
           L                 +    L E       +  PQ  +EK   E    +  +   + 
Sbjct: 125 L---------------GDAGLQLLCE------GLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 574 QG-KVLSLLSGLDLSCNKLIGPIPPQIG-----NLTRIQTLNLSHNDL----IGLIPSTF 623
              +       L +S N +       +      +  +++ L L    +       +    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 624 SNLKHVESLDLSNNKLNGK-----IPHQLVELKTLEVFSVAYNNLSGE 666
           ++   +  L L +NKL         P  L     L    +    ++ +
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 54/227 (23%), Positives = 83/227 (36%), Gaps = 29/227 (12%)

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           IP  +     +L L  N +  L      S  +   LQ+LDLS   +   I +       +
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 361 LQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL- 406
           L +L L+ N +Q             + L     +L+      +G+L  L+ + + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 407 EGPIPVEFCQLDLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRDLSYNR 465
              +P  F  L  L+ LD+S N I  S+       L          M    L  DLS N 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH--------QMPLLNLSLDLSLNP 188

Query: 466 LNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
           +N  I        +L  L L  N L+         L  LQ + L  N
Sbjct: 189 MN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 50/271 (18%), Positives = 78/271 (28%), Gaps = 77/271 (28%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGS 433
           L L+ N L         +   LQ + +    ++  I    +  L  L  L ++ N I  S
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 434 LPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL 490
           L    F  LS              L++       L  S+ ++    L  L  L + HN +
Sbjct: 91  LALGAFSGLS-------------SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLI 136

Query: 491 ----EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS 546
                 E    L     L+ LDLS+N +                                
Sbjct: 137 QSFKLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLH-------------------- 173

Query: 547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQ 606
                                        ++  L   LDLS N +   I P      R++
Sbjct: 174 -----------------------------QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLK 203

Query: 607 TLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
            L L  N L  +    F  L  ++ + L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 65  TRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
             + L+ N L+ +      S P L+ L LS   + T         L    HL  L +  N
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SL---SHLSTLILTGN 86

Query: 121 DLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
            ++ SL     + L+SL+ L      L  S+ + P+ HL ++++L +++N  Q    L  
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKLPE 143

Query: 180 LFNH-SRLKTFYADNNEL 196
            F++ + L+     +N++
Sbjct: 144 YFSNLTNLEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 58/277 (20%), Positives = 90/277 (32%), Gaps = 76/277 (27%)

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP-LFNH-SRLKTFYA 191
            S + LD+S N L   + S        ++ L LS    Q   ++E   +   S L T   
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLIL 83

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
             N                  +   SL+ G   G++          L+ +          
Sbjct: 84  TGN-----------------PIQ--SLALGAFSGLS---------SLQKLVA-------- 107

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311
                    T L  L         P        K L  L++++N  +     E    L +
Sbjct: 108 -------VETNLASLE------NFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 312 L---YLFNNSMNALDGSIPSSLGNMKFLQI-LDLSNNHLTGEIPEHLAVGCVNLQSLALS 367
           L    L +N + ++  +    L  M  L + LDLS N +   I    A   + L+ LAL 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLKELALD 208

Query: 368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
            N L+        S+   I      LT LQ I +  N
Sbjct: 209 TNQLK--------SVPDGI---FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSIAS-IF---PSLKNLSISYCEVNGVVHGQGFPHFKSL 57
            + ++L  L L G+      +QS+A   F    SL+ L      +  + +     H K+L
Sbjct: 73  QSLSHLSTLILTGN-----PIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTL 126

Query: 58  EHLGMMSTRIALNTNFLQVISE-----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHL 112
           + L        +  N +Q         ++ +L++L LS + + +     L      P+  
Sbjct: 127 KELN-------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 113 QELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
             L +  N +   +         L+ L + +NQL  S+       LTS++K++L  N + 
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 55/207 (26%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
            +F  L+ L L         +Q+I    + SL +L                         
Sbjct: 49  FSFPELQVLDLSRCE-----IQTIEDGAYQSLSHL------------------------- 78

Query: 61  GMMSTRIALNTNFLQVIS----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
               + + L  N +Q ++      + SL+ L        TN + + +  +     L+EL 
Sbjct: 79  ----STLILTGNPIQSLALGAFSGLSSLQKLVAVE----TNLASLENFPIGHLKTLKELN 130

Query: 117 IGSNDLRGSLPWCMT--NLTSLRILDVSSNQLTGSISSSPLIHLTSIE----KLYLSNNH 170
           +  N ++ S        NLT+L  LD+SSN++  SI  + L  L  +      L LS N 
Sbjct: 131 VAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 171 FQIPISLEP-LFNHSRLKTFYADNNEL 196
                 ++P  F   RLK    D N+L
Sbjct: 189 MN---FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 55/220 (25%)

Query: 460 DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDLSNNNLH 515
           DLS+N L   +  +      +L  L L    +   E      L   + L  L L+ N + 
Sbjct: 34  DLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTGNPIQ 89

Query: 516 GPIPP-CFDN----TTLYESYSNSSSLDEQ-FEIFFSIESPQGNVEKQIHEIFEFTTKNI 569
             +    F        L    +N +SL+                                
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPIGH-------------------------- 122

Query: 570 VYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628
                   L  L  L+++ N +     P+   NLT ++ L+LS N +  +  +    L  
Sbjct: 123 --------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 629 VE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           +     SLDLS N +N  I     +   L+  ++  N L 
Sbjct: 175 MPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 584 LDLSCNKLIGPIPP-QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL--- 639
           LDLS N  +  +      +   +Q L+LS  ++  +    + +L H+ +L L+ N +   
Sbjct: 33  LDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 640 NGKIPHQLVELKTL 653
                  L  L+ L
Sbjct: 92  ALGAFSGLSSLQKL 105

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 44/212 (20%), Positives = 78/212 (36%), Gaps = 39/212 (18%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN----LQEG------ 374
            IPS   +    Q L L   HL   IP H      N+  + +S +     L+        
Sbjct: 25  RIPSLPPS---TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 375 ----LYL-NNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDN 428
               + + N  +L+   P  L  L  L+++ + N  L+  P   +    D+  IL+I+DN
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 429 NISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH 487
               S+P   F  L  + + L            L  N    S+  +    ++L  + L  
Sbjct: 141 PYMTSIPVNAFQGLCNETLTL-----------KLYNNGFT-SVQGYAFNGTKLDAVYLNK 188

Query: 488 NN----LEGEVLVQLCELNQLQLLDLSNNNLH 515
           N     ++ +    +       LLD+S  ++ 
Sbjct: 189 NKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPS-TFSNLKHVESLDLS 635
           L  +S + +S +  +  +      NL+++  + + +   +  I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 636 NNKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEIPE 669
           N  L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLS 342
           ++  ++I N     +I  +    LP L    +FN  +        + + +     IL+++
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL--TKVYSTDIFFILEIT 138

Query: 343 NNHLTGEIPEHLAVGCVN-LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYI-I 400
           +N     IP +   G  N   +L L NN                +  +  N T L  + +
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------------VQGYAFNGTKLDAVYL 186

Query: 401 MPNNHLEGPIPVEFCQL-DLLQILDISDNNISGSLPS-CFHPLS 442
             N +L       F  +     +LD+S  +++ +LPS     L 
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 41/288 (14%), Positives = 83/288 (28%), Gaps = 68/288 (23%)

Query: 358 CVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
           C   +   ++  ++Q             IP         Q + +   HL       F  L
Sbjct: 10  CHQEEDFRVTCKDIQR------------IP---SLPPSTQTLKLIETHLRTIPSHAFSNL 54

Query: 418 DLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV- 474
             +  + +S +     L S  F+ LS             ++   ++   R    I     
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLS-------------KVTHIEIRNTRNLTYIDPDAL 101

Query: 475 DGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYS 532
             L  L  L + +  L+    L ++   +   +L++++N     IP   F          
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC------ 155

Query: 533 NSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLS--GLDLSCNK 590
                +E   +         N       +            QG   +      + L+ NK
Sbjct: 156 -----NETLTLKLY-----NN---GFTSV------------QGYAFNGTKLDAVYLNKNK 190

Query: 591 LIGPIPPQI--GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
            +  I      G  +    L++S   +  L      +LK + + +   
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 43/275 (15%), Positives = 87/275 (31%), Gaps = 67/275 (24%)

Query: 105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL 164
             C     ++  +   D++  +P   +   S + L +    L  +I S    +L +I ++
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRI 60

Query: 165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYED 224
           Y+S                                          +  L +L      E 
Sbjct: 61  YVSI-----------------------------------------DVTLQQL------ES 73

Query: 225 GVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHS 283
                   Y+   +  +E+ + +         L+    L+ L + N  L   P    ++S
Sbjct: 74  HS-----FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 284 HKRLGMLDISNNNFRGHIPIEIGDVLPS----LYLFNNSMNALDGSIPSSLGNMKFLQIL 339
                +L+I++N +   IP+     L +    L L+NN       S+     N   L  +
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT----SVQGYAFNGTKLDAV 184

Query: 340 DLSNNHLTGEIPEHLAVGCVN-LQSLALSNNNLQE 373
            L+ N     I +    G  +    L +S  ++  
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 74  LQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPW-CMTN 132
           +Q I    PS + L L  + L T  S      L    ++  +Y+  +     L      N
Sbjct: 23  IQRIPSLPPSTQTLKLIETHLRTIPSHAF-SNL---PNISRIYVSIDVTLQQLESHSFYN 78

Query: 133 LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD 192
           L+ +  +++ + +    I    L  L  ++ L + N   ++   L  +++          
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 193 NNELNAEITQSHSLTAPNFQLSRLSLSS 220
           +N     I   ++      +   L L +
Sbjct: 139 DNPYMTSI-PVNAFQGLCNETLTLKLYN 165

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 49/218 (22%)

Query: 460 DLSYNRLNGSIPDWV-DGLSQLSHLILGHNN----LEGEVLVQLCELNQLQLLDLSNNNL 514
            L    L  +IP      L  +S + +  +     LE      L   +++  +++ N   
Sbjct: 37  KLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEIRNTRN 92

Query: 515 HGPIPP-CFDNTTLYES---YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570
              I P       L +    ++                         +    + T     
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNT-----------------------GLKMFPDLT----- 124

Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQI--GNLTRIQTLNLSHNDLIGLIPSTFSNLKH 628
              +     +   L+++ N  +  IP     G      TL L +N    +    F+  K 
Sbjct: 125 ---KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK- 180

Query: 629 VESLDLSNNKLNGKIP-HQLVELKT-LEVFSVAYNNLS 664
           ++++ L+ NK    I       + +   +  V+  +++
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 8e-14
 Identities = 42/244 (17%), Positives = 78/244 (31%), Gaps = 38/244 (15%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
                +     IP ++      L      +  +      +      L+ +++S N +   
Sbjct: 14  FLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQ---KGAFSGFGDLEKIEISQNDVLEV 69

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP 409
           I   +      L  + +             N+L    P    NL  LQY+++ N  ++  
Sbjct: 70  IEADVFSNLPKLHEIRIE----------KANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119

Query: 410 IPVEFCQLDLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNG 468
             V         +LDI DN    ++    F  LS + V L            L+ N +  
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-----------WLNKNGIQ- 167

Query: 469 SIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCE-----LNQLQLLDLSNNNLHGPIPPCF 522
            I +   +G       +  +NNLE     +L        +   +LD+S   +H       
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLE-----ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 523 DNTT 526
           +N  
Sbjct: 223 ENLK 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 37/284 (13%), Positives = 73/284 (25%), Gaps = 66/284 (23%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P +  EL      LR       +    L  +++S N +   I +    +L  + ++ +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 169 -NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
            N+    I+ E   N   L+     N  +         L   +                 
Sbjct: 89  ANNLLY-INPEAFQNLPNLQYLLISNTGI-------KHLPDVHKI--------------- 125

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
                 H      +++                N  +  +          F          
Sbjct: 126 ------HSLQKVLLDIQD--------------NINIHTIE------RNSFV---GLSFES 156

Query: 288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT 347
            +L ++ N  +  I     +      L  +  N L+              ILD+S   + 
Sbjct: 157 VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 348 GEIPEHLAVGCVNLQSLALSNN----------NLQEGLYLNNNS 381
             +P +       L++ +  N            L E   L   S
Sbjct: 216 -SLPSYGLENLKKLRARSTYNLKKLPTLEKLVALME-ASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 46/269 (17%), Positives = 81/269 (30%), Gaps = 50/269 (18%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
                + ++ +IP  L        +      L       F     L+ ++IS N++   +
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 435 PS-CFHPL-SIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 491
            +  F  L  + ++ + K             N L   I       L  L +L++ +  ++
Sbjct: 71  EADVFSNLPKLHEIRIEKA------------NNLL-YINPEAFQNLPNLQYLLISNTGIK 117

Query: 492 GEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
               V      Q  LLD+ +N     I    F   +       S  L             
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-----FESVILW-----------L 161

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLN 609
             N    I EI                  L   L+LS N  +  +P  +    +    L+
Sbjct: 162 NKN---GIQEIHNSAFNG---------TQLDE-LNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 610 LSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
           +S   +  L      NLK + +    N K
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/257 (12%), Positives = 61/257 (23%), Gaps = 72/257 (28%)

Query: 420 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGL 477
              L      +       F                  L++ ++S N +   I   V   L
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFG-------------DLEKIEISQNDVLEVIEADVFSNL 78

Query: 478 SQLSHLILGHNNLEGEVLVQLCE-LNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS 536
            +L  + +   N    +  +  + L  LQ L +SN                         
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT------------------------ 114

Query: 537 LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP 596
                                I  + +    +               LD+  N  I  I 
Sbjct: 115 --------------------GIKHLPDVHKIH---------SLQKVLLDIQDNINIHTIE 145

Query: 597 PQI--GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
                G       L L+ N +  +  S F+  +  E     NN L               
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 655 VFSVAYNNLSGEIPEWT 671
           +  ++   +   +P + 
Sbjct: 206 ILDISRTRIH-SLPSYG 221

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 51/223 (22%), Positives = 78/223 (34%), Gaps = 41/223 (18%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
              +     ++ AL   +P          IL LS N L         +    L  L L  
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDT------TILHLSENLLY-TFSLATLMPYTRLTQLNLDR 64

Query: 369 NNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 428
             L +            +    G L  L  + + +N L+  +P+    L  L +LD+S N
Sbjct: 65  AELTK------------LQVD-GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110

Query: 429 NISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLIL 485
            ++ SLP      L              +L+   L  N L  ++P  +     +L  L L
Sbjct: 111 RLT-SLPLGALRGLG-------------ELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155

Query: 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTL 527
            +NNL       L  L  L  L L  N+L+  IP   F +  L
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 25/196 (12%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
             +   L L  +   +       +       L+    +   +   Q       L  L   
Sbjct: 30  PKDTTILHLSEN--LLYTFS--LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD-- 83

Query: 64  STRIALNTNFLQVIS---ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
                L+ N LQ +    +++P+L  L +S++ L +     L         LQELY+  N
Sbjct: 84  -----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGN 134

Query: 121 DLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLE 178
           +L+ +LP   +T    L  L +++N LT  + +  L  L +++ L L  N    IP   +
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP---K 189

Query: 179 PLFNHSRLKTFYADNN 194
             F    L   +   N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 39/216 (18%)

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           +P ++      L+L  N +     +          L  L+L    LT ++   +      
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMPYTR---LTQLNLDRAELT-KLQ--VDGTLPV 78

Query: 361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDL 419
           L +L LS+N LQ             +P     L  L  + +  N L   +P+     L  
Sbjct: 79  LGTLDLSHNQLQS------------LPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125

Query: 420 LQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DG 476
           LQ L +  N +  +LP     P               +L++  L+ N L   +P  + +G
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTP-------------KLEKLSLANNNLT-ELPAGLLNG 170

Query: 477 LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
           L  L  L+L  N+L   +       + L    L  N
Sbjct: 171 LENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 18/192 (9%)

Query: 261 TKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN 320
                L L  + L       +  + RL  L++          +++   LP L   + S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNN 380
            L  S+P     +  L +LD+S N LT  +P     G   LQ L L  N L+        
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-------- 137

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFH 439
           +L   +      L  L    + NN+L   +P      L+ L  L + +N++       F 
Sbjct: 138 TLPPGLLTPTPKLEKLS---LANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 440 PLSIKQVHLSKN 451
              +    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 43/200 (21%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
            LS N L       +   ++L+ L L    L    L     L  L  LDLS+N L   +P
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQS-LP 93

Query: 520 PCFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG 575
                    T L  S++  +SL            P G                       
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSL------------PLG--------ALR------------ 121

Query: 576 KVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
             L  L  L L  N+L   +PP +     +++ L+L++N+L  L     + L+++++L L
Sbjct: 122 -GLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 635 SNNKLNGKIPHQLVELKTLE 654
             N L   IP        L 
Sbjct: 180 QENSLYT-IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 52/240 (21%), Positives = 72/240 (30%), Gaps = 68/240 (28%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P     L++  N L       +   T L  L++   +LT          L  +  L LS+
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSH 86

Query: 169 NHFQIPISLEPLFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT 227
           N  Q   SL  L      L       N L                    SL  G   G+ 
Sbjct: 87  NQLQ---SLPLLGQTLPALTVLDVSFNRLT-------------------SLPLGALRGLG 124

Query: 228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRL 287
             + LY    L+  EL  +      P  LL    KL +LSL                   
Sbjct: 125 ELQELY----LKGNELKTL------PPGLLTPTPKLEKLSL------------------- 155

Query: 288 GMLDISNNNFRGHIPIEIGDVLPSL---YLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
                +NNN    +P  + + L +L    L  NS+     +IP        L    L  N
Sbjct: 156 -----ANNNLT-ELPAGLLNGLENLDTLLLQENSLY----TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           L +L  LDLS N+L   +P     L  +  L++S N L  L       L  ++ L L  N
Sbjct: 76  LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 638 KLNGKIPH----QLVELKTLEVFSVAYNNLSGEIPE 669
           +L   +P        +L+ L   S+A NNL+ E+P 
Sbjct: 135 ELK-TLPPGLLTPTPKLEKL---SLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 55/273 (20%), Positives = 90/273 (32%), Gaps = 88/273 (32%)

Query: 127 PWC-MTNLTSLRILDVSSNQLTGSISSS-PLIHLTSIEKLYLSNNHFQIPISLEP-LFNH 183
           P C ++ + S   ++     LT ++    P         L+LS N      +        
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLY---TFSLATLMP 53

Query: 184 -SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE 242
            +RL     D                   +L++L +                   L T++
Sbjct: 54  YTRLTQLNLDRA-----------------ELTKLQVDG-------------TLPVLGTLD 83

Query: 243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIP 302
           LSH                +L+ L L+  +L             L +LD+S N     +P
Sbjct: 84  LSH---------------NQLQSLPLLGQTLP-----------ALTVLDVSFNRLT-SLP 116

Query: 303 IEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359
           +     L     LYL  N +  L   + +       L+ L L+NN+LT E+P  L  G  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPK---LEKLSLANNNLT-ELPAGLLNGLE 172

Query: 360 NLQSLALSNNNLQ------------EGLYLNNN 380
           NL +L L  N+L                +L+ N
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 2e-13
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 27/197 (13%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
            +   +++ +    ++  I  +Q I    P++  L ++    N +   +   + K+L  L
Sbjct: 39  QNELNSIDQIIA--NNSDIKSVQGIQY-LPNVTKLFLNG---NKLTDIKPLTNLKNLGWL 92

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGS 119
            +   +I   ++      + +  LK LSL         + I D  GL     L+ LY+G+
Sbjct: 93  FLDENKIKDLSSL-----KDLKKLKSLSLE-------HNGISDINGLVHLPQLESLYLGN 140

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
           N +       ++ LT L  L +  NQ++      PL  LT ++ LYLS NH      L  
Sbjct: 141 NKITDITV--LSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRA 192

Query: 180 LFNHSRLKTFYADNNEL 196
           L     L      + E 
Sbjct: 193 LAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 35/283 (12%)

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLY 376
                       +L    +T  + ++      ++  +  +N++++             L+
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 71

Query: 377 LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436
           LN N L+   P  L NL  L ++ +  N ++         L  L+ L +  N IS  +  
Sbjct: 72  LNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DING 126

Query: 437 CFHPLSIKQVHLSKNMLHG--------QLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGH 487
             H   ++ ++L  N +          +L    L  N+++  I   + GL++L +L L  
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 184

Query: 488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI 547
           N++    L  L  L  L +L+L +            N  +  +  N    D        I
Sbjct: 185 NHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN---TDGSLVTPEII 239

Query: 548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNK 590
                  +  +       T  + +I+   V    +        
Sbjct: 240 SDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 5e-13
 Identities = 44/300 (14%), Positives = 108/300 (36%), Gaps = 55/300 (18%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
              +  +    +  ++      L S+  +  +++ +    S   + +L ++ KL+L+ N 
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNK 76

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                 ++PL N   L   + D N++  +++    L     +L  LSL            
Sbjct: 77  LT---DIKPLTNLKNLGWLFLDENKIK-DLSSLKDLK----KLKSLSLEH---------- 118

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
                + +  +               L +  +L  L L N+ +       +    +L  L
Sbjct: 119 -----NGISDING-------------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
            + +N     +P+     L +LYL  N ++ L      +L  +K L +L+L +     + 
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQECLNKP 213

Query: 351 PEHLAVGCVNLQSLALSNNNL------QEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
             H +   V   ++  ++ +L       +       ++   +P +   ++++ Y  +   
Sbjct: 214 INHQSN-LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 50/277 (18%), Positives = 109/277 (39%), Gaps = 38/277 (13%)

Query: 25  IASIFP--SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVIS--ES 80
           I  IFP  +         +   V          S++ +         N + ++ +   + 
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQI-------IANNSDIKSVQGIQY 63

Query: 81  MPSLKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRIL 139
           +P++  L L+        +++ D + L +  +L  L++  N ++  L   + +L  L+ L
Sbjct: 64  LPNVTKLFLNG-------NKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL 114

Query: 140 DVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAE 199
            +  N ++     + L+HL  +E LYL NN  +I   +  L   ++L T   ++N+++ +
Sbjct: 115 SLEHNGIS---DINGLVHLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS-D 167

Query: 200 ITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLEN 259
           I     LT    +L  L LS   ++ ++  + L    +L+ +EL   +   +       N
Sbjct: 168 IVPLAGLT----KLQNLYLS---KNHISDLRALAGLKNLDVLELFSQECLNKPINH-QSN 219

Query: 260 NTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
                 +   + SL  P    I         ++  + 
Sbjct: 220 LVVPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 1e-11
 Identities = 48/289 (16%), Positives = 106/289 (36%), Gaps = 36/289 (12%)

Query: 79  ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRI 138
           ++       +L   ++    +            + ++   ++D++ S+   +  L ++  
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 69

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA 198
           L ++ N+LT      PL +L ++  L+L  N  +I   L  L +  +LK+   ++N ++ 
Sbjct: 70  LFLNGNKLT---DIKPLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 199 EITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLE 258
           +I     L     QL  L L +   + +T    L     L+T+ L   +++   P   L 
Sbjct: 123 DINGLVHLP----QLESLYLGN---NKITDITVLSRLTKLDTLSLEDNQISDIVP---LA 172

Query: 259 NNTKLRQLSLVN---DSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD--VLPSLY 313
             TKL+ L L       L       +   K L +L++ +            +  V  ++ 
Sbjct: 173 GLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 314 LFNNSMNALDG-SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 361
             + S+   +  S             L    N ++    + + +G    
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 7e-11
 Identities = 51/324 (15%), Positives = 103/324 (31%), Gaps = 56/324 (17%)

Query: 371 LQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 430
           + E     +  +    P             +    +   +     +L+ +  +  ++++I
Sbjct: 1   MGE-TITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI 55

Query: 431 SGSLPSCFHPLSIKQVHLSKNMLH-----GQLKR----DLSYNRLNGSIPDWVDGLSQLS 481
             S+    +  ++ ++ L+ N L        LK      L  N++   +   +  L +L 
Sbjct: 56  K-SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLK 112

Query: 482 HLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQF 541
            L L HN +    +  L  L QL+ L L NN +                 S  + LD   
Sbjct: 113 SLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDI-----------TVLSRLTKLDT-- 157

Query: 542 EIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGN 601
               S+   + N   QI +I                L+ L  L LS N  I  +   +  
Sbjct: 158 ---LSL---EDN---QISDIVPLAG-----------LTKLQNLYLSKNH-ISDLRA-LAG 195

Query: 602 LTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 661
           L  +  L L   + +    +  SNL    ++  ++  L    P  + +    E  +V ++
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWH 253

Query: 662 NLSGEIPEWTAQFATFNESSYEGN 685
                       +        +  
Sbjct: 254 LPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 45/291 (15%), Positives = 85/291 (29%), Gaps = 61/291 (20%)

Query: 153 SPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ 212
            P        K  L                 + +    A+N+                  
Sbjct: 15  FPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-----------------D 54

Query: 213 LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDS 272
           +  +               + +  ++  + L+  K+    P   L N   L  L L  + 
Sbjct: 55  IKSVQ-------------GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK 98

Query: 273 LGGPFRL-PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLG 331
           +     L  +   K+L  L + +N       +     L SLYL NN +  +     + L 
Sbjct: 99  IK---DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLS 150

Query: 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNN 380
            +  L  L L +N ++ +I      G   LQ+L LS N++            + L L + 
Sbjct: 151 RLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
               K      NL     +   +  L  P  +        +  ++  +   
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 19/173 (10%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           L +   L+ L+L  +   IS +  +    P L++L +     N +           L+ L
Sbjct: 105 LKDLKKLKSLSLEHN--GISDINGLVH-LPQLESLYLGN---NKITDITVLSRLTKLDTL 158

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGS 119
            +   +I+            +  L+ L LS +        I D R L    +L  L + S
Sbjct: 159 SLEDNQISDIVPL-----AGLTKLQNLYLSKN-------HISDLRALAGLKNLDVLELFS 206

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
            +         +NL     +  +   L      S           +       
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 38/205 (18%)

Query: 326 IPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK 385
           IP+        + LDL +N L+  +P         L+ L L++N LQ        +L   
Sbjct: 35  IPADT------KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ--------TLPAG 79

Query: 386 IPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPS-CFHPLSI 443
           I + L NL  L    + +N L+  +P+  F QL  L  L +  N +  SLP   F  L+ 
Sbjct: 80  IFKELKNLETLW---VTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT- 133

Query: 444 KQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCEL 501
                       +L    L YN L  S+P  V D L+ L  L L +N L+        +L
Sbjct: 134 ------------KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTT 526
            +L+ L L NN L       FD+  
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%)

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           IP  I      L L +N +++L       L     L++L L++N L   +P  +     N
Sbjct: 31  IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTK---LRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDL 419
           L++L +++N LQ        +L   +   L NL  L+   +  N L+  +P   F  L  
Sbjct: 87  LETLWVTDNKLQ--------ALPIGVFDQLVNLAELR---LDRNQLKS-LPPRVFDSLTK 134

Query: 420 LQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DG 476
           L  L +  N +  SLP   F  L+              LK   L  N+L   +P+   D 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLT-------------SLKELRLYNNQLK-RVPEGAFDK 179

Query: 477 LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
           L++L  L L +N L+         L +L++L L  N
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 54  FKSLEHLGMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP 109
           F  L  L      + LN N LQ +       + +L+ L ++ + L      + D+     
Sbjct: 57  FHRLTKL----RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ----L 108

Query: 110 VHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           V+L EL +  N L+ SLP     +LT L  L +  N+L  S+       LTS+++L L N
Sbjct: 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNEL 196
           N  +    +    F+  + LKT   DNN+L
Sbjct: 167 NQLK---RVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 26/176 (14%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPH--FKSLE 58
           H  T L  L L+ + L     Q++ A IF  LKNL   +   N +   Q  P   F  L 
Sbjct: 58  HRLTKLRLLYLNDNKL-----QTLPAGIFKELKNLETLWVTDNKL---QALPIGVFDQLV 109

Query: 59  HLGMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQE 114
           +L      + L+ N L+ +      S+  L YLSL Y+ L +    + D+       L+E
Sbjct: 110 NL----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----LTSLKE 161

Query: 115 LYIGSNDLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           L + +N L+  +P      LT L+ L + +NQL   +       L  ++ L L  N
Sbjct: 162 LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 29/164 (17%)

Query: 261 TKLRQLSLVNDSL----GGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LY 313
           TKLR L L ++ L     G F       K L  L +++N  +  +PI + D L +   L 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ- 372
           L  N + +L   +  SL     L  L L  N L   +P+ +     +L+ L L NN L+ 
Sbjct: 116 LDRNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 373 ------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
                       + L L+NN L         +L  L+ + +  N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 63/229 (27%)

Query: 420 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGL 477
            + LD+  N +S      FH L+             +L+   L+ N+L  ++P  +   L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLT-------------KLRLLYLNDNKLQ-TLPAGIFKEL 84

Query: 478 SQLSHLILGHNNLE---GEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLYE 529
             L  L +  N L+     V  QL     L  L L  N L   +PP  FD+    T L  
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQL---VNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSL 140

Query: 530 SYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589
            Y+   SL            P+G        +F+              L+ L  L L  N
Sbjct: 141 GYNELQSL------------PKG--------VFD-------------KLTSLKELRLYNN 167

Query: 590 KLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           +L   +P      LT ++TL L +N L  +    F +L+ ++ L L  N
Sbjct: 168 QLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 27/199 (13%)

Query: 4   FTNLEYLTLHGSSLHISLLQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPH--FKSLEHL 60
             + + L L  + L      S+ +  F  L  L + Y   N +   Q  P   FK L++L
Sbjct: 36  PADTKKLDLQSNKL-----SSLPSKAFHRLTKLRLLYLNDNKL---QTLPAGIFKELKNL 87

Query: 61  GMMSTRIALNTNFLQVIS----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
                 + +  N LQ +     + + +L  L L  + L +   R+ D  L     L  L 
Sbjct: 88  ----ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SL---TKLTYLS 139

Query: 117 IGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPI 175
           +G N+L+ SLP      LTSL+ L + +NQL   +       LT ++ L L NN  +  +
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RV 196

Query: 176 SLEPLFNHSRLKTFYADNN 194
                 +  +LK      N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 39/214 (18%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P   ++L + SN L          LT LR+L ++ N+L  ++ +     L ++E L++++
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGV 226
           N  Q   +L   +F+    L     D N+L                    SL     D +
Sbjct: 95  NKLQ---ALPIGVFDQLVNLAELRLDRNQLK-------------------SLPPRVFDSL 132

Query: 227 TFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR 286
           T   +L     L   EL  +      P  + +  T L++L L N+ L             
Sbjct: 133 TKLTYLS----LGYNELQSL------PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182

Query: 287 LGMLDISNNNFRGHIPIEIGDVLPSL---YLFNN 317
           L  L + NN  +  +P    D L  L    L  N
Sbjct: 183 LKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L+ L  L L+ NKL   +P  I   L  ++TL ++ N L  L    F  L ++  L L  
Sbjct: 60  LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 637 NKLNGKIP----HQLVELKTL 653
           N+L   +P      L +L  L
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYL 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 584 LDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN-- 640
           LDL  NK +  +P +    LT+++ L L+ N L  L    F  LK++E+L +++NKL   
Sbjct: 42  LDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 641 -GKIPHQLVELKTL 653
              +  QLV L  L
Sbjct: 101 PIGVFDQLVNLAEL 114

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 11/97 (11%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L  L+ L L  N+L   +PP++  +LT++  L+L +N+L  L    F  L  ++ L L N
Sbjct: 108 LVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166

Query: 637 NKLNGKIP----HQLVELKTLEVFSVAYNNLSGEIPE 669
           N+L  ++P     +L ELKTL++     NN    +PE
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.7 bits (173), Expect = 9e-13
 Identities = 57/416 (13%), Positives = 118/416 (28%), Gaps = 54/416 (12%)

Query: 1   LHNFTNLEYLTLHGSS--------------LHISLLQSIASIFPSLKNLSISYCEV-NGV 45
              F NL  L L G                     +  I++    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 46  VHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG 105
           +          LE L +        T+ L  I      +K L +  S+      + L   
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 106 LCSPVHLQELYIGSNDLRG-------SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHL 158
                 L+ L     +          ++     +L S+++ D    +L G   ++  +  
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247

Query: 159 TSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSL 218
                L       +  ++L       RL   Y   NE+      +  +        +L L
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR-------KLDL 300

Query: 219 SSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSL---VNDSLGG 275
                +       +    +LE +E  ++  +      L +   +L++L +    ++    
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGME 359

Query: 276 PFRLPIHSH---------KRLGMLDISNNNFRGHIPIEIGDVLPSL---------YLFNN 317
                +            + L  + +  ++        IG  L +L              
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 318 SMNALDGSIPSSLGNMKFLQILDLSNN--HLTGEIPEHLAVGCVNLQSLALSNNNL 371
           +   LD  + S L   K L+          LT     ++     N++ + L     
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 64/401 (15%), Positives = 108/401 (26%), Gaps = 43/401 (10%)

Query: 3   NFTNLEYLTLHG-SSLHISLLQSIASIFPSLKNLSISYCEVN---GVVHGQGFPHFKSLE 58
              +LE L L   S      L SI +    +K L +     +   G    +   H  SLE
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 59  HLGMMSTRIA-LNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPV-HLQELY 116
            L    T  A ++   L+ I+ +  SL  + +       +   +   G      +L+E  
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVG------DFEILELVGFFKAAANLEEFC 249

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSS-NQLTGSISSSPLIHLTSIEKLYLSNNHFQIPI 175
            GS +    +P    NL   R L     + +  +           I KL L     +   
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309

Query: 176 SLEPLFNHSRLKTFYADNNELNAEITQS--HSLTAPNFQLSRLSLSSGYEDG-------- 225
               +     L+       E    I       L     QL RL +  G ++         
Sbjct: 310 HCTLIQKCPNLEVL-----ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 226 ---VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVN---------DSL 273
                         +LE + +    +  E    +      L    LV            L
Sbjct: 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 274 GGPFRLPIHSHKRLGMLDISNN--NFRGHIPIEIGDVLPSLYLFNNSMNAL-DGSIPSSL 330
               R  +   K+L                   IG   P++           D  +    
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 331 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL 371
                LQ L++     +            +L+ L +     
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 73/536 (13%), Positives = 148/536 (27%), Gaps = 82/536 (15%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMS 64
            +     +  +  + +    ++  FP+L++L +              P       +    
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK-----------PRAAMFNLIP--E 94

Query: 65  TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG 124
                 T ++  IS ++  LK +      +       L +       L+ L +       
Sbjct: 95  NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCSGFT 152

Query: 125 --SLPWCMTNLTSLRILDVSSN---QLTGSISSSPLIHLTSIEKLYLSNNHFQI--PISL 177
              L   +T+   ++ L +  +   +  G        H TS+E L      F    P  L
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 178 EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHD 237
           E +  + R                           L  + +     + +    F     +
Sbjct: 213 ETIARNCR--------------------------SLVSVKVG--DFEILELVGFFKAAAN 244

Query: 238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSH--KRLGMLDISNN 295
           LE      +  +   P     N    R+L  +  S  GP  +PI      ++  LD+   
Sbjct: 245 LEEFCGGSLNEDIGMPE-KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 296 NFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIP---- 351
                    +    P+L +        D  +       K L+ L +        +     
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 352 -------EHLAVGCVNLQSLALSNNNL-QEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN 403
                    LA GC  L+ +A+  +++  E L          I  +L NL   + +    
Sbjct: 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLE--------SIGTYLKNLCDFRLV---- 411

Query: 404 NHLEGPIPVEFCQLD--LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDL 461
             L+    +    LD  +  +L         +       L+   +              L
Sbjct: 412 -LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 462 SYNRL-NGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-LNQLQLLDLSNNNLH 515
            Y    +  + ++  G   L  L +         +      L  L+ L +      
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 11/120 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISL--LQSIASIFPSLKNLSISYCEV--NGVVH-GQGFPHFK 55
           L     L     +     ++   L  I    P+++ + + Y      G++   +G P   
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP--- 488

Query: 56  SLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQEL 115
           +L+ L M       +   +      +PSL+YL +           ++        +++ +
Sbjct: 489 NLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW-NIELI 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 46/308 (14%), Positives = 104/308 (33%), Gaps = 18/308 (5%)

Query: 358 CVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQL 417
           C+++          + G  L     +     W       +   +    L      +    
Sbjct: 256 CLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQ 315

Query: 418 DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL 477
              +++    ++    +     P    +   +   L    + +LS  +    +   ++  
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL---FRCELSVEKST-VLQSELESC 371

Query: 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSL 537
            +L  L   +      +++ +  L+ L     +              +TL       ++ 
Sbjct: 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAVDPMRAAY 421

Query: 538 DEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPP 597
            +     F +E+    +E     +     K++  +   + L L++ LDLS N+L   +PP
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPP 480

Query: 598 QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVF 656
            +  L  ++ L  S N L  +     +NL  ++ L L NN+L        LV    L + 
Sbjct: 481 ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 657 SVAYNNLS 664
           ++  N+L 
Sbjct: 539 NLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 36/199 (18%), Positives = 61/199 (30%), Gaps = 33/199 (16%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQS---IASIFPSLKNLSISYCEVNGVVHGQGFPHFKSL 57
           L        LT+      +  L         F +LK +          +  +       L
Sbjct: 377 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 58  EHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI 117
           +        + L    L      +  L+ L                        +  L +
Sbjct: 437 KMEYADVRVLHLAHKDL----TVLCHLEQLL----------------------LVTHLDL 470

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISL 177
             N LR +LP  +  L  L +L  S N L    +   + +L  +++L L NN  Q   ++
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 178 EPLFNHSRLKTFYADNNEL 196
           +PL +  RL       N L
Sbjct: 527 QPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 40/284 (14%), Positives = 80/284 (28%), Gaps = 28/284 (9%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
               +      L       +T  + +  L +  ++   S+             ++L +  
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRL-SLSSGYEDGVTFP 229
                   P      + T      E      +       +    +L       E      
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 230 KFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGM 289
             L    +L+ +E  +          ++     L  L    ++L     L      R   
Sbjct: 366 SELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 290 LDISNNNFRGHIPIEIGDVLPS--LYLFNNSMNALDG------------------SIPSS 329
           LD   + F     +   +      L+L +  +  L                    ++P +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA 481

Query: 330 LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373
           L  ++ L++L  S+N L   +   +A     LQ L L NN LQ+
Sbjct: 482 LAALRCLEVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQ 522

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 37/197 (18%)

Query: 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL 396
            IL  S   L   +P+ L         L LS+NNL     L               LT L
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSR---LRAEWT-------PTRLTNL 66

Query: 397 QYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPS-CFHPLSIKQVHLSKNMLH 454
             +++ +NHL   I  E F  +  L+ LD+S N++  +L    F  L             
Sbjct: 67  HSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQ------------ 112

Query: 455 GQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDL 509
             L+   L  N +   +     + ++QL  L L  N +     E++    +L +L LLDL
Sbjct: 113 -ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 510 SNNNLHGPIPPCFDNTT 526
           S+N L            
Sbjct: 171 SSNKLKKLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 36/199 (18%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
           ++P SL +  +  +LDLS+N+L+    E       NL SL LS+N+L    ++++ +   
Sbjct: 32  NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVP 86

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSI 443
                   +  L+Y+ + +NHL   +    F  L  L++L + +N+I     + F  ++ 
Sbjct: 87  --------VPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA- 136

Query: 444 KQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV----DGLSQLSHLILGHNNLEGEVLVQL 498
                       QL++  LS N+++   P  +    + L +L  L L  N L+   L  L
Sbjct: 137 ------------QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 499 CELNQLQL--LDLSNNNLH 515
            +L       L L NN L 
Sbjct: 184 QKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 23/183 (12%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVIS-- 78
           L ++  S+      L +S+  ++ +          +L  L        L+ N L  IS  
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSL-------LLSHNHLNFISSE 82

Query: 79  --ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCM-TNLTS 135
               +P+L+YL LS + L T    +    L     L+ L + +N +   +      ++  
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFS-DL---QALEVLLLYNNHIV-VVDRNAFEDMAQ 137

Query: 136 LRILDVSSNQLTGSISS---SPLIHLTSIEKLYLSNNHFQ-IPISLEPLFNHSRLKTFYA 191
           L+ L +S NQ++             L  +  L LS+N  + +P++             Y 
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 192 DNN 194
            NN
Sbjct: 197 HNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           +  L  LDLS N L   +   +  +L  ++ L L +N ++ +  + F ++  ++ L LS 
Sbjct: 87  VPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 637 NKLNGKIPHQ----LVELKTLEVFSVAYNNLS 664
           N+++ + P +      +L  L +  ++ N L 
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 53/196 (27%)

Query: 460 DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDLSNNNLH 515
           DLS+N L+    +W    L+ L  L+L HN+L     E  V +     L+ LDLS+N+LH
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLH 101

Query: 516 GPIPP-CFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV 570
             +    F +      L    ++   +D                       FE   +   
Sbjct: 102 T-LDEFLFSDLQALEVLLLYNNHIVVVDR--------------------NAFEDMAQ--- 137

Query: 571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQI----GNLTRIQTLNLSHNDLIGLIPSTFSNL 626
                     L  L LS N++    P ++      L ++  L+LS N L  L  +    L
Sbjct: 138 ----------LQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 627 K--HVESLDLSNNKLN 640
                  L L NN L 
Sbjct: 187 PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 46/213 (21%), Positives = 70/213 (32%), Gaps = 48/213 (22%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPI 518
             S  +L  ++P  +   S  + L L HNNL           L  L  L LS+N+L+  I
Sbjct: 24  SCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-I 79

Query: 519 PPC-FDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY 573
               F        L  S ++  +LDE                     +F           
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDE--------------------FLFSDLQA------ 113

Query: 574 QGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSN---LKHV 629
                  L  L L  N  I  +      ++ ++Q L LS N +         +   L  +
Sbjct: 114 -------LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 630 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 662
             LDLS+NKL       L +L       +  +N
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 584 LDLSCNKLIGPIPPQI--GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641
           LDLS N  +  +  +     LT + +L LSHN L  +    F  + ++  LDLS+N L+ 
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 642 KIPHQLVELKTLEVFSVAYNNLS 664
                  +L+ LEV  +  N++ 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 42/193 (21%), Positives = 69/193 (35%), Gaps = 49/193 (25%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
               TNL  L L  + L+                           +  + F    +L +L
Sbjct: 60  PTRLTNLHSLLLSHNHLN--------------------------FISSEAFVPVPNLRYL 93

Query: 61  GMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
                   L++N L  + E     + +L+ L L  + +        +  +     LQ+LY
Sbjct: 94  D-------LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DM---AQLQKLY 142

Query: 117 IGSNDLRGSLPW----CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK--LYLSNNH 170
           +  N +    P         L  L +LD+SSN+L   +  + L  L +  K  LYL NN 
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 171 FQIPISLEPLFNH 183
            +    L  LF+H
Sbjct: 201 LECDCKLYQLFSH 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 31/199 (15%)

Query: 1   LHNFTNLEYLTLHGSSL-HISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
             +   +  L+  G+ +  I  +Q       +L  L +   ++  +       +   +  
Sbjct: 37  QADLDGITTLSAFGTGVTTIEGVQY----LNNLIGLELKDNQITDL---APLKNLTKITE 89

Query: 60  LGMMSTRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI 117
           L        L+ N L+ +S    + S+K L L+ + +   +       L    +LQ LY+
Sbjct: 90  LE-------LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYL 136

Query: 118 GSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISL 177
             N +    P  +  LT+L+ L + + Q++     +PL +L+ +  L   +N       +
Sbjct: 137 DLNQITNISP--LAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKIS---DI 188

Query: 178 EPLFNHSRLKTFYADNNEL 196
            PL +   L   +  NN++
Sbjct: 189 SPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 49/289 (16%), Positives = 109/289 (37%), Gaps = 31/289 (10%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
           +  ++  G +++  ++     +L  +  L      +T   +   + +L ++  L L +N 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQ 74

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                 L PL N +++       N L   ++    L      +  L L+S     +T   
Sbjct: 75  IT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTLDLTST---QITDVT 123

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
            L    +L+ + L   ++    P   L   T L+ LS+ N  +      P+ +  +L  L
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL 178

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
              +N      P+     L  ++L NN ++ +     S L N   L I+ L+N  +T + 
Sbjct: 179 KADDNKISDISPLASLPNLIEVHLKNNQISDV-----SPLANTSNLFIVTLTNQTITNQP 233

Query: 351 PEHLAVGCV-----NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT 394
             +     V           ++   + +     + +L+  +  ++ N++
Sbjct: 234 VFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 44/260 (16%), Positives = 88/260 (33%), Gaps = 41/260 (15%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           +    +N    +     D + +L  F   +  ++G     +  +  L  L+L +N +T +
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQIT-D 77

Query: 350 IPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPRWLGNLTWLQY 398
           +          +  L LS N L+           + L L +  ++   P  L  L+ LQ 
Sbjct: 78  LAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 458
           + +  N +    P     L  LQ L I +  +S  L    +   +  +    N +     
Sbjct: 134 LYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKI----- 185

Query: 459 RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI 518
            D+S           +  L  L  + L +N +    +  L   + L ++ L+N  +    
Sbjct: 186 SDISP----------LASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQP 233

Query: 519 PPCFDNTTLYESYSNSSSLD 538
               +N  +       S   
Sbjct: 234 VFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 41/312 (13%), Positives = 99/312 (31%), Gaps = 71/312 (22%)

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387
                +     +    +++T  + +        + +L+     +         ++ G   
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV--------TTIEG--- 58

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH 447
             +  L  L  + + +N +    P++   L  +  L++S N +  ++ +     SIK + 
Sbjct: 59  --VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLD 113

Query: 448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLL 507
           L+   +               +    + GLS L  L L  N +    +  L  L  LQ L
Sbjct: 114 LTSTQI---------------TDVTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYL 156

Query: 508 DLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTK 567
            + N  +   + P  + + L    ++ +                     +I +I    + 
Sbjct: 157 SIGNAQVSD-LTPLANLSKLTTLKADDN---------------------KISDISPLAS- 193

Query: 568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK 627
                     L  L  + L  N++    P  + N + +  + L++  +        +NL 
Sbjct: 194 ----------LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

Query: 628 HVESLDLSNNKL 639
               +   +   
Sbjct: 242 VPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 55/286 (19%)

Query: 377 LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436
               +++   P     L     I    +++   +      LD +  L      ++ ++  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 437 CFHPLSIKQVHLSKNMLH-----GQLKR----DLSYNRLNGSIPDWVDGLSQLSHLILGH 487
             +  ++  + L  N +        L +    +LS N L  ++   + GL  +  L L  
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTS 116

Query: 488 NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI 547
             +    +  L  L+ LQ+L L  N +               + S  + L     +    
Sbjct: 117 TQITD--VTPLAGLSNLQVLYLDLNQI--------------TNISPLAGLTNLQYLSIG- 159

Query: 548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQT 607
                    Q+ ++                LS L+ L    NK+   I P + +L  +  
Sbjct: 160 ----NA---QVSDLTPLAN-----------LSKLTTLKADDNKISD-ISP-LASLPNLIE 199

Query: 608 LNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653
           ++L +N +  + P   +N  ++  + L+N  +  +       L   
Sbjct: 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 41/190 (21%)

Query: 475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNS 534
             L+    +  G +N+     V   +L+ +  L      +   I        L       
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKD 72

Query: 535 SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP 594
           +                     QI ++                L+ ++ L+LS N L   
Sbjct: 73  N---------------------QITDLAPLKN-----------LTKITELELSGNPLKNV 100

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
               I  L  I+TL+L+   +  + P   + L +++ L L  N++    P  L  L  L+
Sbjct: 101 SA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQ 154

Query: 655 VFSVAYNNLS 664
             S+    +S
Sbjct: 155 YLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 26/182 (14%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +    +++ L L  +   I+ +  +A    +L+ L +     N + +        +L++L
Sbjct: 103 IAGLQSIKTLDLTST--QITDVTPLAG-LSNLQVLYLDL---NQITNISPLAGLTNLQYL 156

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            + + +++  T        ++  L  L    + +   S       L S  +L E+++ +N
Sbjct: 157 SIGNAQVSDLTPL-----ANLSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNN 205

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            +    P  + N ++L I+ +++      I++ P+ +  ++    +       PI+   +
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQT----ITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

Query: 181 FN 182
            +
Sbjct: 260 SD 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 26/211 (12%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
            +   +++ +    ++  I  +Q I    P++  L ++    N +   +   + K+L  L
Sbjct: 42  QNELNSIDQIIA--NNSDIKSVQGIQY-LPNVTKLFLNG---NKLTDIKPLANLKNLGWL 95

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            +   ++   ++      + +  LK LSL +     N    ++ GL     L+ LY+G+N
Sbjct: 96  FLDENKVKDLSSL-----KDLKKLKSLSLEH-----NGISDIN-GLVHLPQLESLYLGNN 144

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            +       ++ LT L  L +  NQ++      PL  LT ++ LYLS NH      L  L
Sbjct: 145 KITDITV--LSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS---DLRAL 196

Query: 181 FNHSRLKTFYADNNEL-NAEITQSHSLTAPN 210
                L      + E  N  I    +L  PN
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 46/236 (19%), Positives = 89/236 (37%), Gaps = 43/236 (18%)

Query: 280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQIL 339
              +       ++   +    +     + +  +   N+ + ++ G     +  +  +  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 73

Query: 340 DLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYI 399
            L+ N LT +I + LA    NL  L L  N +          LS      L +L  L+ +
Sbjct: 74  FLNGNKLT-DI-KPLA-NLKNLGWLFLDENKV--------KDLSS-----LKDLKKLKSL 117

Query: 400 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 459
            + +N +     +    L  L+ L + +N I+         LS     L+K      L  
Sbjct: 118 SLEHNGISDINGLV--HLPQLESLYLGNNKIT-----DITVLS----RLTK------LDT 160

Query: 460 -DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
             L  N+++  I   + GL++L +L L  N++    L  L  L  L +L+L +   
Sbjct: 161 LSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 41/249 (16%), Positives = 95/249 (38%), Gaps = 25/249 (10%)

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
                   ++    +T    +     L SI+++  +N+  +   S++ +     +   + 
Sbjct: 22  AFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFL 75

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
           + N+L  +I    +L      L  L L     + V     L     L+++ L H  ++  
Sbjct: 76  NGNKLT-DIKPLANLK----NLGWLFLDE---NKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311
                L +  +L  L L N+ +       +    +L  L + +N     +P+     L +
Sbjct: 128 NG---LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182

Query: 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL 371
           LYL  N ++ L      +L  +K L +L+L +     +   H +   V   ++  ++ +L
Sbjct: 183 LYLSKNHISDL-----RALAGLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKNTDGSL 236

Query: 372 QEGLYLNNN 380
                ++++
Sbjct: 237 VTPEIISDD 245

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 53/316 (16%), Positives = 97/316 (30%), Gaps = 73/316 (23%)

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387
            S          +L    +T  + ++      ++  +  +N++++        S+ G   
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--------SVQG--- 63

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH 447
             +  L  +  + +  N L    P     L  L  L + +N +          L      
Sbjct: 64  --IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-----DLSSLK----D 110

Query: 448 LSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQL 506
           L K      LK   L +N ++  I   +  L QL  L LG+N +    +  L  L +L  
Sbjct: 111 LKK------LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDT 160

Query: 507 LDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT 566
           L L +N +   I P    T L   Y +                   N    I ++     
Sbjct: 161 LSLEDNQISD-IVPLAGLTKLQNLYLS------------------KN---HISDLRALAG 198

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL 626
                      L  L  L+L   + +        NL    T+  +   L+   P   S+ 
Sbjct: 199 -----------LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDD 245

Query: 627 KHVESLDLSNNKLNGK 642
              E  ++  +     
Sbjct: 246 GDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 55/299 (18%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
                  +                  +    +   +     +L+ +  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 435 PSCFHPLSIKQVHLSKNMLH-----GQLKR----DLSYNRLNGSIPDWVDGLSQLSHLIL 485
               +  ++ ++ L+ N L        LK      L  N++   +   +  L +L  L L
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSL 119

Query: 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF 545
            HN +    +  L  L QL+ L L NN +                 +  S L +   +  
Sbjct: 120 EHNGIS--DINGLVHLPQLESLYLGNNKI--------------TDITVLSRLTKLDTLSL 163

Query: 546 SIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRI 605
                  N   QI +I                L+ L  L LS N  I  +   +  L  +
Sbjct: 164 E-----DN---QISDIVPLAG-----------LTKLQNLYLSKNH-ISDLRA-LAGLKNL 202

Query: 606 QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
             L L   + +    +  SNL    ++  ++  L    P  + +    E  +V ++   
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 23/175 (13%)

Query: 280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQIL 339
            I     +  L ++ N      P+     L  L+L  N +  L       L ++K L+ L
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSL 117

Query: 340 DLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGKIPR 388
            L +N ++ +I   L      L+SL L NN +            + L L +N +S  +P 
Sbjct: 118 SLEHNGIS-DI-NGLV-HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP- 173

Query: 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI 443
            L  LT LQ + +  NH+     +    L  L +L++          +    L +
Sbjct: 174 -LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 59/290 (20%)

Query: 153 SPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ 212
                     K  L                 + +    A+N+                  
Sbjct: 18  FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-----------------D 57

Query: 213 LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDS 272
           +  +               + +  ++  + L+  K+    P   L N   L  L L  + 
Sbjct: 58  IKSVQ-------------GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENK 101

Query: 273 LGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN 332
           +       +   K+L  L + +N       +     L SLYL NN +  +     + L  
Sbjct: 102 VKDLS--SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSR 154

Query: 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNS 381
           +  L  L L +N ++ +I      G   LQ+L LS N++            + L L +  
Sbjct: 155 LTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211

Query: 382 LSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
              K      NL     +   +  L  P  +        +  ++  +   
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPE 259

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 49/349 (14%), Positives = 108/349 (30%), Gaps = 50/349 (14%)

Query: 74  LQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPV-HLQELYIGSNDLRGS-----LP 127
           ++  +     +  L LS + L + S+  L +   +    +  L +  N L        + 
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 128 WCMTNLTSLRILDVSSNQLTG----SISSSPLIHLTSIEKLYLSNNHFQ----IPISLEP 179
                  ++  L++S N L+      +  +      +I  L L  N F            
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 180 LFNHSRLKTFYADNNELNAEITQ--SHSLTAPNFQLSRLSLSS---GYEDGVTFPKFLYH 234
               + + +     N+L  + +      L A    ++ L+L       ++     KFL  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 235 QHD-LETVELSHIKMNGEFPTWLLE----NNTKLRQLSLVNDSLGGP----FRLPIHSHK 285
               + +++LS   +  +    L          +  L+L  + L GP     +L   S K
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
            L  + +  +  +      +                   ++ ++  N++ + ++D +   
Sbjct: 254 HLQTVYLDYDIVK-----NMSKEQCK-------------ALGAAFPNIQKIILVDKNGKE 295

Query: 346 LTGE----IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL 390
           +       I   +          +L N  L        N     IP  L
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 47/309 (15%), Positives = 99/309 (32%), Gaps = 77/309 (24%)

Query: 256 LLENNTKLRQLSLVNDSLGGP-----FRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP 310
                  +  L L  ++L         +   ++   +  L++S N+       E+  +L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 311 S-------LYLFNNSMNALDG-SIPSSLGNMKF-LQILDLSNNHLTGEIPEHLAVGCVNL 361
           +       L L  N ++      +  +L  + F + +LDL  N  + +            
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK------ 130

Query: 362 QSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQ 421
           Q+ +    ++   L L  N L  K    L      Q +     ++               
Sbjct: 131 QAFSNLPASITS-LNLRGNDLGIKSSDELI-----QILAAIPANV--------------N 170

Query: 422 ILDISDNNI--------SGSLPSCFHPLSIKQVHLSKNML---------------HGQLK 458
            L++  NN+        +  L S   P S+  + LS N+L                  + 
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASI--PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 459 R-DLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEG-------EVLVQLCELNQLQL 506
             +L  N L+G     +    D L  L  + L ++ ++         +      + ++ L
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 507 LDLSNNNLH 515
           +D +   +H
Sbjct: 289 VDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 55/360 (15%), Positives = 100/360 (27%), Gaps = 106/360 (29%)

Query: 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG 391
               +  L+LS N L  +  + L       Q LA    N+   L L+ N LS K    L 
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELV------QILAAIPANVTS-LNLSGNFLSYKSSDELV 101

Query: 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI--------SGSLPSCFHPLSI 443
                  +      +               +LD+  N+           +  +   P SI
Sbjct: 102 KT-----LAAIPFTIT--------------VLDLGWNDFSSKSSSEFKQAFSNL--PASI 140

Query: 444 KQVHLSKNML---------------HGQLKR-DLSYNRL-NGSIPDWVDGL----SQLSH 482
             ++L  N L                  +   +L  N L + +  +    L    + ++ 
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 483 LILGHNNLEGEVLVQLCEL-----NQLQLLDLSNNNLHGP--------IPPCFDNTTLYE 529
           L L  N L  +   +L  +     N +  L+L  N LHGP                T+Y 
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 530 SYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589
            Y    ++ +                +Q   +                   +  +D +  
Sbjct: 261 DYDIVKNMSK----------------EQCKALGAAFPNI----------QKIILVDKNGK 294

Query: 590 KLIGPIPPQIGNL-----TRIQTLNLSHNDLI-----GLIPSTFSNLKHVESLDLSNNKL 639
           ++       I NL      +    +L +  LI            +    +     +   L
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 34/195 (17%)

Query: 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNN 380
             K      L  +         +     +L  + L+N N+            + L +NN 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMN----SLTYITLANINVTDLTGIEYAHNIKDLTINNI 76

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP 440
             +   P  +  L+ L+ + +    +          L  L +LDIS +    S+ +  + 
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 441 LSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLC 499
           L              ++   DLSYN     I   +  L +L  L +  + +       + 
Sbjct: 135 LP-------------KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIE 178

Query: 500 ELNQLQLLDLSNNNL 514
           +  +L  L   +  +
Sbjct: 179 DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 74/232 (31%)

Query: 411 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGS 469
            +   Q++ L  + +++ N++           +  +  + N     +K   ++       
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLTGIEYAHN-----IKDLTINNIHATNY 81

Query: 470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYE 529
            P  + GLS L  L +   ++  + +  L  L  L LLD+S++     I    +      
Sbjct: 82  NP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT----- 134

Query: 530 SYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589
                                                           L  ++ +DLS N
Sbjct: 135 ------------------------------------------------LPKVNSIDLSYN 146

Query: 590 KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641
             I  I P +  L  +++LN+  + +         +   +  L   +  + G
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 285 KRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
             +  L I+N +   + PI     L  L +       +      +L  +  L +LD+S++
Sbjct: 66  HNIKDLTINNIHATNYNPISGLSNLERLRIMGKD---VTSDKIPNLSGLTSLTLLDISHS 122

Query: 345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
                I   +      + S+ LS N            +       L  L  L+ + +  +
Sbjct: 123 AHDDSILTKIN-TLPKVNSIDLSYNG-------AITDIMP-----LKTLPELKSLNIQFD 169

Query: 405 HLEGPIPVEFCQLDLLQILDISDNNISG 432
            +     +E      L  L      I G
Sbjct: 170 GVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           L+ L+ LD+S +     I  +I  L ++ +++LS+N  I  I      L  ++SL++  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGE 666
            ++      + +   L         + G+
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 65  TRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDL 122
           T I L    +  ++  E   ++K L+++       +       +    +L+ L I   D+
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDV 100

Query: 123 RGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFN 182
                  ++ LTSL +LD+S +        + +  L  +  + LS N   I   + PL  
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNG-AIT-DIMPLKT 157

Query: 183 HSRLKTFYADNNELN 197
              LK+     + ++
Sbjct: 158 LPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
              +  L ++        P  I  L+ ++ L +   D+        S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEI 667
             +  I  ++  L  +    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 39/198 (19%)

Query: 467 NGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 526
           N +IPD         + +LG ++      +   ++N L  + L+N N+            
Sbjct: 14  NVNIPD--STFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINV------------ 56

Query: 527 LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDL 586
                +         ++  +                  +            LS L  L +
Sbjct: 57  --TDLTGIEYAHNIKDLTIN-----NI---HATNYNPISG-----------LSNLERLRI 95

Query: 587 SCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ 646
               +     P +  LT +  L++SH+     I +  + L  V S+DLS N     I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP- 154

Query: 647 LVELKTLEVFSVAYNNLS 664
           L  L  L+  ++ ++ + 
Sbjct: 155 LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316
           +   + L +L ++   +       +     L +LDIS++     I  +I   LP +   +
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSID 142

Query: 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIP-EHLAVGCVNLQSLALSNNNL 371
            S N     I   L  +  L+ L++  + +      E        L  L   +  +
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           ++ L+ + L+    +  +   I     I+ L +++        +  S L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 669
            +       L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 27/168 (16%), Positives = 64/168 (38%), Gaps = 16/168 (9%)

Query: 130 MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189
              + SL  + +++  +T     + + +  +I+ L ++N H     +  P+   S L+  
Sbjct: 40  EAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERL 93

Query: 190 YADNNEL-NAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKM 248
                ++ + +I     LT     L+ L +S    D     K +     + +++LS+   
Sbjct: 94  RIMGKDVTSDKIPNLSGLT----SLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGA 148

Query: 249 NGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
             +     L+   +L+ L++  D +       I    +L  L   +  
Sbjct: 149 ITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
           +    N++ LT+  +++H +    I+    +L+ L I   +V             SL  L
Sbjct: 62  IEYAHNIKDLTI--NNIHATNYNPISG-LSNLERLRIMGKDVTSD-KIPNLSGLTSLTLL 117

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            +  +    + + L  I+  +P +  + LSY+   T+        L +   L+ L I  +
Sbjct: 118 DISHSAH--DDSILTKINT-LPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFD 169

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTG 148
            +       + +   L  L   S  + G
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 29/212 (13%)

Query: 1   LHNFTNLEYLTLHGSSL-HISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEH 59
                N     L   S+  +   +        ++N +      + +    G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 60  LGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
           L +   +I+  +       + +  L+ LS++ +       R+ +        L  L++ +
Sbjct: 68  LHLSHNQISDLSPL-----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 120 NDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
           N+LR +    + +L +L IL + +N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 180 LFNHSRLKTFYADNNEL-NAEITQSHSLTAPN 210
           L    ++        +  N  +     L   N
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 34/187 (18%), Positives = 70/187 (37%), Gaps = 37/187 (19%)

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387
                +      +L    +T  + +        +Q+    N+N+Q        SL+G   
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--------SLAG--- 58

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH 447
             +   T L+ + + +N +    P++   L  L+ L ++ N +     +      + ++ 
Sbjct: 59  --MQFFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLKN--LNGIPSACLSRLF 112

Query: 448 LSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLL 507
           L  N L                  D +  L  L  L + +N L+   +V L  L++L++L
Sbjct: 113 LDNNEL---------------RDTDSLIHLKNLEILSIRNNKLK--SIVMLGFLSKLEVL 155

Query: 508 DLSNNNL 514
           DL  N +
Sbjct: 156 DLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 32/182 (17%), Positives = 72/182 (39%), Gaps = 23/182 (12%)

Query: 280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQIL 339
           P          ++   +    +  +    + +    N+++ +L G     +     L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKEL 68

Query: 340 DLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ----------EGLYLNNNSLSGKIPRW 389
            LS+N ++ ++   L      L+ L+++ N L+            L+L+NN L       
Sbjct: 69  HLSHNQIS-DL-SPLK-DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS-- 123

Query: 390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 449
           L +L  L+ + + NN L+  + +    L  L++LD+  N I+ +         +  + L+
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLT 180

Query: 450 KN 451
             
Sbjct: 181 GQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 35/185 (18%)

Query: 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316
           ++  T L++L L ++ +      P+    +L  L ++ N  + ++       L  L+L N
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLK-NLNGIPSACLSRLFLDN 115

Query: 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ---- 372
           N +         SL ++K L+IL + NN L   I   L      L+ L L  N +     
Sbjct: 116 NELRDT-----DSLIHLKNLEILSIRNNKLK-SI-VMLG-FLSKLEVLDLHGNEITNTGG 167

Query: 373 -------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDI 425
                    + L       +  ++   L     +  P+                +    I
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG-------------RWISPYYI 214

Query: 426 SDNNI 430
           S+   
Sbjct: 215 SNGGS 219

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 23/228 (10%)

Query: 153 SPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQ 212
            P   L +  K  L          L      S ++ F  DN+ +   +      T     
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 213 LSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDS 272
           L  L LS    + ++    L     LE + ++  ++           +  L +L L N+ 
Sbjct: 65  LKELHLSH---NQISDLSPLKDLTKLEELSVNRNRLKNLNG----IPSACLSRLFLDNNE 117

Query: 273 LGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN 332
           L       +   K L +L I NN  +  + +     L  L L  N +          L  
Sbjct: 118 LRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-----GGLTR 170

Query: 333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNN 380
           +K +  +DL+      E  ++         ++   +       Y++N 
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPE-LYITNTVKDPDGRWISPYYISNG 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/195 (18%), Positives = 70/195 (35%), Gaps = 28/195 (14%)

Query: 474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH--GPIPPCFDNTTLYESY 531
             GL+      LG  ++    LV   EL+ +Q  +  N+N+     +    +   L+ S+
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 532 SNSSSLDEQFEIFFSIE--SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN 589
           +  S L    +    +E  S   N   ++  +    +              LS L L  N
Sbjct: 73  NQISDL-SPLKDLTKLEELSVNRN---RLKNLNGIPSAC------------LSRLFLDNN 116

Query: 590 KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE 649
           +L       + +L  ++ L++ +N L  +       L  +E LDL  N++       L  
Sbjct: 117 ELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--LTR 170

Query: 650 LKTLEVFSVAYNNLS 664
           LK +    +      
Sbjct: 171 LKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 377 LNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 436
                ++   P     L       +    +   +  +  +L  +Q  +  ++NI  SL  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAG 58

Query: 437 CFHPLSIKQVHLSKNMLH-----GQLKR----DLSYNRLNGSIPDWVDGLS--QLSHLIL 485
                ++K++HLS N +        L +     ++ NRL       ++G+    LS L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFL 113

Query: 486 GHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
            +N L       L  L  L++L + NN L
Sbjct: 114 DNNELRD--TDSLIHLKNLEILSIRNNKL 140

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 40/257 (15%), Positives = 81/257 (31%), Gaps = 39/257 (15%)

Query: 1   LHNFTNLEYLTLHG------SSLHISLLQSIASIF---PSLKNLSISYCEV--NGVVH-G 48
           + +  +LE                   L+ +       P L  + +S             
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 49  QGFPHFKSLEHLGMMSTRI----------ALNTNFLQVISESMPSLKYLSLSYSTLGTNS 98
                   LEHL + +  +          AL    +   +++ P L+ +    + L   S
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 99  SRILDRGLCSPVHLQELYIGSNDLR-----GSLPWCMTNLTSLRILDVSSNQLT--GSIS 151
            +   +   S   L  + +  N +R       L   +     L++LD+  N  T  GS +
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 152 -SSPLIHLTSIEKLYLSNNHFQ------IPISLEPLFNHSRLKTFYADNNELNAEITQ-- 202
            +  L    ++ +L L++          +  +   L N   L+T     NE+  +  +  
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTL 294

Query: 203 SHSLTAPNFQLSRLSLS 219
              +      L  L L+
Sbjct: 295 KTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 52/337 (15%), Positives = 106/337 (31%), Gaps = 70/337 (20%)

Query: 83  SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDL--RG--SLPWCMTNLTSLRI 138
           S++  SL    + T   + +   L     ++E+ +  N +       L   + +   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 139 LDVSSNQLTGSISSSP---------LIHLTSIEKLYLSNNHF----QIPISLEPLFNHSR 185
            + S           P         L+    +  + LS+N F    Q P+  + L  H+ 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTP 123

Query: 186 LKTFYADNNELNAE----------ITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ 235
           L+  Y  NN L  +              +        L  +                   
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR--------------- 168

Query: 236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG-----GPFRLPIHSHKRLGML 290
           + LE   +       +      +++  L  + +V + +            +   + L +L
Sbjct: 169 NRLENGSMKEW---AK----TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 291 DISNNNFRGHIPIEIGDVLPS------LYLFNNSMNALDG--SIPSSLGNMKF--LQILD 340
           D+ +N F       +   L S      L L +  ++A  G  ++  +   ++   LQ L 
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLR 280

Query: 341 LSNNHLTGE----IPEHLAVGCVNLQSLALSNNNLQE 373
           L  N +  +    +   +     +L  L L+ N   E
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 53/316 (16%), Positives = 86/316 (27%), Gaps = 64/316 (20%)

Query: 260 NTKLRQLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP----- 310
              +   SL  D++           +     +  + +S N         + + +      
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 311 -SLYLFNNSMNALDGSIP-------SSLGNMKFLQILDLSNNHLTGEIPEHLAVG---CV 359
                 +     +   IP        +L     L  + LS+N       E L        
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 360 NLQSLALSNNNLQE--GLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGP----IPVE 413
            L+ L L NN L    G  +        + +   N   L+ II   N LE          
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 414 FCQLDLLQILDISDNNI---------SGSLPSCFHPLSIKQVHLSKNML----------- 453
           F    LL  + +  N I            L  C     +K + L  N             
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAIA 239

Query: 454 ---HGQLKR-DLSYNRL-NGSIPDWVDGL-----SQLSHLILGHNNLEGEVLVQLCE--- 500
                 L+   L+   L        VD         L  L L +N +E + +  L     
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 501 --LNQLQLLDLSNNNL 514
             +  L  L+L+ N  
Sbjct: 300 EKMPDLLFLELNGNRF 315

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 8/189 (4%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
              ++++ L  S + +S L  I S    L+NLS+    ++  +         +L  L + 
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLS 150

Query: 64  STRIALNTNFLQVISESMPSLKYLSLSY-STLGTNSSRILDRGLCSPVHLQELYIGSNDL 122
                 +   LQ +  S   L  L+LS+         ++    +     + +L +     
Sbjct: 151 GCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLSGYRK 207

Query: 123 R---GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
                 L   +    +L  LD+S + +  +        L  ++ L LS  +  IP +L  
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 180 LFNHSRLKT 188
           L     LKT
Sbjct: 268 LGEIPTLKT 276

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 67/415 (16%), Positives = 127/415 (30%), Gaps = 66/415 (15%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYC-------------------- 40
             ++T LE + L    +    L+ IA  F + K L +S C                    
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 41  ---------EVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSY 91
                    +V+G         + SL  L +      ++ + L+ +    P+LK L L+ 
Sbjct: 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220

Query: 92  STLGTNSSRILDRGLCSPVHLQELYIGS------NDLRGSLPWCMTNLTSLRILDVSSNQ 145
           +      + +L R       L+EL  G        D+   L   ++    LR L    + 
Sbjct: 221 AVPLEKLATLLQR--AP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD- 275

Query: 146 LTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHS 205
              +   +     + +  L LS    Q    ++ L    +L+  +  +   +A +     
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL---EV 332

Query: 206 LTAPNFQLSRLSLSS------GYEDGVT---FPKFLYHQHDLETVELSHIKMNGEFPTWL 256
           L +    L  L +             +T             LE+V     +M       +
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392

Query: 257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316
             N   + +  L       P       +  L  LDI            I +    L   +
Sbjct: 393 ARNRPNMTRFRLCIIEPKAP------DYLTLEPLDIG--------FGAIVEHCKDLRRLS 438

Query: 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL 371
            S    D          K +++L ++    +     H+  GC +L+ L + +   
Sbjct: 439 LSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 50/414 (12%)

Query: 1   LHNFTNLEYLTLHG--------------SSLHISLLQSIASIFPSLKNLSISYCEVNGVV 46
           +  F  +  + L G                     +++++S +  L+ + +    V    
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 47  HGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL 106
                  FK+ + L + S     +T+ L  I+ +  +LK L L  S +   S   L    
Sbjct: 122 LELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180

Query: 107 CSPVHLQELYIGSNDLR---GSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK 163
            +   L  L I          +L   +T   +L+ L ++       +++  L     +E+
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEE 239

Query: 164 LYLSNNHFQIPISL-----EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSL 218
           L       ++   +       L     L+      + + A +    ++ +   +L+ L+L
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP---AVYSVCSRLTTLNL 296

Query: 219 SSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFR 278
           S          K L     L+ + +     +      L      LR+L +          
Sbjct: 297 SYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEPFVMEP 355

Query: 279 LP----------IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN-----------N 317
                            +L  +            I I    P++  F             
Sbjct: 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 318 SMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL 371
           ++  LD    + + + K L+ L LS   LT ++ E++      ++ L+++    
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGD 468

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 63/544 (11%), Positives = 149/544 (27%), Gaps = 119/544 (21%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLG 61
           +         +   + +     ++   FP ++++ +              PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 62  MMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSND 121
                      +++ +S S   L+ + L    +  +   ++ +      + + L      
Sbjct: 87  DGWG--GYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS-FK--NFKVL------ 135

Query: 122 LRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLF 181
               L  C    ++  +  +++                ++++L L  +     +S   L 
Sbjct: 136 ---VLSSC-EGFSTDGLAAIAAT-------------CRNLKELDLRESDV-DDVSGHWL- 176

Query: 182 NHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFP---KFLYHQHDL 238
                                          L  L++S      V+F    + +    +L
Sbjct: 177 ----------------------SHFPDTYTSLVSLNIS-CLASEVSFSALERLVTRCPNL 213

Query: 239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR 298
           ++++L+      +  T LL+   +L +L        G +   +      G+    +    
Sbjct: 214 KSLKLNRAVPLEKLAT-LLQRAPQLEELGT------GGYTAEVRPDVYSGLSVALSG--- 263

Query: 299 GHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGC 358
                        L   +   +A+   +P+       L  L+LS   +       L   C
Sbjct: 264 ----------CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 359 VNLQSLALSNNNLQEGL-----------YLNNNSLSGKIPRWLGNLTW--LQYIIMPNNH 405
             LQ L + +     GL            L        +      LT   L  + M    
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373

Query: 406 LEGPIPVEFCQ-------------LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 452
           LE    + FC+                +    +              PL I    + ++ 
Sbjct: 374 LE--SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH- 430

Query: 453 LHGQLKR-DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-LNQLQLLDLS 510
               L+R  LS    +           ++  L +         +  +    + L+ L++ 
Sbjct: 431 -CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 511 NNNL 514
           +   
Sbjct: 490 DCPF 493

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 65  TRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
           T I L  N ++VI          L+ + LS + +   +      GL     L  L +  N
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GL---RSLNSLVLYGN 90

Query: 121 DLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
            +   LP  +   L SL++L +++N++   +       L ++  L L +N  Q  I+   
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 180 LFNHSRLKTFYADNN 194
                 ++T +   N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)

Query: 300 HIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV 359
            IP  + + +  + L  N++  +    P +    K L+ +DLSNN ++ E+      G  
Sbjct: 25  EIPTNLPETITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLD 418
           +L SL L  N +          L   +   L +L  L    +  N +   + V+ F  L 
Sbjct: 81  SLNSLVLYGNKIT--------ELPKSLFEGLFSLQLLL---LNANKINC-LRVDAFQDLH 128

Query: 419 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 451
            L +L + DN +       F PL +I+ +HL++N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 54  FKSLEHLGMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP 109
           F   + L     RI L+ N +  ++      + SL  L L  + +      + + GL   
Sbjct: 52  FSPYKKL----RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE-GL--- 103

Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
             LQ L + +N +         +L +L +L +  N+L  +I+      L +I+ ++L+ N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

Query: 170 HF 171
            F
Sbjct: 163 PF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           L  L+ L L  NK+   +P  +   L  +Q L L+ N +  L    F +L ++  L L +
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 637 NKLNGKIPH----QLVELKTLEVFS 657
           NKL   I       L  ++T+ +  
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 22/126 (17%)

Query: 421 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLS 478
             + +  N I    P  F P               +L+R DLS N+++  +      GL 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYK-------------KLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLYESYSN 533
            L+ L+L  N +          L  LQLL L+ N ++  +    F +      L    + 
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139

Query: 534 SSSLDE 539
             ++ +
Sbjct: 140 LQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 584 LDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL--- 639
           + L  N  I  IPP       +++ ++LS+N +  L P  F  L+ + SL L  NK+   
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 640 NGKIPHQLVELKTL 653
              +   L  L+ L
Sbjct: 96  PKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P  + E+ +  N ++   P   +    LR +D+S+NQ++  ++      L S+  L L  
Sbjct: 31  PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNEL 196
           N       L   LF     L+    + N++
Sbjct: 90  NKIT---ELPKSLFEGLFSLQLLLLNANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 41/143 (28%)

Query: 501 LNQLQLLDLSNNNLHGPIPP-CFDN----TTLYESYSNSSSLDEQFEIFFSIESPQGNVE 555
             +L+ +DLSNN +   + P  F       +L    +  + L            P+    
Sbjct: 55  YKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITEL------------PKS--- 98

Query: 556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHND 614
                +FE                 L  L L+ NK+   +      +L  +  L+L  N 
Sbjct: 99  -----LFEGLFS-------------LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNK 139

Query: 615 LIGLIPSTFSNLKHVESLDLSNN 637
           L  +   TFS L+ ++++ L+ N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP----HQLVELKTLEVFSV 658
             I  + L  N +  + P  FS  K +  +DLSNN+++ ++       L  L +L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 659 AYNNLS 664
             N ++
Sbjct: 88  YGNKIT 93

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 22  LQSI-ASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISE- 79
           L  I   I      L ++    N     +    FK L  L     +I  + N +  I E 
Sbjct: 23  LNKIPEHIPQYTAELRLNN---NEFTVLEATGIFKKLPQL----RKINFSNNKITDIEEG 75

Query: 80  ---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCM-TNLTS 135
                  +  + L+ + L     ++   GL     L+ L + SN +   +       L+S
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFK-GL---ESLKTLMLRSNRIT-CVGNDSFIGLSS 130

Query: 136 LRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ 172
           +R+L +  NQ+T +++      L S+  L L  N F 
Sbjct: 131 VRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 65  TRIALNTNFLQVISES-----MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
             + LN N   V+  +     +P L+ ++ S + +        + G      + E+ + S
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GA---SGVNEILLTS 90

Query: 120 NDLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISL 177
           N L  ++   M   L SL+ L + SN++T  + +   I L+S+  L L +N    +    
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVA--- 145

Query: 178 EPLFNH-SRLKTFYADNN 194
              F+    L T     N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE-------------GLYLNNNSLS 383
             L L+NN  T      +      L+ +  SNN + +              + L +N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 384 GKIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPL- 441
               +    L  L+ +++ +N +   +  + F  L  +++L + DN I+   P  F  L 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 442 SIKQVHLSKN 451
           S+  ++L  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQI-GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
            S ++ + L+ N+L   +  ++   L  ++TL L  N +  +   +F  L  V  L L +
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 637 NKLNGKIPH----QLVELKTLEVFS 657
           N++   +       L  L TL + +
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 26/141 (18%)

Query: 395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
            L      N          F +L  L+ ++ S+N I+      F   S            
Sbjct: 38  RLNN----NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------ 81

Query: 455 GQLKR-DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
             +    L+ NRL  ++   +  GL  L  L+L  N +          L+ ++LL L +N
Sbjct: 82  -GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 513 NLHGPIPP-CFDN----TTLY 528
            +   + P  FD     +TL 
Sbjct: 140 QIT-TVAPGAFDTLHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 584 LDLSCNKLIGPIPPQIG--NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641
           L L+ N+    +        L +++ +N S+N +  +    F     V  + L++N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 642 KIP----HQLVELKTLEVFSVAYNNLS 664
            +       L  LKTL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQ-IGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
              L+ L +   + +  +  + +  L  ++ L +  + L  + P  F     +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 637 NKLNGKIPHQLVELKTLEVFSVAYNNL 663
           N L   +  + V+  +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 2/96 (2%)

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPS-TFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653
               +     +  L + +   +  +       L  + +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 654 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 689
              ++++N L   +   T Q  +  E    GN   C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 8e-08
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 104 RGLCSPVHLQELYIGSNDLRGSLPW-CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE 162
             L    +L ELYI +      L    +  L  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 163 KLYLSNNHFQIPISLEP-LFNHSRLKTFYADNNELN 197
           +L LS N  +   SL         L+      N L+
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 37/131 (28%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
                L   + L  L + N      +      G   L++L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF----------- 70

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSI 443
                                    +  + F     L  L++S N +          LS+
Sbjct: 71  -------------------------VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL 105

Query: 444 KQVHLSKNMLH 454
           +++ LS N LH
Sbjct: 106 QELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
           L  LY+ N     L       L  +  L+ L +  + L   +          L  L LS 
Sbjct: 33  LTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89

Query: 369 NNLQ------------EGLYLNNNSL 382
           N L+            + L L+ N L
Sbjct: 90  NALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 10/116 (8%)

Query: 107 CSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL 166
           C P     L    +    SL   +    +L  L + + Q    +    L  L  +  L +
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 167 SNNHFQIPISLEP-LFNH-SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS 220
             +  +    + P  F+   RL       N L          T     L  L LS 
Sbjct: 64  VKSGLR---FVAPDAFHFTPRLSRLNLSFNAL----ESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 460 DLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI 518
            +   +    +      GL +L +L +  + L            +L  L+LS N L    
Sbjct: 37  YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96

Query: 519 PPCFDNTTLYESYSNSSSLD 538
                  +L E   + + L 
Sbjct: 97  WKTVQGLSLQELVLSGNPLH 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 83/547 (15%), Positives = 155/547 (28%), Gaps = 169/547 (30%)

Query: 1   LHNFTNLEYLTLHG------SSLHISLLQS--IASIFPSLKN---LSISYCEVNGVVHGQ 49
           L      + + + G      + + + +  S  +            L++  C     V   
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNSPETV--- 198

Query: 50  GFPHFKSLEHLGMMSTRIALNTNFLQVISESMP----SLK-YLS-LSYSTLGTNSSRILD 103
                  LE L  +  +I  N       S ++     S++  L  L  S    N   +L 
Sbjct: 199 -------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 104 RGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLR---ILDVSSNQLTGSISSSPLIH-LT 159
             + +            +L      C   LT+ R   + D  S   T  IS       LT
Sbjct: 252 -NVQNAKAWNAF-----NLS-----CKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 160 SIEKL-----YLSNNHFQIP---ISLEPLF----------NHSRLKTF-YADNNELNAEI 200
             E       YL      +P   ++  P              +    + + + ++L   I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 201 TQS-HSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLE- 258
             S + L    ++         ++    FP              +HI      PT LL  
Sbjct: 360 ESSLNVLEPAEYR-------KMFDRLSVFPP------S------AHI------PTILLSL 394

Query: 259 --NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316
              +     + +V + L          HK   +++         IP     +   L +  
Sbjct: 395 IWFDVIKSDVMVVVNKL----------HKY-SLVEKQPKESTISIP----SIYLELKVKL 439

Query: 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLY 376
            +  AL  SI       K     DL   +L      H+                     +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--------------------H 479

Query: 377 -LNNNSLSGKI---PRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
            L N     ++        +  +L+  I                       D +  N SG
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKI---------------------RHDSTAWNASG 518

Query: 433 SLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILG-HNNLE 491
           S+ +    L   + ++  N        D  Y RL  +I D++  + +  +LI   + +  
Sbjct: 519 SILNTLQQLKFYKPYICDN--------DPKYERLVNAILDFLPKIEE--NLICSKYTD-- 566

Query: 492 GEVLVQL 498
              L+++
Sbjct: 567 ---LLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 81/593 (13%), Positives = 187/593 (31%), Gaps = 149/593 (25%)

Query: 100 RILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNL------TSLRILDVSS--NQLTGSIS 151
           R+    L     + + ++    LR +  + M+ +       S+         ++L     
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 152 SSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRL---------KTFYADNNELNAEITQ 202
                +++ ++       + ++  +L  L     +         KT+      +  ++  
Sbjct: 125 VFAKYNVSRLQP------YLKLRQALLELRPAKNVLIDGVLGSGKTW------VALDVCL 172

Query: 203 SHSL-TAPNFQLSRLSLSSGYEDGVTFPKF--LYHQHDLETVELSHIKMNGEFPTWLLEN 259
           S+ +    +F++  L+L +             L +Q D      S    N +     ++ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 260 NTKLRQLSLVNDSLGGPFRLPIHSHKR-LGMLD-ISNNN----FRGHIPI-------EIG 306
             +LR+L            L    ++  L +L  + N      F     I       ++ 
Sbjct: 233 --ELRRL------------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 307 DVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI----PEHLAVGCVNLQ 362
           D L +    + S++    ++         L+ LD     L  E+    P  L++   +++
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 363 SLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT-------WLQYIIMPNNHLEGPIPVEFC 415
               + +N +   ++N + L+  I   L  L        + +  + P +     IP    
Sbjct: 339 DGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIP---- 388

Query: 416 QLDLLQIL--DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD- 472
              LL ++  D+  +++   +                +++  Q K           IP  
Sbjct: 389 -TILLSLIWFDVIKSDVMVVVNKLH----------KYSLVEKQPKESTIS------IPSI 431

Query: 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYS 532
           +++   +L +    H ++          ++   +    +++    IPP  D    Y  YS
Sbjct: 432 YLELKVKLENEYALHRSI----------VDHYNIPKTFDSD--DLIPPYLDQ---Y-FYS 475

Query: 533 ------NSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI-----YQGKVLSLL 581
                  +    E+  +F           + +   F F  + I +        G +L+ L
Sbjct: 476 HIGHHLKNIEHPERMTLF-----------RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 582 SGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
               L        I        R+       N ++  +P    NL   +  DL
Sbjct: 525 --QQL--KFYKPYICDNDPKYERLV------NAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-06
 Identities = 57/361 (15%), Positives = 111/361 (30%), Gaps = 95/361 (26%)

Query: 62  MMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL-CSPVHLQELYIGSN 120
           +++TR    T+FL   + +  SL + S++ +        +L + L C P  L    + +N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 121 DLRGSLPWCMT---NLTSLRILDVSSNQLTGSISSSPLIHLTSIE--KLYLS----NNHF 171
             R S+          T      V+ ++LT  I SS L  L   E  K++          
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSA 385

Query: 172 QIPIS-----------------LEPLFNHS-----------RLKTFYADNNELNAEITQS 203
            IP                   +  L  +S            + + Y +           
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 204 HSLTAPNFQLSRL----SLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLEN 259
           H     ++ + +      L   Y D   +    +H   L+ +E         F    L+ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPE--RMTLFRMVFLDF 500

Query: 260 N---TKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN 316
                K+R  S   ++ G              +  +    ++ +I         +   + 
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNT---------LQQL--KFYKPYI-------CDNDPKYE 542

Query: 317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQSLALSNNNLQEGL 375
             +NA+          + FL            +I E+L      +L  +AL   +  E +
Sbjct: 543 RLVNAI----------LDFLP-----------KIEENLICSKYTDLLRIALMAED--EAI 579

Query: 376 Y 376
           +
Sbjct: 580 F 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 7e-05
 Identities = 79/494 (15%), Positives = 140/494 (28%), Gaps = 156/494 (31%)

Query: 233 YHQH-DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLD 291
           +H H D ET E  +     +  +   +          V D                    
Sbjct: 3   HHHHMDFETGEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSIL-------------- 46

Query: 292 ISNNNFRGHIPIEIGDVLPSLYLF----NNSMNALDGSIPSSLG-NMKFLQILDLSNNHL 346
            S      HI +    V  +L LF    +     +   +   L  N KFL +  +     
Sbjct: 47  -SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQR 103

Query: 347 TGEIPEHLAVGCVNLQSLALSNNN----------------LQEGLY-LNNNSL------- 382
              +   + +   +     L N+N                L++ L  L            
Sbjct: 104 QPSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 383 -SGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL 441
            SGK        TW+               ++ C     ++    D  I          L
Sbjct: 160 GSGK--------TWVA--------------LDVCLSY--KVQCKMDFKI--------FWL 187

Query: 442 SIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL 501
           ++K  +  + +L    K      +++   P+W       S++ L  ++++ E L +L + 
Sbjct: 188 NLKNCNSPETVLEMLQKL---LYQID---PNWTSRSDHSSNIKLRIHSIQAE-LRRLLKS 240

Query: 502 NQLQ--LLDLSNNNLHGPIPPCFDN------TTLYESYSNSSSLDEQFEIFFSIESPQGN 553
              +  LL L N   +      F+       TT ++  ++  S      I          
Sbjct: 241 KPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--------- 290

Query: 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSG-LDLSCNKLIGPIPPQIGNLTRIQTLNLSH 612
                H     T          +V SLL   LD     L    P ++          LS 
Sbjct: 291 ---LDHHSMTLTPD--------EVKSLLLKYLDCRPQDL----PREV---LTTNPRRLS- 331

Query: 613 NDLIGLI----PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEI 667
             +I        +T+ N KHV       +KL               +   + N L   E 
Sbjct: 332 --IIAESIRDGLATWDNWKHVN-----CDKLT-------------TIIESSLNVLEPAEY 371

Query: 668 PEWTAQFATFNESS 681
            +   + + F  S+
Sbjct: 372 RKMFDRLSVFPPSA 385

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 27/198 (13%)

Query: 4   FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMM 63
           F       L   S+      + A     L ++       + +   QG  +  ++ +L   
Sbjct: 18  FAETIKANLKKKSV------TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-- 69

Query: 64  STRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSND 121
                L  N L  IS  + + +L YL L+ + L +  + + D+      +L+EL +  N 
Sbjct: 70  -----LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVLVENQ 120

Query: 122 LRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLEP 179
           L+ SLP      LT+L  L+++ NQL  S+       LT++ +L LS N  Q +P   E 
Sbjct: 121 LQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLP---EG 175

Query: 180 LFNH-SRLKTFYADNNEL 196
           +F+  ++LK      N+L
Sbjct: 176 VFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 25/179 (13%)

Query: 2   HNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLG 61
           +   +++ +  + S +     +S+      L N+       N +         K L +L 
Sbjct: 38  NELNSIDQIIANNSDI-----KSVQG-IQYLPNVRYLALGGNKL---HDISALKELTNL- 87

Query: 62  MMSTRIALNTNFLQVIS----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYI 117
              T + L  N LQ +     + + +LK L L  + L +    + D+      +L  L +
Sbjct: 88  ---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK----LTNLTYLNL 140

Query: 118 GSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IP 174
             N L+ SLP      LT+L  LD+S NQL  S+       LT ++ L L  N  + +P
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 56/203 (27%)

Query: 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNNSLSGK 385
              +L    +T  + ++      ++  +  +N++++             L L  N L   
Sbjct: 22  IKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD- 77

Query: 386 IPRWLG---NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-CFHPL 441
               +     LT L Y+I+  N L+      F +L  L+ L + +N +  SLP   F  L
Sbjct: 78  ----ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 442 -SIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLEGEVLVQLC 499
            ++  ++L+ N    QL+          S+P  V D L+ L+ L L +N        QL 
Sbjct: 133 TNLTYLNLAHN----QLQ----------SLPKGVFDKLTNLTELDLSYN--------QLQ 170

Query: 500 E--------LNQLQLLDLSNNNL 514
                    L QL+ L L  N L
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 44/169 (26%), Positives = 65/169 (38%), Gaps = 41/169 (24%)

Query: 261 TKLRQLSLVNDSLG--GPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LYLF 315
             +R L+L  + L               L  L ++ N  +  +P  + D L +   L L 
Sbjct: 63  PNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 316 NNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPE----HLAVGCVNLQSLALSNNNL 371
            N + +L   +   L N   L  L+L++N L   +P+     L     NL  L LS N L
Sbjct: 118 ENQLQSLPDGVFDKLTN---LTYLNLAHNQLQ-SLPKGVFDKL----TNLTELDLSYNQL 169

Query: 372 Q-------------EGLYLNNNSLSGKIPRWLG---NLTWLQYIIMPNN 404
           Q             + L L  N L   +P   G    LT LQYI + +N
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 15/104 (14%)

Query: 328 SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP 387
           +   N    + LDL    +   I E+L        ++  S+N ++         L G   
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--------KLDG--- 59

Query: 388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
                L  L+ +++ NN +          L  L  L +++N++ 
Sbjct: 60  --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 565 TTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624
           T + I    Q         LDL   K I  I      L +   ++ S N++  L    F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFP 61

Query: 625 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
            L+ +++L ++NN++          L  L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 69  LNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRI--LDRGLCSPVHLQELYIGSNDLRG 124
           L    ++  +   +    + L L     G     I  L   L        +    N++R 
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLR----GYKIPVIENLGATL---DQFDAIDFSDNEIR- 55

Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184
            L      L  L+ L V++N++   I       L  + +L L+NN       L+PL +  
Sbjct: 56  KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 185 RLKTFYADNNEL 196
            L       N +
Sbjct: 114 SLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
             ++   +N +  LDG        ++ L+ L ++NN +   I E L     +L  L L+N
Sbjct: 44  FDAIDFSDNEIRKLDG-----FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTN 97

Query: 369 NNLQE 373
           N+L E
Sbjct: 98  NSLVE 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 575 GKVLSLLSGLDLSCNKL--IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632
           G  L     +D S N++  +   P     L R++TL +++N +  +       L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 633 DLSNNKLNG-KIPHQLVELKTLEVFSVAYN 661
            L+NN L        L  LK+L    +  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHL 60
             N      L L G    I +++++ +       +  S    N +    GFP  + L+ L
Sbjct: 15  YTNAVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLLRRLKTL 69

Query: 61  GMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            + + RI       + + +++P L  L L+ ++L       LD  L S   L  L I  N
Sbjct: 70  LVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP-LASLKSLTYLCILRN 123

Query: 121 ---DLRGSLPWCMTNLTSLRILD 140
              + +    + +  +  +R+LD
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVLD 146

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)

Query: 65  TRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            ++ L +  L  +S+     +  L +L+L Y+ L T S+ + D        L  L + +N
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANN 93

Query: 121 DLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEP 179
            L  SLP     +LT L  L +  NQL  S+ S     LT +++L L+ N  Q   S+  
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ---SIPA 148

Query: 180 -LFNH-SRLKTFYADNNEL 196
             F+  + L+T     N+L
Sbjct: 149 GAFDKLTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 24/174 (13%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPH--FKSLEHLGM 62
            + E L L  + L         + F  L  L+    + N +   Q      F  L  L  
Sbjct: 35  ADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDLTEL-- 85

Query: 63  MSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG 118
               + L  N L  +       +  L  L L  + L +  S + DR       L+EL + 
Sbjct: 86  --GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLN 139

Query: 119 SNDLRGSLPW-CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
           +N L+ S+P      LT+L+ L +S+NQL  S+       L  ++ + L  N F
Sbjct: 140 TNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 16/154 (10%)

Query: 373 EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
           E L L +  L+         LT L ++ +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 433 SLPS-CFHPL-SIKQVHLSKNML----HG------QLKR-DLSYNRLNGSIPDWV-DGLS 478
           SLP   F  L  + +++L  N L     G      +LK   L+ N+L  SIP    D L+
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
            L  L L  N L+         L +LQ + L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 34/192 (17%)

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           +P  I      L L +  +  L  +    L     L  L+L  N L   +   +      
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLSDATFRGLTK---LTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLL 420
           L +L L+NN L         SL   +   L  L  L    +  N L+      F +L  L
Sbjct: 85  LGTLGLANNQLA--------SLPLGVFDHLTQLDKLY---LGGNQLKSLPSGVFDRLTKL 133

Query: 421 QILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV-DGL 477
           + L ++ N +  S+P+  F  L+ ++ + LS N    QL+          S+P    D L
Sbjct: 134 KELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTN----QLQ----------SVPHGAFDRL 178

Query: 478 SQLSHLILGHNN 489
            +L  + L   N
Sbjct: 179 GKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 23/158 (14%)

Query: 264 RQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMN 320
            +L L +  L            +L  L++  N  +  +   + D L     L L NN + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-------- 372
           +L   +   L     L  L L  N L   +P  +      L+ L L+ N LQ        
Sbjct: 97  SLPLGVFDHLTQ---LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 373 -----EGLYLNNNSLSGKIPR-WLGNLTWLQYIIMPNN 404
                + L L+ N L   +P      L  LQ I +  N
Sbjct: 153 KLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 54  FKSLEHLGMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP 109
           F+ L  L    T + L+ N LQ +S      +  L  L L+ + L +    + D      
Sbjct: 55  FRGLTKL----TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----L 106

Query: 110 VHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
             L +LY+G N L+ SLP      LT L+ L +++NQL  SI +     LT+++ L LS 
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNN 194
           N  Q  +         +L+T     N
Sbjct: 165 NQLQ-SVPHGAFDRLGKLQTITLFGN 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 10/129 (7%)

Query: 79  ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRI 138
            ++ + K+L+LS + +     +I    L    +L+ L +G N ++  +        +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNA 198
           L +S NQ+    S S +  L ++  LY+SNN       ++ L    +L+      N L  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 199 EITQSHSLT 207
           +  ++++ +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 53  HFKSLEHLGMMSTRIALNTNFLQVIS--ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPV 110
             K+ +HL       AL+TN ++ IS    M +L+ LSL       N  + ++       
Sbjct: 46  TLKACKHL-------ALSTNNIEKISSLSGMENLRILSLGR-----NLIKKIENLDAVAD 93

Query: 111 HLQELYIGSN---DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLS 167
            L+EL+I  N    L G     +  L +LR+L +S+N++T       L  L  +E L L+
Sbjct: 94  TLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 168 NNHFQIPISLEPLFNHSRLK 187
            N            +  R++
Sbjct: 149 GNPLYNDYKENNATSEYRIE 168

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 24/122 (19%)

Query: 326 IPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ------------E 373
           + ++L  +K  + L LS N++  +I   L+ G  NL+ L+L  N ++            E
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIKKIENLDAVADTLE 96

Query: 374 GLYLNNN---SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ-LDLLQILDISDNN 429
            L+++ N   SLSG     +  L  L+ + M NN +     ++    LD L+ L ++ N 
Sbjct: 97  ELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151

Query: 430 IS 431
           + 
Sbjct: 152 LY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 77  ISESMPSLKYLSLSYSTLGTNSSRI--LDRGLCSPVHLQELYIGSN---DLRGSLPWCMT 131
           I E   S+         L      I  +D  L +    + L + +N    +       ++
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LS 67

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLT-SIEKLYLSNNHFQIPISLEPLFNHSRLKTFY 190
            + +LRIL +  N +        L  +  ++E+L++S N      SL  +     L+  Y
Sbjct: 68  GMENLRILSLGRNLIK---KIENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLY 121

Query: 191 ADNNELN 197
             NN++ 
Sbjct: 122 MSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN 637
           L     L LS N  I  I   +  +  ++ L+L  N LI  I +  +    +E L +S N
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN 103

Query: 638 KLNGKIPHQLVELKTLEVFSVAYNNLS 664
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 25/142 (17%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNH---LEGPIPVEFCQLDLLQILDISDNNIS 431
           L+     +  K+   L  L   +++ +  N+   +          ++ L+IL +  N I 
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK 83

Query: 432 GSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 491
                      I+ +    + L  +L   +SYN++  S+   ++ L  L  L + +N + 
Sbjct: 84  ----------KIENLDAVADTLE-EL--WISYNQIA-SLSG-IEKLVNLRVLYMSNNKIT 128

Query: 492 G-EVLVQLCELNQLQLLDLSNN 512
               + +L  L++L+ L L+ N
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGN 150

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 65  TRIALNTNFLQVIS-----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGS 119
           T + LN N L  IS       +P L  L L  + L        +       H+QEL +G 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----ASHIQELQLGE 87

Query: 120 NDLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHF 171
           N ++  +   M   L  L+ L++  NQ++  +      HL S+  L L++N F
Sbjct: 88  NKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 584 LDLSCNKLIGPIPPQ--IGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG 641
           L L+ N+ +G I      G L  +  L L  N L G+ P+ F    H++ L L  NK+  
Sbjct: 34  LLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 642 KIPH----QLVELKTLE 654
           +I +     L +LKTL 
Sbjct: 92  EISNKMFLGLHQLKTLN 108

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 373 EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
           + LYL++N ++   P    +L  L+ + + +N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 433 SLPS-CFHPLS-IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 490
            LPS  F  L  +K++ +  N    +L            +P  ++ L+ L+HL L  N L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCN----KLT----------ELPRGIERLTHLTHLALDQNQL 147

Query: 491 EGEVLVQLCELNQLQLLDLSNN 512
           +         L+ L    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 54  FKSLEHLGMMSTRIALNTNFLQVISE----SMPSLKYLSLSYSTLGTNSSRILDRGLCSP 109
           F SL +L      + L +N L  +      S+  L  L L  + L    S + DR     
Sbjct: 60  FDSLINL----KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR----L 111

Query: 110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           VHL+EL++  N L   LP  +  LT L  L +  NQL  SI       L+S+   YL  N
Sbjct: 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 24/144 (16%)

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLT---GEIPEHLAVG 357
           +P  I      LYL +N +  L+  +  SL N   L+ L L +N L      + + L   
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLEPGVFDSLIN---LKELYLGSNQLGALPVGVFDSL--- 87

Query: 358 CVNLQSLALSNNNLQ-------------EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN 404
              L  L L  N L              + L++  N L+ ++PR +  LT L ++ +  N
Sbjct: 88  -TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

Query: 405 HLEGPIPVEFCQLDLLQILDISDN 428
            L+      F +L  L    +  N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 41/181 (22%), Positives = 52/181 (28%), Gaps = 60/181 (33%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNL---EGEVLVQLCELNQLQLLDLSNNNLHG 516
            L  N++    P   D L  L  L LG N L      V   L    QL +LDL  N L  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQL-- 100

Query: 517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576
                             + L            P          +F+             
Sbjct: 101 ------------------TVL------------PSA--------VFDRLVH--------- 113

Query: 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
               L  L + CNKL   +P  I  LT +  L L  N L  +    F  L  +    L  
Sbjct: 114 ----LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 637 N 637
           N
Sbjct: 169 N 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 21/139 (15%)

Query: 65  TRIALNTNFLQVIS----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
             + L+ N +  +     +S+ +LK L L  + LG     + D        L  L +G+N
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----LTQLTVLDLGTN 98

Query: 121 DLRGSLPWCM-TNLTSLRILDVSSNQLTGSISSSP--LIHLTSIEKLYLSNNHFQ-IPIS 176
            L   LP  +   L  L+ L +  N+LT      P  +  LT +  L L  N  + IP  
Sbjct: 99  QLT-VLPSAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKSIP-- 151

Query: 177 LEPLF-NHSRLKTFYADNN 194
               F   S L   Y   N
Sbjct: 152 -HGAFDRLSSLTHAYLFGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 24/110 (21%)

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            LYL  N        +P  L N K L ++DLSNN ++  +          L +L LS N 
Sbjct: 35  ELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR 89

Query: 371 LQ-------------EGLYLNNNSLSGKIPRWLG---NLTWLQYIIMPNN 404
           L+               L L+ N +S  +P   G   +L+ L ++ +  N
Sbjct: 90  LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE--GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 65  TRIALNTNFLQVISE---SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSND 121
           T + L+ N   ++ +   +   L  + LS + + T S++           L  L +  N 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN----MTQLLTLILSYNR 89

Query: 122 LRGSLPWCMTN-LTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
           LR  +P    + L SLR+L +  N ++  +       L+++  L +  N
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
           L L  N+    +P ++ N   +  ++LS+N +  L   +FSN+  + +L LS N+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 644 PH----QLVELKTLEVFSVAYNNLSGEIPE 669
           P      L  L+ L +     N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHG---NDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P  + ELY+  N     +P  ++N   L ++D+S+N+++ ++S+    ++T +  L LS 
Sbjct: 30  PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87

Query: 169 NHFQIPISLEP-LFNH-SRLKTFYADNNEL 196
           N  +    + P  F+    L+      N++
Sbjct: 88  NRLR---CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 31/103 (30%)

Query: 421 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV-DGLS 478
             L +  N  +  +P                     L   DLS NR++ ++ +     ++
Sbjct: 34  TELYLDGNQFT-LVPKELSNYK-------------HLTLIDLSNNRIS-TLSNQSFSNMT 78

Query: 479 QLSHLILGHNNLEGEVLVQLC-------ELNQLQLLDLSNNNL 514
           QL  LIL +N L        C        L  L+LL L  N++
Sbjct: 79  QLLTLILSYNRLR-------CIPPRTFDGLKSLRLLSLHGNDI 114

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
           ++ L L N        E L    VNL+ L+L N  L         S+S      L  L  
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--------SVSN-----LPKLPK 72

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
           L+ + +  N + G + +   +L  L  L++S N + 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
           LD   +   G I         ++ L+L +  LI +  S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87

Query: 644 PHQLVELKTLEVFSVAYNNLS 664
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 289 MLDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
            L + N          +     +   L L N  + ++       L  +  L+ L+LS N 
Sbjct: 28  ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKLELSENR 82

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQE 373
           + G   + LA    NL  L LS N L++
Sbjct: 83  IFG-GLDMLAEKLPNLTHLNLSGNKLKD 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 581 LSGLDLSCNKL--IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
           L  L L    L  +  +P     L +++ L LS N + G +      L ++  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 639 LNG-KIPHQLVELKTLEVFSVAYN 661
           L        L +L+ L+   +   
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 3   NFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGM 62
               +  L L     +   ++ + + F +L+ LS+    +  V      P    L+ L +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 63  MSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN-- 120
              RI      L +++E +P+L +L+LS + L       L+  L     L+ L + +   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 121 -DLRGSLPWCMTNLTSLRILD 140
            +L          L  L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 77  ISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL 136
           ++    +L++LSL            +   L     L++L +  N + G L      L +L
Sbjct: 44  LTAEFVNLEFLSLIN-----VGLISVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 137 RILDVSSNQLTGSISSSPLIHLTSIEKLYLSNN 169
             L++S N+L    +  PL  L  ++ L L N 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 74  LQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSP-VHLQELYIGSNDLR--GSLPWCM 130
           L++ + +  +++ L L        S+     GL +  V+L+ L + +  L    +LP   
Sbjct: 16  LELRNRTPAAVRELVLD----NCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP--- 68

Query: 131 TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFY 190
             L  L+ L++S N++           L ++  L LS N  +   +LEPL     LK+  
Sbjct: 69  -KLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 191 ADNNEL 196
             N E+
Sbjct: 127 LFNCEV 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
           ++ L L N+       E L      L+ L+  N  L         S++      L  L  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIAN-----LPKLNK 65

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
           L+ + + +N + G + V   +   L  L++S N I 
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 290 LDISNNNFRGHIPIEIGDVLPS---LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHL 346
           L + N+         + D       L   N  + ++       L  +  L+ L+LS+N +
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELSDNRV 76

Query: 347 TGEIPEHLAVGCVNLQSLALSNNNLQE 373
           +G   E LA  C NL  L LS N +++
Sbjct: 77  SG-GLEVLAEKCPNLTHLNLSGNKIKD 102

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKL-IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSN 625
           + I    + +  S +  L L  ++   G +         ++ L+  +  L  +  +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK 62

Query: 626 LKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 664
           L  ++ L+LS+N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKL--IGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS 624
                         L  L      L  I  +P     L +++ L LS N + G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 625 NLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 661
              ++  L+LS NK+        L +L+ L+   +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 74  LQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR--GSLPWCMT 131
           L++ + +   +K L L  S   +N  ++          L+ L   +  L    +LP    
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLTSIANLP---- 61

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
            L  L+ L++S N+++            ++  L LS N  +   ++EPL     LK+   
Sbjct: 62  KLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 192 DNNEL 196
            N E+
Sbjct: 121 FNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 17/99 (17%)

Query: 416 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-DLSYNRLNGSIPDWV 474
           + + L+ L   +  ++          SI  +          LK+ +LS NR++G +    
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLPKLNK-----LKKLELSDNRVSGGLEVLA 84

Query: 475 DGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNN 512
           +    L+HL L  N ++    +  L +L  L+ LDL N 
Sbjct: 85  EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 16/137 (11%)

Query: 65  TRIALNTNFLQVIS----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
           T + L TN L+ +     + + SL  L L  + L +  + + ++       L  L + +N
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK----LTSLTYLNLSTN 86

Query: 121 DLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ-IPISLE 178
            L+ SLP      LT L+ L +++NQL  S+       LT ++ L L  N  + +P   +
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVP---D 141

Query: 179 PLF-NHSRLKTFYADNN 194
            +F   + L+  +  +N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 373 EGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 432
             L L  NSL          LT L  + +  N L+      F +L  L  L++S N +  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 433 SLPS-CFHPLS-IKQVHLSKNML----HG------QLKR-DLSYNRLNGSIPDWV-DGLS 478
           SLP+  F  L+ +K++ L+ N L     G      QLK   L  N+L  S+PD V D L+
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148

Query: 479 QLSHLILGHNN 489
            L ++ L H+N
Sbjct: 149 SLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 19/110 (17%)

Query: 309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
           L  LYL  N + +L   + + L +   L  L+LS N L   +P  +      L+ LAL+ 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTS---LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109

Query: 369 NNLQ-------------EGLYLNNNSLSGKIPR-WLGNLTWLQYIIMPNN 404
           N LQ             + L L  N L   +P      LT LQYI + +N
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 5   TNLEYLTLHGSSLHISLLQSIA-SIFPSLKNLSISY--------CEVNGVVHGQGFPHFK 55
            NL+ L +    L  S+++ I  S  P+L+ L +           ++N          F 
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 56  SLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQEL 115
           +L+ LG++          + + S+ +P L+ + +S   L    +R+L   +    HL+ +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 116 YIGSNDL 122
            +  N L
Sbjct: 313 NMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 20/203 (9%)

Query: 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN 249
           + +      E      +      L+ L +     + ++  K       L+++E+    + 
Sbjct: 151 FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT--NNLSIGKKPRPN--LKSLEIISGGLP 206

Query: 250 GEFPTWLLE-NNTKLRQLSLVNDSLGGPFR---------LPIHSHKRLGMLDISNNNFRG 299
                 +L  +   L +L L        F                  L  L I +   + 
Sbjct: 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266

Query: 300 HIPIEIG--DVLPSLYLFNNSMNALDGS----IPSSLGNMKFLQILDLSNNHLTGEIPEH 353
            +       D+LP L   + S   L       +   +  +K L+ +++  N+L+ E+ + 
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326

Query: 354 LAVGCVNLQSLALSNNNLQEGLY 376
           L         ++ S     +  Y
Sbjct: 327 LQKSLPMKIDVSDSQEYDDDYSY 349

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 18/159 (11%)

Query: 1   LHNFTNLEYLTL-HGSSLHISLLQSIASIFPSLKNLSISYCEV-NGVVHGQGFPHFKSLE 58
           L     L  L +   ++L I          P+LK+L I    + + VV         +LE
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPR-----PNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 59  HLGM-MSTRIALNTNFLQVIS-----ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHL 112
            L + +          + V       +  P+LK+L +  +        +       P  L
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-QL 281

Query: 113 QELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLT 147
           + + I +  L       L   +  +  L+ +++  N L+
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 56/325 (17%)

Query: 69  LNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPW 128
                 +  +E + SL+ L+L+   +      ++   L S                    
Sbjct: 59  YEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGS-------------------- 98

Query: 129 CMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ----IPISLEPLFNHS 184
                 +L  ++++S QL  +   + L       KL L  N         +    L +  
Sbjct: 99  ---GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC 155

Query: 185 RLKTFYADNNELNAEITQ--SHSLTAPNFQLSRLSLSS---GYEDGVTFPKFLYHQHDLE 239
           ++ T    NN L A         L   N  ++ LSL     G E        L     L+
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214

Query: 240 TVELSHIKMNGEFPTWL---LENNTKLRQLSLVNDSLG-------GPFRLPIHSHKRLGM 289
            + +++          L      +  L  L L  + L                   R+ +
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
                     +  + + +V  +     NS +         +     L + DL ++     
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRN----LNSWDRAR------VQRHLELLLRDLEDSRGATL 324

Query: 350 IPEHLAVGC-VN--LQSLALSNNNL 371
            P   A    V   +++L     + 
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 1   LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEV--NGVVH-GQGFPHFKS- 56
                 L+ + L    L  + L+++  +F   + L +    +             H +  
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 57  LEHLGMMSTRIALNTNFL-----QVISE---SMPSLKYLSLSYSTLGTNSSRILDRGLCS 108
           +  L        L+ N L      V+ E      S+ +LSL ++ LG     +L   L  
Sbjct: 157 ITTLR-------LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209

Query: 109 PVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLT 147
              LQEL +  N    +    L        SL +L +  N+L+
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.4e-70  Score=633.09  Aligned_cols=656  Identities=29%  Similarity=0.417  Sum_probs=526.5

Q ss_pred             CCCCCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCC-CcCCCCCCCcEEeCCCCccccCcchhHHHHh
Q 041867            1 LHNFTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHG-QGFPHFKSLEHLGMMSTRIALNTNFLQVISE   79 (776)
Q Consensus         1 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~   79 (776)
                      |.++++|+.++++.+.+.. .+.. +..+++|++|+|++|.+.+.+|. ..+.++++|++|++++|  .+.+..+..+..
T Consensus        73 l~~L~~L~~l~~~~~~~~~-l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~  148 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN--TLDFPGKVSGGL  148 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEE-CCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS--EEECCSSCCSCC
T ss_pred             HhccCcccccCCcCCCcCC-Cchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC--ccCCcCCHHHhc
Confidence            4567888888888876532 3355 88999999999999999876663 25888999999999999  555555555533


Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcC---CCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCccccc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRG---LCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLI  156 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~  156 (776)
                      ++++|++|++++|.+++   ..+ ..   +.++++|++|++++|.+++..+  +..+++|++|++++|.+++.+|.  +.
T Consensus       149 ~l~~L~~L~Ls~n~l~~---~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~  220 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISG---ANV-VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LG  220 (768)
T ss_dssp             CCTTCSEEECCSSCCEE---ETH-HHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CT
T ss_pred             cCCCCCEEECCCCccCC---cCC-hhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cc
Confidence            88999999999999876   333 23   7888999999999999986554  47899999999999999865654  88


Q ss_pred             CCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCC-
Q 041867          157 HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQ-  235 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-  235 (776)
                      ++++|++|++++|.+++.++ ..+..+++|++|++++|.+.+..+..     ...+|+.|++ ..+.+.+.+|..+... 
T Consensus       221 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~l~~L~~L~L-~~n~l~~~ip~~~~~~~  293 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL-----PLKSLQYLSL-AENKFTGEIPDFLSGAC  293 (768)
T ss_dssp             TCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC-----CCTTCCEEEC-CSSEEEESCCCCSCTTC
T ss_pred             cCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc-----ccCCCCEEEC-cCCccCCccCHHHHhhc
Confidence            99999999999999886544 46888999999999999887544432     3458999999 7888888889888775 


Q ss_pred             CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCC-CCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLP-IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      ++|++|++++|.+.+.+|..+ +++++|+.|++++|.+.+..+.. +..+++|++|++++|.+.+.+|..+....++|+.
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             CcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            999999999999998899886 89999999999999998766654 8899999999999999998999888774349999


Q ss_pred             eecccccCccCCCccCCC--CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867          315 FNNSMNALDGSIPSSLGN--MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN  392 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~  392 (776)
                      |++++|.+.+..|..+..  +++|++|++++|.+++.+|..+. .+++|+.|++++|           .+++..|..+..
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N-----------~l~~~~p~~l~~  440 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN-----------YLSGTIPSSLGS  440 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSS-----------EEESCCCGGGGG
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCC-----------cccCcccHHHhc
Confidence            999999999888888877  88999999999999977777665 6999999995555           455678999999


Q ss_pred             CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCC
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP  471 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  471 (776)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. +++|++|++++|+             +++.+|
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p  507 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-------------LTGEIP  507 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------------CCSCCC
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-------------cCCcCC
Confidence            99999999999999999999999999999999999999988888776 8899999666655             446788


Q ss_pred             hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCC----------cchh-
Q 041867          472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS----------LDEQ-  540 (776)
Q Consensus       472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~-  540 (776)
                      .++..+++|+.|++++|++++..|..+..+++|+.|++++|++.+.+|..+..............          .... 
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC  587 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence            89999999999999999999999999999999999999999999999887655432211110000          0000 


Q ss_pred             --hhcccccCCCCCCccccc--cceeeeeecceEE--EeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc
Q 041867          541 --FEIFFSIESPQGNVEKQI--HEIFEFTTKNIVY--IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND  614 (776)
Q Consensus       541 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  614 (776)
                        ..................  ........+....  ......+++|+.|||++|++++.+|..++++++|+.|+|++|+
T Consensus       588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  667 (768)
T 3rgz_A          588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND  667 (768)
T ss_dssp             CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence              000000000000000000  0000000011100  0111336789999999999999999999999999999999999


Q ss_pred             ccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867          615 LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  694 (776)
Q Consensus       615 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~  694 (776)
                      +++.+|..|+++++|+.|||++|++++.+|+.+..+++|++||+++|+++|.+|.. .++.++...++.|||.+|+.|+.
T Consensus       668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~  746 (768)
T 3rgz_A          668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP  746 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC
T ss_pred             cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999985 78999999999999999999988


Q ss_pred             CCCCCCCC
Q 041867          695 ICRSPATM  702 (776)
Q Consensus       695 ~c~~~~~~  702 (776)
                      .|......
T Consensus       747 ~C~~~~~~  754 (768)
T 3rgz_A          747 RCDPSNAD  754 (768)
T ss_dssp             CCCSCC--
T ss_pred             CCCCCccC
Confidence            88755443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-65  Score=597.69  Aligned_cols=643  Identities=25%  Similarity=0.345  Sum_probs=527.4

Q ss_pred             CCCcEEECCCCCCCCc---cchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhH--HHHh
Q 041867            5 TNLEYLTLHGSSLHIS---LLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQ--VISE   79 (776)
Q Consensus         5 ~~L~~L~L~~n~~~~~---~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~--~~~~   79 (776)
                      .+++.|+|+++.+.+.   ++.+ +..+++|+.++++.+.+. ..+. .+.++++|++|++++|  .+.+..+.  .+. 
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~l~-  123 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRN--SLSGPVTTLTSLG-  123 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHH-TTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSS--EEEEEGGGGGGGG-
T ss_pred             CcEEEEECCCCCcCCccCccChh-HhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCC--cCCCcCCChHHHh-
Confidence            4689999999999987   7777 889999999999999875 3444 7999999999999999  66677776  777 


Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcc---ccCCCCCCEEeCCCCcCcccCCccccc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC---MTNLTSLRILDVSSNQLTGSISSSPLI  156 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~i~~~~~~  156 (776)
                      ++++|++|++++|.+.+   .++...+.++++|++|+|++|++++..+..   +.++++|++|++++|.+.+.++   +.
T Consensus       124 ~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~  197 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VS  197 (768)
T ss_dssp             GCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CT
T ss_pred             CCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cc
Confidence            99999999999999976   566544588999999999999999887777   8899999999999999985443   48


Q ss_pred             CCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCC
Q 041867          157 HLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH  236 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (776)
                      .+++|++|++++|.+.+.++.  +..+++|++|++++|.+.+..+..+   ....+|+.|++ ..+.+.+.+|..  .++
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L-s~n~l~~~~~~~--~l~  269 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNI-SSNQFVGPIPPL--PLK  269 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT---TTCSSCCEEEC-CSSCCEESCCCC--CCT
T ss_pred             cCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH---hcCCCCCEEEC-CCCcccCccCcc--ccC
Confidence            899999999999999876663  8999999999999999886555443   23348999999 777777777765  789


Q ss_pred             CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867          237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN  316 (776)
Q Consensus       237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~  316 (776)
                      +|++|++++|.+.+.+|..+...+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|......+++|++|+
T Consensus       270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~  349 (768)
T 3rgz_A          270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD  349 (768)
T ss_dssp             TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred             CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence            99999999999998899887555699999999999999888889999999999999999998888887555588999999


Q ss_pred             cccccCccCCCccCCCCC-CCCEEEccCCcCCCcCchhhhh-cCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          317 NSMNALDGSIPSSLGNMK-FLQILDLSNNHLTGEIPEHLAV-GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       317 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      +++|.+.+.+|..+..++ +|++|++++|.+.+.+|..... .+++|++|++++|           .+++..|..+..++
T Consensus       350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-----------~l~~~~p~~l~~l~  418 (768)
T 3rgz_A          350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-----------GFTGKIPPTLSNCS  418 (768)
T ss_dssp             CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-----------EEEEECCGGGGGCT
T ss_pred             CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-----------ccccccCHHHhcCC
Confidence            999999988898888887 8999999999998777776653 2678999995555           45567899999999


Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      +|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|++|++++|++             ++.+|.+
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-------------~~~~p~~  485 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-------------TGEIPSG  485 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-------------CSCCCGG
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc-------------cCcCCHH
Confidence            999999999999999999999999999999999999988888776 88999997666554             4577888


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCC-CCcchhhhcc-cccCC-C
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNS-SSLDEQFEIF-FSIES-P  550 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~  550 (776)
                      +.++++|+.|++++|++++..|..+..+++|++|++++|++.+.+|..+..++..+..... +.+....... +.... .
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            9999999999999999999999999999999999999999999999988887755443322 2222111110 00000 0


Q ss_pred             CCCccccccceeeeeecce---------EEEe------ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccc
Q 041867          551 QGNVEKQIHEIFEFTTKNI---------VYIY------QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDL  615 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~---------~~~~------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  615 (776)
                      ...... -...........         ...+      ....++.+..++++.|.+.+.+|..+..+++|+.|||++|++
T Consensus       566 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          566 AANFIA-GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             CCSTTC-SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             hhhccc-cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence            000000 000000000000         0000      012244566788889999999999999999999999999999


Q ss_pred             cccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          616 IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       616 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++.+|..++.+++|+.|+|++|++++.+|+.++.+++|+.||+++|+++|.+|..+..++.++.+++++|+.....|
T Consensus       645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997754433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-60  Score=552.43  Aligned_cols=591  Identities=21%  Similarity=0.219  Sum_probs=437.9

Q ss_pred             CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867            7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY   86 (776)
Q Consensus         7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~   86 (776)
                      -+.+++++++++. +|.. +  .+++++|+|++|.+.+..+. .|.++++|++|++++|  .+.+..+..+. ++++|++
T Consensus         6 ~~~~~cs~~~L~~-ip~~-~--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~   77 (680)
T 1ziw_A            6 HEVADCSHLKLTQ-VPDD-L--PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFN--TISKLEPELCQ-KLPMLKV   77 (680)
T ss_dssp             SSEEECCSSCCSS-CCSC-S--CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSS--CCCCCCTTHHH-HCTTCCE
T ss_pred             CCeeECCCCCccc-cccc-c--CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCC--ccCccCHHHHh-cccCcCE
Confidence            3678888888764 4544 3  27899999999998754443 7888999999999999  56666677777 8999999


Q ss_pred             EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEec
Q 041867           87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL  166 (776)
Q Consensus        87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  166 (776)
                      |++++|.++.    +++..|+++++|++|++++|++++..|..|+++++|++|++++|.+++..+. .+.++++|++|++
T Consensus        78 L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L  152 (680)
T 1ziw_A           78 LNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLL  152 (680)
T ss_dssp             EECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEEC
T ss_pred             EECCCCccCc----cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEc
Confidence            9999998875    6666788999999999999999877778899999999999999998844444 7888999999999


Q ss_pred             cCCccccccCcccc--cCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccc---cCCCCcCEE
Q 041867          167 SNNHFQIPISLEPL--FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFL---YHQHDLETV  241 (776)
Q Consensus       167 ~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~L~~L  241 (776)
                      ++|.+++. +...+  ..+++|++|++++|.+....+..+.   ...+|+.+++ ..+.........+   ...++|+.|
T Consensus       153 ~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L  227 (680)
T 1ziw_A          153 SNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEFSPGCFH---AIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNL  227 (680)
T ss_dssp             CSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCBCTTGGG---GSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred             cCCccccc-CHHHhhccccccccEEECCCCcccccChhhhh---hhhhhhhhhc-cccccChhhHHHHHHHhhhccccEE
Confidence            99988743 32333  3568899999999988765443321   2236777777 4443332211111   134788889


Q ss_pred             EcCCCCCcccCChHHhhcCC--CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeeccc
Q 041867          242 ELSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM  319 (776)
Q Consensus       242 ~l~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~  319 (776)
                      ++++|.+.+..|.++ .+++  +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.. +++|+.+++++
T Consensus       228 ~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~  305 (680)
T 1ziw_A          228 SLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKR  305 (680)
T ss_dssp             ECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTT
T ss_pred             EccCCcccccChhHh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccc
Confidence            999888887777665 5554  4899999999888888888888889999999998888666666655 78888888887


Q ss_pred             ccCcc-----CCC----ccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          320 NALDG-----SIP----SSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       320 n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      |...+     .+|    ..|..+++|++|++++|.+. .++...+.++++|++|++++|.+.         +....+..|
T Consensus       306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~---------~~~l~~~~f  375 (680)
T 1ziw_A          306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTS---------LRTLTNETF  375 (680)
T ss_dssp             CBCCC------CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSC---------CCEECTTTT
T ss_pred             hhhhcccccccccccChhhcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchh---------hhhcchhhh
Confidence            65442     222    26778889999999999988 566666678889999998777643         111122223


Q ss_pred             cCC--CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCccc
Q 041867          391 GNL--TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRL  466 (776)
Q Consensus       391 ~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l  466 (776)
                      ..+  ++|+.|++++|++.+..+..|..+++|+.|++++|.+.+..+ ..+. +.+|+++++++|++             
T Consensus       376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-------------  442 (680)
T 1ziw_A          376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-------------  442 (680)
T ss_dssp             GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-------------
T ss_pred             cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-------------
Confidence            322  578888888888887777778888888888888888765443 3443 67788886655544             


Q ss_pred             cccCChhhccCccCCEEEcccccCC--ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867          467 NGSIPDWVDGLSQLSHLILGHNNLE--GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF  544 (776)
Q Consensus       467 ~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (776)
                      .+..+..|..+++|+.|++++|.+.  +..|..|..+++|+.|++++|++++..+..|..++                  
T Consensus       443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~------------------  504 (680)
T 1ziw_A          443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE------------------  504 (680)
T ss_dssp             EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------------
T ss_pred             ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc------------------
Confidence            3455666777888888888888776  45667778888888888888888877776666544                  


Q ss_pred             cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh--------hhhccCccCCeeeccccccc
Q 041867          545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP--------PQIGNLTRIQTLNLSHNDLI  616 (776)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~  616 (776)
                                                         +|++|++++|++++..+        ..|.++++|++|+|++|+++
T Consensus       505 -----------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          505 -----------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             -----------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence                                               78888888888774321        23677888888888888888


Q ss_pred             ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccc-cccccCcccccCCCCCCCCCC
Q 041867          617 GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       617 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      .+++..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++++.+++++|||.|+|+.
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            77767788888888888888888877777778888888888888888877776665 677888888888888888874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-56  Score=528.43  Aligned_cols=561  Identities=22%  Similarity=0.225  Sum_probs=408.3

Q ss_pred             cEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcch-hHHHHhcCCCccE
Q 041867            8 EYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNF-LQVISESMPSLKY   86 (776)
Q Consensus         8 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~l~~L~~   86 (776)
                      +..+.++++++. +|.    ..+++++|+|++|.+.+..+. .|.++++|++|++++|  ...+.+ +..+. ++++|++
T Consensus         7 ~~~dcs~~~L~~-vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n--~~~~~i~~~~f~-~L~~L~~   77 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQ--YTPLTIDKEAFR-NLPNLRI   77 (844)
T ss_dssp             EEEEESCCCSSC-CCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTT--CCCCEECTTTTS-SCTTCCE
T ss_pred             eEEEccCCCCCC-CCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCC--CCccccCHHHhc-CCCCCCE
Confidence            356667776663 232    446788888888888755554 7888888888888887  333444 44444 7778888


Q ss_pred             EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcc--ccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEE
Q 041867           87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC--MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL  164 (776)
Q Consensus        87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  164 (776)
                      |+|++|.+.+    +.+..|..+++|++|+|++|.+++..|..  |.++++|++|+|++|.+++..+...|+++++|++|
T Consensus        78 L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           78 LDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             EECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             EECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            8888877765    43457777778888888888777655544  77777888888888877744443367777788888


Q ss_pred             eccCCccccccCcccccCC--CCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCC------
Q 041867          165 YLSNNHFQIPISLEPLFNH--SRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH------  236 (776)
Q Consensus       165 ~L~~n~l~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------  236 (776)
                      ++++|.+++..+ ..+..+  ++|+.|+++.|.+..                            ..|..+..++      
T Consensus       154 ~Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~----------------------------~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          154 DFSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYS----------------------------RVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             EEESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCC----------------------------CCCCCCCSSSCTTTTC
T ss_pred             ECCCCcCCeeCH-HHcccccCCccceEECCCCcccc----------------------------ccccchhhcCCccccC
Confidence            887777764322 334444  667777776665543                            2222222222      


Q ss_pred             CcCEEEcCCCCCcccCChHHhhcC--CCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc-cCcccc
Q 041867          237 DLETVELSHIKMNGEFPTWLLENN--TKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD-VLPSLY  313 (776)
Q Consensus       237 ~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~l~~L~  313 (776)
                      .|+.|++++|.+.+..+..+....  +.++.+.+..+.+...               +..+.+.+..+..+.. ..++|+
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~  269 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVR  269 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCC
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCcc
Confidence            489999999988877777653322  4566777664433221               0112222111111111 136888


Q ss_pred             eeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCC
Q 041867          314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNL  393 (776)
Q Consensus       314 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l  393 (776)
                      .|++++|.+.+..+..|..+++|+.|++++|.+. .++...+.++++|++|++++|.           +++..+..|.++
T Consensus       270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~-----------l~~~~~~~~~~l  337 (844)
T 3j0a_A          270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNL-----------LGELYSSNFYGL  337 (844)
T ss_dssp             EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCC-----------CSCCCSCSCSSC
T ss_pred             EEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCC-----------CCccCHHHhcCC
Confidence            9999999988888888899999999999999998 5655666788999999955554           455678889999


Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      ++|++|++++|.+....+..|..+++|+.|++++|.+.+...    +++|+++++++|++.              .+|. 
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~--------------~l~~-  398 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV--------------TLPK-  398 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC--------------CCCC-
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc--------------cccc-
Confidence            999999999999998888889999999999999999875432    678899988887765              2222 


Q ss_pred             hccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCC-CcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPC-FDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                        ...+++.|++++|++++... ..+..+++|+.|++++|++++..+.. +..                           
T Consensus       399 --~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------  449 (844)
T 3j0a_A          399 --INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------  449 (844)
T ss_dssp             --CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------
T ss_pred             --cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------
Confidence              24678999999999987543 34568999999999999998655432 221                           


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCC-----CCChhhhccCccCCeeecccccccccCccccCCC
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-----GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL  626 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  626 (776)
                                                +++|+.|++++|.++     +..+..|.++++|+.|+|++|.+++++|..|.++
T Consensus       450 --------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  503 (844)
T 3j0a_A          450 --------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL  503 (844)
T ss_dssp             --------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred             --------------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence                                      348999999999997     4556778999999999999999999999999999


Q ss_pred             CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC------------
Q 041867          627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------  694 (776)
Q Consensus       627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~------------  694 (776)
                      ++|+.|+|++|++++..|..+.  ++|+.|++++|++++..|..+   ..+..+++++|||.|+|+..            
T Consensus       504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~  578 (844)
T 3j0a_A          504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVT  578 (844)
T ss_dssp             CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTT
T ss_pred             hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCcc
Confidence            9999999999999987777766  899999999999999888754   57888999999999999752            


Q ss_pred             --------CCCCCCCCCCCCCCCCCCCCcc
Q 041867          695 --------ICRSPATMSEASIGNERDDNLI  716 (776)
Q Consensus       695 --------~c~~~~~~~~~~~~~~~~~~~~  716 (776)
                              .|..|....+.++.......|.
T Consensus       579 ~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~  608 (844)
T 3j0a_A          579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCD  608 (844)
T ss_dssp             TCCCGGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred             cccccccCccCCchhhCCCccccCccccCC
Confidence                    5888888877766665555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.4e-54  Score=496.39  Aligned_cols=564  Identities=21%  Similarity=0.220  Sum_probs=458.7

Q ss_pred             CEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCC
Q 041867           33 KNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHL  112 (776)
Q Consensus        33 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L  112 (776)
                      +.++.++++++ .+|. .+.  +++++|++++|  .+.+..+..+. ++++|++|++++|.+++    +.+..|.++++|
T Consensus         7 ~~~~cs~~~L~-~ip~-~~~--~~l~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L   75 (680)
T 1ziw_A            7 EVADCSHLKLT-QVPD-DLP--TNITVLNLTHN--QLRRLPAANFT-RYSQLTSLDVGFNTISK----LEPELCQKLPML   75 (680)
T ss_dssp             SEEECCSSCCS-SCCS-CSC--TTCSEEECCSS--CCCCCCGGGGG-GGTTCSEEECCSSCCCC----CCTTHHHHCTTC
T ss_pred             CeeECCCCCcc-cccc-ccC--CCCcEEECCCC--CCCCcCHHHHh-CCCcCcEEECCCCccCc----cCHHHHhcccCc
Confidence            57889999886 5665 343  79999999999  55666666666 99999999999999986    545588999999


Q ss_pred             CEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcc
Q 041867          113 QELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYAD  192 (776)
Q Consensus       113 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  192 (776)
                      ++|+|++|+++...+..|+++++|++|++++|.++ .++...|.++++|++|++++|.+++. +...+.++++|++|+++
T Consensus        76 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLS  153 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECC
T ss_pred             CEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEcc
Confidence            99999999999766678999999999999999998 66655899999999999999999854 44568899999999999


Q ss_pred             cCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHh--hcCCCCcEEEccC
Q 041867          193 NNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLL--ENNTKLRQLSLVN  270 (776)
Q Consensus       193 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~L~~  270 (776)
                      +|.+.......+.. ....+|+.|++ ..+.+.+..|..+..+++|+.++++++.+.+.....+.  -..++|+.|++++
T Consensus       154 ~n~l~~~~~~~~~~-~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          154 NNKIQALKSEELDI-FANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             SSCCCCBCHHHHGG-GTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             CCcccccCHHHhhc-cccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            99987654433211 12247999999 77777888888888999999999999887643332221  1347899999999


Q ss_pred             CCCcCcCCCCCCCCCC--cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCC
Q 041867          271 DSLGGPFRLPIHSHKR--LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG  348 (776)
Q Consensus       271 n~~~~~~~~~~~~~~~--L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  348 (776)
                      |.+.+..+..+..++.  |+.|++++|.+.+..+..+.. +++|+.|++++|.+.+..|..|..+++|++|++++|...+
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            9999888888887755  999999999998666655554 8899999999999998888899999999999998875443


Q ss_pred             --------cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc--CCCcccCCC-
Q 041867          349 --------EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG--PIPVEFCQL-  417 (776)
Q Consensus       349 --------~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l-  417 (776)
                              .++...+..+++|++|++++|           .+.+..+..|.++++|++|++++|.+..  .....|..+ 
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-----------~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~  379 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDN-----------DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA  379 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSC-----------CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred             ccccccccccChhhcccCCCCCEEECCCC-----------ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence                    222335567888998885544           4556777888999999999999987542  233344433 


Q ss_pred             -CCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867          418 -DLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL  495 (776)
Q Consensus       418 -~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  495 (776)
                       ++|+.|++++|++.+..+..+. +.+|++|++++|.+.+.            ..+..|.++++|+.|++++|++.+..+
T Consensus       380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE------------LTGQEWRGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE------------CCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred             cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc------------cCcccccCcccccEEecCCCCcceeCh
Confidence             5899999999999988887776 88899997777665421            223678889999999999999998888


Q ss_pred             hhhcCCCCCCEEeCCCCccc--CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867          496 VQLCELNQLQLLDLSNNNLH--GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY  573 (776)
Q Consensus       496 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (776)
                      ..|..+++|+.|++++|.+.  +..|..+..++                                               
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-----------------------------------------------  480 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR-----------------------------------------------  480 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT-----------------------------------------------
T ss_pred             hhhhcCcccccchhccccccccccCCcccccCC-----------------------------------------------
Confidence            89999999999999999886  45566665543                                               


Q ss_pred             ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc--------cccCCCCCCCEEECcCCccCCcCCc
Q 041867          574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP--------STFSNLKHVESLDLSNNKLNGKIPH  645 (776)
Q Consensus       574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~  645 (776)
                            +|+.|++++|++++..+..|.++++|++|++++|+++++.+        ..|.++++|+.|+|++|+++.+.+.
T Consensus       481 ------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~  554 (680)
T 1ziw_A          481 ------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE  554 (680)
T ss_dssp             ------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH
Confidence                  89999999999999888999999999999999999997633        2378899999999999999966667


Q ss_pred             cccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCC
Q 041867          646 QLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL  688 (776)
Q Consensus       646 ~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  688 (776)
                      .|..+++|+.|++++|++++..+..+..++.++.+++++|...
T Consensus       555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  597 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT  597 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence            8999999999999999999877777888999999999999653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-54  Score=493.17  Aligned_cols=560  Identities=19%  Similarity=0.213  Sum_probs=350.9

Q ss_pred             CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867            7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY   86 (776)
Q Consensus         7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~   86 (776)
                      -++++.++..++ .+|.. +  .+++++|++++|.+.+..+. +|.++++|++|++++|  .+.+..+..+. ++++|++
T Consensus        14 ~~~~~c~~~~l~-~iP~~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~l~~L~~   85 (606)
T 3t6q_A           14 NKTYNCENLGLN-EIPGT-L--PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRC--QIYWIHEDTFQ-SQHRLDT   85 (606)
T ss_dssp             TTEEECTTSCCS-SCCTT-S--CTTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred             CceEECCCCCcc-cCcCC-C--CCcCcEEEccCCccCcCChh-HhccCccceEEECCCC--ccceeChhhcc-CccccCe
Confidence            346777777766 34544 2  34789999999999855554 8899999999999999  55666677777 8999999


Q ss_pred             EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEec
Q 041867           87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYL  166 (776)
Q Consensus        87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  166 (776)
                      |++++|.+.+    +.+..|+++++|++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus        86 L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  160 (606)
T 3t6q_A           86 LVLTANPLIF----MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDF  160 (606)
T ss_dssp             EECTTCCCSE----ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEEC
T ss_pred             eeCCCCcccc----cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccCcccccCCcccCEEEc
Confidence            9999998875    44458889999999999999998777788999999999999999988 443224566899999999


Q ss_pred             cCCccccccCcccccCCCCCc--EEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867          167 SNNHFQIPISLEPLFNHSRLK--TFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS  244 (776)
Q Consensus       167 ~~n~l~~~~~~~~l~~l~~L~--~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  244 (776)
                      ++|.+++ ++...+..+++|+  .|++++|.+....+..                             ....+|+.|+++
T Consensus       161 ~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-----------------------------~~~~~L~~L~l~  210 (606)
T 3t6q_A          161 QNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-----------------------------FDSAVFQSLNFG  210 (606)
T ss_dssp             CSSCCCE-ECHHHHHTTTTCCSEEEECTTCCCCEECTTT-----------------------------TTTCEEEEEECT
T ss_pred             ccCcccc-cChhhhhhhcccceeEEecCCCccCccChhH-----------------------------hhhccccccccC
Confidence            9998873 4445677888888  7888888776433221                             122355666666


Q ss_pred             CCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867          245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG  324 (776)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  324 (776)
                      ++.   .++.. +.++..++...+.-..+..           +...+++...+     ..+..  .+|+.+++++|.+.+
T Consensus       211 ~~~---~~~~~-~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~-----~~l~~--~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          211 GTQ---NLLVI-FKGLKNSTIQSLWLGTFED-----------MDDEDISPAVF-----EGLCE--MSVESINLQKHYFFN  268 (606)
T ss_dssp             TCS---CHHHH-HHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGG-----GGGGG--SEEEEEECTTCCCSS
T ss_pred             Cch---hHHHH-hhhccccchhheechhhcc-----------ccccccChhHh-----chhhc--CceeEEEeecCccCc
Confidence            554   12222 2344444333332221111           11011111100     01110  145555555555554


Q ss_pred             CCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCC
Q 041867          325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN  404 (776)
Q Consensus       325 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  404 (776)
                      ..+..|..+++|++|++++|.++ .+|..+. ++++|++|++++|+           +.+..|..+..+++|++|++++|
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~-----------l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANK-----------FENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCC-----------CSBGGGGCGGGCTTCSEEECCSC
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCC-----------cCcCchhhhhccCcCCEEECCCC
Confidence            44444555555555555555555 4554432 35555555533332           22334444555555555555555


Q ss_pred             ccccCCC-cccCCCCCCcEEEccccccCCCC--CCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccC
Q 041867          405 HLEGPIP-VEFCQLDLLQILDISDNNISGSL--PSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQL  480 (776)
Q Consensus       405 ~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L  480 (776)
                      .+.+..+ ..+..+++|++|++++|.+.+..  +..+. +++|++|++++|++             .+..|..|..+++|
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~~~~~~~~l~~L  402 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-------------LSLKTEAFKECPQL  402 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC-------------EEECTTTTTTCTTC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC-------------CcCCHHHhcCCccC
Confidence            5543332 23555555555555555555432  22222 45555554444332             23445556666677


Q ss_pred             CEEEcccccCCccchh-hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867          481 SHLILGHNNLEGEVLV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH  559 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (776)
                      +.|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..++                                 
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------  449 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP---------------------------------  449 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT---------------------------------
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC---------------------------------
Confidence            7777777766655443 366667777777777777666666555433                                 


Q ss_pred             ceeeeeecceEEEeccccccccceEEccCCcCCCC---ChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP---IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                          +|++|++++|++.+.   .+..+..+++|++|++++|++++..|..|.++++|+.|++++
T Consensus       450 --------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          450 --------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             --------------------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             --------------------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence                                677777777776642   234577777777777777777777777777777777777777


Q ss_pred             CccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC-------------------CCCC
Q 041867          637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-------------------PICR  697 (776)
Q Consensus       637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~-------------------~~c~  697 (776)
                      |++++..|+.+..++.| .|++++|++++..|..+..+++++.+++++|||.|+|+.                   ..|.
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~  588 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE  588 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEE
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeC
Confidence            77777777777777777 777777777777676667777777777777777777763                   1587


Q ss_pred             CCCCCCCCCCCCCC
Q 041867          698 SPATMSEASIGNER  711 (776)
Q Consensus       698 ~~~~~~~~~~~~~~  711 (776)
                      .|....|..+...+
T Consensus       589 ~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          589 NPPLLRGVRLSDVT  602 (606)
T ss_dssp             ESGGGTTCBGGGCC
T ss_pred             CchHhCCCeeeeee
Confidence            78777776555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.2e-54  Score=491.56  Aligned_cols=530  Identities=19%  Similarity=0.167  Sum_probs=333.0

Q ss_pred             CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867            7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY   86 (776)
Q Consensus         7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~   86 (776)
                      -++++.++++++. +|.. +  .+++++|++++|.+.+..+. .|.++++|++|++++|  .+.+..+..+. ++++|++
T Consensus        13 ~~~~~c~~~~l~~-ip~~-~--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~l~~i~~~~~~-~l~~L~~   84 (606)
T 3vq2_A           13 NITYQCMDQKLSK-VPDD-I--PSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRC--EIETIEDKAWH-GLHHLSN   84 (606)
T ss_dssp             TTEEECTTSCCSS-CCTT-S--CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred             CCceEccCCCccc-CCCC-C--CCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCC--cccccCHHHhh-chhhcCE
Confidence            4578888888774 4544 2  37899999999999855554 7899999999999999  55666666666 8999999


Q ss_pred             EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcc-cCCcccccCCCCCCEEe
Q 041867           87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTG-SISSSPLIHLTSIEKLY  165 (776)
Q Consensus        87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~  165 (776)
                      |++++|.+++    +.+..|+++++|++|++++|++++..+..|+++++|++|++++|.+++ .+|. .|.++++|++|+
T Consensus        85 L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~  159 (606)
T 3vq2_A           85 LILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVD  159 (606)
T ss_dssp             EECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEE
T ss_pred             eECCCCcccc----cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEE
Confidence            9999999876    544589999999999999999987777889999999999999999874 4566 889999999999


Q ss_pred             ccCCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEE
Q 041867          166 LSNNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETV  241 (776)
Q Consensus       166 L~~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  241 (776)
                      +++|.+++ ++...+..+.+|    ++|++++|.+....                             .......+|+.|
T Consensus       160 Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~-----------------------------~~~~~~~~L~~L  209 (606)
T 3vq2_A          160 LSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQ-----------------------------DQAFQGIKLHEL  209 (606)
T ss_dssp             CCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEEC-----------------------------TTTTTTCEEEEE
T ss_pred             ccCCccee-cChhhhhhhhccccccceeeccCCCcceeC-----------------------------cccccCceeeee
Confidence            99998874 333445544444    47888877765322                             122223367777


Q ss_pred             EcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcC------CCCCCCCC--CcCEEEc-eeccCcccCChhhhccCccc
Q 041867          242 ELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF------RLPIHSHK--RLGMLDI-SNNNFRGHIPIEIGDVLPSL  312 (776)
Q Consensus       242 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~------~~~~~~~~--~L~~L~l-s~n~l~~~~~~~~~~~l~~L  312 (776)
                      ++++|.+.+......+++++.++.+.+..+.+....      ...+..+.  .++.+++ ..+.+.+.+|. + ..+++|
T Consensus       210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~l~~L  287 (606)
T 3vq2_A          210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HCLANV  287 (606)
T ss_dssp             EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GGGTTC
T ss_pred             eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-c-ccCCCC
Confidence            777777664333333467777777776544332211      11111111  3455555 45556655554 3 336778


Q ss_pred             ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867          313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN  392 (776)
Q Consensus       313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~  392 (776)
                      +.+++++|.+. .+| .+..+++|++|++++|.+. .+|. +  .+++|+.|++++|+..             .+..+..
T Consensus       288 ~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~-------------~~~~~~~  348 (606)
T 3vq2_A          288 SAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGS-------------ISFKKVA  348 (606)
T ss_dssp             SEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSC-------------EECCCCC
T ss_pred             CEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C--CCCccceeeccCCcCc-------------cchhhcc
Confidence            88888877776 344 6777778888888888874 7773 2  5778888886666432             1124556


Q ss_pred             CCCCCEEeccCCccccC--CCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          393 LTWLQYIIMPNNHLEGP--IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                      +++|++|++++|.+++.  .+..+..+++|++|++++|.+.+.......+++|++|++++|++.             +..
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~  415 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK-------------RVT  415 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEE-------------STT
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccC-------------Ccc
Confidence            77888888888877755  366777777888888887777654322222455555544443332             222


Q ss_pred             C-hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          471 P-DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       471 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      + ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+ ..|..+..++                      
T Consensus       416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------------  473 (606)
T 3vq2_A          416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT----------------------  473 (606)
T ss_dssp             TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------
T ss_pred             ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC----------------------
Confidence            2 344555555555555555555555555555555555555555544 2344443322                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                     +|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++
T Consensus       474 -------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          474 -------------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             -------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             -------------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence                                           4555555555555555555555555555555555555555555555555


Q ss_pred             CCEEECcCCccCCcCCccccCCC-CCCEEecccccCcccC
Q 041867          629 VESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEI  667 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~  667 (776)
                      |++|++++|+++ .+|..+..++ +|+.|++++|++.|..
T Consensus       523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            555555555554 3333344443 3555555555555433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-53  Score=484.27  Aligned_cols=524  Identities=20%  Similarity=0.184  Sum_probs=400.9

Q ss_pred             CCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCc
Q 041867            5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSL   84 (776)
Q Consensus         5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L   84 (776)
                      +++++|+|++|.+++..+.+ +.++++|++|+|++|.+.+..|. +|.++++|++|++++|  .+.+..+..+. ++++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTAN--PLIFMAETALS-GPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTC--CCSEECTTTTS-SCTTC
T ss_pred             CcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChh-hccCccccCeeeCCCC--cccccChhhhc-ccccc
Confidence            47999999999999877777 99999999999999999866665 8999999999999999  66666677777 99999


Q ss_pred             cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC--
Q 041867           85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE--  162 (776)
Q Consensus        85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~--  162 (776)
                      ++|++++|.+++    +.+..++++++|++|++++|++++.....+..+++|++|++++|.++ .++...+..+++|+  
T Consensus       108 ~~L~L~~n~i~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l  182 (606)
T 3t6q_A          108 KHLFFIQTGISS----IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNL  182 (606)
T ss_dssp             CEEECTTSCCSC----GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSE
T ss_pred             cEeeccccCccc----CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhccccee
Confidence            999999999986    54557999999999999999999755455666999999999999998 55554899999999  


Q ss_pred             EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867          163 KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE  242 (776)
Q Consensus       163 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  242 (776)
                      +|++++|.+.+..+ . ......|++|++++|........    ......++.+.+.              .+..+... 
T Consensus       183 ~L~l~~n~l~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~--------------~~~~~~~~-  241 (606)
T 3t6q_A          183 SLNLNGNDIAGIEP-G-AFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLG--------------TFEDMDDE-  241 (606)
T ss_dssp             EEECTTCCCCEECT-T-TTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECC--------------CCTTSCCC-
T ss_pred             EEecCCCccCccCh-h-HhhhccccccccCCchhHHHHhh----hccccchhheech--------------hhcccccc-
Confidence            89999999985433 3 34456899999988762111000    0011122222220              01111111 


Q ss_pred             cCCCCCcccCChHHhhcCC--CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867          243 LSHIKMNGEFPTWLLENNT--KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN  320 (776)
Q Consensus       243 l~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n  320 (776)
                              .++...+.++.  +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+.. +++|++|++++|
T Consensus       242 --------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n  311 (606)
T 3t6q_A          242 --------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSAN  311 (606)
T ss_dssp             --------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTC
T ss_pred             --------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccC
Confidence                    12222223332  6778888888888777777888888888888888777 66665544 677777777777


Q ss_pred             cCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCC--CccccCCCCCCE
Q 041867          321 ALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKI--PRWLGNLTWLQY  398 (776)
Q Consensus       321 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~--~~~~~~l~~L~~  398 (776)
                      .+.+..|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.           +..  +..+..+++|++
T Consensus       312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~~~l~~L~~  380 (606)
T 3t6q_A          312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-----------TSDCCNLQLRNLSHLQS  380 (606)
T ss_dssp             CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-----------EEEESTTTTTTCTTCCE
T ss_pred             CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-----------cccCcchhcccCCCCCE
Confidence            7776666677777777777777777776677666666777777775555543           222  455667777777


Q ss_pred             EeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCc
Q 041867          399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS  478 (776)
Q Consensus       399 L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~  478 (776)
                      |++++|.+.+..+..|..+++|+.|++++|.+.+..                                   .+..+..++
T Consensus       381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------------------~~~~~~~l~  425 (606)
T 3t6q_A          381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----------------------------------AQSPFQNLH  425 (606)
T ss_dssp             EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----------------------------------TCCTTTTCT
T ss_pred             EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----------------------------------cchhhhCcc
Confidence            777777777666777777777777777777665322                                   223467788


Q ss_pred             cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCC---CCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867          479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI---PPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE  555 (776)
Q Consensus       479 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (776)
                      +|+.|++++|.+++..+..+..+++|++|++++|++.+..   +..+..                               
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-------------------------------  474 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-------------------------------  474 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------------------------
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------------------------
Confidence            9999999999998888888999999999999999987522   122333                               


Q ss_pred             ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECc
Q 041867          556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLS  635 (776)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  635 (776)
                                            +++|++|++++|.+++..|..|..+++|++|+|++|++++..|..|.++++| .|+++
T Consensus       475 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          475 ----------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             ----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             ----------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence                                  4489999999999998889999999999999999999999999999999999 99999


Q ss_pred             CCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          636 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       636 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      +|++++..|+.+..+++|+.|++++|++.|..+.
T Consensus       532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999999999986663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-51  Score=483.31  Aligned_cols=522  Identities=21%  Similarity=0.190  Sum_probs=373.5

Q ss_pred             CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867            4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS   83 (776)
Q Consensus         4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~   83 (776)
                      .++|++|+|++|.+++..+.+ +.++++|++|+|++|...+.++..+|.++++|++|++++|  .+.+..+..+. ++++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N--~l~~~~p~~~~-~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--KIYFLHPDAFQ-GLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC--CCCEECTTSSC-SCSS
T ss_pred             CCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC--cCcccCHhHcc-CCcc
Confidence            478999999999999877777 9999999999999997766775558999999999999999  66677777777 9999


Q ss_pred             ccEEEccCCCCCCCCCCcCC-cCCCCCCCCCEEEccCCccccccC-ccccCCCCCCEEeCCCCcCcccCCcccccCC--C
Q 041867           84 LKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGSNDLRGSLP-WCMTNLTSLRILDVSSNQLTGSISSSPLIHL--T  159 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~  159 (776)
                      |++|+|++|.+.+   .++. ..|.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+. .+..+  +
T Consensus        99 L~~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~l~~~  174 (844)
T 3j0a_A           99 LFELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGK  174 (844)
T ss_dssp             CCCEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHHHHHC
T ss_pred             cCEeeCcCCCCCc---ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-HcccccCC
Confidence            9999999999976   4443 248999999999999999987654 6799999999999999999855554 77777  8


Q ss_pred             CCCEEeccCCccccccCcccccCCC------CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCcccc
Q 041867          160 SIEKLYLSNNHFQIPISLEPLFNHS------RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLY  233 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~~~~~l~~l~------~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  233 (776)
                      +|+.|+++.|.+.+..+. .+..++      .|++|++++|.+..                            ..+..+.
T Consensus       175 ~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~----------------------------~~~~~~~  225 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTV----------------------------DITGNFS  225 (844)
T ss_dssp             SSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSST----------------------------TTTSGGG
T ss_pred             ccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCch----------------------------hHHHHHH
Confidence            999999999999865443 233333      37777777665542                            2222222


Q ss_pred             ---CCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCC--CCcCEEEceeccCcccCChhhhcc
Q 041867          234 ---HQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSH--KRLGMLDISNNNFRGHIPIEIGDV  308 (776)
Q Consensus       234 ---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~  308 (776)
                         ....++.+.++.+......                ..+.+.+.....|..+  ++|+.|++++|.+.+..+..+.. 
T Consensus       226 ~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-  288 (844)
T 3j0a_A          226 NAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-  288 (844)
T ss_dssp             GTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-
T ss_pred             hhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc-
Confidence               2357888888744332111                1111222222222222  44555555555555333333322 


Q ss_pred             CcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867          309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR  388 (776)
Q Consensus       309 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~  388 (776)
                      +++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+.|++++|.           +.+..+.
T Consensus       289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~-----------i~~~~~~  356 (844)
T 3j0a_A          289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNH-----------IAIIQDQ  356 (844)
T ss_dssp             CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCC-----------CCCCCSS
T ss_pred             CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCC-----------CCccChh
Confidence            555666666666665555556666666666666666665 4433444456666666644333           3344555


Q ss_pred             cccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccc
Q 041867          389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNG  468 (776)
Q Consensus       389 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~  468 (776)
                      .|..+++|++|++++|.+++.     ..+++|+.|++++|++......   ..+++.+++++|++.+.            
T Consensus       357 ~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------  416 (844)
T 3j0a_A          357 TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------  416 (844)
T ss_dssp             CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------
T ss_pred             hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccC------------
Confidence            666677777777777766632     2266677777777777643222   34566776666655421            


Q ss_pred             cCChhhccCccCCEEEcccccCCccchh-hhcCCCCCCEEeCCCCcccCCCC-----CCCcCCcccccccCCCCcchhhh
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLV-QLCELNQLQLLDLSNNNLHGPIP-----PCFDNTTLYESYSNSSSLDEQFE  542 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  542 (776)
                      ..+..+.++++|+.|++++|++++..+. .+..+++|+.|++++|.+....+     ..|..                  
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~------------------  478 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG------------------  478 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC------------------
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC------------------
Confidence            1223456889999999999999865443 45668999999999999974443     23333                  


Q ss_pred             cccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccc
Q 041867          543 IFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST  622 (776)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  622 (776)
                                                         +++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++++..
T Consensus       479 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  523 (844)
T 3j0a_A          479 -----------------------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND  523 (844)
T ss_dssp             -----------------------------------BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred             -----------------------------------cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence                                               348999999999999999999999999999999999999988888


Q ss_pred             cCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          623 FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       623 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      +.  ++|+.|+|++|++++..|+.|.   +|+.|++++|++.|.++.
T Consensus       524 ~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          524 LP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             hh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            77  8999999999999999987764   799999999999986653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-50  Score=460.88  Aligned_cols=514  Identities=19%  Similarity=0.204  Sum_probs=354.9

Q ss_pred             CCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCc
Q 041867            5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSL   84 (776)
Q Consensus         5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L   84 (776)
                      ++|++|+|++|++++..+.. +.++++|++|++++|.+.+..+. +|.++++|++|++++|  .+.+..+..+. ++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n--~l~~~~p~~~~-~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGN--PIQSFSPGSFS-GLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTC--CCCCCCTTSST-TCTTC
T ss_pred             CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCC--cccccChhhcC-CcccC
Confidence            67999999999998776666 99999999999999999865555 8999999999999999  56666677777 99999


Q ss_pred             cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCC-
Q 041867           85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIE-  162 (776)
Q Consensus        85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~-  162 (776)
                      ++|++++|.+.+    +++..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++ ++...+..+++|+ 
T Consensus       107 ~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          107 ENLVAVETKLAS----LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQ  181 (606)
T ss_dssp             CEEECTTSCCCC----SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTT
T ss_pred             CEEEccCCcccc----ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhcccc
Confidence            999999999986    555579999999999999999986 469999999999999999999984 4443677766655 


Q ss_pred             ---EEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867          163 ---KLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE  239 (776)
Q Consensus       163 ---~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  239 (776)
                         +|++++|.++ .++...+... +|++|++++|.+....                           .|..+..++.++
T Consensus       182 ~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~---------------------------~~~~~~~l~~L~  232 (606)
T 3vq2_A          182 VNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNI---------------------------MKTCLQNLAGLH  232 (606)
T ss_dssp             CCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHH---------------------------HHHHHHTTTTCE
T ss_pred             ccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhH---------------------------HHHHhccccccc
Confidence               8999999998 3444444444 8999999998775321                           122222333333


Q ss_pred             EEEcCCCCCcc-----cCChHHhhcCC--CCcEEEc-cCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcc
Q 041867          240 TVELSHIKMNG-----EFPTWLLENNT--KLRQLSL-VNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS  311 (776)
Q Consensus       240 ~L~l~~~~~~~-----~~~~~~~~~l~--~L~~L~L-~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~  311 (776)
                      .+++....+.+     .++...+.++.  .++.+.+ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+.. +++
T Consensus       233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~-~~~  308 (606)
T 3vq2_A          233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPK-HFK  308 (606)
T ss_dssp             EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCT-TCC
T ss_pred             cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccc-ccc
Confidence            33322111100     01111111111  2333333 33444444333 455555555555555554 333 2222 445


Q ss_pred             cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867          312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG  391 (776)
Q Consensus       312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~  391 (776)
                      |+.|++++|.+ +.+| .+ .+++|++|++++|...+.+   .+..+++|++|++++|.+.+.         +..+..+.
T Consensus       309 L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~---------~~~~~~~~  373 (606)
T 3vq2_A          309 WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFS---------GCCSYSDL  373 (606)
T ss_dssp             CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEE---------EECCHHHH
T ss_pred             CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCC---------cchhhhhc
Confidence            55555555555 2444 23 5555556665555433222   122455566665444443210         01244555


Q ss_pred             CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCcccccc
Q 041867          392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGS  469 (776)
Q Consensus       392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  469 (776)
                      .+++|++|++++|.+.+ .|..+..+++|+.|++++|.+.+..+ ..+. +++|++|++++|.+             .+.
T Consensus       374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~  439 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-------------KID  439 (606)
T ss_dssp             CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC-------------EEC
T ss_pred             cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC-------------Ccc
Confidence            56666666666666553 33555666666666666666655544 2332 55666664444433             235


Q ss_pred             CChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      .|..+.++++|+.|++++|.+++ ..+..+..+++|++|++++|++++..|..+..++                      
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------  497 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH----------------------  497 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc----------------------
Confidence            66778899999999999999997 4788899999999999999999998888887654                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCC-
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK-  627 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-  627 (776)
                                                     +|++|++++|++++..|..|..+++|++|+|++|+++.+ |..+..++ 
T Consensus       498 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~  545 (606)
T 3vq2_A          498 -------------------------------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPK  545 (606)
T ss_dssp             -------------------------------TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCT
T ss_pred             -------------------------------cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcc
Confidence                                           899999999999999999999999999999999999955 55588887 


Q ss_pred             CCCEEECcCCccCCcCC
Q 041867          628 HVESLDLSNNKLNGKIP  644 (776)
Q Consensus       628 ~L~~L~Ls~N~l~~~~~  644 (776)
                      +|+.|++++|++....+
T Consensus       546 ~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          546 SLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TCCEEECCSCCCCCSST
T ss_pred             cCcEEEccCCCcccCCc
Confidence            69999999999985444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-46  Score=423.97  Aligned_cols=276  Identities=20%  Similarity=0.238  Sum_probs=202.4

Q ss_pred             CCEEEccCC-cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCccc
Q 041867          336 LQILDLSNN-HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEF  414 (776)
Q Consensus       336 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~  414 (776)
                      ++.++++++ .+.+.++.. +..+++|+.|++++|.+.            .+|..+..+ +|++|++++|.+. .+|.  
T Consensus       259 l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~------------~l~~~~~~~-~L~~L~l~~n~~~-~l~~--  321 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIE------------RVKDFSYNF-GWQHLELVNCKFG-QFPT--  321 (570)
T ss_dssp             EEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEEC------------SCCBCCSCC-CCSEEEEESCBCS-SCCB--
T ss_pred             hhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccch------------hhhhhhccC-CccEEeeccCccc-ccCc--
Confidence            344555555 444333332 334666666665554433            355555556 6777777777666 3332  


Q ss_pred             CCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccc
Q 041867          415 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV  494 (776)
Q Consensus       415 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  494 (776)
                      ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+..           ..+..+.++++|+.|++++|.+.+..
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~  389 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG-----------CCSQSDFGTTSLKYLDLSFNGVITMS  389 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE-----------EEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred             ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc-----------cccccccccCccCEEECCCCcccccc
Confidence            3566677777777776654443 34667777766666544210           12567888899999999999888765


Q ss_pred             hhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867          495 LVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY  573 (776)
Q Consensus       495 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (776)
                      +. +..+++|++|++++|++.+..+ ..+..+                                                
T Consensus       390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------------------------------------------  420 (570)
T 2z63_A          390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL------------------------------------------------  420 (570)
T ss_dssp             EE-EETCTTCCEEECTTSEEESCTTSCTTTTC------------------------------------------------
T ss_pred             cc-ccccCCCCEEEccCCccccccchhhhhcC------------------------------------------------
Confidence            55 8889999999999998887655 344443                                                


Q ss_pred             ccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccc-ccCccccCCCCCCCEEECcCCccCCcCCccccCCCC
Q 041867          574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT  652 (776)
Q Consensus       574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  652 (776)
                           ++|++|++++|.+.+..|..+.++++|++|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++
T Consensus       421 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          421 -----RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             -----TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence                 37899999999998888888999999999999999987 467888899999999999999999888888999999


Q ss_pred             CCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867          653 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  694 (776)
Q Consensus       653 L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~  694 (776)
                      |+.|++++|++++..|..+..++.++.+++++||+.|+|+..
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999999999999888887888889999999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-46  Score=424.57  Aligned_cols=509  Identities=19%  Similarity=0.180  Sum_probs=342.7

Q ss_pred             CcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccE
Q 041867            7 LEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKY   86 (776)
Q Consensus         7 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~   86 (776)
                      .++.+.++.+++. +|.. +  .+++++|++++|.+.+..+. +|.++++|++|++++|  .+.+..+..+. ++++|++
T Consensus         9 ~~~~~c~~~~l~~-ip~~-l--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n--~i~~i~~~~~~-~l~~L~~   80 (570)
T 2z63_A            9 NITYQCMELNFYK-IPDN-L--PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLST   80 (570)
T ss_dssp             TTEEECCSSCCSS-CCSS-S--CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTC--CCCEECTTTTT-TCTTCCE
T ss_pred             CcEEEeCCCCccc-cCCC-c--cccccEEEccCCccCccChh-HhhCCCCceEEECCCC--cCCccCccccc-CchhCCE
Confidence            3456666666553 4433 2  35788888888888754443 7888888888888888  55555555555 7888888


Q ss_pred             EEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcc-cCCcccccCCCCCCEEe
Q 041867           87 LSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTG-SISSSPLIHLTSIEKLY  165 (776)
Q Consensus        87 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~i~~~~~~~l~~L~~L~  165 (776)
                      |++++|.+++    +++..|..+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|. .|.++++|++|+
T Consensus        81 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~  155 (570)
T 2z63_A           81 LILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLD  155 (570)
T ss_dssp             EECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEE
T ss_pred             EeCcCCcCCc----cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEe
Confidence            8888888865    555578888888888888888886655568888888888888888874 3455 788888888888


Q ss_pred             ccCCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEE
Q 041867          166 LSNNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETV  241 (776)
Q Consensus       166 L~~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  241 (776)
                      +++|.+++ ++...+..+++|    +++++++|.+....+..                            +.. .+|+.|
T Consensus       156 l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~----------------------------~~~-~~L~~L  205 (570)
T 2z63_A          156 LSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----------------------------FKE-IRLHKL  205 (570)
T ss_dssp             CTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT----------------------------TTT-CEEEEE
T ss_pred             CcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHH----------------------------hcc-CcceeE
Confidence            88888773 343456666666    67777777665432221                            111 145555


Q ss_pred             EcCCCCCccc-CChHHhhcCCCCcEEEccCCCCc------CcCCCCCCCCC--CcCEEEceec-cCcccCChhhhccCcc
Q 041867          242 ELSHIKMNGE-FPTWLLENNTKLRQLSLVNDSLG------GPFRLPIHSHK--RLGMLDISNN-NFRGHIPIEIGDVLPS  311 (776)
Q Consensus       242 ~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~~~~~--~L~~L~ls~n-~l~~~~~~~~~~~l~~  311 (776)
                      ++++|..... ++.. +.+++.++.+.+....+.      ......+..++  .++.++++++ .+.+..+..+.. +++
T Consensus       206 ~l~~n~~~~~~~~~~-~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~  283 (570)
T 2z63_A          206 TLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTN  283 (570)
T ss_dssp             EEESCCSCTTHHHHH-HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTT
T ss_pred             ecccccccccchhhh-hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCc
Confidence            5555433221 2222 245555544443321111      11111122222  2344555554 444444444433 556


Q ss_pred             cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867          312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG  391 (776)
Q Consensus       312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~  391 (776)
                      |+.+++++|.+. .+|..+..+ +|++|++++|.+. .+|..   .+++|+.|++++|.+.           +..+.  .
T Consensus       284 L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~-----------~~~~~--~  344 (570)
T 2z63_A          284 VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG-----------NAFSE--V  344 (570)
T ss_dssp             CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSC-----------CBCCC--C
T ss_pred             ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCccc-----------ccccc--c
Confidence            666666666655 345555555 6666666666665 55542   3556666664444332           12221  4


Q ss_pred             CCCCCCEEeccCCccccCC--CcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccccc
Q 041867          392 NLTWLQYIIMPNNHLEGPI--PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS  469 (776)
Q Consensus       392 ~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  469 (776)
                      .+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+                                     
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------------------------  387 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------------------------------------  387 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------------------------------------
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------------------------------------
Confidence            4556666666666655432  4445555556666555555442                                     


Q ss_pred             CChhhccCccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      .+..+.++++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..++                      
T Consensus       388 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------  445 (570)
T 2z63_A          388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS----------------------  445 (570)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT----------------------
T ss_pred             ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC----------------------
Confidence            22236778889999999998887655 5688899999999999999888887776644                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK  627 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  627 (776)
                                                     +|++|++++|.+. +.+|..+..+++|++|++++|++++..|..|..++
T Consensus       446 -------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          446 -------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             -------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -------------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence                                           8999999999987 56888999999999999999999999999999999


Q ss_pred             CCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      +|+.|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999998888999999999999999999998886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.4e-46  Score=425.20  Aligned_cols=550  Identities=19%  Similarity=0.169  Sum_probs=318.7

Q ss_pred             EEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEE
Q 041867            9 YLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLS   88 (776)
Q Consensus         9 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~   88 (776)
                      +.+-++-+++ .+|.. +  .+++++|+|++|.|++ ++..+|.++++|++|++++|  .+.+..+.++. ++++|++|+
T Consensus        35 ~~~c~~~~l~-~vP~~-l--p~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~-~L~~L~~L~  106 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQ-SLSHLSTLI  106 (635)
T ss_dssp             EEECTTSCCS-SCCSS-S--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTC--CCCEECTTTTT-TCTTCCEEE
T ss_pred             EEECCCCCcC-ccCCC-C--CcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCC--cCCCcChhHhc-CCCCCCEEE
Confidence            3444444444 23433 2  2578999999999974 44448999999999999999  55555555555 899999999


Q ss_pred             ccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCccc-CCcccccCCCCCCEEecc
Q 041867           89 LSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-ISSSPLIHLTSIEKLYLS  167 (776)
Q Consensus        89 L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~l~~L~~L~L~  167 (776)
                      |++|+++.    +++..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. +|. .+..+++|++|+++
T Consensus       107 Ls~N~l~~----l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          107 LTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLS  181 (635)
T ss_dssp             CTTCCCCE----ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECC
T ss_pred             ccCCcCCC----CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhccc
Confidence            99999875    6666788999999999999999877777899999999999999998742 344 77889999999999


Q ss_pred             CCccccccCcccccCCCCC----cEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867          168 NNHFQIPISLEPLFNHSRL----KTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL  243 (776)
Q Consensus       168 ~n~l~~~~~~~~l~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  243 (776)
                      +|.+++ +....+..+.++    ..++++.|.+.....                             .......++.+++
T Consensus       182 ~N~l~~-~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-----------------------------~~~~~~~~~~l~l  231 (635)
T 4g8a_A          182 SNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-----------------------------GAFKEIRLHKLTL  231 (635)
T ss_dssp             SSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECT-----------------------------TTTTTCEEEEEEE
T ss_pred             Cccccc-cccccccchhhhhhhhhhhhcccCcccccCc-----------------------------ccccchhhhhhhh
Confidence            998874 333344433332    356666665543211                             1122234455666


Q ss_pred             CCCCCcccCChHHhhcCCCCcEEEccCCCC------cCcCCCCCCCCCCcCEEEceeccCccc---CChhhhccCcccce
Q 041867          244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSL------GGPFRLPIHSHKRLGMLDISNNNFRGH---IPIEIGDVLPSLYL  314 (776)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~~~~~l~~L~~  314 (776)
                      .++......+...+.+++.++...+..+..      .......+.....+...++..+.....   .... .....+++.
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~  310 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSS  310 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSE
T ss_pred             hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhccccc
Confidence            665544344444445666666555533221      222223333444445454444332211   1111 112345555


Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      +.+..+.+...  ..+....+++.|++.+|.+. .++..   .+..|+.++++.|...             .+.....++
T Consensus       311 l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~-------------~~~~~~~l~  371 (635)
T 4g8a_A          311 FSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGG-------------NAFSEVDLP  371 (635)
T ss_dssp             EEEESCEEEEC--GGGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSC-------------CBCCCCBCT
T ss_pred             ccccccccccc--cccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCC-------------CCccccccc
Confidence            55555554432  22344455666666666554 33321   2445555554444322             112233456


Q ss_pred             CCCEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          395 WLQYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       395 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      +|+.+++++|.+..  ..+..+..+.+|+.++++.|........                                    
T Consensus       372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~------------------------------------  415 (635)
T 4g8a_A          372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN------------------------------------  415 (635)
T ss_dssp             TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC------------------------------------
T ss_pred             ccccchhhccccccccccccchhhhhhhhhhhcccccccccccc------------------------------------
Confidence            66666666665542  2334445555666666666555433332                                    


Q ss_pred             hhccCccCCEEEcccccCCccc-hhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEV-LVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                       +..+++|+.+++.+++..... ...|..+++++.+++++|.+.+..+..+..++                         
T Consensus       416 -~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-------------------------  469 (635)
T 4g8a_A          416 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-------------------------  469 (635)
T ss_dssp             -CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------------
T ss_pred             -ccccccccchhhhhccccccccccccccccccccccccccccccccccccccch-------------------------
Confidence             344455555555544433222 23345555555555555555544444443322                         


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCC-CCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI-GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE  630 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  630 (776)
                                                  .++.|++++|.+. +..|..|..+++|++|+|++|++++++|..|.++++|+
T Consensus       470 ----------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          470 ----------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             ----------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ----------------------------hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence                                        4555555555432 23455555666666666666666666666666666666


Q ss_pred             EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc-cccCcccccCCCCCCCCCC----------------
Q 041867          631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL----------------  693 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~~----------------  693 (776)
                      +|+|++|+|++..|..|..+++|++||+++|+|++..|..+..+ ++++.+++++|||.|+|++                
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~  601 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE  601 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSC
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCC
Confidence            66666666665555556666666666666666666555555554 3466666666666666643                


Q ss_pred             ---CCCCCCCCCCCCCCCCCC
Q 041867          694 ---PICRSPATMSEASIGNER  711 (776)
Q Consensus       694 ---~~c~~~~~~~~~~~~~~~  711 (776)
                         ..|..|...+|.++..++
T Consensus       602 ~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          602 VERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             GGGCBBCSSTTTTTCBGGGCC
T ss_pred             CCCceeCCchHHCCCEeeeec
Confidence               269999988888776664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-45  Score=415.20  Aligned_cols=493  Identities=18%  Similarity=0.195  Sum_probs=341.7

Q ss_pred             cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEE
Q 041867           85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL  164 (776)
Q Consensus        85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  164 (776)
                      .+.+.+++.++.    +|. .+.  ++|++|++++|++++..|..|.++++|++|++++|.++ .++...|.++++|++|
T Consensus         8 ~~c~~~~~~l~~----ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            8 GVCDGRSRSFTS----IPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             SEEECTTSCCSS----CCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred             ceEECCCCcccc----ccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEE
Confidence            334555555543    333 221  45666666666666555556666666666666666665 3333356666666666


Q ss_pred             eccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcC
Q 041867          165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS  244 (776)
Q Consensus       165 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  244 (776)
                      ++++|.+++ .+...+.++++|++|++++|.+...                           ..|..+..+++|++|+++
T Consensus        80 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A           80 DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             ECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEE
T ss_pred             ECCCCccCc-cCHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECC
Confidence            666666552 3333455666666666665554310                           123345566667777777


Q ss_pred             CCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCcc
Q 041867          245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG  324 (776)
Q Consensus       245 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  324 (776)
                      +|...+.+|...+.++++|++|++++|.+.+..+..+..+++|+.|+++.|.+. .+|..+...+++|+.|++++|.+.+
T Consensus       132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            766444555433467788888888888888777778888888888888888776 5555555557888888888888875


Q ss_pred             CC--C-ccCCCCCCCCEEEccCCcCCCcCchhhh---hcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE
Q 041867          325 SI--P-SSLGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY  398 (776)
Q Consensus       325 ~~--~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~  398 (776)
                      ..  + .....+++|+.|++++|.+.+..+..+.   ..+++|+.+++++|.+.+.-+     +.......+..+++|+.
T Consensus       211 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~~l~~L~~  285 (549)
T 2z81_A          211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-----FNPSESDVVSELGKVET  285 (549)
T ss_dssp             CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-----CCCCTTTCCCCCTTCCE
T ss_pred             ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-----ccccchhhhhhhccccc
Confidence            32  1 2234578899999999988755444332   356789999988877653111     11112234567888999


Q ss_pred             EeccCCccccC-----CCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          399 IIMPNNHLEGP-----IPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       399 L~l~~n~i~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      |++.++.+...     .+..+....+|+.|++++|.+...+...+. +++|++|++++|++.+..+.          .+.
T Consensus       286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~  355 (549)
T 2z81_A          286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK----------NSA  355 (549)
T ss_dssp             EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH----------HHT
T ss_pred             ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc----------chh
Confidence            99988876532     122233456899999999998755444443 78999998887776543221          023


Q ss_pred             hhccCccCCEEEcccccCCccch--hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVL--VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                      .+..+++|+.|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..                          
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------  408 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW--------------------------  408 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC--------------------------
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc--------------------------
Confidence            36788999999999999987653  56889999999999999998 45555544                          


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE  630 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  630 (776)
                                                 +++|++|++++|.+++ +|..+.  ++|++|++++|++++.+    ..+++|+
T Consensus       409 ---------------------------~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          409 ---------------------------PEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             ---------------------------CTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             ---------------------------cccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhc
Confidence                                       3489999999999984 344332  68999999999998753    5789999


Q ss_pred             EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      +|+|++|+++ .+|+ ...+++|+.|++++|++++..|.++..++.++.+++++|||.|+|+
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999998 5665 4678999999999999999888889999999999999999999997

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.2e-45  Score=409.92  Aligned_cols=445  Identities=17%  Similarity=0.145  Sum_probs=264.8

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCccc-CCcccccCC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-ISSSPLIHL  158 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-i~~~~~~~l  158 (776)
                      ++++|++|++++|.+++    +++..|..+++|++|+|++|++++..+..|+++++|++|++++|.+++. ++. .+.++
T Consensus        48 ~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l  122 (549)
T 2z81_A           48 ACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNL  122 (549)
T ss_dssp             SCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTC
T ss_pred             cCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhcc
Confidence            44444444444444433    2223444555555555555555544444455555555555555554421 122 34555


Q ss_pred             CCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCc
Q 041867          159 TSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDL  238 (776)
Q Consensus       159 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  238 (776)
                      ++|++|++++|.+.+.++...+.++++|++|++++|.+.+                            ..|..+..+++|
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------------~~~~~l~~l~~L  174 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN----------------------------YQSQSLKSIRDI  174 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE----------------------------ECTTTTTTCSEE
T ss_pred             CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc----------------------------cChhhhhccccC
Confidence            5555555555543333333344455555555554444321                            223344455556


Q ss_pred             CEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcC---CCCCCCCCCcCEEEceeccCcccCChhhh---ccCccc
Q 041867          239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPF---RLPIHSHKRLGMLDISNNNFRGHIPIEIG---DVLPSL  312 (776)
Q Consensus       239 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~~~L~~L~ls~n~l~~~~~~~~~---~~l~~L  312 (776)
                      +.|++++|.+. .+|.+++..+++|+.|++++|.+.+..   ......+++|+.|++++|.+.+..+..+.   ..+++|
T Consensus       175 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             ceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            66666655543 345554456677777777777766632   11234467788888888777654443332   224567


Q ss_pred             ceeecccccCccCC------CccCCCCCCCCEEEccCCcCCCcCc-----hhhhhcCCCCcEEEccCccccceEecCCCc
Q 041867          313 YLFNNSMNALDGSI------PSSLGNMKFLQILDLSNNHLTGEIP-----EHLAVGCVNLQSLALSNNNLQEGLYLNNNS  381 (776)
Q Consensus       313 ~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~  381 (776)
                      +.+++++|.+.+..      ...+..+++|+.|++.++.+. ...     ...+...++|+.|++++|.+.         
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~l~~~~~~~~~L~~L~l~~n~l~---------  323 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYSLLEKVKRITVENSKVF---------  323 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGGGSCCCCHHHHHSTTCCEEEEESSCCC---------
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccc-hhhhcccchhhhhhcccceEEEeccCccc---------
Confidence            77777777665321      123345566666666666554 111     011122345555553333322         


Q ss_pred             CCCCCCccc-cCCCCCCEEeccCCccccCCC---cccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCccc
Q 041867          382 LSGKIPRWL-GNLTWLQYIIMPNNHLEGPIP---VEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  457 (776)
Q Consensus       382 l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  457 (776)
                         .+|..+ ..+++|++|++++|.+.+..|   ..+..+++|++|++++|++.+..                       
T Consensus       324 ---~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------  377 (549)
T 2z81_A          324 ---LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ-----------------------  377 (549)
T ss_dssp             ---CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH-----------------------
T ss_pred             ---cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc-----------------------
Confidence               233332 345555555555555554332   12444555555555555443210                       


Q ss_pred             ccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCc
Q 041867          458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSL  537 (776)
Q Consensus       458 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~  537 (776)
                                 ..+..+..+++|+.|++++|+++ ..|..+..+++|++|++++|++.+... .+               
T Consensus       378 -----------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~---------------  429 (549)
T 2z81_A          378 -----------KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI---------------  429 (549)
T ss_dssp             -----------HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS---------------
T ss_pred             -----------cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh---------------
Confidence                       01134778899999999999998 456678889999999999999874322 11               


Q ss_pred             chhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccc
Q 041867          538 DEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIG  617 (776)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  617 (776)
                                                              +++|++|++++|++++..    ..+++|++|+|++|+++.
T Consensus       430 ----------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~  465 (549)
T 2z81_A          430 ----------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT  465 (549)
T ss_dssp             ----------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS
T ss_pred             ----------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc
Confidence                                                    237999999999998653    578999999999999996


Q ss_pred             cCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       618 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      ++ . ...+++|+.|+|++|++++.+|+.+..+++|+.|++++|++.|.+|
T Consensus       466 ip-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          466 LP-D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CC-C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CC-C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            54 3 4568999999999999999999999999999999999999998777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=404.31  Aligned_cols=457  Identities=19%  Similarity=0.142  Sum_probs=283.6

Q ss_pred             EEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEe
Q 041867           86 YLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY  165 (776)
Q Consensus        86 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  165 (776)
                      +|++++|.++.    +|. .+.  ++|++|++++|++++..|..|.++++|++|++++|++++..|. .|.++++|++|+
T Consensus         4 ~l~ls~n~l~~----ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~   75 (520)
T 2z7x_B            4 LVDRSKNGLIH----VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLD   75 (520)
T ss_dssp             EEECTTSCCSS----CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred             eEecCCCCccc----ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence            45555555543    332 222  4555555555555554445555555555555555555522232 555555555555


Q ss_pred             ccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCC
Q 041867          166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSH  245 (776)
Q Consensus       166 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  245 (776)
                      +++|.++ .++..   .+++|++|++++|.+..                           ..+|..++.+++|+.|++++
T Consensus        76 Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~---------------------------~~~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B           76 LSHNKLV-KISCH---PTVNLKHLDLSFNAFDA---------------------------LPICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             CCSSCCC-EEECC---CCCCCSEEECCSSCCSS---------------------------CCCCGGGGGCTTCCEEEEEE
T ss_pred             cCCCcee-ecCcc---ccCCccEEeccCCcccc---------------------------ccchhhhccCCcceEEEecC
Confidence            5555554 22221   45555555555544321                           12344555556666666666


Q ss_pred             CCCcccCChHHhhcCCCC--cEEEccCCCC--cCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeecccc
Q 041867          246 IKMNGEFPTWLLENNTKL--RQLSLVNDSL--GGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMN  320 (776)
Q Consensus       246 ~~~~~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n  320 (776)
                      |.+.+.   . +..+++|  +.|++++|.+  .+..+..+..+. +...+++++|.+.+.++......+++|+.++++.|
T Consensus       125 n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          125 THLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             SSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             cccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            655431   1 2455555  6666666666  555555554444 23345666777666666555555777777777777


Q ss_pred             c-------CccCCCccCCCCCCCCEEEccCCcCCCcCchhhhh--cCCCCcEEEccCccccceEecCCCcCCCCCCccc-
Q 041867          321 A-------LDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV--GCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-  390 (776)
Q Consensus       321 ~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-  390 (776)
                      .       +.+.++ .+..+++|+.|++++|.+.+..+.....  ..++|++|++++|+           +.+.+|..+ 
T Consensus       201 ~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----------l~~~~p~~~~  268 (520)
T 2z7x_B          201 LEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-----------LQGQLDFRDF  268 (520)
T ss_dssp             CSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-----------EESCCCCCCC
T ss_pred             ccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-----------ccCccccchh
Confidence            5       444444 6777888888888888776433332221  24588888855554           445567666 


Q ss_pred             ----cCCCCCCEEeccCCccccCCCcccCCC---CCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCC
Q 041867          391 ----GNLTWLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSY  463 (776)
Q Consensus       391 ----~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  463 (776)
                          +.+++|+.+++++|.+ ......+..+   .+|+.|++++|.+..... ...+++|++|++++|++.         
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~---------  337 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLT---------  337 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC---------
T ss_pred             hcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccC---------
Confidence                7888888888888888 2332444444   678888888888764331 123667888866555443         


Q ss_pred             ccccccCChhhccCccCCEEEcccccCCc--cchhhhcCCCCCCEEeCCCCcccCCCCC-CCcCCcccccccCCCCcchh
Q 041867          464 NRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYSNSSSLDEQ  540 (776)
Q Consensus       464 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~  540 (776)
                          +..|.++..+++|+.|++++|++++  ..|..+..+++|++|++++|++.+.+|. .+..                
T Consensus       338 ----~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----------------  397 (520)
T 2z7x_B          338 ----DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----------------  397 (520)
T ss_dssp             ----TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----------------
T ss_pred             ----hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----------------
Confidence                4566677788888888888888886  4456688888888888888888763333 3433                


Q ss_pred             hhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc
Q 041867          541 FEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP  620 (776)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  620 (776)
                                                           +++|++|++++|++++..|..+.  ++|+.|++++|+++. +|
T Consensus       398 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip  437 (520)
T 2z7x_B          398 -------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IP  437 (520)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CC
T ss_pred             -------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cc
Confidence                                                 23788888888888766665554  678888888888874 44


Q ss_pred             cccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          621 STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       621 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      ..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            555578888888888888874443447778888888888888876544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2e-45  Score=417.79  Aligned_cols=456  Identities=19%  Similarity=0.222  Sum_probs=264.8

Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCc------c------cCCcccccCCCCCCEEeccCCccccccCc
Q 041867          110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLT------G------SISSSPLIHLTSIEKLYLSNNHFQIPISL  177 (776)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  177 (776)
                      .+++.|+|++|.+++.+|.+++++++|++|+|++|.+.      +      .+|.. .  +..|+ ++++.|.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~-~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE-Q--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH-H--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHH-H--HHHHH-hhHHHhhhccCchh
Confidence            35777777777777777777777777777777777552      1      12220 1  23344 55555555443332


Q ss_pred             ccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccC-CCCCCcccCccccCCCCcCEEEcCCCCCccc-----
Q 041867          178 EPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSS-GYEDGVTFPKFLYHQHDLETVELSHIKMNGE-----  251 (776)
Q Consensus       178 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----  251 (776)
                      .....+..+..+++....+..         .....++.+.+.. .+.+.+ +|..++++++|++|++++|.+++.     
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~  226 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA  226 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred             hHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc
Confidence            111111111111111111100         0011233333322 344555 788888888888888888888875     


Q ss_pred             ------------CChHHhh--cCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceecc-Ccc-cCChhhhcc-----Cc
Q 041867          252 ------------FPTWLLE--NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN-FRG-HIPIEIGDV-----LP  310 (776)
Q Consensus       252 ------------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~-l~~-~~~~~~~~~-----l~  310 (776)
                                  +|..+ .  ++++|+.|++++|.+.+..|..+..+++|+.|++++|+ +++ .+|..+...     ++
T Consensus       227 ~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             CSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             ccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence                        77665 4  78888888888888888777778888888888888887 776 677666541     26


Q ss_pred             ccceeecccccCccCCCc--cCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867          311 SLYLFNNSMNALDGSIPS--SLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR  388 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~  388 (776)
                      +|++|++++|.++ .+|.  .+..+++|++|++++|.+.|.+|  .+..+++|+.|++++|++.            .+|.
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~------------~lp~  370 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT------------EIPA  370 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE------------ECCT
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc------------cccH
Confidence            7777777777777 5666  67777777777777777776666  3445667777775555443            4556


Q ss_pred             cccCCCC-CCEEeccCCccccCCCcccCCCC--CCcEEEccccccCCCCCCCCC--------CCcccEEEcCCcccCccc
Q 041867          389 WLGNLTW-LQYIIMPNNHLEGPIPVEFCQLD--LLQILDISDNNISGSLPSCFH--------PLSIKQVHLSKNMLHGQL  457 (776)
Q Consensus       389 ~~~~l~~-L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~ls~n~l~~~~~~~~~--------~~~L~~L~l~~n~l~~~~  457 (776)
                      .+..+++ |++|++++|.++ .+|..+..+.  +|+.|++++|.+.+..|..+.        ..+|++|++++|++.   
T Consensus       371 ~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---  446 (636)
T 4eco_A          371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---  446 (636)
T ss_dssp             TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---
T ss_pred             hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC---
Confidence            6666776 777777777776 5555555543  677777777777665544332        335555544444332   


Q ss_pred             ccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCC-------CCCEEeCCCCcccCCCCCCCc--CCccc
Q 041867          458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELN-------QLQLLDLSNNNLHGPIPPCFD--NTTLY  528 (776)
Q Consensus       458 ~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~Ls~n~l~~~~~~~~~--~~~~~  528 (776)
                                ...+..+..+++|+.|++++|+++......+....       +|+.|++++|+++ .+|..+.  .    
T Consensus       447 ----------~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~----  511 (636)
T 4eco_A          447 ----------KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT----  511 (636)
T ss_dssp             ----------SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT----
T ss_pred             ----------cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc----
Confidence                      22233344456666666666666533333333222       5666666666655 2333222  2    


Q ss_pred             ccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCee
Q 041867          529 ESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL  608 (776)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  608 (776)
                                                                       +++|+.|+|++|++++ +|..+..+++|+.|
T Consensus       512 -------------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          512 -------------------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             -------------------------------------------------CCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence                                                             2356666666666664 55555566666666


Q ss_pred             ec------ccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867          609 NL------SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  667 (776)
Q Consensus       609 ~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  667 (776)
                      +|      ++|++.+.+|..+..+++|++|+|++|+++ .+|..+.  ++|+.|++++|++.+..
T Consensus       542 ~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             ECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             ECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence            66      345555555556666666666666666663 4454433  45666666666555433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-43  Score=391.55  Aligned_cols=460  Identities=18%  Similarity=0.198  Sum_probs=308.7

Q ss_pred             cEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEE
Q 041867            8 EYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYL   87 (776)
Q Consensus         8 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L   87 (776)
                      ++|++++|+++. +|.. +.  ++|++|++++|.+.+..+. +|.++++|++|++++|  .+.+..+..+. ++++|++|
T Consensus         3 ~~l~ls~n~l~~-ip~~-~~--~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n--~l~~~~~~~~~-~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKD-LS--QKTTILNISQNYISELWTS-DILSLSKLRILIISHN--RIQYLDISVFK-FNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSS-CCCS-CC--TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSS--CCCEEEGGGGT-TCTTCCEE
T ss_pred             ceEecCCCCccc-cccc-cc--ccccEEECCCCcccccChh-hccccccccEEecCCC--ccCCcChHHhh-cccCCCEE
Confidence            456777777663 4443 22  6677777777776644333 5666677777777776  44454455555 66667777


Q ss_pred             EccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc-ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCC--CEE
Q 041867           88 SLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG-SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI--EKL  164 (776)
Q Consensus        88 ~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L  164 (776)
                      ++++|.++.    ++..   .+++|++|+|++|++++ ..|..|+++++|++|++++|.+++    ..+..+++|  ++|
T Consensus        75 ~Ls~N~l~~----lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           75 DLSHNKLVK----ISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKV  143 (520)
T ss_dssp             ECCSSCCCE----EECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEE
T ss_pred             ecCCCceee----cCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEE
Confidence            776666653    4432   56666666666666665 245666666666666666666653    134555555  666


Q ss_pred             eccCCcc--ccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEE
Q 041867          165 YLSNNHF--QIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVE  242 (776)
Q Consensus       165 ~L~~n~l--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  242 (776)
                      ++++|.+  .+..+ ..+..+..                                                   +...++
T Consensus       144 ~l~~n~l~~~~~~~-~~l~~l~~---------------------------------------------------~~l~l~  171 (520)
T 2z7x_B          144 LLVLGETYGEKEDP-EGLQDFNT---------------------------------------------------ESLHIV  171 (520)
T ss_dssp             EEEECTTTTSSCCT-TTTTTCCE---------------------------------------------------EEEEEE
T ss_pred             Eeeccccccccccc-cccccccc---------------------------------------------------ceEEEE
Confidence            6666655  32221 11222211                                                   111223


Q ss_pred             cCCCCCcccCChHHhhcCCCCcEEEccCCC-------CcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc--cCcccc
Q 041867          243 LSHIKMNGEFPTWLLENNTKLRQLSLVNDS-------LGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD--VLPSLY  313 (776)
Q Consensus       243 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~l~~L~  313 (776)
                      +++|.+.+.++...+.++++|+.+++++|.       +.+..+ .+..+++|+.|++++|.+.+..+..+..  ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence            334433333333333444555555555443       222222 4566777888888877776433322221  135889


Q ss_pred             eeecccccCccCCCccC-----CCCCCCCEEEccCCcCCCcCchhhhhcC---CCCcEEEccCccccceEecCCCcCCCC
Q 041867          314 LFNNSMNALDGSIPSSL-----GNMKFLQILDLSNNHLTGEIPEHLAVGC---VNLQSLALSNNNLQEGLYLNNNSLSGK  385 (776)
Q Consensus       314 ~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~ls~n~l~~~l~l~~n~l~~~  385 (776)
                      .|++++|.+.+.+|..+     ..+++|+.+++++|.+  .+|...+..+   .+|+.|++++|++.           ..
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-----------~~  317 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-----------HM  317 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-----------CC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-----------cc
Confidence            99999999888888887     8899999999999998  6673322223   57999997777653           11


Q ss_pred             CCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcc
Q 041867          386 IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNR  465 (776)
Q Consensus       386 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~  465 (776)
                      .  .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.                                
T Consensus       318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--------------------------------  363 (520)
T 2z7x_B          318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL--------------------------------  363 (520)
T ss_dssp             C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH--------------------------------
T ss_pred             c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc--------------------------------
Confidence            1  125788899999999999888888888888999998888887631                                


Q ss_pred             ccccCChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867          466 LNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF  544 (776)
Q Consensus       466 l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (776)
                        ...|..+..+++|+.|++++|.+++ .....+..+++|++|++++|++++..|..+.                     
T Consensus       364 --~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---------------------  420 (520)
T 2z7x_B          364 --SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---------------------  420 (520)
T ss_dssp             --HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---------------------
T ss_pred             --ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---------------------
Confidence              0235668889999999999999998 4444588899999999999999865554332                     


Q ss_pred             cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867          545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS  624 (776)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  624 (776)
                                                        ++|+.|++++|+++ .+|..+..+++|++|++++|+++++++..|.
T Consensus       421 ----------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~  465 (520)
T 2z7x_B          421 ----------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD  465 (520)
T ss_dssp             ----------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence                                              27999999999999 6777777999999999999999977666699


Q ss_pred             CCCCCCEEECcCCccCCcCC
Q 041867          625 NLKHVESLDLSNNKLNGKIP  644 (776)
Q Consensus       625 ~l~~L~~L~Ls~N~l~~~~~  644 (776)
                      .+++|++|++++|++++..+
T Consensus       466 ~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          466 RLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcccEEECcCCCCcccCC
Confidence            99999999999999986443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.9e-43  Score=402.70  Aligned_cols=382  Identities=20%  Similarity=0.202  Sum_probs=297.1

Q ss_pred             CCCCcccCccccCCCCcCEEEcCCCCCcc-----------------cCChHH-hhcCCCCcEEEccCCCCcCcCCCCCCC
Q 041867          222 YEDGVTFPKFLYHQHDLETVELSHIKMNG-----------------EFPTWL-LENNTKLRQLSLVNDSLGGPFRLPIHS  283 (776)
Q Consensus       222 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~  283 (776)
                      +.+.+ +|..++++++|+.|++++|.+++                 .+|..+ |.++++|+.|++++|.+.+..|..+..
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            34445 88889999999999999999987                 377775 348899999999999988888888999


Q ss_pred             CCCcCEEEceecc-Ccc-cCChhhhc------cCcccceeecccccCccCCCc--cCCCCCCCCEEEccCCcCCCcCchh
Q 041867          284 HKRLGMLDISNNN-FRG-HIPIEIGD------VLPSLYLFNNSMNALDGSIPS--SLGNMKFLQILDLSNNHLTGEIPEH  353 (776)
Q Consensus       284 ~~~L~~L~ls~n~-l~~-~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  353 (776)
                      +++|+.|++++|+ +++ .+|..+..      .+++|+.|++++|.+. .+|.  .+..+++|++|++++|.+. .+|  
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--  589 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--  589 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence            9999999999998 877 67776554      1348899999999888 7777  7888899999999999888 888  


Q ss_pred             hhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCC-CCEEeccCCccccCCCcccCCCCC--CcEEEcccccc
Q 041867          354 LAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW-LQYIIMPNNHLEGPIPVEFCQLDL--LQILDISDNNI  430 (776)
Q Consensus       354 ~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~ls~n~l  430 (776)
                      .+..+++|+.|++++|++           . .+|..+..+++ |++|++++|.+. .+|..+..+..  |+.|++++|.+
T Consensus       590 ~~~~L~~L~~L~Ls~N~l-----------~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQI-----------E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             CCCTTSEESEEECCSSCC-----------S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             hhcCCCcceEEECcCCcc-----------c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence            455688888888655554           3 57777888888 999999999888 66777776654  89999999988


Q ss_pred             CCCCCCCC------CCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCC---
Q 041867          431 SGSLPSCF------HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL---  501 (776)
Q Consensus       431 ~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---  501 (776)
                      .+..+...      ...+|++|++++|++.             ...+..+..+++|+.|+|++|+++......+...   
T Consensus       657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~  723 (876)
T 4ecn_A          657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN  723 (876)
T ss_dssp             TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred             CCccccchhhhccccCCCcCEEEccCCcCC-------------ccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence            87655433      2457888877666554             2333345578899999999998885444444332   


Q ss_pred             ----CCCCEEeCCCCcccCCCCCCCc--CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867          502 ----NQLQLLDLSNNNLHGPIPPCFD--NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG  575 (776)
Q Consensus       502 ----~~L~~L~Ls~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (776)
                          ++|+.|+|++|+++ .+|..+.  .                                                   
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~---------------------------------------------------  751 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATT---------------------------------------------------  751 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTT---------------------------------------------------
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhcc---------------------------------------------------
Confidence                38999999999888 4454443  3                                                   


Q ss_pred             ccccccceEEccCCcCCCCChhhhccCccCCeeeccc------ccccccCccccCCCCCCCEEECcCCccCCcCCccccC
Q 041867          576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSH------NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  649 (776)
Q Consensus       576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  649 (776)
                        +++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|..+++|+.|+|++|++ +.+|..+. 
T Consensus       752 --l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-  826 (876)
T 4ecn_A          752 --LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-  826 (876)
T ss_dssp             --CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred             --CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-
Confidence              3489999999999986 688888999999999976      778888888999999999999999999 57777665 


Q ss_pred             CCCCCEEecccccCcccCCCccccccccCcccccCCCCCC--CCC
Q 041867          650 LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC--GLP  692 (776)
Q Consensus       650 l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c--~~~  692 (776)
                       ++|+.|||++|++....+..+..........+.+|++.+  +|+
T Consensus       827 -~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          827 -PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             -SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             -CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence             689999999999987777766666666677777776655  775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.1e-44  Score=404.63  Aligned_cols=370  Identities=18%  Similarity=0.204  Sum_probs=284.2

Q ss_pred             CCccccccCccccCCCCCCEEeCCCCcCccc-----------------CCccccc--CCCCCCEEeccCCccccccCccc
Q 041867          119 SNDLRGSLPWCMTNLTSLRILDVSSNQLTGS-----------------ISSSPLI--HLTSIEKLYLSNNHFQIPISLEP  179 (776)
Q Consensus       119 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~  179 (776)
                      .|++++ +|..|+++++|++|+|++|.+++.                 +|. .+.  ++++|++|++++|.+.+.+| ..
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p-~~  268 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLP-TF  268 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCC-TT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccCh-HH
Confidence            355665 566666666666666666666643                 555 555  66666666666666665555 44


Q ss_pred             ccCCCCCcEEEcccCc-ccc-cccccccCC---CCCcccceEeccCCCCCCcccCc--cccCCCCcCEEEcCCCCCcccC
Q 041867          180 LFNHSRLKTFYADNNE-LNA-EITQSHSLT---APNFQLSRLSLSSGYEDGVTFPK--FLYHQHDLETVELSHIKMNGEF  252 (776)
Q Consensus       180 l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~  252 (776)
                      +.++++|++|++++|. +++ ..+..+...   ....+|+.|++ .++.+. .+|.  .+..+++|+.|++++|.+.+.+
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L-~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI-GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC-CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC-CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence            6666666666666665 544 333221110   11136667777 555555 6787  8899999999999999999888


Q ss_pred             ChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCC-cCEEEceeccCcccCChhhhcc-CcccceeecccccCccCCCccC
Q 041867          253 PTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKR-LGMLDISNNNFRGHIPIEIGDV-LPSLYLFNNSMNALDGSIPSSL  330 (776)
Q Consensus       253 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~  330 (776)
                      | . +..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.++ .+|..+... +++|+.|++++|.+.+..|..+
T Consensus       347 p-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  422 (636)
T 4eco_A          347 P-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF  422 (636)
T ss_dssp             C-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred             h-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence            8 4 478999999999999998 56677888998 999999999998 778765431 3489999999999999888888


Q ss_pred             C-------CCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc-------CCCCC
Q 041867          331 G-------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG-------NLTWL  396 (776)
Q Consensus       331 ~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~-------~l~~L  396 (776)
                      .       .+++|++|++++|.++ .+|..++..+++|+.|++++|++.           ...+..+.       ++++|
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-----------~i~~~~~~~~~~~~~~l~~L  490 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-----------EIPKNSLKDENENFKNTYLL  490 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-----------BCCSSSSEETTEECTTGGGC
T ss_pred             cccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-----------CcCHHHhccccccccccCCc
Confidence            8       7889999999999999 899999988999999997777654           22223333       33499


Q ss_pred             CEEeccCCccccCCCcccC--CCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          397 QYIIMPNNHLEGPIPVEFC--QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       397 ~~L~l~~n~i~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      ++|++++|.++ .+|..+.  .+++|+.|++++|++.+.+.....+++|++|++++|+       ++++|.+.+.+|.++
T Consensus       491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~-------~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR-------DAQGNRTLREWPEGI  562 (636)
T ss_dssp             CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB-------CTTCCBCCCCCCTTG
T ss_pred             cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc-------ccccCcccccChHHH
Confidence            99999999999 6777776  9999999999999999854444559999999999987       678899999999999


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP  520 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  520 (776)
                      ..+++|+.|+|++|+++ .+|..+.  ++|+.|++++|++......
T Consensus       563 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~  605 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS  605 (636)
T ss_dssp             GGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred             hcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence            99999999999999995 5565554  8999999999998755443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.1e-42  Score=384.94  Aligned_cols=440  Identities=20%  Similarity=0.170  Sum_probs=230.6

Q ss_pred             CCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEE
Q 041867          110 VHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF  189 (776)
Q Consensus       110 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  189 (776)
                      ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...|.++++|++|++++|.++ .++..   .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            34555555555555444444555555555555555554 222224455555555555555444 22221   34444444


Q ss_pred             EcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCC--cEEE
Q 041867          190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKL--RQLS  267 (776)
Q Consensus       190 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~  267 (776)
                      ++++|.+..                           ...|..+..+++|+.|++++|.+.+..    +..+++|  +.|+
T Consensus       127 ~Ls~N~l~~---------------------------l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~  175 (562)
T 3a79_B          127 DLSFNDFDV---------------------------LPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCIL  175 (562)
T ss_dssp             ECCSSCCSB---------------------------CCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEE
T ss_pred             ECCCCCccc---------------------------cCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEE
Confidence            444443321                           012233444445555555555444311    1233333  5555


Q ss_pred             ccCCCC--cCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeecccccCc----cCCCccCCCCCCCCEEE
Q 041867          268 LVNDSL--GGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD----GSIPSSLGNMKFLQILD  340 (776)
Q Consensus       268 L~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~  340 (776)
                      +++|.+  .+..+..+..+. +.-.+++++|.+.+.++......+++|+.++++.|...    ......+..+++|+.++
T Consensus       176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~  255 (562)
T 3a79_B          176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT  255 (562)
T ss_dssp             EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred             eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence            555555  444444443332 11134555555555444444444556666666665311    01112345556666666


Q ss_pred             ccCCcCCCcCchhhh--hcCCCCcEEEccCccccceEecCCCcCCCCCCccc-----cCCCCCCEEeccCCccccCCC-c
Q 041867          341 LSNNHLTGEIPEHLA--VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-----GNLTWLQYIIMPNNHLEGPIP-V  412 (776)
Q Consensus       341 l~~n~l~~~~~~~~~--~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~~-~  412 (776)
                      ++++.+.+.......  ...++|++|++++|.           +++.+|..+     ..++.|+.++++.+.+  ..| .
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-----------l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~  322 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-----------ITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKE  322 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE-----------ECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHH
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccE-----------eeccccchhhhcccccchheehhhccccee--ecChh
Confidence            666655422111111  123466666644433           334455544     5555666666665555  222 2


Q ss_pred             ccCC---CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccccc
Q 041867          413 EFCQ---LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNN  489 (776)
Q Consensus       413 ~~~~---l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  489 (776)
                      .+..   ..+|+.|++++|.+..... ...+++|++|++++|++             ++..|.++.++++|+.|++++|+
T Consensus       323 ~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l-------------~~~~~~~~~~l~~L~~L~L~~N~  388 (562)
T 3a79_B          323 ALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVF-------------TDSVFQGCSTLKRLQTLILQRNG  388 (562)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCC-------------CTTTTTTCCSCSSCCEEECCSSC
T ss_pred             hhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCcc-------------ccchhhhhcccCCCCEEECCCCC
Confidence            2221   2457777777777653221 02255666665554443             33456666777777777777777


Q ss_pred             CCccc--hhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeee
Q 041867          490 LEGEV--LVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT  566 (776)
Q Consensus       490 l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (776)
                      +++..  +..+..+++|++|++++|++.+..| ..+..+                                         
T Consensus       389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l-----------------------------------------  427 (562)
T 3a79_B          389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----------------------------------------  427 (562)
T ss_dssp             CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC-----------------------------------------
T ss_pred             cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc-----------------------------------------
Confidence            77532  4556777777777777777776333 234332                                         


Q ss_pred             cceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCcc
Q 041867          567 KNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQ  646 (776)
Q Consensus       567 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  646 (776)
                                  ++|++|++++|++++..|..+.  ++|+.|+|++|+++.+ |..+..+++|++|++++|+++...+..
T Consensus       428 ------------~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~  492 (562)
T 3a79_B          428 ------------ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGV  492 (562)
T ss_dssp             ------------TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred             ------------ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence                        3677777777777655554433  5777777777777744 333447777777777777777433333


Q ss_pred             ccCCCCCCEEecccccCcccCC
Q 041867          647 LVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       647 l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      +..+++|+.|++++|++.|.+|
T Consensus       493 ~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          493 FDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTCTTCCCEECCSCCBCCCHH
T ss_pred             HhcCCCCCEEEecCCCcCCCcc
Confidence            6777777777777777776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-41  Score=391.90  Aligned_cols=325  Identities=18%  Similarity=0.182  Sum_probs=167.7

Q ss_pred             CCCcEEECCCCCCCCccchhccCCCCCCCEEeC-CCCcCccccCCCcCCC---CCCC--cEEeC-------C-CCccccC
Q 041867            5 TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSI-SYCEVNGVVHGQGFPH---FKSL--EHLGM-------M-STRIALN   70 (776)
Q Consensus         5 ~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~L-s~n~~~~~~~~~~~~~---l~~L--~~L~l-------~-~~~i~~~   70 (776)
                      .+++.|+|+++.+.+.+|.+ ++++++|++|+| ++|.+.+..+......   +...  +.+..       . .....+.
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            35777888888887777776 778888888888 6776654422110000   0000  00000       0 0000001


Q ss_pred             cchhHHHHh----------cCCCccEEEccC--CCCCCCCCCcCCcCCCCCCCCCEEEccCCcccc--------------
Q 041867           71 TNFLQVISE----------SMPSLKYLSLSY--STLGTNSSRILDRGLCSPVHLQELYIGSNDLRG--------------  124 (776)
Q Consensus        71 ~~~~~~~~~----------~l~~L~~L~L~~--n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------------  124 (776)
                      ......+..          ....++.+.+..  |.+++    +|. .|+++++|++|+|++|++++              
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~----IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~  476 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF----ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY  476 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE----ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc----hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccc
Confidence            111111110          111222222222  34432    443 57777777777777777776              


Q ss_pred             ---ccCcccc--CCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCc-ccc-ccCcc------cccCCCCCcEEEc
Q 041867          125 ---SLPWCMT--NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH-FQI-PISLE------PLFNHSRLKTFYA  191 (776)
Q Consensus       125 ---~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~------~l~~l~~L~~L~l  191 (776)
                         .+|..++  ++++|++|+|++|.+.+.+|. .|.++++|++|++++|. +++ .+|..      .+..+++|++|++
T Consensus       477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             ccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence               2677766  788888888888877777775 77778888888888876 664 33321      1223335555555


Q ss_pred             ccCcccccccccccCCCCCcccceEeccCCCCCCcccCc--cccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEcc
Q 041867          192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK--FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLV  269 (776)
Q Consensus       192 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~  269 (776)
                      ++|.+.                             .+|.  .+..+++|+.|++++|.+. .+| . +..+++|+.|+++
T Consensus       556 s~N~L~-----------------------------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          556 GYNNLE-----------------------------EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLD  603 (876)
T ss_dssp             CSSCCC-----------------------------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECC
T ss_pred             eCCcCC-----------------------------ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECc
Confidence            444332                             2333  4455555555555555555 444 2 2455555555555


Q ss_pred             CCCCcCcCCCCCCCCCC-cCEEEceeccCcccCChhhhcc-CcccceeecccccCccCCCcc---CC--CCCCCCEEEcc
Q 041867          270 NDSLGGPFRLPIHSHKR-LGMLDISNNNFRGHIPIEIGDV-LPSLYLFNNSMNALDGSIPSS---LG--NMKFLQILDLS  342 (776)
Q Consensus       270 ~n~~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~  342 (776)
                      +|.+. ..+..+..+++ |+.|++++|.+. .+|..+... .++|+.|++++|.+.+.+|..   +.  .+++|+.|+++
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls  681 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS  681 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence            55555 34444555555 555555555555 444333220 122555555555555433321   11  22356666666


Q ss_pred             CCcCCCcCchhhhhcCCCCcEEEccCccc
Q 041867          343 NNHLTGEIPEHLAVGCVNLQSLALSNNNL  371 (776)
Q Consensus       343 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~l  371 (776)
                      +|.+. .+|..++..+++|+.|++++|++
T Consensus       682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          682 YNEIQ-KFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             SSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence            66665 56665555556666666444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5e-41  Score=385.81  Aligned_cols=542  Identities=21%  Similarity=0.201  Sum_probs=389.2

Q ss_pred             CCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCcc
Q 041867            6 NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLK   85 (776)
Q Consensus         6 ~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~   85 (776)
                      ++++|+|++|+|++..+.+ |.++++|++|+|++|.|++ ++..+|.++++|++|+|++|  .+.+..+..+. ++++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N--~l~~l~~~~f~-~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN--PIQSLALGAFS-GLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC--CCCEECGGGGT-TCTTCC
T ss_pred             CCCEEEeeCCCCCCCCHHH-HhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCC--cCCCCCHHHhc-CCCCCC
Confidence            7999999999999766666 9999999999999999985 44448999999999999999  55555555555 999999


Q ss_pred             EEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCCCC---
Q 041867           86 YLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSI---  161 (776)
Q Consensus        86 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L---  161 (776)
                      +|++++|.+++    +++..|+++++|++|+|++|.++.. .|..++.+++|++|++++|+++ .++...+..+.++   
T Consensus       128 ~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          128 KLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             EEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTC
T ss_pred             EEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhhh
Confidence            99999999986    6666899999999999999999864 6788999999999999999998 5544466655444   


Q ss_pred             -CEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCE
Q 041867          162 -EKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET  240 (776)
Q Consensus       162 -~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  240 (776)
                       ..++++.|.+.. ++.. ......++.+++..|.........                           .+..+..++.
T Consensus       203 ~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~---------------------------~~~~l~~l~~  253 (635)
T 4g8a_A          203 NLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKT---------------------------CIQGLAGLEV  253 (635)
T ss_dssp             CCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHH---------------------------HHHTTTTCEE
T ss_pred             hhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccch---------------------------hhcCCccccc
Confidence             478899998873 3322 334445677888777544322111                           1111122222


Q ss_pred             EEcCCC------CCcccCChHHhhcCCCCcEEEccCCCCc---CcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcc
Q 041867          241 VELSHI------KMNGEFPTWLLENNTKLRQLSLVNDSLG---GPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS  311 (776)
Q Consensus       241 L~l~~~------~~~~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~  311 (776)
                      ..+..+      .+....... +.....+....+..+...   ......+....+++.+++.++.+....+  + .....
T Consensus       254 ~~l~~~~~~~~~~l~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~-~~~~~  329 (635)
T 4g8a_A          254 HRLVLGEFRNEGNLEKFDKSA-LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--F-SYNFG  329 (635)
T ss_dssp             EEEEEECCTTSCCCSCCCTTT-TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--G-GSCCC
T ss_pred             ccccccccccccccccccccc-cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--c-ccchh
Confidence            111100      000011111 123333444333322221   1222345556677788887777653222  1 12457


Q ss_pred             cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867          312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG  391 (776)
Q Consensus       312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~  391 (776)
                      ++.+++.+|.+....+   ..++.|+.+++..|.+. ..+..  ..+++|+.|++++|.+..         .+..+..+.
T Consensus       330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~--~~l~~L~~L~ls~n~l~~---------~~~~~~~~~  394 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSE--VDLPSLEFLDLSRNGLSF---------KGCCSQSDF  394 (635)
T ss_dssp             CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCCC--CBCTTCCEEECCSSCCBE---------EEECCHHHH
T ss_pred             hhhhhcccccccCcCc---ccchhhhhcccccccCC-CCccc--ccccccccchhhcccccc---------ccccccchh
Confidence            8888888887764433   24577888888888776 33322  257889999977776542         123455667


Q ss_pred             CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867          392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP  471 (776)
Q Consensus       392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  471 (776)
                      .+.+|+++++..+.... .+..+..+++|+.++++.+......                                   .+
T Consensus       395 ~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~-----------------------------------~~  438 (635)
T 4g8a_A          395 GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS-----------------------------------EF  438 (635)
T ss_dssp             SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT-----------------------------------SS
T ss_pred             hhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc-----------------------------------cc
Confidence            78899999999998874 4556888999999999988765332                                   22


Q ss_pred             hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCccc-CCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH-GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                      ..|..+++++.++++.|.+.+..+..+..++.++.|++++|++. +..|..|..++                        
T Consensus       439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------------------------  494 (635)
T 4g8a_A          439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------------------  494 (635)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------------------------
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc------------------------
Confidence            34677888999999999999888888999999999999999754 44566666544                        


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE  630 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  630 (776)
                                                   +|++|+|++|++++..|..|.++++|++|+|++|+|+++++..|.++++|+
T Consensus       495 -----------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          495 -----------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             -----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             -----------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence                                         899999999999999999999999999999999999999999999999999


Q ss_pred             EEECcCCccCCcCCccccCC-CCCCEEecccccCcccCCC-ccccccc-cCcccccCCCCCCCCCCC
Q 041867          631 SLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIPE-WTAQFAT-FNESSYEGNTFLCGLPLP  694 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~p~-~~~~~~~-l~~~~~~~n~~~c~~~~~  694 (776)
                      +|||++|+|++..|+.+..+ ++|+.|++++|++.|.+.- |+..|.. -.....+.....|.-|..
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~  612 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  612 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence            99999999999999999988 6899999999999985542 3322211 111112234567876654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-40  Score=373.23  Aligned_cols=464  Identities=17%  Similarity=0.186  Sum_probs=304.8

Q ss_pred             CCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCC
Q 041867           29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCS  108 (776)
Q Consensus        29 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~  108 (776)
                      +...+++++++|.++ .+|. .+.  ++|++|++++|  .+.+..+..+. ++++|++|++++|.+++    +++..|..
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N--~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~----~~~~~~~~   98 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQN--SISELRMPDIS-FLSELRVLRLSHNRIRS----LDFHVFLF   98 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSS--CCCCCCGGGTT-TCTTCCEEECCSCCCCE----ECTTTTTT
T ss_pred             cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCC--CccccChhhhc-cCCCccEEECCCCCCCc----CCHHHhCC
Confidence            344477777777776 3554 232  67777777777  44454455555 77777777777777764    44456777


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCC-cccccCCCCCCEEeccCCccccccCcccccCCCCC-
Q 041867          109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSIS-SSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRL-  186 (776)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L-  186 (776)
                      +++|++|+|++|+++ .+|..  .+++|++|++++|.++ .++ +..|.++++|++|++++|.+++ ..   +..+++| 
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~  170 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLH  170 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSC
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhce
Confidence            777777777777777 34444  6777777777777776 333 1267777777777777777663 22   3333344 


Q ss_pred             -cEEEcccCcc--cccccccccCCCCCcccceEeccCCCCCCcccCccccCCC-CcCEEEcCCCCCcccCChHHhhcCCC
Q 041867          187 -KTFYADNNEL--NAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH-DLETVELSHIKMNGEFPTWLLENNTK  262 (776)
Q Consensus       187 -~~L~l~~n~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~  262 (776)
                       ++|++++|.+  ....                            |..+..+. ..-.+++++|.+.+.++...+..+++
T Consensus       171 L~~L~L~~n~l~~~~~~----------------------------~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~  222 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGE----------------------------TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH  222 (562)
T ss_dssp             EEEEEEEESSCCCCSSS----------------------------CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred             eeEEEeecccccccccC----------------------------cccccccCcceEEEEecCccchhhhhhhcccccce
Confidence             7777777765  3221                            11222111 01123444554444444433344555


Q ss_pred             CcEEEccCCCCcC----cCCCCCCCCCCcCEEEceeccCcccCChhhh--ccCcccceeecccccCccCCCccC-----C
Q 041867          263 LRQLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGHIPIEIG--DVLPSLYLFNNSMNALDGSIPSSL-----G  331 (776)
Q Consensus       263 L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-----~  331 (776)
                      |+.+++++|....    .....+..+++|+.++++++.+.+.......  ...++|++|++++|.+.+.+|..+     .
T Consensus       223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred             EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence            5555555543100    0011234456666666666655432111111  013478888888888887777766     6


Q ss_pred             CCCCCCEEEccCCcCCCcCchhhhhc---CCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc
Q 041867          332 NMKFLQILDLSNNHLTGEIPEHLAVG---CVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG  408 (776)
Q Consensus       332 ~l~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~  408 (776)
                      .++.|+.++++.+.+  .+|......   ..+|+.|++++|.+.           ...  ....+++|++|++++|.+++
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-----------~~~--~~~~l~~L~~L~l~~n~l~~  367 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-----------HMV--CPPSPSSFTFLNFTQNVFTD  367 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-----------CCC--CCSSCCCCCEEECCSSCCCT
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-----------ccc--CccCCCCceEEECCCCcccc
Confidence            666777777777766  555332222   256888887666543           111  12567888888888888888


Q ss_pred             CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc
Q 041867          409 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN  488 (776)
Q Consensus       409 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  488 (776)
                      ..|..+..+++|++|++++|++.+..                                  ..|..+.++++|+.|++++|
T Consensus       368 ~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------------~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          368 SVFQGCSTLKRLQTLILQRNGLKNFF----------------------------------KVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             TTTTTCCSCSSCCEEECCSSCCCBTT----------------------------------HHHHTTTTCTTCCEEECTTS
T ss_pred             chhhhhcccCCCCEEECCCCCcCCcc----------------------------------cchhhhcCCCCCCEEECCCC
Confidence            78888888888888888888776321                                  23455788999999999999


Q ss_pred             cCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeec
Q 041867          489 NLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTK  567 (776)
Q Consensus       489 ~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (776)
                      .+++ ..+..+..+++|++|++++|++++..|..+.                                            
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--------------------------------------------  449 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------------------------------------------  449 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--------------------------------------------
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--------------------------------------------
Confidence            9998 4455688999999999999999865554332                                            


Q ss_pred             ceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCC
Q 041867          568 NIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP  644 (776)
Q Consensus       568 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  644 (776)
                                 ++|+.|++++|+++ .+|..+..+++|++|+|++|+++++++..|..+++|+.|++++|++.+..+
T Consensus       450 -----------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          450 -----------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             -----------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             -----------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                       27999999999999 566666699999999999999997766669999999999999999986544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.3e-38  Score=345.35  Aligned_cols=364  Identities=20%  Similarity=0.187  Sum_probs=192.8

Q ss_pred             CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      ++|+.|++++|.+.+..|..+ .++++|+.|++++|.+.+ ..+..|..+++|++|++++|.+.+..|..+.. +++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred             CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence            556666666666655444443 566666666666665543 22344566666666666666665444444443 556666


Q ss_pred             eecccccCccCCCcc--CCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867          315 FNNSMNALDGSIPSS--LGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN  392 (776)
Q Consensus       315 L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~  392 (776)
                      |++++|.+.+..+..  +..+++|++|++++|.+.+..|..++.++++|++|++++|+           +.+..+..+..
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~l~~  176 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-----------VKSICEEDLLN  176 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-----------BSCCCTTTSGG
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-----------ccccChhhhhc
Confidence            666666655433222  55566666666666666543344444455666666633333           23344444444


Q ss_pred             C--CCCCEEeccCCccccCCCcc--------cCCCCCCcEEEccccccCCCCCCCCC----CCcccEEEcCCcccCcccc
Q 041867          393 L--TWLQYIIMPNNHLEGPIPVE--------FCQLDLLQILDISDNNISGSLPSCFH----PLSIKQVHLSKNMLHGQLK  458 (776)
Q Consensus       393 l--~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~L~~L~l~~n~l~~~~~  458 (776)
                      +  .+|+.|++++|.+.+..+..        +..+++|+.|++++|.+.+..+..+.    ..+++.+++++|...+.  
T Consensus       177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--  254 (455)
T 3v47_A          177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS--  254 (455)
T ss_dssp             GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC--
T ss_pred             cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc--
Confidence            3  45566666666655443322        22445566666666655543333222    24555555555544322  


Q ss_pred             cccCCccccccCChhhccC--ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCC
Q 041867          459 RDLSYNRLNGSIPDWVDGL--SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSS  536 (776)
Q Consensus       459 ~~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~  536 (776)
                       .+..+.+....+..+.++  ++|+.|++++|.+++..+..+..+++|++|++++|++.+..|..|..++          
T Consensus       255 -~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------  323 (455)
T 3v47_A          255 -SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT----------  323 (455)
T ss_dssp             -CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----------
T ss_pred             -ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----------
Confidence             122233333333333332  4555556665555555555555555555555555555555554444432          


Q ss_pred             cchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccc
Q 041867          537 LDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLI  616 (776)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  616 (776)
                                                                 +|++|++++|.+++..|..|.++++|++|+|++|+++
T Consensus       324 -------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          324 -------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             -------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence                                                       5555555555555555555555555555555555555


Q ss_pred             ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          617 GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       617 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      +..|..|.++++|++|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus       361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            5555555555555555555555555444455555555555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-37  Score=341.86  Aligned_cols=373  Identities=18%  Similarity=0.205  Sum_probs=314.2

Q ss_pred             CEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecc
Q 041867          239 ETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNS  318 (776)
Q Consensus       239 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~  318 (776)
                      +.++.+++++. .+|.    -.++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34566666655 4554    237899999999999999899999999999999999999867766555558999999999


Q ss_pred             cccCccCCCccCCCCCCCCEEEccCCcCCCcCch-hhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcc-ccCCCCC
Q 041867          319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRW-LGNLTWL  396 (776)
Q Consensus       319 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~-~~~l~~L  396 (776)
                      +|.+.+..|..|.++++|++|++++|.+++.++. ..+..+++|++|++++|.           +.+..|.. +..+++|
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-----------IKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-----------CCSCCCCGGGGGCTTC
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-----------cCccCcccccCCCCcc
Confidence            9999988899999999999999999999854443 346679999999965555           45566665 8899999


Q ss_pred             CEEeccCCccccCCCcccCCC--CCCcEEEccccccCCCCCCC---------CCCCcccEEEcCCcccCcccccccCCcc
Q 041867          397 QYIIMPNNHLEGPIPVEFCQL--DLLQILDISDNNISGSLPSC---------FHPLSIKQVHLSKNMLHGQLKRDLSYNR  465 (776)
Q Consensus       397 ~~L~l~~n~i~~~~~~~~~~l--~~L~~L~ls~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~l~~n~  465 (776)
                      ++|++++|.+.+..+..+..+  .+|+.+++++|.+.+..+..         +..++|++|++++|++.+          
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------  226 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE----------  226 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH----------
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc----------
Confidence            999999999999888888776  79999999999998765543         235789999887776654          


Q ss_pred             ccccCChhhccC---ccCCEEEcccccCCcc----------chhhhcC--CCCCCEEeCCCCcccCCCCCCCcCCccccc
Q 041867          466 LNGSIPDWVDGL---SQLSHLILGHNNLEGE----------VLVQLCE--LNQLQLLDLSNNNLHGPIPPCFDNTTLYES  530 (776)
Q Consensus       466 l~~~~~~~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  530 (776)
                         ..|..+...   ++|+.|++++|.+.+.          ....+..  .++|+.|++++|++.+..|..+..++    
T Consensus       227 ---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~----  299 (455)
T 3v47_A          227 ---SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT----  299 (455)
T ss_dssp             ---HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT----
T ss_pred             ---cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC----
Confidence               444444443   8899999998865432          1222322  36899999999999988888887654    


Q ss_pred             ccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeec
Q 041867          531 YSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL  610 (776)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  610 (776)
                                                                       +|++|++++|.+.+..|..|.++++|++|+|
T Consensus       300 -------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  330 (455)
T 3v47_A          300 -------------------------------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNL  330 (455)
T ss_dssp             -------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -------------------------------------------------CCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence                                                             8999999999999999999999999999999


Q ss_pred             ccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867          611 SHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  690 (776)
Q Consensus       611 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~  690 (776)
                      ++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++++.+++++||+.|+
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999987777788999999999999999999


Q ss_pred             CCC
Q 041867          691 LPL  693 (776)
Q Consensus       691 ~~~  693 (776)
                      ||.
T Consensus       411 ~~~  413 (455)
T 3v47_A          411 CPR  413 (455)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-36  Score=328.90  Aligned_cols=425  Identities=24%  Similarity=0.259  Sum_probs=205.0

Q ss_pred             CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867            4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS   83 (776)
Q Consensus         4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~   83 (776)
                      .++|++|++++|.+ +.+|.+ ++++++|++|++++|.+.+.+|. .+.++++|+.+++..|  .            ..+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c--~------------~~~   72 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDC--L------------DRQ   72 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHH--H------------HHT
T ss_pred             cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhh--h------------ccC
Confidence            46788888888888 577777 78888888888888888777776 6777777777766665  1            146


Q ss_pred             ccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCE
Q 041867           84 LKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK  163 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  163 (776)
                      +++|++++|.+++    ++.    -.++|++|++++|.+++ +|..   .++|++|++++|.++ .++.  +  .++|++
T Consensus        73 l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~--~--~~~L~~  135 (454)
T 1jl5_A           73 AHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLEY  135 (454)
T ss_dssp             CSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCCE
T ss_pred             CCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC--C--CCCCCE
Confidence            8899999998875    442    13688999999998886 5543   478889999988887 4544  1  267888


Q ss_pred             EeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEc
Q 041867          164 LYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVEL  243 (776)
Q Consensus       164 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  243 (776)
                      |++++|.+++ ++  .+..+++|++|++++|.+..                             +|..   ..+|++|++
T Consensus       136 L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~L  180 (454)
T 1jl5_A          136 LGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIAA  180 (454)
T ss_dssp             EECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEEC
T ss_pred             EECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEEC
Confidence            8888888774 44  36677777777776665431                             1111   124444444


Q ss_pred             CCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCc
Q 041867          244 SHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD  323 (776)
Q Consensus       244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  323 (776)
                      ++|.                         +.+. + .+..+++|+.|++++|.+++ +|..    .++|+.|++++|.+.
T Consensus       181 ~~n~-------------------------l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          181 GNNQ-------------------------LEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE  228 (454)
T ss_dssp             CSSC-------------------------CSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS
T ss_pred             cCCc-------------------------CCcC-c-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC
Confidence            4444                         4432 1 34455555556665555552 2221    235666666666665


Q ss_pred             cCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccC
Q 041867          324 GSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN  403 (776)
Q Consensus       324 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~  403 (776)
                       .+| .+..+++|++|++++|+++ .+|.    .+++|+.|++++|++.           + +|..   .++|++|++++
T Consensus       229 -~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~-----------~-l~~~---~~~L~~L~ls~  286 (454)
T 1jl5_A          229 -ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLT-----------D-LPEL---PQSLTFLDVSE  286 (454)
T ss_dssp             -SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCS-----------C-CCCC---CTTCCEEECCS
T ss_pred             -ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccc-----------c-cCcc---cCcCCEEECcC
Confidence             344 3566666666666666666 4443    2355666664444432           1 2221   24555555555


Q ss_pred             CccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccC-ccCCE
Q 041867          404 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL-SQLSH  482 (776)
Q Consensus       404 n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l-~~L~~  482 (776)
                      |.+++...    -.++|+.|++++|.+.+..                                         .+ ++|+.
T Consensus       287 N~l~~l~~----~~~~L~~L~l~~N~l~~i~-----------------------------------------~~~~~L~~  321 (454)
T 1jl5_A          287 NIFSGLSE----LPPNLYYLNASSNEIRSLC-----------------------------------------DLPPSLEE  321 (454)
T ss_dssp             SCCSEESC----CCTTCCEEECCSSCCSEEC-----------------------------------------CCCTTCCE
T ss_pred             CccCcccC----cCCcCCEEECcCCcCCccc-----------------------------------------CCcCcCCE
Confidence            55553210    0134555555555444210                                         11 36666


Q ss_pred             EEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccccee
Q 041867          483 LILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIF  562 (776)
Q Consensus       483 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (776)
                      |++++|++++. |.   .+++|++|++++|++++. |.   .                                      
T Consensus       322 L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~l-p~---~--------------------------------------  355 (454)
T 1jl5_A          322 LNVSNNKLIEL-PA---LPPRLERLIASFNHLAEV-PE---L--------------------------------------  355 (454)
T ss_dssp             EECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---C--------------------------------------
T ss_pred             EECCCCccccc-cc---cCCcCCEEECCCCccccc-cc---h--------------------------------------
Confidence            77777766652 22   146777777777777632 22   1                                      


Q ss_pred             eeeecceEEEeccccccccceEEccCCcCCC--CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867          563 EFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG--PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN  640 (776)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  640 (776)
                                     +++|++|++++|++++  .+|..+..        ++.|.+.+.+|..   +++|+.|++++|+++
T Consensus       356 ---------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          356 ---------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLR  409 (454)
T ss_dssp             ---------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------
T ss_pred             ---------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCC
Confidence                           2267777777777776  45554433        2345555555543   468889999999988


Q ss_pred             C--cCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867          641 G--KIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  674 (776)
Q Consensus       641 ~--~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  674 (776)
                      +  .+|.      +++.|.+.+|.+.+..|.+...+
T Consensus       410 ~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          410 EFPDIPE------SVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ------------------------------------
T ss_pred             ccccchh------hHhheeCcCcccCCccccCHHHh
Confidence            6  4443      46777888888888777655443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.8e-36  Score=323.72  Aligned_cols=404  Identities=23%  Similarity=0.302  Sum_probs=196.7

Q ss_pred             CCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCC-------------CEEeCCCCcCc
Q 041867           81 MPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSL-------------RILDVSSNQLT  147 (776)
Q Consensus        81 l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~  147 (776)
                      ..+|++|++++|.+ +   .+|. +++++++|++|++++|++.+..|.+++++++|             ++|++++|.++
T Consensus        10 ~~~L~~L~l~~n~l-~---~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~   84 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-T---EMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS   84 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred             cccchhhhcccCch-h---hCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence            45677777777777 3   4654 67777777777777777777777777776654             55555555544


Q ss_pred             ccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcc
Q 041867          148 GSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVT  227 (776)
Q Consensus       148 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  227 (776)
                       .+|.    -.++|++|++++|.+++ ++.    ..                                            
T Consensus        85 -~lp~----~~~~L~~L~l~~n~l~~-lp~----~~--------------------------------------------  110 (454)
T 1jl5_A           85 -SLPE----LPPHLESLVASCNSLTE-LPE----LP--------------------------------------------  110 (454)
T ss_dssp             -CCCS----CCTTCSEEECCSSCCSS-CCC----CC--------------------------------------------
T ss_pred             -cCCC----CcCCCCEEEccCCcCCc-ccc----cc--------------------------------------------
Confidence             3333    12344555555554442 221    11                                            


Q ss_pred             cCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhc
Q 041867          228 FPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGD  307 (776)
Q Consensus       228 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  307 (776)
                              ++|+.|++++|.+.+ ++.    ..++|++|++++|.+.+ .+ .+..+++|++|++++|++++ +|..   
T Consensus       111 --------~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---  171 (454)
T 1jl5_A          111 --------QSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---  171 (454)
T ss_dssp             --------TTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---
T ss_pred             --------CCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---
Confidence                    344445555544442 111    11456666666666665 23 46666777777777777663 4432   


Q ss_pred             cCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCC
Q 041867          308 VLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP  387 (776)
Q Consensus       308 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~  387 (776)
                       .++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..    .++|++|++++|.+.            .+|
T Consensus       172 -~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~------------~lp  231 (454)
T 1jl5_A          172 -PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE------------ELP  231 (454)
T ss_dssp             -CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS------------SCC
T ss_pred             -cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC------------ccc
Confidence             3477777777777775 44 5777788888888888777 45542    347777775555443            344


Q ss_pred             ccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccc
Q 041867          388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN  467 (776)
Q Consensus       388 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~  467 (776)
                       .++.+++|++|++++|++.+ +|.   .+++|+.|++++|.+.+... .  +.+|++|++++|++.+.           
T Consensus       232 -~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~-~--~~~L~~L~ls~N~l~~l-----------  292 (454)
T 1jl5_A          232 -ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE-L--PQSLTFLDVSENIFSGL-----------  292 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-C--CTTCCEEECCSSCCSEE-----------
T ss_pred             -ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc-c--cCcCCEEECcCCccCcc-----------
Confidence             36777788888888887775 332   23677888888887775322 1  35667776666655421           


Q ss_pred             ccCChhhccCccCCEEEcccccCCccchhhhcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccc
Q 041867          468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS  546 (776)
Q Consensus       468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (776)
                         +.   -.++|+.|++++|++++..     .+ ++|+.|++++|++.+ +|..                         
T Consensus       293 ---~~---~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~-------------------------  335 (454)
T 1jl5_A          293 ---SE---LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL-------------------------  335 (454)
T ss_dssp             ---SC---CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC-------------------------
T ss_pred             ---cC---cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc-------------------------
Confidence               10   0146777777777776421     23 467777777777764 2221                         


Q ss_pred             cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccc--cCccccC
Q 041867          547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIG--LIPSTFS  624 (776)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~  624 (776)
                                                     +++|++|++++|.+++ +|.   .+++|++|++++|++++  .+|..+.
T Consensus       336 -------------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~  380 (454)
T 1jl5_A          336 -------------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE  380 (454)
T ss_dssp             -------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             -------------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence                                           1257777777777763 443   35677777777777776  3344333


Q ss_pred             CCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc--cCCCccccccccCcccccCCCCCCC
Q 041867          625 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNTFLCG  690 (776)
Q Consensus       625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~~~~l~~~~~~~n~~~c~  690 (776)
                            .  ++.|...+.+|..   +++|+.|++++|++++  .+|.+      +..+.+.+|.+.|.
T Consensus       381 ------~--L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~  431 (454)
T 1jl5_A          381 ------D--LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP  431 (454)
T ss_dssp             ------E--EECCC------------------------------------------------------
T ss_pred             ------h--hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence                  2  2335555555543   4789999999999997  56653      45556677666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=332.22  Aligned_cols=306  Identities=21%  Similarity=0.227  Sum_probs=180.5

Q ss_pred             CCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEE
Q 041867          285 KRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSL  364 (776)
Q Consensus       285 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  364 (776)
                      ++++.|++++|.+++..+..+.. +++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|...+.++++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            34555555555555333333332 455555555555555444555555555555555555554 4444444445555555


Q ss_pred             EccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCccc
Q 041867          365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIK  444 (776)
Q Consensus       365 ~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  444 (776)
                      ++++|+           +.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+            
T Consensus       110 ~Ls~n~-----------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------  166 (477)
T 2id5_A          110 DISENK-----------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS------------  166 (477)
T ss_dssp             ECTTSC-----------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS------------
T ss_pred             ECCCCc-----------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc------------
Confidence            533332           222344444555555555555555554444445555555555555554443            


Q ss_pred             EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcC
Q 041867          445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN  524 (776)
Q Consensus       445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  524 (776)
                                              ..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+..|.....
T Consensus       167 ------------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          167 ------------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             ------------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             ------------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence                                    33445666677777777777777666666777777777777776655444332221


Q ss_pred             CcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCcc
Q 041867          525 TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR  604 (776)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  604 (776)
                                                                           ..+|++|++++|.+++..+..|..+++
T Consensus       223 -----------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          223 -----------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             -----------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             -----------------------------------------------------CccccEEECcCCcccccCHHHhcCccc
Confidence                                                                 115677777777777555566777777


Q ss_pred             CCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccC
Q 041867          605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG  684 (776)
Q Consensus       605 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~  684 (776)
                      |+.|+|++|.++++.+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+..+++++.+++++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            77777777777766666677777777777777777766677777777777777777777766555666666777777777


Q ss_pred             CCCCCCCC
Q 041867          685 NTFLCGLP  692 (776)
Q Consensus       685 n~~~c~~~  692 (776)
                      |||.|+|+
T Consensus       330 N~l~c~c~  337 (477)
T 2id5_A          330 NPLACDCR  337 (477)
T ss_dssp             SCEECSGG
T ss_pred             CCccCccc
Confidence            77777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=323.18  Aligned_cols=348  Identities=20%  Similarity=0.172  Sum_probs=242.0

Q ss_pred             cCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeec
Q 041867          238 LETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNN  317 (776)
Q Consensus       238 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l  317 (776)
                      -+.++.+++++. .+|..+   .+.++.|++++|.+.+..+..|..+++|++|++++|.+++..|..+.. +++|+.|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEEC
Confidence            357888887776 566543   368999999999999998999999999999999999999766766665 899999999


Q ss_pred             ccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCC
Q 041867          318 SMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ  397 (776)
Q Consensus       318 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~  397 (776)
                      ++|.+....+..|.++++|++|++++|.+. .++...+..+++|+.|++++|.           +.+..+..|.++++|+
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~-----------l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND-----------LVYISHRAFSGLNSLE  155 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTT-----------CCEECTTSSTTCTTCC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCc-----------cceeChhhccCCCCCC
Confidence            999999777778899999999999999998 6666666789999999955554           4556778899999999


Q ss_pred             EEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccC
Q 041867          398 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGL  477 (776)
Q Consensus       398 ~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l  477 (776)
                      +|++++|.+++..+..|..+++|+.|++++|.+.+..+..+                                    ..+
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~------------------------------------~~l  199 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF------------------------------------KRL  199 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS------------------------------------CSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc------------------------------------ccC
Confidence            99999999998888889999999999999999886554444                                    344


Q ss_pred             ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      ++|+.|++++|...+..+.......+|+.|++++|++++..+..+..+                                
T Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------  247 (477)
T 2id5_A          200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--------------------------------  247 (477)
T ss_dssp             TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--------------------------------
T ss_pred             cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc--------------------------------
Confidence            445555555444433333333333455555555555543322223222                                


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                           ++|+.|+|++|.+++..+..|..+++|+.|+|++|+++++.|..|.++++|+.|+|++|
T Consensus       248 ---------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          248 ---------------------VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             ---------------------TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             ---------------------cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence                                 24555555555555555555666666666666666666666666666666666666666


Q ss_pred             ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++++..+..|..+++|+.|++++|++.|..+.. ..........+.++...|.+|
T Consensus       307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             cCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence            666555555666666666666666666543321 111222334455555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.3e-33  Score=304.80  Aligned_cols=260  Identities=28%  Similarity=0.421  Sum_probs=154.4

Q ss_pred             CCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCC
Q 041867          281 IHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN  360 (776)
Q Consensus       281 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  360 (776)
                      +..+++|++|++++|.+.+ ++ .+. .+++|+.|++. +.+.+.  ..+..+++|++|++++|.+. .++.  +..+++
T Consensus       130 ~~~l~~L~~L~l~~n~l~~-~~-~~~-~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~  200 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISD-IS-ALS-GLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTN  200 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECC-CG-GGT-TCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTT
T ss_pred             HcCCCCCCEEECCCCccCC-Ch-hhc-cCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC-CChh--hccCCC
Confidence            3344445555555554442 21 111 24455555543 222221  12556666777777776665 3432  335666


Q ss_pred             CcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCC
Q 041867          361 LQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP  440 (776)
Q Consensus       361 L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  440 (776)
                      |++|++++|.+.           +..+  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+     
T Consensus       201 L~~L~l~~n~l~-----------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-----  260 (466)
T 1o6v_A          201 LESLIATNNQIS-----------DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-----  260 (466)
T ss_dssp             CSEEECCSSCCC-----------CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-----
T ss_pred             CCEEEecCCccc-----------cccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-----
Confidence            666665444432           2222  45566666666666666543  345566666666666666553211     


Q ss_pred             CcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC
Q 041867          441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP  520 (776)
Q Consensus       441 ~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  520 (776)
                                                       +.++++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+ 
T Consensus       261 ---------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-  304 (466)
T 1o6v_A          261 ---------------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-  304 (466)
T ss_dssp             ---------------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred             ---------------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence                                             4556667777777776665443  6667777777777777664433 


Q ss_pred             CCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc
Q 041867          521 CFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG  600 (776)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  600 (776)
                       +..                                                     +++|+.|++++|++++..|  +.
T Consensus       305 -~~~-----------------------------------------------------l~~L~~L~L~~n~l~~~~~--~~  328 (466)
T 1o6v_A          305 -ISN-----------------------------------------------------LKNLTYLTLYFNNISDISP--VS  328 (466)
T ss_dssp             -GGG-----------------------------------------------------CTTCSEEECCSSCCSCCGG--GG
T ss_pred             -hcC-----------------------------------------------------CCCCCEEECcCCcCCCchh--hc
Confidence             222                                                     3367777777777776544  66


Q ss_pred             cCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867          601 NLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       601 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  665 (776)
                      .+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            777777777777777765  457777777777777777776665  6777777777777777775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.6e-33  Score=304.17  Aligned_cols=357  Identities=19%  Similarity=0.214  Sum_probs=204.1

Q ss_pred             CCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCC
Q 041867          105 GLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS  184 (776)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  184 (776)
                      .++++++|++|++++|.+++. | .+..+++|++|++++|.++ .++   +..+++|++|++++|.+++ ++   +..++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~-~~---~~~l~  106 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN-LD---VTPLT  106 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence            567788888888888888854 5 6888888888888888887 443   7788888888888888774 22   56667


Q ss_pred             CCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCc
Q 041867          185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR  264 (776)
Q Consensus       185 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  264 (776)
                      +|++|++++|.+..                             +|  +..+++|+.|++++|++++ ++   ++.+++|+
T Consensus       107 ~L~~L~L~~N~l~~-----------------------------l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~  151 (457)
T 3bz5_A          107 KLTYLNCDTNKLTK-----------------------------LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLT  151 (457)
T ss_dssp             TCCEEECCSSCCSC-----------------------------CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCC
T ss_pred             cCCEEECCCCcCCe-----------------------------ec--CCCCCcCCEEECCCCccce-ec---cccCCcCC
Confidence            77777776665431                             11  3344555555555555543 11   13444444


Q ss_pred             EEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCC
Q 041867          265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNN  344 (776)
Q Consensus       265 ~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  344 (776)
                      .|++++|...+..  .+..++                         +|+.|++++|.+++ +|  +..+++|+.|++++|
T Consensus       152 ~L~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          152 ELDCHLNKKITKL--DVTPQT-------------------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             EEECTTCSCCCCC--CCTTCT-------------------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred             EEECCCCCccccc--ccccCC-------------------------cCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence            4444444222211  223333                         34444444444332 12  334444555555555


Q ss_pred             cCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEE
Q 041867          345 HLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILD  424 (776)
Q Consensus       345 ~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  424 (776)
                      .++ .++   +..+++|+.|++++|+++           + +|  ++.+++|++|++++|.+++..   +..+++|+.|+
T Consensus       202 ~l~-~~~---l~~l~~L~~L~Ls~N~l~-----------~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~  260 (457)
T 3bz5_A          202 NIT-KLD---LNQNIQLTFLDCSSNKLT-----------E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLH  260 (457)
T ss_dssp             CCS-CCC---CTTCTTCSEEECCSSCCS-----------C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred             cCC-eec---cccCCCCCEEECcCCccc-----------c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEe
Confidence            544 221   223444444443333322           2 22  444455555555555554432   23344455555


Q ss_pred             ccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCC
Q 041867          425 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQL  504 (776)
Q Consensus       425 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  504 (776)
                      +++|++.             .+             ++++|.+.+.+|  +.++++|+.|++++|...+..|.   ..++|
T Consensus       261 l~~n~L~-------------~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L  309 (457)
T 3bz5_A          261 CIQTDLL-------------EI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI  309 (457)
T ss_dssp             CTTCCCS-------------CC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred             ccCCCCC-------------EE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence            4444322             22             333333333333  34567777777777765555442   23445


Q ss_pred             CEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceE
Q 041867          505 QLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGL  584 (776)
Q Consensus       505 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  584 (776)
                      +.|++++|                                                                  ++|++|
T Consensus       310 ~~L~l~~~------------------------------------------------------------------~~L~~L  323 (457)
T 3bz5_A          310 TELDLSQN------------------------------------------------------------------PKLVYL  323 (457)
T ss_dssp             SCCCCTTC------------------------------------------------------------------TTCCEE
T ss_pred             eEechhhc------------------------------------------------------------------ccCCEE
Confidence            55555444                                                                  267888


Q ss_pred             EccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867          585 DLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       585 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  664 (776)
                      ++++|++++. +  +..+++|+.|++++|+++++        +.|+.|++++|.+.+.     ..+..|..+++++|+++
T Consensus       324 ~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          324 YLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT  387 (457)
T ss_dssp             ECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred             ECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence            8888888874 2  77888888888888888753        4566677888888765     23445777888888888


Q ss_pred             ccCCCc
Q 041867          665 GEIPEW  670 (776)
Q Consensus       665 ~~~p~~  670 (776)
                      |.+|..
T Consensus       388 g~ip~~  393 (457)
T 3bz5_A          388 IAVSPD  393 (457)
T ss_dssp             EECCTT
T ss_pred             EEcChh
Confidence            888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-32  Score=301.35  Aligned_cols=345  Identities=24%  Similarity=0.327  Sum_probs=276.3

Q ss_pred             CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      +++++.|+++++.+. .+|.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+  +. .+++|++
T Consensus        45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GT-TCTTCCE
T ss_pred             hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hc-CCCCCCE
Confidence            467788888888776 3454  3678888888888888887654  7888888888888888874433  33 3788888


Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      |++++|.+.+..  .+..+++|++|++++|.+. .++.  +..+++|+.|++++ .+           .+.  ..+..++
T Consensus       117 L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~-----------~~~--~~~~~l~  177 (466)
T 1o6v_A          117 LTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QV-----------TDL--KPLANLT  177 (466)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SC-----------CCC--GGGTTCT
T ss_pred             EECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cc-----------cCc--hhhccCC
Confidence            888888887543  2788889999999998887 5553  45688888888642 22           222  2378888


Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+ ...+++|++|++++|++.+              + ..+
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------~-~~l  239 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--------------I-GTL  239 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------C-GGG
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------c-hhh
Confidence            999999999988754  347888899999999998886654 3337889999888777652              1 357


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..                              
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------  285 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------  285 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred             hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence            889999999999999997655  8899999999999999986544  333                              


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                             +++|+.|++++|++.+..+  +..+++|+.|++++|++++..|  +..+++|+.|++
T Consensus       286 -----------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          286 -----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                   3489999999999997654  8899999999999999998866  788999999999


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  689 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c  689 (776)
                      ++|++++.  ..+..+++|+.|++++|++++..|  +..++.++.+++++|++..
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            99999965  468999999999999999998877  6889999999999998876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-32  Score=299.26  Aligned_cols=153  Identities=20%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      +++|++|++++|...+.++   +..+++|+.|++++|.+++..   +..+++|+.|++++|.+++. +  +. .+++|+.
T Consensus       147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~  216 (457)
T 3bz5_A          147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTF  216 (457)
T ss_dssp             CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSE
T ss_pred             CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c--cc-cCCCCCE
Confidence            3444444444443333332   245555666666666555531   55566666666666666532 2  22 2567777


Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      |++++|.+++ +|  +..+++|+.|++++|+++ .+|.   ..+++|+.|++++|+                        
T Consensus       217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~------------------------  265 (457)
T 3bz5_A          217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTD------------------------  265 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCC------------------------
T ss_pred             EECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCC------------------------
Confidence            7777777775 34  667788888888888887 4442   246788888865554                        


Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccC
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  431 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~  431 (776)
                       |+.|++++|.+.+.+|  +..+++|+.|++++|...
T Consensus       266 -L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          266 -LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             -CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             -CCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence             3445555555444333  345566666666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-33  Score=300.09  Aligned_cols=335  Identities=22%  Similarity=0.256  Sum_probs=190.7

Q ss_pred             CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      +++++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+               
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---------------  107 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY---------------  107 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC---------------
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc---------------
Confidence            466777777777665 4555555677777777777777666655566666666666666665553               


Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                                ..|..|..+++|++|++++|.++ .+|..++..+++|++|++++|+           +.+..+..+..++
T Consensus       108 ----------~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-----------l~~~~~~~~~~l~  165 (390)
T 3o6n_A          108 ----------LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-----------LERIEDDTFQATT  165 (390)
T ss_dssp             ----------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-----------CCBCCTTTTSSCT
T ss_pred             ----------CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCc-----------cCccChhhccCCC
Confidence                      22333444444444444444444 4444444444444444432222           2223344444455


Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      +|++|++++|.+++..   +..+++|+.+++++|.+.+..    .+.+|++|++++|.+...              |.  
T Consensus       166 ~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~--------------~~--  222 (390)
T 3o6n_A          166 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RG--  222 (390)
T ss_dssp             TCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE--------------EC--
T ss_pred             CCCEEECCCCcCCccc---cccccccceeecccccccccC----CCCcceEEECCCCeeeec--------------cc--
Confidence            5555555555544321   333445555555555444211    123445554444443311              11  


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..++                            
T Consensus       223 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------  272 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------------  272 (390)
T ss_dssp             CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------------
T ss_pred             cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc----------------------------
Confidence            1135666777777766643  3566667777777777776665555554433                            


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                               +|++|++++|++++ +|..+..+++|++|+|++|+++++ |..+..+++|+.|++
T Consensus       273 -------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          273 -------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL  325 (390)
T ss_dssp             -------------------------SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred             -------------------------cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEEC
Confidence                                     67777777777663 355556677777777777777744 445666777888888


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++|+++.. +  +..+++|+.|++++|++.+....  ..+..+....+.+++..|.++
T Consensus       326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            88887744 2  56677888888888888764322  234455566667777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-32  Score=292.70  Aligned_cols=316  Identities=22%  Similarity=0.210  Sum_probs=266.0

Q ss_pred             CCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCc
Q 041867          283 SHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ  362 (776)
Q Consensus       283 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  362 (776)
                      .+++++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence            3578899999999987 677766666899999999999999887789999999999999999998 67777777899999


Q ss_pred             EEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCc
Q 041867          363 SLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS  442 (776)
Q Consensus       363 ~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  442 (776)
                      +|++++|++           +...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..  ....++
T Consensus       121 ~L~L~~n~l-----------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~  187 (390)
T 3o6n_A          121 VLVLERNDL-----------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS  187 (390)
T ss_dssp             EEECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred             EEECCCCcc-----------CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence            999666654           4445556789999999999999999888889999999999999999998653  223688


Q ss_pred             ccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCC
Q 041867          443 IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCF  522 (776)
Q Consensus       443 L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  522 (776)
                      |+++++++|.+.+                  +...++|+.|++++|.+.....   ...++|+.|++++|++.+.  ..+
T Consensus       188 L~~L~l~~n~l~~------------------~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          188 LFHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             CSEEECCSSCCSE------------------EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cceeecccccccc------------------cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH
Confidence            9999888887652                  2334689999999999986643   2357899999999998753  223


Q ss_pred             cCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccC
Q 041867          523 DNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNL  602 (776)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  602 (776)
                      ..                                                     +++|++|++++|.+.+..|..|..+
T Consensus       245 ~~-----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          245 LN-----------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             GG-----------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             cC-----------------------------------------------------CCCccEEECCCCcCCCcChhHcccc
Confidence            22                                                     4589999999999998889999999


Q ss_pred             ccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccc
Q 041867          603 TRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY  682 (776)
Q Consensus       603 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~  682 (776)
                      ++|+.|+|++|+++++ |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. |  +..+++++.+++
T Consensus       272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence            9999999999999975 566788999999999999998 5677788899999999999999864 3  467889999999


Q ss_pred             cCCCCCCCCCCC
Q 041867          683 EGNTFLCGLPLP  694 (776)
Q Consensus       683 ~~n~~~c~~~~~  694 (776)
                      ++|||.|+|...
T Consensus       347 ~~N~~~~~~~~~  358 (390)
T 3o6n_A          347 SHNDWDCNSLRA  358 (390)
T ss_dssp             CSSCEEHHHHHH
T ss_pred             CCCCccchhHHH
Confidence            999999987543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-32  Score=284.36  Aligned_cols=261  Identities=34%  Similarity=0.528  Sum_probs=212.1

Q ss_pred             CCCCEEEccCCcCCC--cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCC
Q 041867          334 KFLQILDLSNNHLTG--EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIP  411 (776)
Q Consensus       334 ~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~  411 (776)
                      .+++.|++++|.+.+  .+|..+. .+++|++|++++          .|.+.+.+|..|+.+++|++|++++|.+.+..|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~----------~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGG----------INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEE----------ETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred             ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCC----------CCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence            456777777777765  5665443 466677666442          133334566666666666777766666666666


Q ss_pred             cccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCC
Q 041867          412 VEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE  491 (776)
Q Consensus       412 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  491 (776)
                      ..|..+++|++|++++|.+.                                    +..|..+..+++|++|++++|+++
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             HHHhCCCCCCEEeCCCCccC------------------------------------CcCChHHhcCCCCCeEECcCCccc
Confidence            66666666666666666554                                    356677888999999999999999


Q ss_pred             ccchhhhcCCC-CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867          492 GEVLVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV  570 (776)
Q Consensus       492 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (776)
                      +..|..+..++ +|+.|++++|++.+..|..+..+                                             
T Consensus       163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---------------------------------------------  197 (313)
T 1ogq_A          163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------------------------------------------  197 (313)
T ss_dssp             EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---------------------------------------------
T ss_pred             CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---------------------------------------------
Confidence            88899999998 99999999999998888766542                                             


Q ss_pred             EEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCC
Q 041867          571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL  650 (776)
Q Consensus       571 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  650 (776)
                               .|+.|++++|.+++..|..|..+++|+.|+|++|.+++.+|. +..+++|++|++++|++++.+|..+..+
T Consensus       198 ---------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          198 ---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             ---------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ---------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence                     389999999999999999999999999999999999977665 8889999999999999999999999999


Q ss_pred             CCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCC
Q 041867          651 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR  697 (776)
Q Consensus       651 ~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~  697 (776)
                      ++|+.|++++|++++.+|.. ..+++++.+++++||+.|+.|+..|.
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence            99999999999999999996 88999999999999999998877773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.7e-32  Score=308.33  Aligned_cols=335  Identities=21%  Similarity=0.217  Sum_probs=197.2

Q ss_pred             CCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccce
Q 041867          235 QHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL  314 (776)
Q Consensus       235 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  314 (776)
                      +.+++.++++++.+. .+|..++.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+.. +++|+.
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN-VPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC-CCCCCE
Confidence            456777777777665 455555567777777777777777666666666666666666666665332222222 444444


Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      |++++|.+.+..+..|..+++|++|++++|.+.                                    +..|..|..++
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~  171 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE------------------------------------RIEDDTFQATT  171 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------------------BCCTTTTTTCT
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC------------------------------------CCChhhhhcCC
Confidence            444444444333333344444444444444444                                    33334444444


Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      +|++|++++|.+.+..   +..+++|+.|++++|.+.+..    .+.+|++|++++|.+...              +.. 
T Consensus       172 ~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~--------------~~~-  229 (597)
T 3oja_B          172 SLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RGP-  229 (597)
T ss_dssp             TCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE--------------ECS-
T ss_pred             cCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc--------------ccc-
Confidence            4444444444444321   223344444555544443211    123444554444443311              110 


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                       ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..|..++                            
T Consensus       230 -~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------  278 (597)
T 3oja_B          230 -VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------------  278 (597)
T ss_dssp             -CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS----------------------------
T ss_pred             -cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc----------------------------
Confidence             124677777777776653  4566677777777777777666665555433                            


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                               +|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|
T Consensus       279 -------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          279 -------------------------RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL  331 (597)
T ss_dssp             -------------------------SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred             -------------------------CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEEC
Confidence                                     67777777777764 45556677888888888888874 4556677888888888


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++|++++. |  +..+++|+.|++++|++.|....  ..+..+....+.+++..|+.+
T Consensus       332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            88888754 2  56678888999999998875433  234556666677888888753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=7.2e-32  Score=304.85  Aligned_cols=313  Identities=22%  Similarity=0.211  Sum_probs=264.8

Q ss_pred             CCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867          284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS  363 (776)
Q Consensus       284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  363 (776)
                      +.+++.+++++|.+. .+|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|+.
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            467888889888887 566666656889999999999999888889999999999999999998 677777778999999


Q ss_pred             EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867          364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI  443 (776)
Q Consensus       364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  443 (776)
                      |++++|.+           ++..+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+...  ..+++|
T Consensus       128 L~L~~n~l-----------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L  194 (597)
T 3oja_B          128 LVLERNDL-----------SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL  194 (597)
T ss_dssp             EECCSSCC-----------CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTC
T ss_pred             EEeeCCCC-----------CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhh
Confidence            99666554           45566668999999999999999999999999999999999999999987532  236789


Q ss_pred             cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867          444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD  523 (776)
Q Consensus       444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  523 (776)
                      +.+++++|.+.+                  +...++|+.|++++|.++...+..   .++|+.|++++|.+++.  ..+.
T Consensus       195 ~~L~l~~n~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          195 FHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             SEEECCSSCCSE------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGG
T ss_pred             hhhhcccCcccc------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhc
Confidence            999888876652                  234568999999999998665432   36899999999999853  3333


Q ss_pred             CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867          524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT  603 (776)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  603 (776)
                      .                                                     +++|+.|+|++|.+.+..|..|..++
T Consensus       252 ~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          252 N-----------------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             G-----------------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             c-----------------------------------------------------CCCCCEEECCCCccCCCCHHHhcCcc
Confidence            3                                                     45899999999999999999999999


Q ss_pred             cCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCccccc
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYE  683 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~  683 (776)
                      +|+.|+|++|.++++ |..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++..   +..++.++.++++
T Consensus       279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence            999999999999975 667788999999999999998 67778889999999999999998653   4567899999999


Q ss_pred             CCCCCCCCC
Q 041867          684 GNTFLCGLP  692 (776)
Q Consensus       684 ~n~~~c~~~  692 (776)
                      +|||.|+|.
T Consensus       354 ~N~~~~~~~  362 (597)
T 3oja_B          354 HNDWDCNSL  362 (597)
T ss_dssp             SSCEEHHHH
T ss_pred             CCCCCChhH
Confidence            999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=6.4e-31  Score=277.12  Aligned_cols=305  Identities=21%  Similarity=0.290  Sum_probs=184.0

Q ss_pred             cCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCE
Q 041867          259 NNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI  338 (776)
Q Consensus       259 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  338 (776)
                      .+++|+.|+++++.+....  .+..+++|++|++++|.+++ ++. + ..+++|++|++++|.+...  +.+..+++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~-~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD-ISP-L-SNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hcccccEEEEeCCccccch--hhhhcCCccEEEccCCcccc-chh-h-hcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            3444455555544444321  24445555555555555542 222 2 2245555555555555432  24566666666


Q ss_pred             EEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCC
Q 041867          339 LDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD  418 (776)
Q Consensus       339 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~  418 (776)
                      |++++|.+. .++.  +..+++|+.|++++|...           . .+..+..+++|++|++++|.+.+..+  +..++
T Consensus       115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~-----------~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~  177 (347)
T 4fmz_A          115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNL-----------S-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT  177 (347)
T ss_dssp             EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTC-----------C-CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred             EECcCCccc-Cchh--hccCCceeEEECCCCCCc-----------c-cccchhhCCCCcEEEecCCCcCCchh--hccCC
Confidence            666666666 4444  345666666665555322           1 22236666667777777666664333  66666


Q ss_pred             CCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhh
Q 041867          419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL  498 (776)
Q Consensus       419 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  498 (776)
                      +|+.|++++|.+.+..+ ...+.+|+.+++++|.+.+             ..+  +..+++|+.|++++|.+++..+  +
T Consensus       178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-------------ITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------CGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCEEEccCCccccccc-ccCCCccceeecccCCCCC-------------Cch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            67777777766654332 2225556666555554431             111  5667778888888887776544  7


Q ss_pred             cCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccc
Q 041867          499 CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVL  578 (776)
Q Consensus       499 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (776)
                      ..+++|++|++++|.+.+.  ..+..                                                     +
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l  264 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------L  264 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------C
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------C
Confidence            7778888888888877643  12222                                                     3


Q ss_pred             cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      ++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..|  +..+++|+.|++
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence            4778888888887754  457777888888888888877777777788888888888888876555  677788888888


Q ss_pred             ccccCc
Q 041867          659 AYNNLS  664 (776)
Q Consensus       659 ~~N~l~  664 (776)
                      ++|+++
T Consensus       341 ~~N~i~  346 (347)
T 4fmz_A          341 ANQVIK  346 (347)
T ss_dssp             SCC---
T ss_pred             hhhccc
Confidence            888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2.6e-30  Score=272.43  Aligned_cols=307  Identities=21%  Similarity=0.318  Sum_probs=256.3

Q ss_pred             CCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCC
Q 041867          280 PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCV  359 (776)
Q Consensus       280 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  359 (776)
                      .+..+++|+.|+++++.+. .++. +. .+++|++|++++|.+.+. +. +..+++|++|++++|.++ .++.  +..++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~  110 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLT  110 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred             cchhcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence            3456789999999999997 4553 33 388999999999999854 33 899999999999999998 6653  56799


Q ss_pred             CCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC
Q 041867          360 NLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH  439 (776)
Q Consensus       360 ~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  439 (776)
                      +|++|++++|.+.           + .+. +..+++|++|++++|...... ..+..+++|++|++++|.+....+ ...
T Consensus       111 ~L~~L~l~~n~i~-----------~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~  175 (347)
T 4fmz_A          111 NLRELYLNEDNIS-----------D-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IAN  175 (347)
T ss_dssp             TCSEEECTTSCCC-----------C-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred             cCCEEECcCCccc-----------C-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hcc
Confidence            9999997777654           2 233 889999999999999766444 448999999999999999886554 334


Q ss_pred             CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCC
Q 041867          440 PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP  519 (776)
Q Consensus       440 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  519 (776)
                      +++|++|++++|.+.+              .+. +..+++|+.|++++|.+++..+  +..+++|++|++++|++.+..+
T Consensus       176 l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIED--------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             CTTCSEEECTTSCCCC--------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCEEEccCCcccc--------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence            8899999888887652              222 7889999999999999997655  8889999999999999986544


Q ss_pred             CCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhh
Q 041867          520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQI  599 (776)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  599 (776)
                        +..                                                     +++|++|++++|.+++.  ..+
T Consensus       239 --~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          239 --LAN-----------------------------------------------------LSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             --GTT-----------------------------------------------------CTTCCEEECCSSCCCCC--GGG
T ss_pred             --hhc-----------------------------------------------------CCCCCEEECCCCccCCC--hhH
Confidence              333                                                     34899999999999864  578


Q ss_pred             ccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCc
Q 041867          600 GNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE  679 (776)
Q Consensus       600 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~  679 (776)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|+.+..+++|+.|++++|++++..|  +..++.++.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            9999999999999999986  468899999999999999999999999999999999999999998766  678999999


Q ss_pred             ccccCCCC
Q 041867          680 SSYEGNTF  687 (776)
Q Consensus       680 ~~~~~n~~  687 (776)
                      +++++|+.
T Consensus       338 L~l~~N~i  345 (347)
T 4fmz_A          338 ADFANQVI  345 (347)
T ss_dssp             ESSSCC--
T ss_pred             eehhhhcc
Confidence            99999975

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.9e-30  Score=266.95  Aligned_cols=287  Identities=22%  Similarity=0.293  Sum_probs=158.8

Q ss_pred             CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA  365 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  365 (776)
                      +++.++++++.+. .+|..+.   ++++.|++++|.+.+..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4666777766665 5555442   46777777777777666667777777777777777776 44444455677777777


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCC--CCCCCCCCCcc
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG--SLPSCFHPLSI  443 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~L  443 (776)
                      +++|++.            .+|..+.  ++|++|++++|.+....+..|..+++|+.|++++|.+..  ..+..+...+|
T Consensus       109 L~~n~l~------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L  174 (332)
T 2ft3_A          109 ISKNHLV------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL  174 (332)
T ss_dssp             CCSSCCC------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred             CCCCcCC------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence            5555543            2333332  677777777777776666667777777777777777652  33333332244


Q ss_pred             cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867          444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD  523 (776)
Q Consensus       444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  523 (776)
                      ++|++++|++.+              +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+.
T Consensus       175 ~~L~l~~n~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~  238 (332)
T 2ft3_A          175 NYLRISEAKLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS  238 (332)
T ss_dssp             SCCBCCSSBCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred             CEEECcCCCCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence            444444443331              111111  3555555555555555545555555555555555555544443333


Q ss_pred             CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867          524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT  603 (776)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  603 (776)
                      .++                                                     +|++|++++|+++ .+|..+..++
T Consensus       239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence            322                                                     4555555555555 4444455555


Q ss_pred             cCCeeecccccccccCccccCCC------CCCCEEECcCCccC--CcCCccccCCCCCCEEecccc
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYN  661 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N  661 (776)
                      +|+.|++++|+++++.+..|...      .+|+.|++++|++.  ...|..|..+++|+.+++++|
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            55555555555555544444332      34455555555554  344444555555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.6e-29  Score=264.10  Aligned_cols=126  Identities=22%  Similarity=0.325  Sum_probs=59.0

Q ss_pred             cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867          287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL  366 (776)
Q Consensus       287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  366 (776)
                      ++.++++++.++ .+|..+.   +.++.|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|++
T Consensus        33 l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence            444444444443 3333221   34455555555555444444555555555555555554 332222334555555554


Q ss_pred             cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccC
Q 041867          367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  431 (776)
Q Consensus       367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~  431 (776)
                      ++|+++            .+|..+.  ++|++|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus       108 s~n~l~------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          108 SKNQLK------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             CSSCCS------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCcCC------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            444332            1222221  45555555555555544445555555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.7e-29  Score=260.64  Aligned_cols=288  Identities=24%  Similarity=0.278  Sum_probs=146.5

Q ss_pred             CcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceee
Q 041867          237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFN  316 (776)
Q Consensus       237 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~  316 (776)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..+..+..+++|++|++++|.++                  
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   91 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------   91 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence            4566666666554 344332   245555555555555554445555555555555555554                  


Q ss_pred             cccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCC
Q 041867          317 NSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWL  396 (776)
Q Consensus       317 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L  396 (776)
                             +..|..|..+++|++|++++|.++ .+|..++   ++|++|++++|+           +++..+..|..+++|
T Consensus        92 -------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~-----------i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           92 -------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNR-----------IRKVPKGVFSGLRNM  149 (332)
T ss_dssp             -------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSC-----------CCCCCSGGGSSCSSC
T ss_pred             -------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCc-----------cCccCHhHhCCCccC
Confidence                   333444444445555555555444 4444332   344444433222           222333344445555


Q ss_pred             CEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          397 QYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       397 ~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      ++|++++|.++.  ..+..+..+ +|+.|++++|.+.+.....+  .+|++|++++|.             +++..+..+
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-------------i~~~~~~~l  213 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK-------------IQAIELEDL  213 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSC-------------CCCCCTTSS
T ss_pred             CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCc-------------CCccCHHHh
Confidence            555555555432  334444444 55555555555544322211  344444333332             223344455


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      .++++|+.|++++|.+++..+..+..+++|+.|++++|++. .+|..+..+                             
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l-----------------------------  263 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL-----------------------------  263 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC-----------------------------
T ss_pred             cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC-----------------------------
Confidence            56666666666666666655556666666666666666665 333333332                             


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccC------ccCCeeeccccccc--ccCccccCCC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNL------TRIQTLNLSHNDLI--GLIPSTFSNL  626 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~~~~l  626 (776)
                                              ++|+.|++++|++++..+..|...      +.|+.|++++|.+.  +..|..|..+
T Consensus       264 ------------------------~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          264 ------------------------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             ------------------------TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             ------------------------ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence                                    256666666666665555555432      45666677776665  4566666667


Q ss_pred             CCCCEEECcCCc
Q 041867          627 KHVESLDLSNNK  638 (776)
Q Consensus       627 ~~L~~L~Ls~N~  638 (776)
                      ++|+.+++++|+
T Consensus       320 ~~L~~l~l~~n~  331 (332)
T 2ft3_A          320 TDRLAIQFGNYK  331 (332)
T ss_dssp             CCSTTEEC----
T ss_pred             chhhhhhccccc
Confidence            777777776664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.9e-30  Score=266.64  Aligned_cols=251  Identities=30%  Similarity=0.453  Sum_probs=167.4

Q ss_pred             ccceeecccccCcc--CCCccCCCCCCCCEEEccC-CcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCC
Q 041867          311 SLYLFNNSMNALDG--SIPSSLGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIP  387 (776)
Q Consensus       311 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~  387 (776)
                      +++.|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..+. .+++|++|++++|.           +++..|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-----------l~~~~p  118 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTN-----------VSGAIP  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEEC-----------CEEECC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCe-----------eCCcCC
Confidence            34444444454444  4455555566666666663 555555555433 46666666643333           334456


Q ss_pred             ccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccc
Q 041867          388 RWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLN  467 (776)
Q Consensus       388 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~  467 (776)
                      ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+                                   
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------------------------  163 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-----------------------------------  163 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-----------------------------------
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-----------------------------------
Confidence            666667777777777777776677777777777777777766653                                   


Q ss_pred             ccCChhhccCc-cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccc
Q 041867          468 GSIPDWVDGLS-QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFS  546 (776)
Q Consensus       468 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (776)
                       .+|..+..++ +|+.|++++|.+++..|..+..++ |+.|++++|++.+..|..+..++                    
T Consensus       164 -~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------  221 (313)
T 1ogq_A          164 -AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------  221 (313)
T ss_dssp             -ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------
T ss_pred             -cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------
Confidence             2333444554 666666666666666666666665 77777777777666655554433                    


Q ss_pred             cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCC
Q 041867          547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL  626 (776)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  626 (776)
                                                       +|+.|++++|.+++.+|. +..+++|++|+|++|.+++..|..|..+
T Consensus       222 ---------------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          222 ---------------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             ---------------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ---------------------------------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence                                             677777777777755554 7778888888888888888888888888


Q ss_pred             CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867          627 KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       627 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  665 (776)
                      ++|+.|++++|++++.+|+. ..+++|+.+++++|+..+
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             cCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            88889999999888888876 778888889999998443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=272.29  Aligned_cols=247  Identities=22%  Similarity=0.252  Sum_probs=142.6

Q ss_pred             CCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccC
Q 041867          336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC  415 (776)
Q Consensus       336 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~  415 (776)
                      ...++.++..++ .+|..+.   ++++.|++++|+           +.+..+..|.++++|++|++++|.+.+..+..|.
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~-----------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQ-----------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN  109 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCC-----------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCc-----------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence            345666666666 6665443   456666644433           3344556666777777777777777766666777


Q ss_pred             CCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccc-cCCcc
Q 041867          416 QLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGE  493 (776)
Q Consensus       416 ~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  493 (776)
                      ++++|++|++++|.+....+..+. +.+|++|++++|++.             ...+..|.++++|+.|++++| .+...
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-------------~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------------SIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-------------ccCHHHhhhCcccCEeCCCCCCCccee
Confidence            777777777777776654443333 344444433333222             233344556666666666663 34444


Q ss_pred             chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867          494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY  573 (776)
Q Consensus       494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (776)
                      .+..|.++++|++|++++|+++.. |. +..                                                 
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------------------------------  205 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP-------------------------------------------------  205 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred             CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence            444566666666666666666532 11 211                                                 


Q ss_pred             ccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCC
Q 041867          574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL  653 (776)
Q Consensus       574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  653 (776)
                          +++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|+++...+..|..+++|
T Consensus       206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence                2356666666666665556666666666666666666666666666666666666666666665555555556666


Q ss_pred             CEEecccccCcc
Q 041867          654 EVFSVAYNNLSG  665 (776)
Q Consensus       654 ~~L~l~~N~l~~  665 (776)
                      +.|++++|++.|
T Consensus       282 ~~L~L~~Np~~C  293 (440)
T 3zyj_A          282 ERIHLHHNPWNC  293 (440)
T ss_dssp             CEEECCSSCEEC
T ss_pred             CEEEcCCCCccC
Confidence            666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.6e-28  Score=256.42  Aligned_cols=268  Identities=22%  Similarity=0.257  Sum_probs=171.7

Q ss_pred             CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA  365 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  365 (776)
                      .++.|++++|.+++..+..+.. +++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..++   ++|++|+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~  127 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR  127 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred             CCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence            4455555555554322222222 455555555555555555666667777777777777776 6665543   5677777


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcccc--CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcc
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI  443 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  443 (776)
                      +++|+           +++..+..|.++++|++|++++|.+..  ..+..|..+++|++|++++|.+......       
T Consensus       128 l~~n~-----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------  189 (330)
T 1xku_A          128 VHENE-----------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-------  189 (330)
T ss_dssp             CCSSC-----------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-------
T ss_pred             CCCCc-----------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-------
Confidence            44443           334455567777777777777777753  5666777788888888888877632211       


Q ss_pred             cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867          444 KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFD  523 (776)
Q Consensus       444 ~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  523 (776)
                                                    +  .++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+.
T Consensus       190 ------------------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          190 ------------------------------L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             ------------------------------C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             ------------------------------c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence                                          1  14566666666666666666666777777777777777665555554


Q ss_pred             CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867          524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT  603 (776)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  603 (776)
                      .++                                                     +|++|++++|+++ .+|..+..++
T Consensus       238 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~  263 (330)
T 1xku_A          238 NTP-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHK  263 (330)
T ss_dssp             GST-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCS
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCC
Confidence            433                                                     6777777777776 5666677777


Q ss_pred             cCCeeecccccccccCccccCC------CCCCCEEECcCCccCC--cCCccccCCCCCCEEeccccc
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN  662 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~  662 (776)
                      +|++|++++|+++++.+..|..      ..+|+.|++++|++..  ..|..|..+++++.+++++|+
T Consensus       264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7888888888777777666643      3678888888888763  566778888888888888874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=5.7e-29  Score=271.61  Aligned_cols=249  Identities=19%  Similarity=0.217  Sum_probs=150.7

Q ss_pred             CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867          337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ  416 (776)
Q Consensus       337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  416 (776)
                      ..++.++..++ .+|..+.   ++++.|++++|           .+++..+..|.++++|++|++++|.+.+..+..|.+
T Consensus        57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n-----------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMEN-----------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC---TTCSEEECCSS-----------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cEEEECCCCcC-ccCCCCC---CCccEEECcCC-----------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            34555555555 4554322   35555553333           233344555666666666666666666555566666


Q ss_pred             CCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCCccc
Q 041867          417 LDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEV  494 (776)
Q Consensus       417 l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~  494 (776)
                      +++|++|++++|.+....+..+. +++|++|++++|++.             ...+..|.++++|+.|++++ |.+....
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------------SIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-------------eeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            66666666666666544444333 444444433333322             23344566777777777777 4455555


Q ss_pred             hhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEec
Q 041867          495 LVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ  574 (776)
Q Consensus       495 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (776)
                      +..|.++++|+.|++++|++.+. | .+..                                                  
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~--------------------------------------------------  216 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTP--------------------------------------------------  216 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------------------------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-c-cccc--------------------------------------------------
Confidence            55677777777777777777643 2 1222                                                  


Q ss_pred             cccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCC
Q 041867          575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE  654 (776)
Q Consensus       575 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  654 (776)
                         +++|++|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++++..+..|..+++|+
T Consensus       217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence               23677777777777766677777777777777777777777777777777777777777777766666666677777


Q ss_pred             EEecccccCcccCC
Q 041867          655 VFSVAYNNLSGEIP  668 (776)
Q Consensus       655 ~L~l~~N~l~~~~p  668 (776)
                      .|++++|++.|...
T Consensus       294 ~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          294 ELHLHHNPWNCDCD  307 (452)
T ss_dssp             EEECCSSCEECSTT
T ss_pred             EEEccCCCcCCCCC
Confidence            77777777765433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-32  Score=302.83  Aligned_cols=368  Identities=16%  Similarity=0.137  Sum_probs=265.2

Q ss_pred             CCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCc----CCCCCCCCCCcCEEEceeccCcccCChhhhccCc-
Q 041867          236 HDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGP----FRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP-  310 (776)
Q Consensus       236 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~-  310 (776)
                      ++|++|+++++++++.....++..+++|+.|++++|.+.+.    .+..+..+++|++|++++|.+.+..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46778888888877655555457888888888888887753    2345666788999999988887555555555455 


Q ss_pred             ---ccceeecccccCcc----CCCccCCCCCCCCEEEccCCcCCCcCchhhhh----cCCCCcEEEccCccccceEecCC
Q 041867          311 ---SLYLFNNSMNALDG----SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQSLALSNNNLQEGLYLNN  379 (776)
Q Consensus       311 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~ls~n~l~~~l~l~~  379 (776)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|++...     
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----  157 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----  157 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence               69999999998874    44778888999999999999887443433332    345799999777665410     


Q ss_pred             CcCCCCCCccccCCCCCCEEeccCCccccCCCcccC-----CCCCCcEEEccccccCCCC----CCCCC-CCcccEEEcC
Q 041867          380 NSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGSL----PSCFH-PLSIKQVHLS  449 (776)
Q Consensus       380 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~----~~~~~-~~~L~~L~l~  449 (776)
                       . ...++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+....    +..+. +++|++|+++
T Consensus       158 -~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  235 (461)
T 1z7x_W          158 -S-CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  235 (461)
T ss_dssp             -G-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             -H-HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence             0 001355667789999999999998765444443     3668999999999887532    22332 6889999888


Q ss_pred             CcccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc----chhhhcCCCCCCEEeCCCCcccCCCCCCCcCC
Q 041867          450 KNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE----VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  525 (776)
Q Consensus       450 ~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  525 (776)
                      +|.+....        +....+..+..+++|+.|++++|.++..    .+..+..+++|++|++++|.+.+..+..+...
T Consensus       236 ~n~l~~~~--------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          236 SNKLGDVG--------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             SSBCHHHH--------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CCcCChHH--------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            87664211        0001123344688999999999999865    46667779999999999998864333222111


Q ss_pred             cccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----Chhhhcc
Q 041867          526 TLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIGN  601 (776)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~  601 (776)
                      .                                                ....++|++|++++|.+++.    ++..+..
T Consensus       308 l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          308 L------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             H------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             h------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            0                                                00124799999999999865    4667788


Q ss_pred             CccCCeeecccccccccCccccCC-----CCCCCEEECcCCccCC----cCCccccCCCCCCEEecccccCccc
Q 041867          602 LTRIQTLNLSHNDLIGLIPSTFSN-----LKHVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE  666 (776)
Q Consensus       602 l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~  666 (776)
                      +++|++|++++|.+++..+..+..     .++|++|++++|+++.    .+|..+..+++|+.|++++|++++.
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            899999999999998765554432     6799999999999986    6788888899999999999999853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=4.3e-32  Score=298.21  Aligned_cols=348  Identities=20%  Similarity=0.142  Sum_probs=213.6

Q ss_pred             CccccCCCCcCEEEcCCCCCcccCChHHhhcCC----CCcEEEccCCCCcC----cCCCCCCCCCCcCEEEceeccCccc
Q 041867          229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNT----KLRQLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGH  300 (776)
Q Consensus       229 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~l~~~  300 (776)
                      +..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.++.    ..+..+..+++|++|++++|.+++.
T Consensus        49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            344556667777777777766555555545555    57777777777764    2355667778888888888877644


Q ss_pred             CChhhhc----cCcccceeecccccCccCC----CccCCCCCCCCEEEccCCcCCCcCchhhhh----cCCCCcEEEccC
Q 041867          301 IPIEIGD----VLPSLYLFNNSMNALDGSI----PSSLGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQSLALSN  368 (776)
Q Consensus       301 ~~~~~~~----~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~ls~  368 (776)
                      .+..+..    ..++|++|++++|.+++..    +..+..+++|++|++++|.+.+..+..+..    ..++|++|++++
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence            3333332    1345777777777766432    344555677777777777765332222222    245777777555


Q ss_pred             ccccceEecCCCcCCCC----CCccccCCCCCCEEeccCCccccCC-----CcccCCCCCCcEEEccccccCCCCCCCCC
Q 041867          369 NNLQEGLYLNNNSLSGK----IPRWLGNLTWLQYIIMPNNHLEGPI-----PVEFCQLDLLQILDISDNNISGSLPSCFH  439 (776)
Q Consensus       369 n~l~~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  439 (776)
                      |.+.           +.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++....    
T Consensus       209 n~l~-----------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----  273 (461)
T 1z7x_W          209 CGVT-----------SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----  273 (461)
T ss_dssp             SCCB-----------TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----
T ss_pred             CCCc-----------HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----
Confidence            5443           21    3445556677777777777665432     2222345666666666665542100    


Q ss_pred             CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcC-----CCCCCEEeCCCCcc
Q 041867          440 PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-----LNQLQLLDLSNNNL  514 (776)
Q Consensus       440 ~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l  514 (776)
                                                  ..++..+..+++|++|++++|.+++..+..+..     .++|+.|++++|.+
T Consensus       274 ----------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          274 ----------------------------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             ----------------------------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ----------------------------HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence                                        013455667788888888888887554444432     36888888888887


Q ss_pred             cCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC
Q 041867          515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP  594 (776)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  594 (776)
                      ++.....+...-                                                 ..+++|++|++++|.+++.
T Consensus       326 ~~~~~~~l~~~l-------------------------------------------------~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          326 TAACCSHFSSVL-------------------------------------------------AQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             BGGGHHHHHHHH-------------------------------------------------HHCSSCCEEECCSSBCHHH
T ss_pred             chHHHHHHHHHH-------------------------------------------------hhCCCccEEEccCCccccc
Confidence            643211111000                                                 1134788888888888755


Q ss_pred             Chhhhcc-----CccCCeeecccccccc----cCccccCCCCCCCEEECcCCccCCcCCcc----cc-CCCCCCEEeccc
Q 041867          595 IPPQIGN-----LTRIQTLNLSHNDLIG----LIPSTFSNLKHVESLDLSNNKLNGKIPHQ----LV-ELKTLEVFSVAY  660 (776)
Q Consensus       595 ~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~-~l~~L~~L~l~~  660 (776)
                      .+..+..     .++|++|++++|.+++    .++..+..+++|++|++++|++++.....    +. ...+|+.|++.+
T Consensus       357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~  436 (461)
T 1z7x_W          357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  436 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence            5554443     6788899999998886    56777778888999999999887532221    11 234688888887


Q ss_pred             ccCcccCC
Q 041867          661 NNLSGEIP  668 (776)
Q Consensus       661 N~l~~~~p  668 (776)
                      +.+....+
T Consensus       437 ~~~~~~~~  444 (461)
T 1z7x_W          437 IYWSEEME  444 (461)
T ss_dssp             CCCCHHHH
T ss_pred             cccCHHHH
Confidence            77764333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.7e-29  Score=259.37  Aligned_cols=287  Identities=22%  Similarity=0.258  Sum_probs=209.2

Q ss_pred             ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867          313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN  392 (776)
Q Consensus       313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~  392 (776)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|...+.++++|++|++++|.+...         +..+..+..
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~   76 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFG   76 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHS
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcc---------cCccccccc
Confidence            45677777776 4454432  57888888888887 77777777778888888666655310         112445566


Q ss_pred             CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      +++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+                                   ..
T Consensus        77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------~~  120 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------------------FS  120 (306)
T ss_dssp             CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------------------TT
T ss_pred             ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------------------ch
Confidence            7778888888877773 45557777777777777777653211                                   13


Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccC-CCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                      .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++                         
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------  175 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-------------------------  175 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------------
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-------------------------
Confidence            46778899999999999998888889999999999999999876 4566665543                         


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES  631 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  631 (776)
                                                  +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus       176 ----------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          176 ----------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             ----------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred             ----------------------------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence                                        8999999999999888888999999999999999999888888899999999


Q ss_pred             EECcCCccCCcCCccccCCC-CCCEEecccccCcccCCC-cccc-ccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867          632 LDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEIPE-WTAQ-FATFNESSYEGNTFLCGLPLPICRSPATMSEASIG  708 (776)
Q Consensus       632 L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~-~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~  708 (776)
                      |++++|++++..|..+..++ +|+.|++++|++++..+. ++.. +...+.+..+.+..       .|..|....+.++.
T Consensus       228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~  300 (306)
T 2z66_A          228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVL  300 (306)
T ss_dssp             EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGG
T ss_pred             eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceee
Confidence            99999999988888888884 899999999999875432 1111 22233344444444       45556655555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=9.3e-29  Score=260.78  Aligned_cols=217  Identities=15%  Similarity=0.105  Sum_probs=122.5

Q ss_pred             CccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCC-CCCC-CCcccEEEcCCcccCcccccccCCc
Q 041867          387 PRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP-SCFH-PLSIKQVHLSKNMLHGQLKRDLSYN  464 (776)
Q Consensus       387 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n  464 (776)
                      +..|.++++|++|++++|.+++..+..|..+++|++|++++|++..... ..+. +++|++|++++|.            
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------  160 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------  160 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------
Confidence            3344444445555555554443333334445555555555554443322 1222 3333333333321            


Q ss_pred             cccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867          465 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF  544 (776)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (776)
                      .+....+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++....+..+..                    
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------  220 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--------------------  220 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--------------------
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh--------------------
Confidence            111233455677777888888888877777777777777888888777764322111111                    


Q ss_pred             cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhc---cCccCCeeeccccccccc---
Q 041867          545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGL---  618 (776)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~---  618 (776)
                                                       +++|+.|++++|.+++..+..+.   ..+.++.++++++.+.+.   
T Consensus       221 ---------------------------------~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          221 ---------------------------------TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             ---------------------------------TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             ---------------------------------cccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence                                             23677777777777765444332   345566666666666542   


Q ss_pred             -CccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          619 -IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       619 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                       +|..+..+++|+.|++++|+++...+..|..+++|+.|++++|++.|..|
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             45566777777777777777774433345677777777777777776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=7.7e-28  Score=248.49  Aligned_cols=246  Identities=22%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             EEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcC---chhhhhcCCCCcEEE
Q 041867          289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI---PEHLAVGCVNLQSLA  365 (776)
Q Consensus       289 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~  365 (776)
                      .++.+++.++ .+|..+.   ++++.|++++|.+....+..|.++++|++|++++|.+. .+   +...+ ++++|++|+
T Consensus        11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L~   84 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYLD   84 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEEE
T ss_pred             EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEEE
Confidence            4555555554 4444332   35555666666555333334555556666666655554 22   23322 355566665


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCC-cccCCCCCCcEEEccccccCCCCCCCCCCCccc
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGSLPSCFHPLSIK  444 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  444 (776)
                      +++|.+.            .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+            
T Consensus        85 Ls~n~i~------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------  140 (306)
T 2z66_A           85 LSFNGVI------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------  140 (306)
T ss_dssp             CCSCSEE------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE------------
T ss_pred             CCCCccc------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc------------
Confidence            5444433            233445555566666666665554433 345555555555555555432            


Q ss_pred             EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCc
Q 041867          445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFD  523 (776)
Q Consensus       445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  523 (776)
                                              ..+..+.++++|+.|++++|.+++ ..+..+..+++|++|++++|++.+..|..+.
T Consensus       141 ------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  196 (306)
T 2z66_A          141 ------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  196 (306)
T ss_dssp             ------------------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ------------------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence                                    222334445556666666665554 3445555555666666666655555454444


Q ss_pred             CCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCc
Q 041867          524 NTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLT  603 (776)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  603 (776)
                      .++                                                     +|++|++++|.+++..+..+..++
T Consensus       197 ~l~-----------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          197 SLS-----------------------------------------------------SLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TCT-----------------------------------------------------TCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCccCccChhhccCcc
Confidence            322                                                     555566666665555555555555


Q ss_pred             cCCeeecccccccccCccccCCCC-CCCEEECcCCccCC
Q 041867          604 RIQTLNLSHNDLIGLIPSTFSNLK-HVESLDLSNNKLNG  641 (776)
Q Consensus       604 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~  641 (776)
                      +|+.|++++|++++..+..+..++ +|+.|++++|++++
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            666666666666555555555552 56666666665553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.3e-27  Score=244.04  Aligned_cols=261  Identities=21%  Similarity=0.226  Sum_probs=188.0

Q ss_pred             CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867          337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ  416 (776)
Q Consensus       337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  416 (776)
                      ++++.+++.++ .+|...   .+++++|++++|.           +++..+..|..+++|++|++++|.+.+..+..|..
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~-----------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNR-----------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSC-----------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCc-----------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            56777777776 666543   3567777744444           33445556677777777777777777666667777


Q ss_pred             CCCCcEEEccccc-cCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccch
Q 041867          417 LDLLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVL  495 (776)
Q Consensus       417 l~~L~~L~ls~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  495 (776)
                      +++|++|++++|. +..                                    ..+..|.++++|++|++++|.+++..+
T Consensus        79 l~~L~~L~l~~n~~l~~------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~  122 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRS------------------------------------VDPATFHGLGRLHTLHLDRCGLQELGP  122 (285)
T ss_dssp             CTTCCEEECCSCTTCCC------------------------------------CCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccCCCEEeCCCCCCccc------------------------------------cCHHHhcCCcCCCEEECCCCcCCEECH
Confidence            7777777777765 432                                    334556778888899999888888878


Q ss_pred             hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEecc
Q 041867          496 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQG  575 (776)
Q Consensus       496 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (776)
                      ..+..+++|++|++++|++.+..+..+..++                                                 
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------  153 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQALPDDTFRDLG-------------------------------------------------  153 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------------------------
T ss_pred             hHhhCCcCCCEEECCCCcccccCHhHhccCC-------------------------------------------------
Confidence            8888888888888888888877666665543                                                 


Q ss_pred             ccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867          576 KVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  655 (776)
Q Consensus       576 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  655 (776)
                          +|++|++++|++++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..++.+..+++|+.
T Consensus       154 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          154 ----NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ----CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence                7888888888888777777888888888888888888888888888888888888888888777777888888888


Q ss_pred             EecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867          656 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGN  709 (776)
Q Consensus       656 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~  709 (776)
                      |++++|++.+..+.. ..+..++......+.+.       |..|....+..+..
T Consensus       230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~-------c~~p~~l~g~~l~~  275 (285)
T 1ozn_A          230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP-------CSLPQRLAGRDLKR  275 (285)
T ss_dssp             EECCSSCEECSGGGH-HHHHHHHHCCSEECCCB-------EEESGGGTTCBGGG
T ss_pred             EeccCCCccCCCCcH-HHHHHHHhcccccCccc-------cCCchHhCCcChhh
Confidence            888888888655541 22334455555555554       45555555554433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=252.58  Aligned_cols=250  Identities=27%  Similarity=0.297  Sum_probs=199.0

Q ss_pred             CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA  365 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  365 (776)
                      ....++.++..++ .+|..+.   ++++.|++++|.+....+..|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            3456777777776 6666553   47788888888887777777888888888888888877 66666666777787777


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ  445 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  445 (776)
                      +++|+           ++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+..+             
T Consensus       119 L~~n~-----------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~-------------  174 (440)
T 3zyj_A          119 LFDNR-----------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-------------  174 (440)
T ss_dssp             CCSSC-----------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------
T ss_pred             CCCCc-----------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc-------------
Confidence            54444           334455567777777777777777776666677777777777777643221             


Q ss_pred             EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCC
Q 041867          446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  525 (776)
Q Consensus       446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  525 (776)
                                            ...+..|.++++|+.|++++|+++...  .+..+++|+.|++++|++.+..|..|..+
T Consensus       175 ----------------------~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          175 ----------------------YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             ----------------------EECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             ----------------------eeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccC
Confidence                                  133456888999999999999999553  58889999999999999998888888775


Q ss_pred             cccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccC
Q 041867          526 TLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRI  605 (776)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  605 (776)
                      +                                                     +|+.|+|++|++++..+..|.++++|
T Consensus       231 ~-----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          231 M-----------------------------------------------------HLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             T-----------------------------------------------------TCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             c-----------------------------------------------------cCCEEECCCCceeEEChhhhcCCCCC
Confidence            5                                                     89999999999999999999999999


Q ss_pred             CeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          606 QTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       606 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      +.|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus       258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999999999999999999999999999873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.7e-27  Score=239.16  Aligned_cols=254  Identities=22%  Similarity=0.248  Sum_probs=159.3

Q ss_pred             ceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccC
Q 041867          313 YLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGN  392 (776)
Q Consensus       313 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~  392 (776)
                      +.++.+++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.           +++..+..|..
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~-----------l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNV-----------LARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-----------CCEECTTTTTT
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCc-----------cceeCHhhcCC
Confidence            45566666665 334333  356777777777776 5555555566777777744443           33445666677


Q ss_pred             CCCCCEEeccCCc-cccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867          393 LTWLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP  471 (776)
Q Consensus       393 l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  471 (776)
                      +++|++|++++|. +....+..|..+++|++|++++|.+.+                                    ..+
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------~~~  122 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------------------------------------LGP  122 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------------------------------------CCT
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE------------------------------------ECH
Confidence            7777777777775 665556667777777777777666553                                    223


Q ss_pred             hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                      ..|.++++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..++                         
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------  177 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------------------  177 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------
T ss_pred             hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------
Confidence            3455666777777777777766666666777777777777777655555554433                         


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES  631 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  631 (776)
                                                  +|++|++++|.+++..|..|..+++|+.|++++|.++++.+..+..+++|+.
T Consensus       178 ----------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          178 ----------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             ----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ----------------------------ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence                                        6777777777777666777777777777777777777666666777777777


Q ss_pred             EECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcc
Q 041867          632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT  671 (776)
Q Consensus       632 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~  671 (776)
                      |++++|++....+.. .....++.+..+.+.+.|..|..+
T Consensus       230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             EECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             EeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            777777766433211 111234444566666666666643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3e-26  Score=249.99  Aligned_cols=249  Identities=22%  Similarity=0.244  Sum_probs=189.0

Q ss_pred             cCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEc
Q 041867          287 LGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLAL  366 (776)
Q Consensus       287 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  366 (776)
                      ...++.++..++ .+|..+.   ++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            456677666666 5565443   46777777777777666677777777777777777776 555555556677777774


Q ss_pred             cCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEE
Q 041867          367 SNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV  446 (776)
Q Consensus       367 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  446 (776)
                      ++|+           ++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|...               
T Consensus       131 ~~n~-----------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l---------------  184 (452)
T 3zyi_A          131 FDNW-----------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL---------------  184 (452)
T ss_dssp             CSSC-----------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------------
T ss_pred             CCCc-----------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------------
Confidence            4443           33344555666677777777777766666666666666666666664321               


Q ss_pred             EcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCc
Q 041867          447 HLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT  526 (776)
Q Consensus       447 ~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  526 (776)
                                          ....+..|.++++|+.|++++|++++.  ..+..+++|+.|++++|++.+..|..|..++
T Consensus       185 --------------------~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          185 --------------------EYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             --------------------CEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             --------------------cccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCcc
Confidence                                113345688899999999999999965  3588899999999999999988888777654


Q ss_pred             ccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCC
Q 041867          527 LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQ  606 (776)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  606 (776)
                                                                           +|+.|++++|++++..+..|..+++|+
T Consensus       243 -----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          243 -----------------------------------------------------SLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             -----------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             -----------------------------------------------------CCCEEEeCCCcCceECHHHhcCCCCCC
Confidence                                                                 899999999999999999999999999


Q ss_pred             eeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          607 TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       607 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      .|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            99999999999999999999999999999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.7e-27  Score=247.10  Aligned_cols=259  Identities=20%  Similarity=0.219  Sum_probs=157.1

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      +|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|++           ++..+..|
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l-----------~~~~~~~~  120 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-----------SNLSSSWF  120 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-----------SSCCHHHH
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-----------CcCCHhHh
Confidence            4444444444444433334444555555555555444 33333333444555555333322           22222334


Q ss_pred             cCCCCCCEEeccCCccccCCC-cccCCCCCCcEEEcccc-ccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCcccc
Q 041867          391 GNLTWLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDN-NISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLN  467 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~ls~n-~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~  467 (776)
                      +++++|++|++++|++....+ ..|..+++|++|++++| .+....+..+. +++|++|++++|++             +
T Consensus       121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-------------~  187 (353)
T 2z80_A          121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-------------Q  187 (353)
T ss_dssp             TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-------------C
T ss_pred             CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-------------C
Confidence            445555555555555543332 24455555555555555 23333333333 44555554433332             2


Q ss_pred             ccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccccc
Q 041867          468 GSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI  547 (776)
Q Consensus       468 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (776)
                      +..|..+..+++|++|++++|.++......+..+++|+.|++++|++.+..+..+....                     
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~---------------------  246 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE---------------------  246 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc---------------------
Confidence            34566778889999999999998866666666789999999999999876554433211                     


Q ss_pred             CCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCC----CChhhhccCccCCeeecccccccccCcccc
Q 041867          548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG----PIPPQIGNLTRIQTLNLSHNDLIGLIPSTF  623 (776)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  623 (776)
                                                   ..+.++.++++++.+.+    .+|..+..+++|+.|++++|+++.+++..|
T Consensus       247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~  297 (353)
T 2z80_A          247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF  297 (353)
T ss_dssp             -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence                                         12357777888877764    467889999999999999999997776668


Q ss_pred             CCCCCCCEEECcCCccCCcCC
Q 041867          624 SNLKHVESLDLSNNKLNGKIP  644 (776)
Q Consensus       624 ~~l~~L~~L~Ls~N~l~~~~~  644 (776)
                      ..+++|++|++++|++.+..|
T Consensus       298 ~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          298 DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCCCCEEEeeCCCccCcCC
Confidence            999999999999999986544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.7e-29  Score=285.20  Aligned_cols=336  Identities=13%  Similarity=0.059  Sum_probs=150.0

Q ss_pred             CCCCCcEEeCCCCccccCcchhHHHHhcCCC-ccEEEccCCC-CCCCCCCcCCcCCCCCCCCCEEEccCCccccc----c
Q 041867           53 HFKSLEHLGMMSTRIALNTNFLQVISESMPS-LKYLSLSYST-LGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----L  126 (776)
Q Consensus        53 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~-L~~L~L~~n~-i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~  126 (776)
                      .+++|++|++++|  .+.+..+..+...+++ |++|++++|. +..   .........+++|++|+|++|.+++.    +
T Consensus       110 ~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l  184 (592)
T 3ogk_B          110 NLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIVTHCRKIKTLLMEESSFSEKDGKWL  184 (592)
T ss_dssp             HCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred             hCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence            4566666666666  4444444444422333 6666666654 111   00001122455666666666665443    2


Q ss_pred             CccccCCCCCCEEeCCCCcCc----ccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccc
Q 041867          127 PWCMTNLTSLRILDVSSNQLT----GSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQ  202 (776)
Q Consensus       127 ~~~~~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  202 (776)
                      +..+..+++|++|++++|.++    +.++. .+.++++|++|++++|.+.+ ++ ..+..+++|++|+++........  
T Consensus       185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~--  259 (592)
T 3ogk_B          185 HELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGM--  259 (592)
T ss_dssp             HHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTC--
T ss_pred             HHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccch--
Confidence            223445566666666666654    12222 33455666666666665553 22 33555666666666542111000  


Q ss_pred             cccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCC-CCC
Q 041867          203 SHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFR-LPI  281 (776)
Q Consensus       203 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~  281 (776)
                                             ...+..+..+++|+.++++++.. ..+|.. +..+++|++|++++|.+++... ..+
T Consensus       260 -----------------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~  314 (592)
T 3ogk_B          260 -----------------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETEDHCTLI  314 (592)
T ss_dssp             -----------------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred             -----------------------HHHHHHhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHH
Confidence                                   01112223333444444443211 122222 1344444444444444332111 112


Q ss_pred             CCCCCcCEEEceeccCcccCChhhhccCcccceeeccc-----------ccCccCC-CccCCCCCCCCEEEccCCcCCCc
Q 041867          282 HSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM-----------NALDGSI-PSSLGNMKFLQILDLSNNHLTGE  349 (776)
Q Consensus       282 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~  349 (776)
                      ..+++|+.|+++ +.+.......+...+++|++|++++           +.+++.. +.....+++|++|+++.|.+++.
T Consensus       315 ~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          315 QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence            344555555554 2222121222222345555555552           3333211 11123356666666666666544


Q ss_pred             CchhhhhcCCCCcEEEccCccccceEecCCCcCCCC-----CCccccCCCCCCEEeccCCc--cccCCCccc-CCCCCCc
Q 041867          350 IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK-----IPRWLGNLTWLQYIIMPNNH--LEGPIPVEF-CQLDLLQ  421 (776)
Q Consensus       350 ~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~-~~l~~L~  421 (776)
                      .+..+...+++|+.|+++++.       ..|.+++.     ++..+.++++|++|++++|.  +++.....+ ..+++|+
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~-------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~  466 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLD-------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR  466 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECS-------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred             HHHHHHhhCCCCcEEEEeecC-------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence            444444446666666654211       12223322     22224456666676665432  333222222 2356677


Q ss_pred             EEEccccccC
Q 041867          422 ILDISDNNIS  431 (776)
Q Consensus       422 ~L~ls~n~l~  431 (776)
                      +|++++|.++
T Consensus       467 ~L~L~~n~l~  476 (592)
T 3ogk_B          467 WMLLGYVGES  476 (592)
T ss_dssp             EEEECSCCSS
T ss_pred             EeeccCCCCC
Confidence            7777666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.1e-27  Score=248.11  Aligned_cols=260  Identities=22%  Similarity=0.197  Sum_probs=145.2

Q ss_pred             cceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc
Q 041867          312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG  391 (776)
Q Consensus       312 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~  391 (776)
                      ++..+++.+.+.......+..+++|++|++++|.++ .++...+..+++|++|++++|.+.           +..+  +.
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~--~~   77 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-----------ETLD--LE   77 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCE-----------EEEE--ET
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCC-----------cchh--hh
Confidence            334444455444333333444556666666666665 444444445666666664444433           1111  55


Q ss_pred             CCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867          392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP  471 (776)
Q Consensus       392 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  471 (776)
                      .+++|++|++++|.+++..     ..++|++|++++|.+.+..+.                                   
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~-----------------------------------  117 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS-----------------------------------  117 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC-----------------------------------
T ss_pred             hcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc-----------------------------------
Confidence            5555666666666555322     224555555555555432221                                   


Q ss_pred             hhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          472 DWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       472 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                          .+++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..                           
T Consensus       118 ----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------  166 (317)
T 3o53_A          118 ----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------------------  166 (317)
T ss_dssp             ----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------
T ss_pred             ----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------
Confidence                2345666666666666555555666666666666666665443332210                           


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCE
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES  631 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  631 (776)
                                               .+++|++|++++|.+++. + ....+++|++|+|++|+++++++. +..+++|+.
T Consensus       167 -------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~  218 (317)
T 3o53_A          167 -------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTW  218 (317)
T ss_dssp             -------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSE
T ss_pred             -------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccE
Confidence                                     023566666666666543 2 222366777777777777755443 666777777


Q ss_pred             EECcCCccCCcCCccccCCCCCCEEecccccCc-ccCCCccccccccCcccccCC
Q 041867          632 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGN  685 (776)
Q Consensus       632 L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~l~~~~~~~n  685 (776)
                      |++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.++
T Consensus       219 L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            777777776 45556667777777777777776 455566666666666666644

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6.6e-26  Score=235.28  Aligned_cols=235  Identities=20%  Similarity=0.291  Sum_probs=186.9

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867          333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV  412 (776)
Q Consensus       333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  412 (776)
                      .++++.|++++|.+. .+|..++. +++|++|++++|.+           + .+|..++.+++|++|++++|.+. .+|.
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l-----------~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~  144 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGL-----------M-ELPDTMQQFAGLETLTLARNPLR-ALPA  144 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCC-----------C-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred             ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCc-----------c-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence            467899999999998 88887764 88999999655554           3 57788888999999999999888 6688


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG  492 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  492 (776)
                      .+..+++|++|++++|++.+..|..+.     ..                      ..+..|.++++|+.|++++|.++ 
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~----------------------~~~~~~~~l~~L~~L~L~~n~l~-  196 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLA-----ST----------------------DASGEHQGLVNLQSLRLEWTGIR-  196 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSE-----EE----------------------C-CCCEEESTTCCEEEEEEECCC-
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHh-----hc----------------------cchhhhccCCCCCEEECcCCCcC-
Confidence            888899999999998877765554321     11                      22334677899999999999988 


Q ss_pred             cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEE
Q 041867          493 EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI  572 (776)
Q Consensus       493 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (776)
                      ..|..+..+++|++|++++|++.+. |..+..                                                
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~------------------------------------------------  227 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSAL-GPAIHH------------------------------------------------  227 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGG------------------------------------------------
T ss_pred             cchHhhcCCCCCCEEEccCCCCCcC-chhhcc------------------------------------------------
Confidence            5667788889999999999988853 333443                                                


Q ss_pred             eccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCC
Q 041867          573 YQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKT  652 (776)
Q Consensus       573 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  652 (776)
                           +++|++|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|+.+..+++
T Consensus       228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                 337888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCEEecccccCc
Q 041867          653 LEVFSVAYNNLS  664 (776)
Q Consensus       653 L~~L~l~~N~l~  664 (776)
                      |+.+++..|.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            888888877665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=4e-28  Score=275.61  Aligned_cols=360  Identities=15%  Similarity=0.111  Sum_probs=154.0

Q ss_pred             CCCCCCEEeCCCCcCccccCCCcCCC-CCC-CcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcC
Q 041867           28 IFPSLKNLSISYCEVNGVVHGQGFPH-FKS-LEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG  105 (776)
Q Consensus        28 ~~~~L~~L~Ls~n~~~~~~~~~~~~~-l~~-L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~  105 (776)
                      .+++|++|+|++|.+.+..+. .+.. +++ |++|++++|. .+.......+..++++|++|+|++|.+++.+.......
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEESCE-EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcCCC-CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            455566666655554432222 2222 223 5555555552 11111122222255556666666555543111101112


Q ss_pred             CCCCCCCCEEEccCCcccc----ccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccc--cccCccc
Q 041867          106 LCSPVHLQELYIGSNDLRG----SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQ--IPISLEP  179 (776)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~  179 (776)
                      +..+++|++|++++|.+++    .++..+.++++|++|++++|.+. .++. .+..+++|++|+++.....  .......
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHH
Confidence            2344555666665555541    22333445555666666655554 3443 4555555666555532111  0001122


Q ss_pred             ccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcCEEEcCCCCCcccCChHHhhc
Q 041867          180 LFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLEN  259 (776)
Q Consensus       180 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  259 (776)
                      +..+++|+.|+++++.                             ...+|..+..+++|++|++++|.+.+.....++..
T Consensus       266 l~~~~~L~~L~l~~~~-----------------------------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMG-----------------------------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             CCCCTTCCEEEETTCC-----------------------------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             hhccccccccCccccc-----------------------------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            3334444444443211                             11233444455555666665555443333333355


Q ss_pred             CCCCcEEEccCCCCcC-cCCCCCCCCCCcCEEEcee-----------ccCcccCChhhhccCcccceeecccccCccCCC
Q 041867          260 NTKLRQLSLVNDSLGG-PFRLPIHSHKRLGMLDISN-----------NNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIP  327 (776)
Q Consensus       260 l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~-----------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  327 (776)
                      +++|+.|++++ .+.. ..+.....+++|++|++++           +.+++.....+...+++|+.|++..+.+++..+
T Consensus       317 ~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          317 CPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             CTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             CcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence            55566655552 2221 1111123345555665552           333322122222234555555555555554333


Q ss_pred             ccCCC-CCCCCEEEcc----CCcCCCc----CchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc-cCCCCCC
Q 041867          328 SSLGN-MKFLQILDLS----NNHLTGE----IPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-GNLTWLQ  397 (776)
Q Consensus       328 ~~~~~-l~~L~~L~l~----~n~l~~~----~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~  397 (776)
                      ..+.. +++|++|+++    .|.+++.    .-...+.++++|++|++++|.-         .+++.....+ ..+++|+
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~---------~l~~~~~~~~~~~~~~L~  466 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG---------GLTDLGLSYIGQYSPNVR  466 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG---------GCCHHHHHHHHHSCTTCC
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC---------CccHHHHHHHHHhCccce
Confidence            33332 5555555554    3444421    0111233455555555443210         0111111112 2245555


Q ss_pred             EEeccCCccccC-CCcccCCCCCCcEEEcccccc
Q 041867          398 YIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNI  430 (776)
Q Consensus       398 ~L~l~~n~i~~~-~~~~~~~l~~L~~L~ls~n~l  430 (776)
                      +|++++|.+++. .+..+.++++|++|++++|.+
T Consensus       467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence            666655555432 222334455555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.1e-24  Score=243.03  Aligned_cols=189  Identities=25%  Similarity=0.214  Sum_probs=128.4

Q ss_pred             CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      +++|+.|++++|.++.+ |.   .+++|++|++++|.+.+...   .+.+|+.|++++|.+.              .+| 
T Consensus       120 l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~--------------~l~-  177 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT--------------SLP-  177 (622)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--------------CCC-
T ss_pred             CCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC--------------CCc-
Confidence            34455555555555432 22   12555555555555553321   1345555555555443              122 


Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG  552 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (776)
                        ..+++|+.|++++|.+++...    .+++|+.|++++|.++...+ .                               
T Consensus       178 --~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~-~-------------------------------  219 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA-L-------------------------------  219 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC-C-------------------------------
T ss_pred             --ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC-C-------------------------------
Confidence              335778888888888875332    24788889999888874321 1                               


Q ss_pred             CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867          553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL  632 (776)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  632 (776)
                                               +++|+.|++++|.+++ +|   ..+++|+.|+|++|.|+.+++    .+++|+.|
T Consensus       220 -------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L  266 (622)
T 3g06_A          220 -------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSL  266 (622)
T ss_dssp             -------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred             -------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEE
Confidence                                     2378899999999985 44   556889999999999986544    56889999


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCcccccc
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA  675 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~  675 (776)
                      +|++|+|+ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus       267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99999998 6788899999999999999999988777665554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=5.6e-25  Score=228.27  Aligned_cols=227  Identities=21%  Similarity=0.263  Sum_probs=193.8

Q ss_pred             CcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCc
Q 041867          309 LPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR  388 (776)
Q Consensus       309 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~  388 (776)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+.            .+|.
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~------------~lp~  144 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR------------ALPA  144 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC------------CCCG
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc------------cCcH
Confidence            468999999999998 77888999999999999999999 8987664 6999999996666553            5788


Q ss_pred             cccCCCCCCEEeccCCccccCCCcccCC---------CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCccccc
Q 041867          389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQ---------LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR  459 (776)
Q Consensus       389 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  459 (776)
                      .+..+++|++|++++|.+.+..|..+..         +++|++|++++|.+.                            
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------------------  196 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----------------------------  196 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC----------------------------
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC----------------------------
Confidence            8999999999999999888888877654         667777777766655                            


Q ss_pred             ccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcch
Q 041867          460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDE  539 (776)
Q Consensus       460 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  539 (776)
                               .+|..+..+++|+.|++++|.+++. +..+..+++|++|++++|++.+..|..+..++             
T Consensus       197 ---------~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-------------  253 (328)
T 4fcg_A          197 ---------SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-------------  253 (328)
T ss_dssp             ---------CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-------------
T ss_pred             ---------cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCC-------------
Confidence                     4456678888999999999999864 44688899999999999999888888777644             


Q ss_pred             hhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccC
Q 041867          540 QFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLI  619 (776)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  619 (776)
                                                              +|++|++++|.+.+.+|..+.++++|+.|+|++|++.+.+
T Consensus       254 ----------------------------------------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          254 ----------------------------------------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             ----------------------------------------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             ----------------------------------------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence                                                    8999999999999899999999999999999999999999


Q ss_pred             ccccCCCCCCCEEECcCCccCC
Q 041867          620 PSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       620 ~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      |..+..+++|+.+++..+.+..
T Consensus       294 P~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGGSCC
T ss_pred             cHHHhhccCceEEeCCHHHHHH
Confidence            9999999999999999887763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.9e-26  Score=250.11  Aligned_cols=231  Identities=22%  Similarity=0.212  Sum_probs=148.9

Q ss_pred             CCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCc
Q 041867          385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYN  464 (776)
Q Consensus       385 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n  464 (776)
                      ..|..|..+++|++|++++|.+.+..+  |..+++|++|++++|.+.+..+    .++|++|++++|.+.+         
T Consensus        49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~---------  113 (487)
T 3oja_A           49 ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR---------  113 (487)
T ss_dssp             CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCC---------
T ss_pred             CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCC---------
Confidence            334444444555555555554443332  4455555555555555443222    1445555444444332         


Q ss_pred             cccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcc
Q 041867          465 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIF  544 (776)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (776)
                          ..+   ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..                    
T Consensus       114 ----~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------------  166 (487)
T 3oja_A          114 ----VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------  166 (487)
T ss_dssp             ----EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--------------------
T ss_pred             ----CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--------------------
Confidence                111   12466777777777777777777777777777777777777655544431                    


Q ss_pred             cccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867          545 FSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS  624 (776)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  624 (776)
                                                      .+++|++|+|++|.+++..  .+..+++|+.|+|++|.+++++|. +.
T Consensus       167 --------------------------------~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~  211 (487)
T 3oja_A          167 --------------------------------SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQ  211 (487)
T ss_dssp             --------------------------------GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GG
T ss_pred             --------------------------------hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-Hc
Confidence                                            0236777888888777552  233578888888888888876554 77


Q ss_pred             CCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCc-ccCCCccccccccCccccc-------CCCCCCCCCC
Q 041867          625 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYE-------GNTFLCGLPL  693 (776)
Q Consensus       625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~l~~~~~~-------~n~~~c~~~~  693 (776)
                      .+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.+..++..       ++++.|.|+.
T Consensus       212 ~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            88888888888888884 5667888888999999999888 4566666777777777665       8899888753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=7.8e-25  Score=222.18  Aligned_cols=87  Identities=24%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCC----eeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCE
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQ----TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV  655 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  655 (776)
                      +|++|++++|++++..+..+..+++|+    .|++++|.++++.+..+.. .+|+.|++++|++++..+..|..+++|+.
T Consensus       150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred             CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence            455555555555544444444444444    4455555554444333332 24555555555554444444444455555


Q ss_pred             EecccccCcccC
Q 041867          656 FSVAYNNLSGEI  667 (776)
Q Consensus       656 L~l~~N~l~~~~  667 (776)
                      |++++|+++|..
T Consensus       229 L~l~~N~~~c~c  240 (276)
T 2z62_A          229 IWLHTNPWDCSC  240 (276)
T ss_dssp             EECCSSCBCCCT
T ss_pred             EEccCCcccccC
Confidence            555555554433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.3e-24  Score=217.65  Aligned_cols=206  Identities=23%  Similarity=0.251  Sum_probs=124.2

Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      ..+.++++++.++. +|..+.  ++++.|++++|.+....+                                    ..|
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~------------------------------------~~~   57 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPS------------------------------------KAF   57 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCT------------------------------------TSS
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCH------------------------------------HHh
Confidence            45667777777663 343332  456666666666654433                                    345


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      .++++|++|++++|.++...+..|..+++|++|++++|++.+..+..|..++                            
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------  109 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV----------------------------  109 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS----------------------------
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc----------------------------
Confidence            5556666666666666655555556666666666666666555544444432                            


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                               +|++|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|+.|++
T Consensus       110 -------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A          110 -------------------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             -------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -------------------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence                                     5666666666666555556666666666666666666655555666666666666


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++|++++..+..|..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            6666665555556666666666666666665555455556666666666666666664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.6e-26  Score=239.24  Aligned_cols=268  Identities=19%  Similarity=0.197  Sum_probs=213.8

Q ss_pred             CcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLA  365 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  365 (776)
                      +++..+++.+.+. ..+..+...+++|+.|++++|.+.+..|..|..+++|++|++++|.+++. +.  +..+++|++|+
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEE
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEE
Confidence            3555667777665 33444555578999999999999988778999999999999999999844 43  56799999999


Q ss_pred             ccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccE
Q 041867          366 LSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ  445 (776)
Q Consensus       366 ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  445 (776)
                      +++|++++                +...++|++|++++|.+.+..+.   .+++|++|++++|.+.+.            
T Consensus        87 Ls~n~l~~----------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~------------  135 (317)
T 3o53_A           87 LNNNYVQE----------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML------------  135 (317)
T ss_dssp             CCSSEEEE----------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSG------------
T ss_pred             CcCCcccc----------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCc------------
Confidence            88887652                22348999999999999876544   357899999999887742            


Q ss_pred             EEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhc-CCCCCCEEeCCCCcccCCCCCCCcC
Q 041867          446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDN  524 (776)
Q Consensus       446 L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~  524 (776)
                                              .+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|++++..+..+  
T Consensus       136 ------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--  189 (317)
T 3o53_A          136 ------------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--  189 (317)
T ss_dssp             ------------------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC--
T ss_pred             ------------------------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc--
Confidence                                    334566788899999999999887777664 68999999999999875522211  


Q ss_pred             CcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCcc
Q 041867          525 TTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR  604 (776)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  604 (776)
                                                                           +++|++|++++|.+++..+ .+..+++
T Consensus       190 -----------------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~  215 (317)
T 3o53_A          190 -----------------------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAG  215 (317)
T ss_dssp             -----------------------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred             -----------------------------------------------------cccCCEEECCCCcCCcchh-hhcccCc
Confidence                                                                 3489999999999996544 5999999


Q ss_pred             CCeeecccccccccCccccCCCCCCCEEECcCCccC-CcCCccccCCCCCCEEecccc-cCcccCCC
Q 041867          605 IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGEIPE  669 (776)
Q Consensus       605 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N-~l~~~~p~  669 (776)
                      |+.|+|++|+++++ |..+..+++|+.|++++|++. +.+|..+..+++|+.+++++| .+++..|.
T Consensus       216 L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          216 VTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999999999964 677899999999999999998 778889999999999999955 56654443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.5e-26  Score=235.39  Aligned_cols=184  Identities=24%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             CCCcCEEEceeccCcccCChhhhccCcccceeecccccCc-cCCCccCC-------CCCCCCEEEccCCcCCCcCchhhh
Q 041867          284 HKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALD-GSIPSSLG-------NMKFLQILDLSNNHLTGEIPEHLA  355 (776)
Q Consensus       284 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~  355 (776)
                      .++|+.+++++|.+  .+|..+..   .|+.|++++|.+. ..+|..+.       .+++|++|++++|.+++.+|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34555666666666  45555443   2566666666653 22333222       455555666665555545554432


Q ss_pred             -hcCCCCcEEEccCccccceEecCCCcCCCCCCccccCC-----CCCCEEeccCCccccCCCcccCCCCCCcEEEccccc
Q 041867          356 -VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNL-----TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  429 (776)
Q Consensus       356 -~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~  429 (776)
                       ..+++|++|++++|++           ++. |..+..+     ++|++|++++|++.+..+..|..+++|++|++++|+
T Consensus       117 ~~~l~~L~~L~Ls~N~l-----------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSW-----------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             SCCSCCCSEEEEESCBC-----------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             HhcCCCccEEEccCCCC-----------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence             3455555555333332           222 3434433     555555555555555554555555555555555554


Q ss_pred             cCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh--hccCccCCEEEcccccCCc---cchhhhcCCCCC
Q 041867          430 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW--VDGLSQLSHLILGHNNLEG---EVLVQLCELNQL  504 (776)
Q Consensus       430 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L  504 (776)
                      +.+..                                  ..+..  +..+++|++|++++|++++   .....+..+++|
T Consensus       185 l~~~~----------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          185 ELGER----------------------------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             TCHHH----------------------------------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             cCcch----------------------------------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence            33210                                  01111  2556666666666666662   222334456666


Q ss_pred             CEEeCCCCcccCCC
Q 041867          505 QLLDLSNNNLHGPI  518 (776)
Q Consensus       505 ~~L~Ls~n~l~~~~  518 (776)
                      ++|++++|++.+..
T Consensus       231 ~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          231 QGLDLSHNSLRDAA  244 (312)
T ss_dssp             SEEECTTSCCCSSC
T ss_pred             CEEECCCCcCCccc
Confidence            66666666665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=3.5e-24  Score=217.89  Aligned_cols=168  Identities=27%  Similarity=0.290  Sum_probs=130.9

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      ..+..|.++++|+.|++++|.+++..+.  ..+++|++|++++|++. .+|..+..                        
T Consensus        46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~------------------------   98 (290)
T 1p9a_G           46 FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQT------------------------   98 (290)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTT------------------------
T ss_pred             cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhcc------------------------
Confidence            4455677788888888888888765443  67788888888888887 34444443                        


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                   +++|++|++++|++++..+..|.++++|++|+|++|+++++++..|..+++
T Consensus        99 -----------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           99 -----------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (290)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             -----------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence                                         337888888888888777788888888888888888888888778888888


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      |+.|+|++|+++...+..|..+++|+.|++++|+++ .+|..+.....++.+++++|||.|+|..
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            888888888888766667788888888888888888 5666666777888888888888888854

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=7.9e-28  Score=273.34  Aligned_cols=440  Identities=13%  Similarity=0.061  Sum_probs=213.2

Q ss_pred             hhccCCCCCCCEEeCCCCcCcccc---CC-----------CcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEE
Q 041867           23 QSIASIFPSLKNLSISYCEVNGVV---HG-----------QGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLS   88 (776)
Q Consensus        23 ~~~~~~~~~L~~L~Ls~n~~~~~~---~~-----------~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~   88 (776)
                      ...+.++++|++|++++|......   |.           .....+++|++|++++|  .+.+..+..+...+++|++|+
T Consensus        59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~  136 (594)
T 2p1m_B           59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM--VVTDDCLELIAKSFKNFKVLV  136 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc--EEcHHHHHHHHHhCCCCcEEe
Confidence            333556666677766665421111   10           01124566777777766  445555555544566777777


Q ss_pred             ccCC-CCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcccc----CCCCCCEEeCCCCcCcccCCcc----cccCCC
Q 041867           89 LSYS-TLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMT----NLTSLRILDVSSNQLTGSISSS----PLIHLT  159 (776)
Q Consensus        89 L~~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~i~~~----~~~~l~  159 (776)
                      +++| .+++   ......+.++++|++|++++|.+++..+..+.    .+++|++|++++|. . .+...    .+..++
T Consensus       137 L~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~  211 (594)
T 2p1m_B          137 LSSCEGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCP  211 (594)
T ss_dssp             EESCEEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCT
T ss_pred             CCCcCCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCC
Confidence            7666 3322   11111223566677777777766544333332    55577777777665 1 22111    123356


Q ss_pred             CCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867          160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE  239 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  239 (776)
                      +|++|++++|...+.+ ...+..+++|++|+++.+....                     ..+.. ..++..+..+++|+
T Consensus       212 ~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~---------------------~~~~~-~~l~~~l~~~~~L~  268 (594)
T 2p1m_B          212 NLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEV---------------------RPDVY-SGLSVALSGCKELR  268 (594)
T ss_dssp             TCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCC---------------------CHHHH-HHHHHHHHTCTTCC
T ss_pred             CCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCcc---------------------chhhH-HHHHHHHhcCCCcc
Confidence            7777777766211111 1234556667777655442100                     00000 01122334444444


Q ss_pred             EE-EcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCC-CCCCCCCcCEEEceeccCcccCChhhhccCcccceeec
Q 041867          240 TV-ELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRL-PIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNN  317 (776)
Q Consensus       240 ~L-~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l  317 (776)
                      .+ .+.+... +.++..+ ..+++|+.|++++|.+++.... .+..+++|+.|++++| +.......+...+++|+.|++
T Consensus       269 ~Ls~~~~~~~-~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          269 CLSGFWDAVP-AYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             EEECCBTCCG-GGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             cccCCcccch-hhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            44 2222111 1222221 3445555555555554322111 1234555555555555 221111122223455666655


Q ss_pred             cc---------ccCccCCCccC-CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCC--
Q 041867          318 SM---------NALDGSIPSSL-GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGK--  385 (776)
Q Consensus       318 ~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~--  385 (776)
                      ..         +.+++.....+ ..+++|+.|+++.|.+++.....+...+++|+.|+++.+...     ..+.+++.  
T Consensus       346 ~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-----~~~~l~~~~~  420 (594)
T 2p1m_B          346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK-----APDYLTLEPL  420 (594)
T ss_dssp             ECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-----CCCTTTCCCT
T ss_pred             ecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-----CcccccCCch
Confidence            22         23322111112 235677777777777764444444445777777776621100     00122211  


Q ss_pred             ---CCccccCCCCCCEEeccCCccccCCCcccCC-CCCCcEEEccccccCCCCCCCC--CCCcccEEEcCCcccCccccc
Q 041867          386 ---IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ-LDLLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKR  459 (776)
Q Consensus       386 ---~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~  459 (776)
                         ++..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+  .+++|++|++++|.+.+.   
T Consensus       421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~---  496 (594)
T 2p1m_B          421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK---  496 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH---
T ss_pred             hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH---
Confidence               112245567777777766 444433333433 6777788887777653322222  156677776666654211   


Q ss_pred             ccCCccccccCChhhccCccCCEEEcccccCCccchhhh-cCCCCCCEEeCCCCc
Q 041867          460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL-CELNQLQLLDLSNNN  513 (776)
Q Consensus       460 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~  513 (776)
                               ........+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       497 ---------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          497 ---------ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             ---------HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             ---------HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence                     111233457888888888888865444444 456777766666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.6e-26  Score=235.32  Aligned_cols=246  Identities=23%  Similarity=0.260  Sum_probs=124.5

Q ss_pred             CCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcccc-------CCCCCCEEeccCC
Q 041867          332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLG-------NLTWLQYIIMPNN  404 (776)
Q Consensus       332 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n  404 (776)
                      ..++|+.|++++|.+  .+|..+...   |+.|++++|.+..          ...+..+.       ++++|++|++++|
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----------~~~~~~~~~~~~~~~~l~~L~~L~L~~n  105 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----------ARIPSRILFGALRVLGISGLQELTLENL  105 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----------EECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----------CCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence            344555556666655  455544432   5555544444321          12333332       4666666666666


Q ss_pred             ccccCCCccc--CCCCCCcEEEccccccCCCCCCCCC-C-----CcccEEEcCCcccCcccccccCCccccccCChhhcc
Q 041867          405 HLEGPIPVEF--CQLDLLQILDISDNNISGSLPSCFH-P-----LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDG  476 (776)
Q Consensus       405 ~i~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~-~-----~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~  476 (776)
                      .+.+..|..+  ..+++|++|++++|.+.+. +..+. .     ++|++|++++|++             ++..+..|.+
T Consensus       106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-------------~~~~~~~~~~  171 (312)
T 1wwl_A          106 EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-------------LNFSCEQVRV  171 (312)
T ss_dssp             BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-------------CCCCTTTCCC
T ss_pred             cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-------------ccchHHHhcc
Confidence            6666666554  6666677777766666644 32221 1     3344443333222             1233345555


Q ss_pred             CccCCEEEcccccCCcc--chhhh--cCCCCCCEEeCCCCcccCCCC---CCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          477 LSQLSHLILGHNNLEGE--VLVQL--CELNQLQLLDLSNNNLHGPIP---PCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       477 l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      +++|++|++++|++.+.  .+..+  ..+++|++|++++|++.+...   ..+..                         
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-------------------------  226 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-------------------------  226 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-------------------------
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-------------------------
Confidence            66666666666665543  12222  555666666666665542110   00000                         


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh-hhhccCccCCeeecccccccccCccccCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP-PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                  +++|++|++++|.+++..| ..+..+++|++|+|++|.++. +|..+.  ++
T Consensus       227 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~  275 (312)
T 1wwl_A          227 ----------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AK  275 (312)
T ss_dssp             ----------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SE
T ss_pred             ----------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc--CC
Confidence                                        2355566666666555443 334445556666666666552 233333  55


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCc
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  664 (776)
                      |+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus       276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            56666666666543 33 555555666666666555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.4e-23  Score=230.14  Aligned_cols=258  Identities=25%  Similarity=0.240  Sum_probs=207.1

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      .++.+++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|+++            .+|.  
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~------------~lp~--   98 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT------------SLPV--   98 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS------------CCCC--
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC------------cCCC--
Confidence            5788888888887 5566554  78999999999988 7776    4788999996666654            2443  


Q ss_pred             cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                       .+++|++|++++|.+++..+    .+++|+.|++++|++......   +++|++|++++|++.+              +
T Consensus        99 -~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~--------------l  156 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS--------------L  156 (622)
T ss_dssp             -CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC--------------C
T ss_pred             -CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC--------------c
Confidence             67899999999999986443    678999999999999875442   4889999888887652              2


Q ss_pred             ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                      |.   .+++|+.|++++|.+++..    ..+++|+.|++++|++++..+ .                             
T Consensus       157 ~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~-~-----------------------------  199 (622)
T 3g06_A          157 PA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT-L-----------------------------  199 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-C-----------------------------
T ss_pred             CC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC-c-----------------------------
Confidence            22   3478999999999999754    457899999999999985332 1                             


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCC
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE  630 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  630 (776)
                                                 +++|+.|++++|.++. +|.   .+++|+.|+|++|.+++++    ..+++|+
T Consensus       200 ---------------------------~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~  244 (622)
T 3g06_A          200 ---------------------------PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----VLPSELK  244 (622)
T ss_dssp             ---------------------------CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----CCCTTCC
T ss_pred             ---------------------------cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----CCCCcCc
Confidence                                       2379999999999984 443   3589999999999999754    4568999


Q ss_pred             EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCC
Q 041867          631 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  689 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c  689 (776)
                      .|++++|+|+ .+|.   .+++|+.|++++|+|+ .+|..+..+++++.+++++|++..
T Consensus       245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            9999999998 4555   5689999999999999 678889999999999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=4.2e-24  Score=216.75  Aligned_cols=210  Identities=24%  Similarity=0.250  Sum_probs=170.0

Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+                                    ..+..
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------~~~~~   71 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------------------IEDGA   71 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------------------ECTTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------------------cCHHH
Confidence            467777788887777766677788888888888877653                                    22334


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      |.++++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+..++                           
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------  124 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---------------------------  124 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT---------------------------
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC---------------------------
Confidence            56677888888888888877777788888888888888888876665565533                           


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCC-ChhhhccCccCCeeecccccccccCccccCCCCCCC--
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP-IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVE--  630 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~--  630 (776)
                                                +|++|++++|.+.+. +|..+..+++|++|++++|+++++.+..|..+++|+  
T Consensus       125 --------------------------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l  178 (276)
T 2z62_A          125 --------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL  178 (276)
T ss_dssp             --------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             --------------------------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence                                      799999999999864 588999999999999999999998888887777777  


Q ss_pred             --EEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867          631 --SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       631 --~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                        .|++++|++++..+..+.. .+|+.|++++|++++..+..+..+++++.+++++||+.|+|+.
T Consensus       179 ~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          179 NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence              8999999999776665554 5899999999999987777778899999999999999999973

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.8e-25  Score=242.31  Aligned_cols=245  Identities=22%  Similarity=0.220  Sum_probs=177.7

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867          333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV  412 (776)
Q Consensus       333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  412 (776)
                      +++|++|++++|.+. .++...+..+++|+.|++++|.+.           +..|  +..+++|++|++++|.+++..+ 
T Consensus        33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~--l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-----------ETLD--LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCE-----------EEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCC-----------CCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence            345666666666666 344444445666666665444433           2222  5566666666666666664322 


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG  492 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  492 (776)
                          .++|+.|++++|.+.+..+..  +++|++|++++|.+.             +..|..+..+++|+.|+|++|.+++
T Consensus        98 ----~~~L~~L~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~-------------~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A           98 ----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKIT-------------MLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             ----CTTCCEEECCSSCCCCEEECC--CSSCEEEECCSSCCC-------------SGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             ----CCCcCEEECcCCcCCCCCccc--cCCCCEEECCCCCCC-------------CCCchhhcCCCCCCEEECCCCCCCC
Confidence                266777777777766554432  356777755555443             4556678889999999999999999


Q ss_pred             cchhhhc-CCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEE
Q 041867          493 EVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY  571 (776)
Q Consensus       493 ~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (776)
                      ..+..+. .+++|+.|+|++|.+++..+..+                                                 
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------------------------------  189 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV-------------------------------------------------  189 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEEECCCC-------------------------------------------------
T ss_pred             cChHHHhhhCCcccEEecCCCcccccccccc-------------------------------------------------
Confidence            8888886 79999999999999986633221                                                 


Q ss_pred             EeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC-CcCCccccCC
Q 041867          572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVEL  650 (776)
Q Consensus       572 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l  650 (776)
                            +++|+.|+|++|.+++..| .+..+++|+.|+|++|.++++ |..+..+++|+.|++++|++. +.+|..+..+
T Consensus       190 ------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          190 ------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             ------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             ------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence                  3489999999999997655 499999999999999999974 667899999999999999998 6778888889


Q ss_pred             CCCCEEecc-------cccCcccCC
Q 041867          651 KTLEVFSVA-------YNNLSGEIP  668 (776)
Q Consensus       651 ~~L~~L~l~-------~N~l~~~~p  668 (776)
                      +.|+.++++       .|+..+..+
T Consensus       262 ~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          262 QRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             CCCcEEeccccccccCCCcccccCC
Confidence            999999987       555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=4.2e-23  Score=208.32  Aligned_cols=187  Identities=24%  Similarity=0.278  Sum_probs=142.2

Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      +++++|++++|.+.+..+..|..+++|++|++++|.+....                                    +..
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~------------------------------------~~~   80 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP------------------------------------AGI   80 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC------------------------------------TTT
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC------------------------------------hhh
Confidence            45666666666666555556667777777777766665322                                    223


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      |.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++                           
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------  133 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------  133 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------
T ss_pred             hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------
Confidence            45566666666666666666666667777788888888877776666665543                           


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                                +|++|++++|.+++..+..|..+++|+.|+|++|.++++.+..|..+++|+.|+
T Consensus       134 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          134 --------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             --------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence                                      788888888888877777788999999999999999988888899999999999


Q ss_pred             CcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      +++|++++..+..|..+++|+.|++++|++.+..+.
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            999999987777888999999999999999876653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=8.5e-27  Score=264.86  Aligned_cols=64  Identities=13%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             CCCCCCEEEccCCccccccCcccc-CCCCCCEEeCCCC-cCccc-CCcccccCCCCCCEEeccCCccc
Q 041867          108 SPVHLQELYIGSNDLRGSLPWCMT-NLTSLRILDVSSN-QLTGS-ISSSPLIHLTSIEKLYLSNNHFQ  172 (776)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-i~~~~~~~l~~L~~L~L~~n~l~  172 (776)
                      .+++|++|+|++|.+++..+..+. .+++|++|++++| .+++. ++. .+.++++|++|++++|.++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccC
Confidence            345566666666655544444443 4566666666665 33311 222 2334556666666665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.4e-22  Score=206.13  Aligned_cols=181  Identities=21%  Similarity=0.190  Sum_probs=133.9

Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+                                      
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------------------   72 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------------------------------------   72 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------------------------------------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------------------------------------
Confidence            345555555555555555556666666666666665542111                                      


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      ...+++|+.|++++|.++ ..|..+..+++|++|++++|++++..+..|..++                           
T Consensus        73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~---------------------------  124 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG---------------------------  124 (290)
T ss_dssp             CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT---------------------------
T ss_pred             CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC---------------------------
Confidence            134566666777777666 3345566777888888888888777666676644                           


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                                +|++|+|++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+
T Consensus       125 --------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G          125 --------------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             --------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             --------------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence                                      788888888888877778888899999999999999988888889999999999


Q ss_pred             CcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867          634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  667 (776)
Q Consensus       634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  667 (776)
                      |++|+++ .+|..+..+++|+.+++++|++.|..
T Consensus       179 L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            9999998 67777788889999999999998743

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.9e-22  Score=203.69  Aligned_cols=187  Identities=24%  Similarity=0.285  Sum_probs=133.4

Q ss_pred             ccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccccc
Q 041867          390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS  469 (776)
Q Consensus       390 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  469 (776)
                      +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+                                    .
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~------------------------------------~  100 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS------------------------------------L  100 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC------------------------------------C
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc------------------------------------c
Confidence            44455555555555555432  245555556666655555542                                    2


Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      .+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++                       
T Consensus       101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------  157 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----------------------  157 (272)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------
T ss_pred             ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------------------
Confidence            233355666777777777777766666677777888888888877766666555533                       


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV  629 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  629 (776)
                                                    +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|
T Consensus       158 ------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          158 ------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             ------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence                                          78888888888887777778888999999999999998888888889999


Q ss_pred             CEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867          630 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  674 (776)
Q Consensus       630 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  674 (776)
                      +.|++++|++.+.       ++.|+.++++.|.++|.+|.+++.+
T Consensus       208 ~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          208 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            9999999988744       4468889999999999988876543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8.4e-22  Score=196.42  Aligned_cols=148  Identities=26%  Similarity=0.291  Sum_probs=131.4

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      ..+..|.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++                      
T Consensus        50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------  107 (251)
T 3m19_A           50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT----------------------  107 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------
T ss_pred             cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC----------------------
Confidence            4555678889999999999999988888899999999999999999987777776644                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                     +|++|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++
T Consensus       108 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A          108 -------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             -------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             -------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence                                           8999999999999888888899999999999999999988888999999


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      |++|+|++|++++..+..+..+++|+.|++++|++++....
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99999999999988888899999999999999999976333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=8.2e-22  Score=196.52  Aligned_cols=162  Identities=24%  Similarity=0.288  Sum_probs=151.6

Q ss_pred             ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      ++++.|++++|.+++..+..|..+++|++|++++|++.+..+..|..++                               
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------   83 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------------------------------   83 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------------------------------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------------------------------
Confidence            5899999999999999998999999999999999999988888777654                               


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                            +|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|
T Consensus        84 ----------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A           84 ----------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             ----------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence                                  8999999999999888899999999999999999999998888999999999999999


Q ss_pred             ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC-CC
Q 041867          638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG-LP  692 (776)
Q Consensus       638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~-~~  692 (776)
                      ++++..+..|..+++|+.|++++|++++..+..+..+++++.+++++|+|.|+ |.
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            99988888899999999999999999988888888999999999999999998 54

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.4e-21  Score=197.27  Aligned_cols=204  Identities=23%  Similarity=0.225  Sum_probs=153.7

Q ss_pred             CCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          395 WLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      ++..+++.++.+...  ..+..+++|+.|++++|.+... +....+++|++|++++|.+.+               ...+
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~---------------~~~l   81 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD---------------ISAL   81 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC---------------CGGG
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC---------------chhh
Confidence            444556666655533  2355788999999999998743 333447788888777776541               1356


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      ..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..++                            
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------------  133 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----------------------------  133 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------------
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC----------------------------
Confidence            7788888888888888877777778888888888888888877666665544                            


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                               +|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus       134 -------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          134 -------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             -------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             -------------------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence                                     7888888888888777777788888888888888888777777888888888888


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      ++|++++..|..+..+++|+.|++++|++.|.+|.
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            88888877777778888888888888888776553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.6e-21  Score=191.50  Aligned_cols=86  Identities=26%  Similarity=0.265  Sum_probs=44.0

Q ss_pred             CCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccC-CccccCCCcc
Q 041867          335 FLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN-NHLEGPIPVE  413 (776)
Q Consensus       335 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~  413 (776)
                      +|++|++++|+++ .++...+.++++|++|++++|+          .++...+.+|.++++|++|++++ |.+++..+..
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~----------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV----------TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCS----------SCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCC----------CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            5556666666655 4554444455555555533332          02223333455555555555555 5555444455


Q ss_pred             cCCCCCCcEEEccccccC
Q 041867          414 FCQLDLLQILDISDNNIS  431 (776)
Q Consensus       414 ~~~l~~L~~L~ls~n~l~  431 (776)
                      |.++++|++|++++|.+.
T Consensus       101 f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             EECCTTCCEEEEEEECCC
T ss_pred             hCCCCCCCEEeCCCCCCc
Confidence            555555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.2e-22  Score=214.48  Aligned_cols=87  Identities=18%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             ccceEEccCCcCCCC----Chhhhcc-CccCCeeecccccccccCc----cccCCCCCCCEEECcCCccCCcC-------
Q 041867          580 LLSGLDLSCNKLIGP----IPPQIGN-LTRIQTLNLSHNDLIGLIP----STFSNLKHVESLDLSNNKLNGKI-------  643 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~-------  643 (776)
                      +|++|+|++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|+.|++++|.+....       
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            455566666655532    2333433 2366666666666655433    23455566666666666644322       


Q ss_pred             CccccCCCCCCEEecccccCccc
Q 041867          644 PHQLVELKTLEVFSVAYNNLSGE  666 (776)
Q Consensus       644 ~~~l~~l~~L~~L~l~~N~l~~~  666 (776)
                      ++.+..+++|+.||+++|++...
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence            23455566666777777766644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=7.8e-21  Score=195.29  Aligned_cols=80  Identities=20%  Similarity=0.399  Sum_probs=42.9

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      +|+.|++++|.+++..+  +..+++|+.|++++|.++++.+  +..+++|+.|++++|++++..+  +..+++|+.|+++
T Consensus       152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~  225 (308)
T 1h6u_A          152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence            45555555555553322  5555555555555555554432  5555556666666665553332  5555566666666


Q ss_pred             cccCcc
Q 041867          660 YNNLSG  665 (776)
Q Consensus       660 ~N~l~~  665 (776)
                      +|++++
T Consensus       226 ~N~i~~  231 (308)
T 1h6u_A          226 NQTITN  231 (308)
T ss_dssp             EEEEEC
T ss_pred             CCeeec
Confidence            666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.6e-21  Score=189.55  Aligned_cols=176  Identities=21%  Similarity=0.283  Sum_probs=99.5

Q ss_pred             ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      ++++.|++++|.+++..+..|..+++|+.|+|++|++.+..|..|..++                               
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-------------------------------   80 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-------------------------------   80 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-------------------------------
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-------------------------------
Confidence            4566666666666665555666666666666666666655555555433                               


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                            +|++|+|++|.+++..+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|
T Consensus        81 ----------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           81 ----------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             ----------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence                                  5666666666666555555566666666666666666665666666666666666666


Q ss_pred             ccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867          638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN  714 (776)
Q Consensus       638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~  714 (776)
                      ++++..+..|..+++|+.|++++|++.+..+     +..+..+ +..++..-  ....|..|....+..+.....++
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~-----l~~l~~~-l~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~  207 (220)
T 2v9t_B          139 KLQTIAKGTFSPLRAIQTMHLAQNPFICDCH-----LKWLADY-LHTNPIET--SGARCTSPRRLANKRIGQIKSKK  207 (220)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCEECSGG-----GHHHHHH-HHHCCCBC--SCCBEEESGGGTTCBGGGSCGGG
T ss_pred             cCCEECHHHHhCCCCCCEEEeCCCCcCCCCc-----cHHHHHH-HHhCCCCc--cCCCcCCchHHcCCchhhCCHHH
Confidence            6665555556666666666666666654222     1111111 11111110  11268888888777665555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.7e-21  Score=190.38  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             eEEccCC-cCCCCChhhhccCccCC-eeecccccccccCccccCCCCCCCEEECcCCc-cCCcCCccccCC-CCCCEEec
Q 041867          583 GLDLSCN-KLIGPIPPQIGNLTRIQ-TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK-LNGKIPHQLVEL-KTLEVFSV  658 (776)
Q Consensus       583 ~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~l  658 (776)
                      +|++++| .+++..+..|.++++|+ .|++++|+++.+.+..|.. ++|+.|++++|+ ++...+..|..+ ++|+.|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            4455554 44444444444455555 5555555554443333433 445555555552 444444444444 45555555


Q ss_pred             ccccCc
Q 041867          659 AYNNLS  664 (776)
Q Consensus       659 ~~N~l~  664 (776)
                      ++|+++
T Consensus       213 ~~N~l~  218 (239)
T 2xwt_C          213 SQTSVT  218 (239)
T ss_dssp             TTCCCC
T ss_pred             CCCccc
Confidence            555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.8e-23  Score=220.66  Aligned_cols=250  Identities=17%  Similarity=0.185  Sum_probs=165.5

Q ss_pred             CCccCCCCCCCCEEEccCCcCCCcCchhh---hhcCCCCcEEEccCccccceEecCCCcCCCCCCccc-------cCCCC
Q 041867          326 IPSSLGNMKFLQILDLSNNHLTGEIPEHL---AVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL-------GNLTW  395 (776)
Q Consensus       326 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~-------~~l~~  395 (776)
                      ++..+..+++|++|++++|.+.+..+..+   +..+++|++|++++|.+.        .+.+.+|..+       ..+++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------RVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------SCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------ccccchhHHHHHHHHHHhhCCc
Confidence            34445556666777777766653322221   224566666665554332        2233333333       56677


Q ss_pred             CCEEeccCCcccc----CCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCC
Q 041867          396 LQYIIMPNNHLEG----PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIP  471 (776)
Q Consensus       396 L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~  471 (776)
                      |++|++++|.+..    .++..+..+++|++|++++|.+....+.                                .++
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------------------------~l~  143 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------------------------KIA  143 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------------------------HHH
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------------------------HHH
Confidence            7777777777765    2455566677777777777766421111                                112


Q ss_pred             hhhccC---------ccCCEEEcccccCCc-cch---hhhcCCCCCCEEeCCCCcccC-----CCCCCCcCCcccccccC
Q 041867          472 DWVDGL---------SQLSHLILGHNNLEG-EVL---VQLCELNQLQLLDLSNNNLHG-----PIPPCFDNTTLYESYSN  533 (776)
Q Consensus       472 ~~~~~l---------~~L~~L~L~~n~l~~-~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~~~~~~~  533 (776)
                      ..+..+         ++|+.|++++|+++. ..+   ..+..+++|++|++++|++..     ..+..+..         
T Consensus       144 ~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---------  214 (386)
T 2ca6_A          144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------  214 (386)
T ss_dssp             HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG---------
T ss_pred             HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc---------
Confidence            223333         788888888888873 233   356678888888888888762     12222322         


Q ss_pred             CCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCC----CCChhhhccCccCCeee
Q 041867          534 SSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI----GPIPPQIGNLTRIQTLN  609 (776)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~  609 (776)
                                                                  +++|+.|+|++|.++    ..+|..+..+++|+.|+
T Consensus       215 --------------------------------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          215 --------------------------------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             --------------------------------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence                                                        347889999999885    46778889999999999


Q ss_pred             ccccccccc----Ccccc--CCCCCCCEEECcCCccCC----cCCccc-cCCCCCCEEecccccCcccCC
Q 041867          610 LSHNDLIGL----IPSTF--SNLKHVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       610 Ls~N~l~~~----~~~~~--~~l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      |++|.+++.    ++..+  ..+++|+.|+|++|.++.    .+|..+ ..+++|+.|++++|++++..+
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999876    45666  348999999999999997    477776 568999999999999997664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=9.7e-21  Score=195.24  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             cCCCCCCccc--cCCCCCCEEeccCCccccCCC----cccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCccc
Q 041867          381 SLSGKIPRWL--GNLTWLQYIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNML  453 (776)
Q Consensus       381 ~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l  453 (776)
                      .+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+. +++|++|++++|++
T Consensus       102 ~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          102 KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred             EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence            3334555555  566666666666666665433    2344566666666666666544443332 33444443333332


Q ss_pred             CcccccccCCccccccCChhhccCccCCEEEcccccCCccchh---hhcCCCCCCEEeCCCCcccCCCCCC
Q 041867          454 HGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV---QLCELNQLQLLDLSNNNLHGPIPPC  521 (776)
Q Consensus       454 ~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~  521 (776)
                      .+....         ..+..+..+++|++|++++|+++.....   .+..+++|++|++++|++.+..|..
T Consensus       182 ~~~~~~---------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          182 LGERGL---------MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             CHHHHH---------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             ccchhh---------hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            210000         0111223455555555555555422111   1344455555555555555444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=7.2e-22  Score=208.47  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=86.6

Q ss_pred             hhhccCc-cCCEEEcccccCCccchhh----hcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccc
Q 041867          472 DWVDGLS-QLSHLILGHNNLEGEVLVQ----LCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFF  545 (776)
Q Consensus       472 ~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (776)
                      ..+..++ +|++|+|++|++++..+..    +..+ ++|++|++++|++.+.....+...-                   
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l-------------------  220 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF-------------------  220 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH-------------------
Confidence            4445555 8888888888888766543    3445 5899999999988753221111100                   


Q ss_pred             ccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCCh----hhhccCccCCeeecccccccccCc-
Q 041867          546 SIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIP----PQIGNLTRIQTLNLSHNDLIGLIP-  620 (776)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-  620 (776)
                                                   ....++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.++.+ 
T Consensus       221 -----------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~  271 (362)
T 3goz_A          221 -----------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE  271 (362)
T ss_dssp             -----------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred             -----------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence                                         0002378899999999887655    334677899999999998655433 


Q ss_pred             ------cccCCCCCCCEEECcCCccCCcCCc
Q 041867          621 ------STFSNLKHVESLDLSNNKLNGKIPH  645 (776)
Q Consensus       621 ------~~~~~l~~L~~L~Ls~N~l~~~~~~  645 (776)
                            ..+..+++|+.||+++|++....+.
T Consensus       272 ~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             HHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             HHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence                  4677889999999999999866443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=9.7e-21  Score=195.24  Aligned_cols=205  Identities=20%  Similarity=0.223  Sum_probs=140.4

Q ss_pred             CCCCCEEeccCCccccCCCccc--CCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEF--CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                      +++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+..                                .
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------------------~  137 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------------------A  137 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------------------H
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------------------H
Confidence            4568899999999988888887  88889999999999887532210                                0


Q ss_pred             ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCC---C-CCCCcCCcccccccCCCCcchhhhcccc
Q 041867          471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGP---I-PPCFDNTTLYESYSNSSSLDEQFEIFFS  546 (776)
Q Consensus       471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (776)
                      ...+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+.   . +..+..                      
T Consensus       138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------  195 (310)
T 4glp_A          138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK----------------------  195 (310)
T ss_dssp             HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------
T ss_pred             HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------
Confidence            12234567777777777777777777777777777777777776431   1 111122                      


Q ss_pred             cCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChh----hhccCccCCeeecccccccccCccc
Q 041867          547 IESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPP----QIGNLTRIQTLNLSHNDLIGLIPST  622 (776)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~  622 (776)
                                                     +++|++|+|++|+++. ++.    .+..+++|++|+|++|++++..|..
T Consensus       196 -------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          196 -------------------------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             -------------------------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             -------------------------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence                                           3367777777777762 232    2466777888888888887776666


Q ss_pred             cCCC---CCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCC
Q 041867          623 FSNL---KHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL  688 (776)
Q Consensus       623 ~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~  688 (776)
                      +..+   ++|++|+|++|+++ .+|..+.  ++|+.|++++|++++. |. +..++.++.+++++|++.
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            6655   57888888888887 4555553  6788888888887753 33 456677777778777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=7.8e-21  Score=184.72  Aligned_cols=138  Identities=20%  Similarity=0.237  Sum_probs=102.9

Q ss_pred             ccCCEEEcccccCCccch-hhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867          478 SQLSHLILGHNNLEGEVL-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK  556 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (776)
                      +.++.|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..++                              
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------------------------------   81 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------------------------   81 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT------------------------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC------------------------------
Confidence            345778888888776643 4467777788888888877776666666543                              


Q ss_pred             cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                             +|++|+|++|.+++..+..|..+++|++|+|++|+++++.|..|..+++|+.|+|++
T Consensus        82 -----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  138 (220)
T 2v70_A           82 -----------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD  138 (220)
T ss_dssp             -----------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred             -----------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence                                   677788888887777777777777888888888887777777777777788888888


Q ss_pred             CccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      |++++..|..|..+++|+.|++++|++.|..+
T Consensus       139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          139 NQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            87777777777777777888887777776544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=6e-20  Score=192.66  Aligned_cols=225  Identities=21%  Similarity=0.143  Sum_probs=121.9

Q ss_pred             CCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE-EeccCCccccCCCc
Q 041867          334 KFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY-IIMPNNHLEGPIPV  412 (776)
Q Consensus       334 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~i~~~~~~  412 (776)
                      +++++|+|++|+|+ .+|...|.++++|++|++++|++.+.          ..+.+|.+++++++ +.+++|++..+.++
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~----------i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCE----------ECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCc----------cChhHhhcchhhhhhhcccCCcccccCch
Confidence            34555555555555 55555555555555555444433210          12234555555543 44445666656666


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCC
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLE  491 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~  491 (776)
                      .|..+++|++|++++|++....+..                                    +....++..+++.+ +.+.
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~------------------------------------~~~~~~l~~l~l~~~~~i~  142 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVH------------------------------------KIHSLQKVLLDIQDNINIH  142 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCT------------------------------------TCCBSSCEEEEEESCTTCC
T ss_pred             hhhhccccccccccccccccCCchh------------------------------------hcccchhhhhhhccccccc
Confidence            6666666777766666665433322                                    22223344444433 3444


Q ss_pred             ccchhhhcCCC-CCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867          492 GEVLVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV  570 (776)
Q Consensus       492 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (776)
                      ...+..|..+. .++.|++++|+|+.+.+..|..                                              
T Consensus       143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~----------------------------------------------  176 (350)
T 4ay9_X          143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG----------------------------------------------  176 (350)
T ss_dssp             EECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT----------------------------------------------
T ss_pred             cccccchhhcchhhhhhccccccccCCChhhccc----------------------------------------------
Confidence            44444444443 4666677777666554444432                                              


Q ss_pred             EEeccccccccceEEccC-CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccC
Q 041867          571 YIYQGKVLSLLSGLDLSC-NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE  649 (776)
Q Consensus       571 ~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  649 (776)
                              .+|++|++++ |.++.+.+++|.++++|++|+|++|+|+.+++..|.   +|+.|.+.++.--..+| .+..
T Consensus       177 --------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~  244 (350)
T 4ay9_X          177 --------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEK  244 (350)
T ss_dssp             --------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTT
T ss_pred             --------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cchh
Confidence                    1466677753 555555555677777777777777777766655544   34444443333233455 3666


Q ss_pred             CCCCCEEecccccC
Q 041867          650 LKTLEVFSVAYNNL  663 (776)
Q Consensus       650 l~~L~~L~l~~N~l  663 (776)
                      +++|+.++++++.-
T Consensus       245 l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          245 LVALMEASLTYPSH  258 (350)
T ss_dssp             CCSCCEEECSCHHH
T ss_pred             CcChhhCcCCCCcc
Confidence            77777777765543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.5e-19  Score=185.77  Aligned_cols=194  Identities=24%  Similarity=0.339  Sum_probs=125.3

Q ss_pred             CCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCC
Q 041867          331 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPI  410 (776)
Q Consensus       331 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~  410 (776)
                      ..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.           +. +. +..+++|++|++++|.+.+. 
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~-----------~~-~~-~~~l~~L~~L~L~~n~l~~~-  100 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQIT-----------DL-AP-LKNLTKITELELSGNPLKNV-  100 (308)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCC-----------CC-GG-GTTCCSCCEEECCSCCCSCC-
T ss_pred             HHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCC-----------CC-hh-HccCCCCCEEEccCCcCCCc-
Confidence            34566667777766666 4542  334666666665544433           22 22 66666666666666666643 


Q ss_pred             CcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccC
Q 041867          411 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL  490 (776)
Q Consensus       411 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  490 (776)
                       ..+..+++|++|++++|.+.+.                                     + .+..+++|+.|++++|.+
T Consensus       101 -~~~~~l~~L~~L~l~~n~l~~~-------------------------------------~-~l~~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A          101 -SAIAGLQSIKTLDLTSTQITDV-------------------------------------T-PLAGLSNLQVLYLDLNQI  141 (308)
T ss_dssp             -GGGTTCTTCCEEECTTSCCCCC-------------------------------------G-GGTTCTTCCEEECCSSCC
T ss_pred             -hhhcCCCCCCEEECCCCCCCCc-------------------------------------h-hhcCCCCCCEEECCCCcc
Confidence             2466666666666666665521                                     1 155667777777777777


Q ss_pred             CccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceE
Q 041867          491 EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIV  570 (776)
Q Consensus       491 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (776)
                      ++..+  +..+++|+.|++++|++.+..+  +..                                              
T Consensus       142 ~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~----------------------------------------------  171 (308)
T 1h6u_A          142 TNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN----------------------------------------------  171 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------------------------
T ss_pred             CcCcc--ccCCCCccEEEccCCcCCCChh--hcC----------------------------------------------
Confidence            65543  6677777777777777764333  333                                              


Q ss_pred             EEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          571 YIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       571 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                             +++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++++
T Consensus       172 -------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          172 -------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             -------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence                   2367788888888775433  7778888888888888887653  7778888888888888863

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1e-21  Score=205.66  Aligned_cols=90  Identities=18%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             cccceEEccCCc-CCCCChhhhccCccCCeeeccccc-ccccCccccCCCCCCCEEECcCCccCCcCCccccCC-CCCCE
Q 041867          579 SLLSGLDLSCNK-LIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEV  655 (776)
Q Consensus       579 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~  655 (776)
                      ++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.   +.+..+ .+++.
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~  297 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPH  297 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTT
T ss_pred             CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcc
Confidence            367777777776 555556667777777777777774 22222224666777777777777 332   222222 23555


Q ss_pred             EecccccCcccCCCccc
Q 041867          656 FSVAYNNLSGEIPEWTA  672 (776)
Q Consensus       656 L~l~~N~l~~~~p~~~~  672 (776)
                      |++++|++++..|..+.
T Consensus       298 L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          298 LQINCSHFTTIARPTIG  314 (336)
T ss_dssp             SEESCCCSCCTTCSSCS
T ss_pred             eEEecccCccccCCccc
Confidence            56777777777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.2e-19  Score=190.41  Aligned_cols=204  Identities=20%  Similarity=0.180  Sum_probs=143.2

Q ss_pred             CEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEcc
Q 041867          288 GMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS  367 (776)
Q Consensus       288 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls  367 (776)
                      +.++.+++.++ .+|..+.   +++++|++++|+|+...+.+|.++++|++|+|++|++.+.+|..+|.+++++.++.. 
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-
Confidence            46777888887 7777653   588999999999996666789999999999999999876889888888888876432 


Q ss_pred             CccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccc-cccCCCCCCCCC--CCccc
Q 041867          368 NNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD-NNISGSLPSCFH--PLSIK  444 (776)
Q Consensus       368 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~--~~~L~  444 (776)
                               +..|+++...+.+|..+++|++|++++|++....+..+....++..+++.+ +.+....+..|.  ...++
T Consensus        87 ---------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           87 ---------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  157 (350)
T ss_dssp             ---------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             ---------ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence                     344556667788999999999999999999988877888888899999876 456655555444  23455


Q ss_pred             EEEcCCcccCcccccccCCccccccCChhhccCccCCEEEccc-ccCCccchhhhcCCCCCCEEeCCCCcccCCCC
Q 041867          445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP  519 (776)
Q Consensus       445 ~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  519 (776)
                      .|++++|+++             .+.+..| ...+|+.+++.+ |.++.+.+..|.++++|++|++++|+++...+
T Consensus       158 ~L~L~~N~i~-------------~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~  219 (350)
T 4ay9_X          158 ILWLNKNGIQ-------------EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  219 (350)
T ss_dssp             EEECCSSCCC-------------EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred             hhcccccccc-------------CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence            5555444443             1222222 334566666653 44554444555666666666666666654443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=3.3e-20  Score=195.40  Aligned_cols=161  Identities=23%  Similarity=0.193  Sum_probs=111.4

Q ss_pred             cCCEEEcccccCCccchhhhc-CCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          479 QLSHLILGHNNLEGEVLVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       479 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      .++.|+|++|++++..+..|. .+++|+.|+|++|+|.+..+..|..++                               
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-------------------------------   88 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-------------------------------   88 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-------------------------------
Confidence            466677777777766666665 677777777777777766666665533                               


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                            +|++|+|++|++++..+..|..+++|+.|+|++|+++++.+..|.++++|+.|+|++|
T Consensus        89 ----------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           89 ----------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             ----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence                                  6777777777777666667777777777777777777777777777777777777777


Q ss_pred             ccCCcCCccc---cCCCCCCEEecccccCcccCCCccccccc--cCcccccCCCCCCCCC
Q 041867          638 KLNGKIPHQL---VELKTLEVFSVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLP  692 (776)
Q Consensus       638 ~l~~~~~~~l---~~l~~L~~L~l~~N~l~~~~p~~~~~~~~--l~~~~~~~n~~~c~~~  692 (776)
                      +++...+..|   ..+++|+.|+|++|+|+...+..+..++.  ++.+++++|||.|+|+
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            7775554444   45777777777777777554455555554  3667778888888775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1e-21  Score=209.56  Aligned_cols=240  Identities=20%  Similarity=0.234  Sum_probs=167.8

Q ss_pred             CcccceeecccccCccCC----CccCCCCCCCCEEEccCCcC---CCcCchhh------hhcCCCCcEEEccCccccceE
Q 041867          309 LPSLYLFNNSMNALDGSI----PSSLGNMKFLQILDLSNNHL---TGEIPEHL------AVGCVNLQSLALSNNNLQEGL  375 (776)
Q Consensus       309 l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~~~~------~~~l~~L~~L~ls~n~l~~~l  375 (776)
                      +++|+.|++++|.+....    +..+..+++|++|++++|.+   .+.+|..+      +..+++|++|++++|.+.   
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~---  107 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---  107 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC---
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC---
Confidence            567777777777776542    33467788899999988644   44555554      346889999996666543   


Q ss_pred             ecCCCcCCC----CCCccccCCCCCCEEeccCCccccCCCcccC----CC---------CCCcEEEccccccCCCCCCCC
Q 041867          376 YLNNNSLSG----KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFC----QL---------DLLQILDISDNNISGSLPSCF  438 (776)
Q Consensus       376 ~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~l---------~~L~~L~ls~n~l~~~~~~~~  438 (776)
                              +    .++..+..+++|++|++++|.+....+..+.    .+         ++|++|++++|++......  
T Consensus       108 --------~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--  177 (386)
T 2ca6_A          108 --------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--  177 (386)
T ss_dssp             --------TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--
T ss_pred             --------HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--
Confidence                    3    2566778899999999999998754444433    33         7788888888776521000  


Q ss_pred             CCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc-----cchhhhcCCCCCCEEeCCCCc
Q 041867          439 HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG-----EVLVQLCELNQLQLLDLSNNN  513 (776)
Q Consensus       439 ~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~  513 (776)
                                                    .+...+..+++|+.|++++|.++.     ..+..+..+++|+.|+|++|.
T Consensus       178 ------------------------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          178 ------------------------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             ------------------------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             ------------------------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence                                          112356677888888888888873     233367788888888888888


Q ss_pred             cc----CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCC
Q 041867          514 LH----GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCN  589 (776)
Q Consensus       514 l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  589 (776)
                      ++    ..+|..+..                                                     +++|++|+|++|
T Consensus       228 l~~~g~~~l~~~l~~-----------------------------------------------------~~~L~~L~L~~n  254 (386)
T 2ca6_A          228 FTHLGSSALAIALKS-----------------------------------------------------WPNLRELGLNDC  254 (386)
T ss_dssp             CHHHHHHHHHHHGGG-----------------------------------------------------CTTCCEEECTTC
T ss_pred             CCcHHHHHHHHHHcc-----------------------------------------------------CCCcCEEECCCC
Confidence            75    223333322                                                     347888899888


Q ss_pred             cCCCC----Chhhhcc--CccCCeeecccccccc----cCcccc-CCCCCCCEEECcCCccCCcCC
Q 041867          590 KLIGP----IPPQIGN--LTRIQTLNLSHNDLIG----LIPSTF-SNLKHVESLDLSNNKLNGKIP  644 (776)
Q Consensus       590 ~l~~~----~~~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~~  644 (776)
                      .+++.    ++..+..  +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..+
T Consensus       255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            88755    4566644  8999999999999998    356665 668999999999999987664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=5.8e-21  Score=199.93  Aligned_cols=256  Identities=20%  Similarity=0.208  Sum_probs=154.4

Q ss_pred             CcCEEEceeccCcccCChhhhccC--cccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcE
Q 041867          286 RLGMLDISNNNFRGHIPIEIGDVL--PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS  363 (776)
Q Consensus       286 ~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  363 (776)
                      .++.++++++.+.   +..+.. +  +.++.+++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3567777776654   222222 3  6788888888888765544 5567888888888888764312334456788888


Q ss_pred             EEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCC-ccccC-CCcccCCCCCCcEEEcccc-ccCCCCCCCCCC
Q 041867          364 LALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN-HLEGP-IPVEFCQLDLLQILDISDN-NISGSLPSCFHP  440 (776)
Q Consensus       364 L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~  440 (776)
                      |++++|.+           ++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++.       
T Consensus       123 L~L~~~~l-----------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-------  184 (336)
T 2ast_B          123 LSLEGLRL-----------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------  184 (336)
T ss_dssp             EECTTCBC-----------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------
T ss_pred             EeCcCccc-----------CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------
Confidence            88555543           3345666777788888888887 55542 4455667777777777777 65421       


Q ss_pred             CcccEEEcCCcccCcccccccCCccccccCChhhccCc-cCCEEEcccc--cCC-ccchhhhcCCCCCCEEeCCCCc-cc
Q 041867          441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS-QLSHLILGHN--NLE-GEVLVQLCELNQLQLLDLSNNN-LH  515 (776)
Q Consensus       441 ~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~  515 (776)
                                                  ..+..+..++ +|++|++++|  .++ +..+..+..+++|+.|++++|. ++
T Consensus       185 ----------------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~  236 (336)
T 2ast_B          185 ----------------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  236 (336)
T ss_dssp             ----------------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             ----------------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence                                        1233455566 6777777666  344 3344455666777777777776 44


Q ss_pred             CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCc-CCCC
Q 041867          516 GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNK-LIGP  594 (776)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~  594 (776)
                      +..+..+..                                                     +++|++|++++|. +...
T Consensus       237 ~~~~~~l~~-----------------------------------------------------l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          237 NDCFQEFFQ-----------------------------------------------------LNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             GGGGGGGGG-----------------------------------------------------CTTCCEEECTTCTTCCGG
T ss_pred             HHHHHHHhC-----------------------------------------------------CCCCCEeeCCCCCCCCHH
Confidence            333333332                                                     2367777777764 2211


Q ss_pred             ChhhhccCccCCeeecccccccccCccccCCC-CCCCEEECcCCccCCcCCccccC
Q 041867          595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVE  649 (776)
Q Consensus       595 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~  649 (776)
                      ....+..+++|+.|++++| ++.   ..+..+ .+++.|++++|++++..|..++.
T Consensus       264 ~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          264 TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            1124666777777777777 332   223333 23555667777777777766553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=6.8e-19  Score=172.27  Aligned_cols=137  Identities=24%  Similarity=0.216  Sum_probs=87.9

Q ss_pred             ccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccc
Q 041867          478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQ  557 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (776)
                      ++|+.|+|++|.+++..+..|..+++|+.|+|++|++....+..|..++                               
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-------------------------------   88 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-------------------------------   88 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-------------------------------
Confidence            5666677777766666666666666677777776666655555554433                               


Q ss_pred             ccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCC
Q 041867          558 IHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  637 (776)
                                            +|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus        89 ----------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           89 ----------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             ----------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred             ----------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence                                  5666666666666665666666666666666666666 33555566666666666666


Q ss_pred             ccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          638 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       638 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      ++++..+..|..+++|+.|++++|++.|..+
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6665555566666666666666666665443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=5.5e-19  Score=194.52  Aligned_cols=87  Identities=23%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC-------CEEECcCCccCCcCCccccCCCC
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV-------ESLDLSNNKLNGKIPHQLVELKT  652 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~  652 (776)
                      +|+.|+|++|++++ +|. |.  ++|+.|+|++|.|+.++ . |..  +|       +.|+|++|+|+ .+|..+..+++
T Consensus       161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~  231 (571)
T 3cvr_A          161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP-A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP  231 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC-C-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred             CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh-h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence            67777777777775 444 54  77777777777777443 3 443  56       88888888887 46666666888


Q ss_pred             CCEEecccccCcccCCCcccccc
Q 041867          653 LEVFSVAYNNLSGEIPEWTAQFA  675 (776)
Q Consensus       653 L~~L~l~~N~l~~~~p~~~~~~~  675 (776)
                      |+.|++++|++++.+|..+..+.
T Consensus       232 L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             TEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCEEEeeCCcCCCcCHHHHHHhh
Confidence            88888888888877776665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=168.73  Aligned_cols=146  Identities=25%  Similarity=0.281  Sum_probs=120.1

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      ..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|..++                      
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------  100 (208)
T 2o6s_A           43 LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT----------------------  100 (208)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred             CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc----------------------
Confidence            3444567788888899988888877777788889999999999988877666665544                      


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                     +|++|++++|.+++..+..|..+++|+.|++++|+++++.+..|..+++
T Consensus       101 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  149 (208)
T 2o6s_A          101 -------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  149 (208)
T ss_dssp             -------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence                                           7899999999998877778889999999999999999888878888999


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccc
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  674 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  674 (776)
                      |+.|++++|++.+       .+++|+.|+++.|.++|.+|.+++.+
T Consensus       150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            9999999998764       34578899999999999888866543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.3e-18  Score=169.02  Aligned_cols=158  Identities=22%  Similarity=0.242  Sum_probs=130.2

Q ss_pred             CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867          481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE  560 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (776)
                      +.++++++.++.+ |..+.  ++++.|++++|++.+..+..|..++                                  
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------------------------------   56 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYK----------------------------------   56 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence            5677777777744 33332  6788999999988877776776644                                  


Q ss_pred             eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867          561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN  640 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  640 (776)
                                         +|+.|+|++|.+++..|..|.++++|++|+|++|+++.+.+..|.++++|+.|+|++|+++
T Consensus        57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                               7889999999988888888999999999999999998888788888899999999999998


Q ss_pred             CcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867          641 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  694 (776)
Q Consensus       641 ~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~  694 (776)
                      +..|..|..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|++.
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            888888888899999999999998877777888888888999999999988764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=168.54  Aligned_cols=175  Identities=17%  Similarity=0.232  Sum_probs=146.2

Q ss_pred             CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCC-CCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867          481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP-PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH  559 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (776)
                      +.+++++|.++.+ |..+  .+.++.|++++|++++..+ ..|..+                                  
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l----------------------------------   56 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKL----------------------------------   56 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGC----------------------------------
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccC----------------------------------
Confidence            5788888888754 4333  3467899999999987754 345443                                  


Q ss_pred             ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867          560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL  639 (776)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  639 (776)
                                         ++|++|+|++|.+++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++
T Consensus        57 -------------------~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           57 -------------------PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             -------------------CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                               4899999999999988888999999999999999999999988999999999999999999


Q ss_pred             CCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCC
Q 041867          640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMS  703 (776)
Q Consensus       640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~  703 (776)
                      ++..|..|..+++|+.|++++|++++..|..+..+++++.+++++|||.|+|++.                .|..|....
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~  197 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLK  197 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGT
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHC
Confidence            9888999999999999999999999888988999999999999999999999752                477776666


Q ss_pred             CCCCCCCC
Q 041867          704 EASIGNER  711 (776)
Q Consensus       704 ~~~~~~~~  711 (776)
                      +..+....
T Consensus       198 g~~l~~l~  205 (220)
T 2v70_A          198 EIPIQDVA  205 (220)
T ss_dssp             TEEGGGSC
T ss_pred             CCChhhCC
Confidence            65444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=4.4e-18  Score=173.03  Aligned_cols=81  Identities=27%  Similarity=0.434  Sum_probs=60.1

Q ss_pred             cccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       579 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      ++|+.|++++|++++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL  207 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence            3677777777777654  567777888888888888877654  77788888888888888743 3 3777888888888


Q ss_pred             ccccCcc
Q 041867          659 AYNNLSG  665 (776)
Q Consensus       659 ~~N~l~~  665 (776)
                      ++|+++.
T Consensus       208 ~~n~i~~  214 (291)
T 1h6t_A          208 FSQECLN  214 (291)
T ss_dssp             EEEEEEC
T ss_pred             cCCcccC
Confidence            8888775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=5.4e-18  Score=165.81  Aligned_cols=157  Identities=22%  Similarity=0.256  Sum_probs=134.5

Q ss_pred             cCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccc
Q 041867          479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI  558 (776)
Q Consensus       479 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (776)
                      ..+.++.+++.++.... .+  .++|++|++++|++.+..|..|..++                                
T Consensus        20 s~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------   64 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLI--------------------------------   64 (229)
T ss_dssp             ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred             eCCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence            35678888888774433 23  37899999999999988888777654                                


Q ss_pred             cceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCc
Q 041867          559 HEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK  638 (776)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  638 (776)
                                           +|++|+|++|++....+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+
T Consensus        65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence                                 89999999999987777888999999999999999998888889999999999999999


Q ss_pred             cCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          639 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       639 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      ++ .+|..+..+++|+.|++++|++++..+..+..+..++.+++.+|||.|+|+
T Consensus       124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            98 678888899999999999999997777778888999999999999999986

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=163.95  Aligned_cols=134  Identities=22%  Similarity=0.343  Sum_probs=120.6

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .+++|++++|.++ .+|..|.++++|+.|+|++|.|+++.+..|.++++|++|+|++|++++..|..|..+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            7999999999998 677899999999999999999999999999999999999999999999988999999999999999


Q ss_pred             cccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCC
Q 041867          660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN  714 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~~  714 (776)
                      +|+++...+..+..++.++.+++++|||.|+|++.                .|..|....+..+.....+.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~  181 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK  181 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGG
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHH
Confidence            99999877777889999999999999999999752                58888888777665555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=3.6e-18  Score=162.03  Aligned_cols=134  Identities=22%  Similarity=0.376  Sum_probs=118.5

Q ss_pred             ccceEEccCCcCCCCChh-hhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          580 LLSGLDLSCNKLIGPIPP-QIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      .+++|++++|.+++..+. .|..+++|++|+|++|.++++.|..|.++++|++|+|++|++++..+..|..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            688999999999977664 5899999999999999999999999999999999999999999988888999999999999


Q ss_pred             ccccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCC
Q 041867          659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDD  713 (776)
Q Consensus       659 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~~~  713 (776)
                      ++|++++..|..+..+++++.+++++|+|.|+|++.                .|..|....+..+......
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~  180 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS  180 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTT
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHh
Confidence            999999998998899999999999999999999752                6888888877765554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.2e-18  Score=181.44  Aligned_cols=145  Identities=26%  Similarity=0.296  Sum_probs=119.9

Q ss_pred             cCChhhc-cCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccccc
Q 041867          469 SIPDWVD-GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI  547 (776)
Q Consensus       469 ~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (776)
                      ..+..|. ++++|+.|+|++|++++..+..|..+++|++|+|++|++.+..+..|..++                     
T Consensus        54 l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------------------  112 (361)
T 2xot_A           54 LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ---------------------  112 (361)
T ss_dssp             ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------
T ss_pred             cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc---------------------
Confidence            3444555 788899999999999888888888899999999999998877777776644                     


Q ss_pred             CCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCcccc---C
Q 041867          548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTF---S  624 (776)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~  624 (776)
                                                      +|+.|+|++|++++..|..|..+++|+.|+|++|+++++.+..|   .
T Consensus       113 --------------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~  160 (361)
T 2xot_A          113 --------------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN  160 (361)
T ss_dssp             --------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred             --------------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence                                            78999999999988888889999999999999999998877777   5


Q ss_pred             CCCCCCEEECcCCccCCcCCccccCCCC--CCEEecccccCccc
Q 041867          625 NLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSGE  666 (776)
Q Consensus       625 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~  666 (776)
                      .+++|+.|+|++|+|+...+..+..++.  ++.|++++|++.|.
T Consensus       161 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             -CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            6899999999999999777677777776  48899999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.1e-17  Score=161.38  Aligned_cols=139  Identities=27%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             CccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867          477 LSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK  556 (776)
Q Consensus       477 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (776)
                      .++|+.|++++|++++..+..|..+++|++|++++|++.+..+..|..++                              
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------   76 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT------------------------------   76 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------------------------------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC------------------------------
Confidence            35788888888888877777788888888888888888866666665543                              


Q ss_pred             cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                             +|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++
T Consensus        77 -----------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           77 -----------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             -----------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                   788888888888877777788888888888888888887777788888888888888


Q ss_pred             CccCCcCCccccCCCCCCEEecccccCcccCC
Q 041867          637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      |++++..+..+..+++|+.|++++|++.+..|
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            88887766677888888888888888876544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.6e-17  Score=182.33  Aligned_cols=58  Identities=29%  Similarity=0.468  Sum_probs=30.5

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      +|+.|+|++|.+.+..|  +..+++|+.|+|++|.++++  ..+..+++|+.|+|++|++..
T Consensus       154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            45555555555554433  55555555555555555543  235555555555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=9e-18  Score=167.87  Aligned_cols=170  Identities=21%  Similarity=0.236  Sum_probs=126.7

Q ss_pred             CCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCCh
Q 041867          393 LTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD  472 (776)
Q Consensus       393 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~  472 (776)
                      +.++..+++++|.+.+..  .+..+++|+.|++++|.+..                                     ++ 
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-------------------------------------l~-   57 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-------------------------------------LA-   57 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-------------------------------------CT-
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-------------------------------------ch-
Confidence            445556666666666433  45566677777777766552                                     12 


Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG  552 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (776)
                      .+..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+...                              
T Consensus        58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~------------------------------  105 (263)
T 1xeu_A           58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS------------------------------  105 (263)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC------------------------------
T ss_pred             HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc------------------------------
Confidence            35667788888888888876655  7888888888888888875432111                              


Q ss_pred             CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867          553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL  632 (776)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  632 (776)
                                                ++|++|++++|.+++.  ..+..+++|+.|++++|+++++  ..+..+++|+.|
T Consensus       106 --------------------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L  155 (263)
T 1xeu_A          106 --------------------------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVL  155 (263)
T ss_dssp             --------------------------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEE
T ss_pred             --------------------------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEE
Confidence                                      2688999999998854  3588899999999999999876  368889999999


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCccc
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  666 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  666 (776)
                      ++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999999866  6688889999999999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=5.8e-17  Score=164.75  Aligned_cols=58  Identities=29%  Similarity=0.456  Sum_probs=38.3

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCC
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      +|+.|++++|.+++..+  +..+++|+.|++++|.++++.  .+..+++|+.|++++|+++.
T Consensus       157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence            56666666666664433  666777777777777776542  36677777777777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=6.5e-17  Score=178.00  Aligned_cols=42  Identities=26%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             ceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867          582 SGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS  624 (776)
Q Consensus       582 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  624 (776)
                      +.|+|++|.|+ .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            55555555554 2344444455555555555555444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=3.2e-17  Score=155.46  Aligned_cols=157  Identities=21%  Similarity=0.255  Sum_probs=122.2

Q ss_pred             CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCC-CCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867          481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPP-CFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH  559 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (776)
                      +.+++++|.++.+ |..+.  +++++|++++|++.+..+. .|..+                                  
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l----------------------------------   53 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRL----------------------------------   53 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGC----------------------------------
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccC----------------------------------
Confidence            6778888887643 33332  3788999999988876664 35443                                  


Q ss_pred             ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867          560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL  639 (776)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  639 (776)
                                         ++|++|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|++|++
T Consensus        54 -------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           54 -------------------PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             -------------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             -------------------CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                               3799999999999988899999999999999999999999888899999999999999999


Q ss_pred             CCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC
Q 041867          640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  694 (776)
Q Consensus       640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~  694 (776)
                      ++..|..+..+++|+.|++++|+++|..+.. .....++...+.++...|.-|..
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P~~  168 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCChH
Confidence            9888999999999999999999999866531 11122344455667777876643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=3e-17  Score=170.57  Aligned_cols=76  Identities=14%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCC-eeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEe
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQ-TLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  657 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  657 (776)
                      +|+.|++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            6777777776 6656667777777777 777777 66667777777777777777777777766667777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=8.3e-17  Score=179.39  Aligned_cols=197  Identities=22%  Similarity=0.304  Sum_probs=134.1

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      .+..+.+..+.+.+..+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|++.           +..+  +
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~-----------~~~~--l   83 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLT-----------DIKP--L   83 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCC-----------CCGG--G
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCC-----------CChh--h
Confidence            45555666665554322  345677777777777776 5542  345677777775554433           2222  6


Q ss_pred             cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                      ..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+                                     +
T Consensus        84 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-------------------------------------l  124 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-------------------------------------I  124 (605)
T ss_dssp             GGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-------------------------------------C
T ss_pred             ccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-------------------------------------C
Confidence            6666677777777666642  245666666666666665542                                     1


Q ss_pred             ChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                       ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+..|  +..                          
T Consensus       125 -~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~--------------------------  173 (605)
T 1m9s_A          125 -NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG--------------------------  173 (605)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT--------------------------
T ss_pred             -ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc--------------------------
Confidence             2367788999999999999876  578889999999999999887655  444                          


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccC
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFS  624 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  624 (776)
                                                 +++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+.+...+.
T Consensus       174 ---------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          174 ---------------------------LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             ---------------------------CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence                                       34899999999999864  4688899999999999999876444433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.2e-16  Score=152.42  Aligned_cols=133  Identities=16%  Similarity=0.269  Sum_probs=99.9

Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      +..+++|+.|++++|.++..  ..+..+++|++|++++|++.+..+..+..++                           
T Consensus        62 l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---------------------------  112 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLT---------------------------  112 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---------------------------
T ss_pred             HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCC---------------------------
Confidence            56677888888888866533  3677788888888888888766666665543                           


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc-ccccCccccCCCCCCCEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNLKHVESL  632 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  632 (776)
                                                +|++|++++|.+++..+..+..+++|++|++++|. ++.+ + .+..+++|+.|
T Consensus       113 --------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L  164 (197)
T 4ezg_A          113 --------------------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSL  164 (197)
T ss_dssp             --------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEE
T ss_pred             --------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEE
Confidence                                      78888888888887778888888888888888887 6654 3 57888888888


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  665 (776)
                      ++++|++++. + .+..+++|+.|++++|++..
T Consensus       165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            8888888753 3 67788888888888888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=8.9e-19  Score=194.16  Aligned_cols=208  Identities=18%  Similarity=0.151  Sum_probs=146.8

Q ss_pred             cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccC
Q 041867          391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI  470 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~  470 (776)
                      ..++.|+.|++++|+++ .+|..++.+++|+.|++++|......+                       ..+..+...+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~-----------------------~ll~~~~~~~~~  401 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII-----------------------LLMRALDPLLYE  401 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH-----------------------HHHHHHCTGGGH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH-----------------------HHHHhcccccCC
Confidence            45677778888888876 567777777888888776654210000                       001111223355


Q ss_pred             ChhhccCccCCEEE-cccccCCccchh-----hhcC--CCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhh
Q 041867          471 PDWVDGLSQLSHLI-LGHNNLEGEVLV-----QLCE--LNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFE  542 (776)
Q Consensus       471 ~~~~~~l~~L~~L~-L~~n~l~~~~~~-----~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (776)
                      |..+..+++|+.|+ ++.|.+......     .+..  ...|+.|++++|.++++ |. +..+                 
T Consensus       402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l-----------------  462 (567)
T 1dce_A          402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQL-----------------  462 (567)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGG-----------------
T ss_pred             HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-cccc-----------------
Confidence            66677777777776 555543321100     0111  13589999999999864 43 5543                 


Q ss_pred             cccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccc
Q 041867          543 IFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPST  622 (776)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  622 (776)
                                                          ++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++++ | .
T Consensus       463 ------------------------------------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~  503 (567)
T 1dce_A          463 ------------------------------------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-G  503 (567)
T ss_dssp             ------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-G
T ss_pred             ------------------------------------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-c
Confidence                                                48999999999999 7788999999999999999999974 5 8


Q ss_pred             cCCCCCCCEEECcCCccCCcC-CccccCCCCCCEEecccccCcccCCCcc---ccccccCcc
Q 041867          623 FSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSVAYNNLSGEIPEWT---AQFATFNES  680 (776)
Q Consensus       623 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~p~~~---~~~~~l~~~  680 (776)
                      +..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|...   ..+++++.+
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            999999999999999999877 9999999999999999999998766532   224455544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=2.8e-16  Score=149.83  Aligned_cols=153  Identities=20%  Similarity=0.249  Sum_probs=131.1

Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      ...+++|+.|++++|.++.. + .+..+++|++|++++|.+...  ..+..                             
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~--~~l~~-----------------------------   86 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNY--NPISG-----------------------------   86 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCC--GGGTT-----------------------------
T ss_pred             hhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcc--hhhhc-----------------------------
Confidence            46788999999999999944 3 688999999999999976532  23333                             


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                              +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        87 ------------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           87 ------------------------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             ------------------------CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             ------------------------CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence                                    34899999999999987888999999999999999999998889999999999999


Q ss_pred             CcCCc-cCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCC
Q 041867          634 LSNNK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF  687 (776)
Q Consensus       634 Ls~N~-l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~  687 (776)
                      +++|+ ++ .+| .+..+++|+.|++++|+++. ++ .+..+++++.+++++|+.
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            99998 66 555 68999999999999999996 44 578899999999999974

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=3.4e-16  Score=162.59  Aligned_cols=220  Identities=14%  Similarity=0.130  Sum_probs=147.6

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCc----ccc
Q 041867          333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNH----LEG  408 (776)
Q Consensus       333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----i~~  408 (776)
                      +++|+.+++.+ .++ .++..+|.+|++|+.+++++|.+           ..+.+.+|.++.++..+....+.    ...
T Consensus       100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i-----------~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~  166 (329)
T 3sb4_A          100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTA-----------PNLLPEALADSVTAIFIPLGSSDAYRFKNR  166 (329)
T ss_dssp             CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSC-----------CEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred             cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCc-----------cccchhhhcCCCceEEecCcchhhhhcccc
Confidence            67777777766 666 66777777777777777444433           33455566666666666555422    122


Q ss_pred             CCCcccCCCCCCc-EEEccccccCC--CCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhh-ccCccCCEEE
Q 041867          409 PIPVEFCQLDLLQ-ILDISDNNISG--SLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV-DGLSQLSHLI  484 (776)
Q Consensus       409 ~~~~~~~~l~~L~-~L~ls~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~-~~l~~L~~L~  484 (776)
                      ....+|.++..|+ .+.+....-..  .......+.++..+.+.++-.              ......+ ..+++|+.++
T Consensus       167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--------------~~~~~~l~~~~~~L~~l~  232 (329)
T 3sb4_A          167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD--------------NADFKLIRDYMPNLVSLD  232 (329)
T ss_dssp             TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC--------------HHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeec--------------HHHHHHHHHhcCCCeEEE
Confidence            2334455555555 33333221100  000111233444443332210              0111111 2489999999


Q ss_pred             cccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeee
Q 041867          485 LGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEF  564 (776)
Q Consensus       485 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (776)
                      |++|+++.+...+|.++++|+.+++.+| +..+.+.+|.++.                                      
T Consensus       233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~--------------------------------------  273 (329)
T 3sb4_A          233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG--------------------------------------  273 (329)
T ss_dssp             CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT--------------------------------------
T ss_pred             CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh--------------------------------------
Confidence            9999999999999999999999999998 8878888888865                                      


Q ss_pred             eecceEEEeccccccccc-eEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          565 TTKNIVYIYQGKVLSLLS-GLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       565 ~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                     +|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus       274 ---------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          274 ---------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ---------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ---------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                           898 999998 787788899999999999999999999999999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=3.9e-16  Score=156.00  Aligned_cols=152  Identities=23%  Similarity=0.271  Sum_probs=130.7

Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG  552 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (776)
                      .+..+++|+.|++++|.++...  .+..+++|+.|++++|++.+..+  +..                            
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~----------------------------   83 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKD----------------------------   83 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTT----------------------------
T ss_pred             chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hcc----------------------------
Confidence            4788999999999999998653  68899999999999999987655  544                            


Q ss_pred             CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867          553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL  632 (776)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  632 (776)
                                               +++|++|++++|++++.. . +.. ++|+.|++++|+++++  ..+..+++|+.|
T Consensus        84 -------------------------l~~L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L  133 (263)
T 1xeu_A           84 -------------------------LTKLEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL  133 (263)
T ss_dssp             -------------------------CSSCCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred             -------------------------CCCCCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence                                     348999999999999643 3 333 9999999999999976  369999999999


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCC
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  690 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~  690 (776)
                      ++++|++++. + .+..+++|+.|++++|++++.  ..+..++.++.+++++|++.|.
T Consensus       134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999999965 4 688999999999999999976  5578899999999999998765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=5.1e-15  Score=156.67  Aligned_cols=248  Identities=10%  Similarity=0.123  Sum_probs=144.5

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCcc
Q 041867          327 PSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHL  406 (776)
Q Consensus       327 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i  406 (776)
                      ..+|.++ +|+.+.+..+ ++ .++..+|.++ +|+.+.+..            .+..+.+.+|.+|++|+.+++++|.+
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~------------~l~~I~~~aF~~c~~L~~l~l~~n~l  192 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS------------TLEQLKEDIFYYCYNLKKADLSKTKI  192 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT------------TCCEECSSTTTTCTTCCEEECTTSCC
T ss_pred             HhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC------------CccEehHHHhhCcccCCeeecCCCcc
Confidence            3444443 4555555544 44 5555555443 455555332            12223444555555666666655555


Q ss_pred             ccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEc
Q 041867          407 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLIL  485 (776)
Q Consensus       407 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L  485 (776)
                      ..+...+|. ..+|+.+.+..+ +..+....|. +.+|+.+.+..+              ++.+...+|.+ .+|+.+.+
T Consensus       193 ~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--------------l~~I~~~aF~~-~~L~~i~l  255 (401)
T 4fdw_A          193 TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--------------VSTIGQEAFRE-SGITTVKL  255 (401)
T ss_dssp             SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--------------CCEECTTTTTT-CCCSEEEE
T ss_pred             eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--------------ccCcccccccc-CCccEEEe
Confidence            554444554 355565555533 4444444444 555555544332              12234445555 56777777


Q ss_pred             ccccCCccchhhhcCCCCCCEEeCCCCccc-----CCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867          486 GHNNLEGEVLVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE  560 (776)
Q Consensus       486 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (776)
                       .+.++.+...+|.++++|+.+++.+|.+.     .+.+.+|.++.                                  
T Consensus       256 -p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~----------------------------------  300 (401)
T 4fdw_A          256 -PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP----------------------------------  300 (401)
T ss_dssp             -ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT----------------------------------
T ss_pred             -CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc----------------------------------
Confidence             34556566667777777777777666543     24444555433                                  


Q ss_pred             eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867          561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN  640 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  640 (776)
                                         +|+.+++. +.+..+...+|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+.
T Consensus       301 -------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          301 -------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             -------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             -------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence                               67777776 3466566677777777777777554 666677777777 7888888777777


Q ss_pred             CcCCccccCCC-CCCEEecccccCc
Q 041867          641 GKIPHQLVELK-TLEVFSVAYNNLS  664 (776)
Q Consensus       641 ~~~~~~l~~l~-~L~~L~l~~N~l~  664 (776)
                      ...+..|..++ .++.+.+..+.+.
T Consensus       359 ~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          359 QVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ccccccccCCCCCccEEEeCHHHHH
Confidence            66666776663 6777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=4.6e-15  Score=157.00  Aligned_cols=252  Identities=16%  Similarity=0.097  Sum_probs=202.5

Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867          333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV  412 (776)
Q Consensus       333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  412 (776)
                      +..++.+.+.+ .++ .++...|.++ +|+.+.+..+            ++.+...+|.++ +|+.+.+.+ .+..+.+.
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~------------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~  174 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG------------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED  174 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT------------CCEECTTTTTTC-CCCEEECCT-TCCEECSS
T ss_pred             cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC------------ccEECHHhcCCC-CceEEEeCC-CccEehHH
Confidence            46777888765 466 8888888875 7999996544            334566778875 699999986 67778888


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG  492 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  492 (776)
                      +|.++++|+.+++++|.+..+....|.+.+|+.+.+..+              +..+...+|.+|++|+.+.+.++ ++.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--------------l~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--------------LKEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--------------CCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--------------hheehhhHhhCCCCCCEEecCCC-ccC
Confidence            999999999999999999988888998889999977543              33466778999999999999875 676


Q ss_pred             cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEE
Q 041867          493 EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI  572 (776)
Q Consensus       493 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (776)
                      +...+|.+ .+|+.+.+. +.+..+...+|..+.                                              
T Consensus       240 I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~----------------------------------------------  271 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCP----------------------------------------------  271 (401)
T ss_dssp             ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCT----------------------------------------------
T ss_pred             cccccccc-CCccEEEeC-CCccEEChhHhhCCC----------------------------------------------
Confidence            77788888 789999994 557767777887755                                              


Q ss_pred             eccccccccceEEccCCcCC-----CCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccc
Q 041867          573 YQGKVLSLLSGLDLSCNKLI-----GPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQL  647 (776)
Q Consensus       573 ~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  647 (776)
                             +|+.+++.+|.+.     .+.+.+|.++++|+.+++. +.++.+...+|.++++|+.++|.+| ++.+.+.+|
T Consensus       272 -------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          272 -------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             -------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             -------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                   7999999888765     4667889999999999999 4588888899999999999999665 777778899


Q ss_pred             cCCCCCCEEecccccCcccCCCccccc
Q 041867          648 VELKTLEVFSVAYNNLSGEIPEWTAQF  674 (776)
Q Consensus       648 ~~l~~L~~L~l~~N~l~~~~p~~~~~~  674 (776)
                      ..+ +|+.+++++|.+....+..|..+
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCC
Confidence            999 99999999998775544444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.4e-15  Score=142.35  Aligned_cols=113  Identities=23%  Similarity=0.289  Sum_probs=104.2

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      +|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            78999999999998888889999999999999999998888889999999999999999998888888999999999999


Q ss_pred             cccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      +|++++..+..+..+++++.+++++|++.|+|+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999997777667889999999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=5e-18  Score=188.16  Aligned_cols=171  Identities=17%  Similarity=0.175  Sum_probs=134.2

Q ss_pred             cCChhhccCccCCEEEccccc-------------CCccchhhhcCCCCCCEEe-CCCCcccCCCCCCCcCCcccccccCC
Q 041867          469 SIPDWVDGLSQLSHLILGHNN-------------LEGEVLVQLCELNQLQLLD-LSNNNLHGPIPPCFDNTTLYESYSNS  534 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~~~~~~~~~  534 (776)
                      .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+.......+..          
T Consensus       363 ~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~----------  432 (567)
T 1dce_A          363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE----------  432 (567)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----------
T ss_pred             hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhc----------
Confidence            567777888888888876664             5567778888899999999 7776553111000000          


Q ss_pred             CCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccc
Q 041867          535 SSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND  614 (776)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  614 (776)
                                                      +.+..    -....|+.|+|++|.+++ +|. +..+++|+.|+|++|.
T Consensus       433 --------------------------------n~i~~----l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~  474 (567)
T 1dce_A          433 --------------------------------NSVLK----MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR  474 (567)
T ss_dssp             --------------------------------HHHHH----HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred             --------------------------------ccccc----cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence                                            00000    001258999999999996 565 9999999999999999


Q ss_pred             ccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC-CCccccccccCcccccCCCCCCC
Q 041867          615 LIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-PEWTAQFATFNESSYEGNTFLCG  690 (776)
Q Consensus       615 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~~l~~~~~~~n~~~c~  690 (776)
                      ++ .+|..|.++++|+.|+|++|++++ +| .+..+++|+.|++++|++++.. |..+..++.|+.+++++|+....
T Consensus       475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            99 567899999999999999999996 66 8999999999999999999887 88899999999999999987543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.1e-15  Score=141.64  Aligned_cols=137  Identities=23%  Similarity=0.280  Sum_probs=112.4

Q ss_pred             CccCCEEEcccccCC-ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867          477 LSQLSHLILGHNNLE-GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE  555 (776)
Q Consensus       477 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (776)
                      .++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+.  ..+..                               
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   69 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------   69 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence            467889999999887 56666778888999999999988765  44443                               


Q ss_pred             ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCCCCEEEC
Q 041867          556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVESLDL  634 (776)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L  634 (776)
                                            +++|++|++++|.+++.+|..+..+++|+.|++++|.++++.+ ..+..+++|+.|++
T Consensus        70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                  3489999999999987788888889999999999999987643 78889999999999


Q ss_pred             cCCccCCcCC---ccccCCCCCCEEecccccCcccCCC
Q 041867          635 SNNKLNGKIP---HQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       635 s~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      ++|++++..+   ..+..+++|+.|++++|++.. .|.
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence            9999986655   478889999999999998873 443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=4.6e-15  Score=138.76  Aligned_cols=133  Identities=23%  Similarity=0.253  Sum_probs=113.8

Q ss_pred             CCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcccccc
Q 041867          480 LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH  559 (776)
Q Consensus       480 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (776)
                      .+.+++++|+++.... .+  .++|+.|++++|++.+..+..|..++                                 
T Consensus         9 ~~~l~~~~~~l~~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~---------------------------------   52 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLT---------------------------------   52 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred             CCEEEecCCCCccCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcc---------------------------------
Confidence            5678888888875432 22  36899999999999877776666544                                 


Q ss_pred             ceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCcc
Q 041867          560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL  639 (776)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  639 (776)
                                          +|++|++++|.+++..+..|..+++|++|++++|.++++++..|..+++|+.|++++|++
T Consensus        53 --------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           53 --------------------QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             --------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence                                899999999999988888889999999999999999998888899999999999999999


Q ss_pred             CCcCCccccCCCCCCEEecccccCcccCC
Q 041867          640 NGKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       640 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      ++..+..+..+++|+.|++++|++.+..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            97777778889999999999999998666

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=4.2e-15  Score=140.71  Aligned_cols=131  Identities=24%  Similarity=0.263  Sum_probs=108.9

Q ss_pred             CEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccc
Q 041867          481 SHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHE  560 (776)
Q Consensus       481 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (776)
                      +.+++++|.++.. |..+  .++|++|++++|+++ .+|..|..+                                   
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l-----------------------------------   53 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNY-----------------------------------   53 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGC-----------------------------------
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcc-----------------------------------
Confidence            5677888887744 3322  257889999999887 444555443                                   


Q ss_pred             eeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccC
Q 041867          561 IFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLN  640 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  640 (776)
                                        ++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+++
T Consensus        54 ------------------~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           54 ------------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             ------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ------------------cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence                              37999999999999888889999999999999999999999999999999999999999999


Q ss_pred             CcCCccccCCCCCCEEecccccCcccCC
Q 041867          641 GKIPHQLVELKTLEVFSVAYNNLSGEIP  668 (776)
Q Consensus       641 ~~~~~~l~~l~~L~~L~l~~N~l~~~~p  668 (776)
                      ...+..|..+++|+.|++++|++.|...
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          116 VVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             eeChhhhhcCccccEEEeCCCCeecCCc
Confidence            7777789999999999999999987443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=4.7e-16  Score=178.04  Aligned_cols=223  Identities=20%  Similarity=0.183  Sum_probs=94.9

Q ss_pred             CCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcc
Q 041867          334 KFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVE  413 (776)
Q Consensus       334 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~  413 (776)
                      +.++.|++.+|.+. ..+..      .++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~-~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~  242 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE-DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISAN  242 (727)
T ss_dssp             ----------------------------------------------------------CCCCCCEEECTTSCCS-CCCGG
T ss_pred             CccceEEeeCCCCC-cchhh------HhhcCccCcccccC-cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChh
Confidence            44666777777665 33322      34445555554431 123333333 44555666666666666666666 34444


Q ss_pred             cCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCcc
Q 041867          414 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE  493 (776)
Q Consensus       414 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  493 (776)
                      +..+++|++|+|++|.+.                                     .+|..|.++++|+.|+|++|.|+ .
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-------------------------------------~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-------------------------------------ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-------------------------------------CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             hcCCCCCCEEEeeCCcCc-------------------------------------ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            446666666666666555                                     44556677778888888888877 4


Q ss_pred             chhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEe
Q 041867          494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIY  573 (776)
Q Consensus       494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (776)
                      +|..|..+++|++|+|++|.+. .+|..|..++                                               
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-----------------------------------------------  316 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-----------------------------------------------  316 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-----------------------------------------------
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-----------------------------------------------
Confidence            5667777888888888888776 4455565543                                               


Q ss_pred             ccccccccceEEccCCcCCCCChhhhccCcc-CCeeecccccccccCccccCCCCCCCEEECcCC--------ccCCcCC
Q 041867          574 QGKVLSLLSGLDLSCNKLIGPIPPQIGNLTR-IQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNN--------KLNGKIP  644 (776)
Q Consensus       574 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~  644 (776)
                            +|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.      .|+.|++++|        .+.+..+
T Consensus       317 ------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~  384 (727)
T 4b8c_D          317 ------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTE  384 (727)
T ss_dssp             ------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------------------------
T ss_pred             ------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCcccccc
Confidence                  7888888888888777777765432 23477888888776654      4455666666        3444444


Q ss_pred             ccccCCCCCCEEecccccCc
Q 041867          645 HQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       645 ~~l~~l~~L~~L~l~~N~l~  664 (776)
                      ..+..+..+....+++|-+.
T Consensus       385 ~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          385 HLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------------CCC
T ss_pred             chhhcccccceeeeeccccc
Confidence            45555666677777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=2.2e-15  Score=136.53  Aligned_cols=129  Identities=23%  Similarity=0.265  Sum_probs=104.5

Q ss_pred             CccCCEEEcccccCC-ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCcc
Q 041867          477 LSQLSHLILGHNNLE-GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVE  555 (776)
Q Consensus       477 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (776)
                      .++|+.|++++|.++ +..+..+..+++|+.|++++|.+.+.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            467889999999887 56677778888999999999988765  34443                               


Q ss_pred             ccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEEC
Q 041867          556 KQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDL  634 (776)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  634 (776)
                                            +++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus        63 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           63 ----------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ----------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ----------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                  34788999999999877888888889999999999998875 3477888899999999


Q ss_pred             cCCccCCcCC---ccccCCCCCCEEeccc
Q 041867          635 SNNKLNGKIP---HQLVELKTLEVFSVAY  660 (776)
Q Consensus       635 s~N~l~~~~~---~~l~~l~~L~~L~l~~  660 (776)
                      ++|++++..+   ..+..+++|+.||+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999986665   5788888999988864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=5.6e-14  Score=149.72  Aligned_cols=310  Identities=12%  Similarity=0.080  Sum_probs=195.4

Q ss_pred             hhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeecccccCccCCCccCCCCCCC
Q 041867          257 LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFL  336 (776)
Q Consensus       257 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  336 (776)
                      |.++.+|+.+.+.. .++.....+|.+|++|+.+++..+ ++ .++...+..+++|+.+.+..+ +......+|.++..+
T Consensus        67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            45566666666643 355555566666666776666543 33 344444444556666555433 332334455555433


Q ss_pred             CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867          337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ  416 (776)
Q Consensus       337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  416 (776)
                      +....  .... .+....|.++.+|+.+.+..+-            ......+|.++.+|+.+.+..+ +..+...+|.+
T Consensus       143 ~~~~~--~~~~-~i~~~aF~~c~~L~~i~l~~~~------------~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~  206 (394)
T 4fs7_A          143 EITIP--EGVT-VIGDEAFATCESLEYVSLPDSM------------ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE  206 (394)
T ss_dssp             EEECC--TTCC-EECTTTTTTCTTCCEEECCTTC------------CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred             ccccC--cccc-ccchhhhcccCCCcEEecCCcc------------ceeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence            32222  2222 4555667777777777754332            1234556777777777777665 44456667777


Q ss_pred             CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchh
Q 041867          417 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV  496 (776)
Q Consensus       417 l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  496 (776)
                      +..|+.+.+..+... .....+....|+.+.+....              ..+...+|.++..++.+.+..+... ....
T Consensus       207 ~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--------------~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~  270 (394)
T 4fs7_A          207 CILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--------------TELGKSVFYGCTDLESISIQNNKLR-IGGS  270 (394)
T ss_dssp             CTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--------------CEECSSTTTTCSSCCEEEECCTTCE-ECSC
T ss_pred             ccccceeecCCCceE-eehhhcccCCCceEEECCCc--------------eecccccccccccceeEEcCCCcce-eecc
Confidence            777777777665432 23334445666766553321              1234456777888888888766433 5566


Q ss_pred             hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccc
Q 041867          497 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK  576 (776)
Q Consensus       497 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (776)
                      .|..+..++.+....+.+   ...+|..+                                                   
T Consensus       271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~---------------------------------------------------  296 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIV---PEKTFYGC---------------------------------------------------  296 (394)
T ss_dssp             TTTTCTTCCEEEECSSEE---CTTTTTTC---------------------------------------------------
T ss_pred             ccccccccceeccCceee---cccccccc---------------------------------------------------
Confidence            777788888877765542   22334332                                                   


Q ss_pred             cccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867          577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  656 (776)
Q Consensus       577 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  656 (776)
                        .+|+.+.+..+ +..+...+|.++++|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+
T Consensus       297 --~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i  371 (394)
T 4fs7_A          297 --SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV  371 (394)
T ss_dssp             --TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred             --ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence              36888888655 55566788999999999999754 77788889999999999999877 776777889999999999


Q ss_pred             ecccc
Q 041867          657 SVAYN  661 (776)
Q Consensus       657 ~l~~N  661 (776)
                      ++..+
T Consensus       372 ~lp~~  376 (394)
T 4fs7_A          372 ELPKR  376 (394)
T ss_dssp             EEEGG
T ss_pred             EECCC
Confidence            98765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.1e-13  Score=147.60  Aligned_cols=155  Identities=10%  Similarity=0.023  Sum_probs=103.0

Q ss_pred             chhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCc
Q 041867           22 LQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRI  101 (776)
Q Consensus        22 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  101 (776)
                      ..+ |.++++|+.+.|..+ ++ .+...+|.+|.+|+.+++..+   +. .+....+.++.+|+.+.+..+- .    .+
T Consensus        64 ~~A-F~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~---l~-~I~~~aF~~c~~L~~i~~p~~l-~----~i  131 (394)
T 4fs7_A           64 YAA-FQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS---VK-MIGRCTFSGCYALKSILLPLML-K----SI  131 (394)
T ss_dssp             TTT-TTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT---CC-EECTTTTTTCTTCCCCCCCTTC-C----EE
T ss_pred             HHH-hhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC---ce-EccchhhcccccchhhcccCce-e----ee
Confidence            344 788888999998743 54 555568899999999988765   12 2233333378888887776542 2    34


Q ss_pred             CCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCccccc
Q 041867          102 LDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLF  181 (776)
Q Consensus       102 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~  181 (776)
                      ...+|..+..++......  ...+...+|.++++|+.+.+.++. . .++...|..+.+|+.+++..+ +. .+...++.
T Consensus       132 ~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~  205 (394)
T 4fs7_A          132 GVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA  205 (394)
T ss_dssp             CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred             cceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence            455777765444333322  333456778889999999987654 3 577778888889998888766 33 44556677


Q ss_pred             CCCCCcEEEcccC
Q 041867          182 NHSRLKTFYADNN  194 (776)
Q Consensus       182 ~l~~L~~L~l~~n  194 (776)
                      ++..|+.+.+..+
T Consensus       206 ~~~~L~~i~~~~~  218 (394)
T 4fs7_A          206 ECILLENMEFPNS  218 (394)
T ss_dssp             TCTTCCBCCCCTT
T ss_pred             cccccceeecCCC
Confidence            7777776655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=9.4e-15  Score=135.38  Aligned_cols=132  Identities=18%  Similarity=0.162  Sum_probs=60.6

Q ss_pred             CCCcEEECCCCCCC-CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867            5 TNLEYLTLHGSSLH-ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS   83 (776)
Q Consensus         5 ~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~   83 (776)
                      ++|++|+|++|++. +.++.. +..+++|++|++++|.+.+.   ..+..+++|++|++++|  .+.+..+..+. .+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~-~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN--RIFGGLDMLAE-KLPN   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC--CCCSCCCHHHH-HCTT
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC--cCchHHHHHHh-hCCC
Confidence            44555555555554 233333 44455555555555555432   13455555555555555  22232333333 4555


Q ss_pred             ccEEEccCCCCCCCCCCcCC-cCCCCCCCCCEEEccCCccccccC---ccccCCCCCCEEeCCCCcCc
Q 041867           84 LKYLSLSYSTLGTNSSRILD-RGLCSPVHLQELYIGSNDLRGSLP---WCMTNLTSLRILDVSSNQLT  147 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~  147 (776)
                      |++|++++|.+++    ++. ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        97 L~~L~Ls~N~l~~----~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           97 LTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCEEECBSSSCCS----SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCEEeccCCccCc----chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555555543    211 234444555555555555543322   24444555555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=9.2e-16  Score=175.64  Aligned_cols=117  Identities=21%  Similarity=0.205  Sum_probs=75.4

Q ss_pred             cccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCE
Q 041867          319 MNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQY  398 (776)
Q Consensus       319 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~  398 (776)
                      .|.+. ..+..+..++.|+.|+|++|.+. .+|..++ .+++|+.|+|++|.++            .+|..|..+++|++
T Consensus       210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~  274 (727)
T 4b8c_D          210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRV  274 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCE
T ss_pred             cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCCCE
Confidence            34444 45667788888888888888887 8888777 5888888885555543            56777888888888


Q ss_pred             EeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCc
Q 041867          399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  451 (776)
Q Consensus       399 L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  451 (776)
                      |+|++|.++ .+|..|..+++|++|+|++|.+..++.....+.+|++|++++|
T Consensus       275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            888888888 5677788888888888888877633222112444444433333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=1.2e-14  Score=134.59  Aligned_cols=110  Identities=25%  Similarity=0.276  Sum_probs=95.1

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      ..+.+++++|.++. +|..+.  ++|+.|+|++|.|+++.|..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46789999999984 555553  789999999999998888889999999999999999998877788889999999999


Q ss_pred             cccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      +|+|++..+..+..+.+++.+++++|||.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998777778888999999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=2e-14  Score=130.17  Aligned_cols=128  Identities=18%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             CCCCcEEECCCCCCC-CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCC
Q 041867            4 FTNLEYLTLHGSSLH-ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMP   82 (776)
Q Consensus         4 l~~L~~L~L~~n~~~-~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~   82 (776)
                      .++|++|++++|.++ +.++.. +..+++|++|++++|.+.+.   ..+..+++|++|++++|  .+.+..+..+. .++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~-~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLEVLAE-KCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTHHHHH-HCT
T ss_pred             CccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHHHHhh-hCC
Confidence            456666777766665 344443 56666677777766666543   24666666666666666  33343444444 566


Q ss_pred             CccEEEccCCCCCCCCCCcC-CcCCCCCCCCCEEEccCCccccccC---ccccCCCCCCEEeCC
Q 041867           83 SLKYLSLSYSTLGTNSSRIL-DRGLCSPVHLQELYIGSNDLRGSLP---WCMTNLTSLRILDVS  142 (776)
Q Consensus        83 ~L~~L~L~~n~i~~~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~  142 (776)
                      +|++|++++|.+++    ++ ...+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        89 ~L~~L~ls~N~i~~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCS----HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCC----hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666666666654    21 1245556666666666666654433   345566666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=3.8e-14  Score=131.50  Aligned_cols=109  Identities=20%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             cceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEeccc
Q 041867          581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  660 (776)
Q Consensus       581 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  660 (776)
                      -+.+++++|.+. .+|..+.  ++|+.|+|++|.++++.|..|.++++|+.|+|++|+|+++.+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367888888886 4555554  7888888888888888888888888888888888888876666778888888888888


Q ss_pred             ccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          661 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       661 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      |+|++..+..+..+++++.+++++|+|.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88887666667788888888888888888875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=2.1e-14  Score=133.99  Aligned_cols=134  Identities=19%  Similarity=0.165  Sum_probs=101.5

Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCC-CCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQ  551 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (776)
                      .+..+++|+.|++++|.++.. +. +..+ ++|+.|++++|++++.  ..+..                           
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~---------------------------   62 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPL---------------------------   62 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCC---------------------------
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccccc---------------------------
Confidence            356678888888888888854 33 4444 4888888888888754  33433                           


Q ss_pred             CCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCCCC
Q 041867          552 GNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVE  630 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~  630 (776)
                                                +++|++|++++|.+++..+..|..+++|+.|++++|.++.+.+ ..+..+++|+
T Consensus        63 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           63 --------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT  116 (176)
T ss_dssp             --------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred             --------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence                                      3478888999998887666667888899999999998875443 3778888899


Q ss_pred             EEECcCCccCCcCCc----cccCCCCCCEEecccccCc
Q 041867          631 SLDLSNNKLNGKIPH----QLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       631 ~L~Ls~N~l~~~~~~----~l~~l~~L~~L~l~~N~l~  664 (776)
                      .|++++|+++ .+|.    .+..+++|+.||+++|.+.
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999887 4455    3778888999999888776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.8e-13  Score=126.50  Aligned_cols=89  Identities=24%  Similarity=0.260  Sum_probs=84.6

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .+++|+|++|.+++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            79999999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             cccCcccCC
Q 041867          660 YNNLSGEIP  668 (776)
Q Consensus       660 ~N~l~~~~p  668 (776)
                      +|++++..+
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            999997665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=7e-14  Score=130.45  Aligned_cols=132  Identities=18%  Similarity=0.209  Sum_probs=111.0

Q ss_pred             hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccc
Q 041867          497 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK  576 (776)
Q Consensus       497 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (776)
                      .+..+++|+.|++++|++... +. +..                                                    
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~----------------------------------------------------   39 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGA----------------------------------------------------   39 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGG----------------------------------------------------
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhh----------------------------------------------------
Confidence            467788999999999999854 32 211                                                    


Q ss_pred             cccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCc--cccCCCCCC
Q 041867          577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH--QLVELKTLE  654 (776)
Q Consensus       577 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~~L~  654 (776)
                      ..++|+.|++++|.+++.  ..+..+++|+.|++++|.++++++..|..+++|+.|++++|+++ .+|.  .+..+++|+
T Consensus        40 ~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           40 TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT  116 (176)
T ss_dssp             GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence            123799999999999965  68999999999999999999887777799999999999999997 4555  788999999


Q ss_pred             EEecccccCcccCCCc----cccccccCcccccCCC
Q 041867          655 VFSVAYNNLSGEIPEW----TAQFATFNESSYEGNT  686 (776)
Q Consensus       655 ~L~l~~N~l~~~~p~~----~~~~~~l~~~~~~~n~  686 (776)
                      .|++++|+++ ..|..    +..++.++.+++++|+
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999998 45653    7788899999988874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=5.1e-13  Score=123.86  Aligned_cols=89  Identities=24%  Similarity=0.268  Sum_probs=83.5

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .|+.|+|++|.+++..|..|.++++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            79999999999999999999999999999999999999988889999999999999999997777779999999999999


Q ss_pred             cccCcccCC
Q 041867          660 YNNLSGEIP  668 (776)
Q Consensus       660 ~N~l~~~~p  668 (776)
                      +|++.+..+
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            999997554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=7e-12  Score=133.44  Aligned_cols=327  Identities=11%  Similarity=0.099  Sum_probs=178.9

Q ss_pred             hhcCC-CCcEEEccCCCCcCcCCCCCCCCCCcCEEEceecc---CcccCChhhhccCcccceeecccccCccCCCccCCC
Q 041867          257 LENNT-KLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN---FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGN  332 (776)
Q Consensus       257 ~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  332 (776)
                      |.++. .|+.+.+..+ ++.....+|.+|.+|+.+.+..|.   ++ .+....+..+.+|+.+.+..+ ++.....+|..
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            34553 4777777543 666667778888888888887653   33 344444444667777666544 44455567788


Q ss_pred             CCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867          333 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV  412 (776)
Q Consensus       333 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  412 (776)
                      +.+|+.+.+..+ +. .+....|.++.+|+.+.+..+            +..+...+|.. .+|+.+.+..+-.. ....
T Consensus       136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~------------~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~  199 (394)
T 4gt6_A          136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS------------VTAIEERAFTG-TALTQIHIPAKVTR-IGTN  199 (394)
T ss_dssp             CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT------------CCEECTTTTTT-CCCSEEEECTTCCE-ECTT
T ss_pred             hcccccccccce-ee-eecccceecccccccccccce------------eeEeccccccc-cceeEEEECCcccc-cccc
Confidence            888888888644 44 677777778888888876543            22233445543 56778877665433 5566


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcc-cEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCC
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE  491 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  491 (776)
                      +|..+.++.......+.........+..... .................+ .+.+..+...+|.++..|+.+.+.++.. 
T Consensus       200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~~~~-  277 (394)
T 4gt6_A          200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPDSVV-  277 (394)
T ss_dssp             TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCTTCC-
T ss_pred             hhhhccccceecccccccccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEecccccc-
Confidence            7778888887776655443222211110000 000000000000000000 0122234445677777777777754432 


Q ss_pred             ccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEE
Q 041867          492 GEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY  571 (776)
Q Consensus       492 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (776)
                      .+...+|.++++|+.+.+. +.+..+...+|.++.                                             
T Consensus       278 ~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~---------------------------------------------  311 (394)
T 4gt6_A          278 SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI---------------------------------------------  311 (394)
T ss_dssp             EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT---------------------------------------------
T ss_pred             eecCcccccccccccccCC-CcccccCceeecCCC---------------------------------------------
Confidence            3455666777777777775 334445555555543                                             


Q ss_pred             EeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCC
Q 041867          572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  651 (776)
Q Consensus       572 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  651 (776)
                              +|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++....   ..+....
T Consensus       312 --------~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~  378 (394)
T 4gt6_A          312 --------SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS  378 (394)
T ss_dssp             --------TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC
T ss_pred             --------CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC
Confidence                    5666666543 44455566677777777776543 555666667777777777776665431   3455556


Q ss_pred             CCCEEecccccC
Q 041867          652 TLEVFSVAYNNL  663 (776)
Q Consensus       652 ~L~~L~l~~N~l  663 (776)
                      .|+.+.+..|.+
T Consensus       379 ~L~~i~i~~~~~  390 (394)
T 4gt6_A          379 GLQNLPVAPGSI  390 (394)
T ss_dssp             CC----------
T ss_pred             CCCEEEeCCCCE
Confidence            666666655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=2.1e-15  Score=143.95  Aligned_cols=86  Identities=26%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCC-ccccCCCCCCEEec
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVFSV  658 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l  658 (776)
                      +|++|++++|.++ .+|..+..+++|+.|++++|+++++ | .+..+++|+.|++++|+++...+ +.+..+++|+.|++
T Consensus        71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence            4555555555554 3344444445555555555555543 2 34445555555555555543221 24445555555555


Q ss_pred             ccccCcccCC
Q 041867          659 AYNNLSGEIP  668 (776)
Q Consensus       659 ~~N~l~~~~p  668 (776)
                      ++|++++.+|
T Consensus       148 ~~N~l~~~~~  157 (198)
T 1ds9_A          148 AGNPLYNDYK  157 (198)
T ss_dssp             CSCHHHHHHH
T ss_pred             cCCccccccc
Confidence            5555544433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=7.7e-15  Score=139.96  Aligned_cols=136  Identities=22%  Similarity=0.275  Sum_probs=113.4

Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      +|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.. +|..+..                         
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~-------------------------   91 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAV-------------------------   91 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECS-CSSHHHH-------------------------
T ss_pred             hhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccc-ccchhhc-------------------------
Confidence            445889999999999999999974 4 88899999999999999983 3433322                         


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKH  628 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  628 (776)
                                                  +++|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++
T Consensus        92 ----------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~  141 (198)
T 1ds9_A           92 ----------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ----------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ----------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC
Confidence                                        3489999999999996 45 69999999999999999997654 57899999


Q ss_pred             CCEEECcCCccCCcCCcc----------ccCCCCCCEEecccccCcc
Q 041867          629 VESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~~  665 (776)
                      |+.|++++|++.+..|..          +..+++|+.||  +|+++.
T Consensus       142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999999998776543          78899999987  787764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.38  E-value=2.4e-11  Score=129.23  Aligned_cols=331  Identities=8%  Similarity=0.045  Sum_probs=195.3

Q ss_pred             CcCcCCCCCCCCC-CcCEEEceeccCcccCChhhhccCcccceeeccccc---CccCCCccCCCCCCCCEEEccCCcCCC
Q 041867          273 LGGPFRLPIHSHK-RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNA---LDGSIPSSLGNMKFLQILDLSNNHLTG  348 (776)
Q Consensus       273 ~~~~~~~~~~~~~-~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~  348 (776)
                      ++.+...+|.+++ .|+.+.+..+ ++ .+....+..+++|+.+.+..+.   ++.....+|..+.+|+.+.+..+ ++ 
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence            3444566777774 5888888653 44 4445455557778887776653   44444567777777777766544 44 


Q ss_pred             cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEcccc
Q 041867          349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN  428 (776)
Q Consensus       349 ~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n  428 (776)
                      .++...|.++.+|+.+.+..+-            ......+|..+.+|+.+.+.++ +..+...+|.+ ..|+.+.+..+
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~~------------~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~  192 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEGV------------TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK  192 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTC------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred             eehhhhhhhhccccccccccee------------eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence            6667777777777777754332            2234556777777777777654 33345555644 46777777654


Q ss_pred             ccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEE
Q 041867          429 NISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLL  507 (776)
Q Consensus       429 ~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  507 (776)
                      -.. .....|. +..+................-...+.........+.....+..+.+. +.++.+...+|.++..|+.+
T Consensus       193 ~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i  270 (394)
T 4gt6_A          193 VTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASV  270 (394)
T ss_dssp             CCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEE
T ss_pred             ccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEE
Confidence            322 3333343 55666555443322210000000000000000011122334444443 23344555678888888888


Q ss_pred             eCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEcc
Q 041867          508 DLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS  587 (776)
Q Consensus       508 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  587 (776)
                      .+.++.. .+...+|..+.                                                     .|+.+.+.
T Consensus       271 ~lp~~~~-~I~~~aF~~c~-----------------------------------------------------~L~~i~l~  296 (394)
T 4gt6_A          271 KMPDSVV-SIGTGAFMNCP-----------------------------------------------------ALQDIEFS  296 (394)
T ss_dssp             ECCTTCC-EECTTTTTTCT-----------------------------------------------------TCCEEECC
T ss_pred             ecccccc-eecCccccccc-----------------------------------------------------ccccccCC
Confidence            8865533 34455555543                                                     78888886


Q ss_pred             CCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccC
Q 041867          588 CNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI  667 (776)
Q Consensus       588 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  667 (776)
                       +.+..+...+|.++++|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.+|....  
T Consensus       297 -~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--  371 (394)
T 4gt6_A          297 -SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--  371 (394)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred             -CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence             4566567788999999999999865 77777888999999999999755 666777889999999999998876542  


Q ss_pred             CCccccccccCccccc
Q 041867          668 PEWTAQFATFNESSYE  683 (776)
Q Consensus       668 p~~~~~~~~l~~~~~~  683 (776)
                       ..+.....|+.+.+.
T Consensus       372 -~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          372 -NAISTDSGLQNLPVA  386 (394)
T ss_dssp             -HTCBCCCCC------
T ss_pred             -hhhhccCCCCEEEeC
Confidence             123334445555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.2e-12  Score=136.98  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=90.1

Q ss_pred             ceEEccCC-cCCCCChhhhccCccCCeeeccc-ccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          582 SGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSH-NDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       582 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      ..++++++ .++ .+|. +..+++|+.|+|++ |.|+++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 787 4666 88888899999986 88888888888889999999999999988888888888999999999


Q ss_pred             cccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867          660 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       660 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      +|+|++..+..+..+. |+.+++.+|++.|+|++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999876666555554 88888899999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=2.7e-12  Score=134.32  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=95.3

Q ss_pred             ccceEEccC-CcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          580 LLSGLDLSC-NKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       580 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      +|+.|+|++ |.+.++.+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..|..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            799999996 999998889999999999999999999999999999999999999999999987777777766 999999


Q ss_pred             ccccCcccCC-CccccccccCcccccCCCCCCCCCC
Q 041867          659 AYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       659 ~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      ++|++.+... .++..+.......++.+.+.|..+.
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence            9999997544 2344444444455666778886643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=1.5e-13  Score=144.04  Aligned_cols=166  Identities=18%  Similarity=0.189  Sum_probs=81.9

Q ss_pred             CCCCEEeCCCCcCccccCC---CcCC-CCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcC
Q 041867           30 PSLKNLSISYCEVNGVVHG---QGFP-HFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRG  105 (776)
Q Consensus        30 ~~L~~L~Ls~n~~~~~~~~---~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~  105 (776)
                      ++|++|+|++|.+......   ..+. ..++|++|++++|  .+.......+...+++|++|+|++|.+++.+.......
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4566666666655422111   0111 2246666666666  33333333333344566666666666654221111111


Q ss_pred             C-CCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc----CCcccccCCCCCCEEeccCCcccccc-
Q 041867          106 L-CSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS----ISSSPLIHLTSIEKLYLSNNHFQIPI-  175 (776)
Q Consensus       106 l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~~~~-  175 (776)
                      + ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+.+.    +.. .+...++|++|++++|.++... 
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCHHHH
Confidence            1 2345666666666666532    233345566666666666666521    112 3445556666666666665210 


Q ss_pred             --CcccccCCCCCcEEEcccCcccc
Q 041867          176 --SLEPLFNHSRLKTFYADNNELNA  198 (776)
Q Consensus       176 --~~~~l~~l~~L~~L~l~~n~~~~  198 (776)
                        -...+...++|++|++++|.+..
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCH
Confidence              01123345666677777666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=2.7e-12  Score=134.47  Aligned_cols=165  Identities=18%  Similarity=0.213  Sum_probs=93.5

Q ss_pred             CCCcEEECCCCCCCCccchh---ccC-CCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHH--
Q 041867            5 TNLEYLTLHGSSLHISLLQS---IAS-IFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVIS--   78 (776)
Q Consensus         5 ~~L~~L~L~~n~~~~~~~~~---~~~-~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~--   78 (776)
                      ++|++|+|++|.++......   .+. ..++|++|+|++|.+...........+++|++|++++|  .+.......+.  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHH
Confidence            56777777777766432222   011 23577777777777653222111223566777777777  44433333332  


Q ss_pred             --hcCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc---
Q 041867           79 --ESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS---  149 (776)
Q Consensus        79 --~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  149 (776)
                        ...++|++|+|++|.+++.+.......+..+++|++|+|++|.++..    ++..+...++|++|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              23566777777777765422222223445566777777777777643    244556667777777777776532   


Q ss_pred             -CCcccccCCCCCCEEeccCCccc
Q 041867          150 -ISSSPLIHLTSIEKLYLSNNHFQ  172 (776)
Q Consensus       150 -i~~~~~~~l~~L~~L~L~~n~l~  172 (776)
                       +.. .+...++|++|++++|.++
T Consensus       230 ~l~~-~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALAR-AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHH-HHHHCSSCCEEECTTSSCC
T ss_pred             HHHH-HHHhCCCCCEEeccCCCCC
Confidence             111 3445567777777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.10  E-value=6.1e-09  Score=110.18  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          594 PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       594 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      +...+|.++++|+.+.+.++.++.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+.+.
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            33344555555555555555555454555555555555555433 433444455555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.00  E-value=2.6e-08  Score=105.23  Aligned_cols=155  Identities=10%  Similarity=0.051  Sum_probs=114.3

Q ss_pred             hhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCC
Q 041867          473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQG  552 (776)
Q Consensus       473 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (776)
                      .+..+..+..+.+.... .......+..+.+|+.+.+..+ +..+...+|..+.                          
T Consensus       189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~--------------------------  240 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK--------------------------  240 (379)
T ss_dssp             ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS--------------------------
T ss_pred             cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCc--------------------------
Confidence            34455566666554432 2344556677778888877654 3334444554433                          


Q ss_pred             CccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEE
Q 041867          553 NVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL  632 (776)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  632 (776)
                                                 .|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+
T Consensus       241 ---------------------------~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          241 ---------------------------ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             ---------------------------SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ---------------------------cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence                                       6888888765 55567788999999999999764 666778899999999999


Q ss_pred             ECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCC
Q 041867          633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  685 (776)
Q Consensus       633 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n  685 (776)
                      ++.++.++.+.+.+|.++.+|+.+++..+ ++..-..+|..+..|+.+.+..+
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            99999998888889999999999999765 66566677888888888877543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=2e-08  Score=104.01  Aligned_cols=162  Identities=18%  Similarity=0.206  Sum_probs=90.7

Q ss_pred             CCCCCcEEECCCCCCC---------CccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcch
Q 041867            3 NFTNLEYLTLHGSSLH---------ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNF   73 (776)
Q Consensus         3 ~l~~L~~L~L~~n~~~---------~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~   73 (776)
                      ++++|+.|.+......         +.+. .++..+|+|+.|+|++|.-. .++  .+ .+++|++|++..|  .+....
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~--~~-~~~~L~~L~L~~~--~l~~~~  209 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIG--KK-PRPNLKSLEIISG--GLPDSV  209 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCC--SC-BCTTCSEEEEECS--BCCHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eec--cc-cCCCCcEEEEecC--CCChHH
Confidence            3578888888654321         1122 22567788888888776311 222  23 3778888888877  444444


Q ss_pred             hHHHH-hcCCCccEEEccC--CCCCCC-CCCcCCcCC--CCCCCCCEEEccCCccccccCcccc---CCCCCCEEeCCCC
Q 041867           74 LQVIS-ESMPSLKYLSLSY--STLGTN-SSRILDRGL--CSPVHLQELYIGSNDLRGSLPWCMT---NLTSLRILDVSSN  144 (776)
Q Consensus        74 ~~~~~-~~l~~L~~L~L~~--n~i~~~-~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n  144 (776)
                      ...+. ..+|+|++|+|+.  +...+. +..-....+  ..+++|++|+|++|.+....+..+.   .+++|++|+|+.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            44443 2578888888753  111110 000000112  2467788888877777643332232   4667777777777


Q ss_pred             cCccc----CCcccccCCCCCCEEeccCCccc
Q 041867          145 QLTGS----ISSSPLIHLTSIEKLYLSNNHFQ  172 (776)
Q Consensus       145 ~l~~~----i~~~~~~~l~~L~~L~L~~n~l~  172 (776)
                      .+.+.    +.. .+.++++|+.|+++.|.++
T Consensus       290 ~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          290 VLTDEGARLLLD-HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred             CCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence            76642    222 2345667777777777655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=8e-09  Score=106.95  Aligned_cols=83  Identities=16%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             ccccceEEccCCcCCCCChhhhc---cCccCCeeecccccccccC----ccccCCCCCCCEEECcCCccCCcCCccccC-
Q 041867          578 LSLLSGLDLSCNKLIGPIPPQIG---NLTRIQTLNLSHNDLIGLI----PSTFSNLKHVESLDLSNNKLNGKIPHQLVE-  649 (776)
Q Consensus       578 ~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-  649 (776)
                      +++|+.|+|++|.+....+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|+|++|.|+...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34677777776666533222332   3556666666666665532    222233566666666666655322222221 


Q ss_pred             CCCCCEEeccccc
Q 041867          650 LKTLEVFSVAYNN  662 (776)
Q Consensus       650 l~~L~~L~l~~N~  662 (776)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            1  2445555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=2.4e-08  Score=93.18  Aligned_cols=13  Identities=15%  Similarity=0.054  Sum_probs=5.6

Q ss_pred             CCCcEEEcccCcc
Q 041867          184 SRLKTFYADNNEL  196 (776)
Q Consensus       184 ~~L~~L~l~~n~~  196 (776)
                      +.|++|++++|.+
T Consensus       151 ~~L~~L~L~~n~i  163 (185)
T 1io0_A          151 TTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCCSSH
T ss_pred             CCcCEEeccCCCC
Confidence            3444444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=6e-08  Score=90.46  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             cCCCCCCCEEeCCCC-cCccc----cCCCcCCCCCCCcEEeCCCCccccCc--chhHHHHhcCCCccEEEccCCCCCCCC
Q 041867           26 ASIFPSLKNLSISYC-EVNGV----VHGQGFPHFKSLEHLGMMSTRIALNT--NFLQVISESMPSLKYLSLSYSTLGTNS   98 (776)
Q Consensus        26 ~~~~~~L~~L~Ls~n-~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~   98 (776)
                      +...+.|++|+|++| .+...    +. ..+...++|++|++++|.|...+  .+...+. ..+.|++|+|++|.|.+.+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~-~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHH-hCCCcCEEECcCCcCCHHH
Confidence            445566666666666 55321    11 13344555666666666322111  1122222 3455555555555555433


Q ss_pred             CCcCCcCCCCCCCCCEEEc--cCCccccc----cCccccCCCCCCEEeCCCCcC
Q 041867           99 SRILDRGLCSPVHLQELYI--GSNDLRGS----LPWCMTNLTSLRILDVSSNQL  146 (776)
Q Consensus        99 ~~~~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  146 (776)
                      .......+...++|++|+|  ++|.+...    +...+...++|++|+|++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            2223334444455555555  44555432    122333344455555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.26  E-value=9.1e-07  Score=76.47  Aligned_cols=57  Identities=21%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             eeeccccccc-ccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcc
Q 041867          607 TLNLSHNDLI-GLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       607 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  665 (776)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5666666665 12233332  256666666666665555566666666666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=1e-06  Score=86.18  Aligned_cols=62  Identities=29%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             cccceEEccCCcCCCC--ChhhhccCccCCeeeccccccccc-CccccCCCCCCCEEECcCCccCC
Q 041867          579 SLLSGLDLSCNKLIGP--IPPQIGNLTRIQTLNLSHNDLIGL-IPSTFSNLKHVESLDLSNNKLNG  641 (776)
Q Consensus       579 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~  641 (776)
                      +.|++|+|++|.|+++  +|..+..+++|+.|+|++|+|++. ..+.+..+ +|++|+|++|++.+
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            3455555555555442  223444455555555555555443 01112222 44455555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=2e-07  Score=91.18  Aligned_cols=100  Identities=24%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             ccce--EEccCCcCC---CCChhhhccCccCCeeecccccccccC--ccccCCCCCCCEEECcCCccCCcCCccccCCC-
Q 041867          580 LLSG--LDLSCNKLI---GPIPPQIGNLTRIQTLNLSHNDLIGLI--PSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-  651 (776)
Q Consensus       580 ~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-  651 (776)
                      .|..  ++++.|...   ...+....++++|+.|+|++|+|+++.  +..+..+++|+.|+|++|+|++.  +.+..+. 
T Consensus       142 ~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~  219 (267)
T 3rw6_A          142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG  219 (267)
T ss_dssp             HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred             chhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence            4554  677777533   222223357899999999999999853  46667899999999999999965  3344444 


Q ss_pred             -CCCEEecccccCcccCCC-------ccccccccCccc
Q 041867          652 -TLEVFSVAYNNLSGEIPE-------WTAQFATFNESS  681 (776)
Q Consensus       652 -~L~~L~l~~N~l~~~~p~-------~~~~~~~l~~~~  681 (776)
                       +|+.|++++|++++..|.       .+..+++|..++
T Consensus       220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence             899999999999987663       234455555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=2.2e-06  Score=77.31  Aligned_cols=87  Identities=8%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             CCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcC----CCccEEEccCCC-CCCCCCCcCCc
Q 041867           30 PSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESM----PSLKYLSLSYST-LGTNSSRILDR  104 (776)
Q Consensus        30 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~  104 (776)
                      ..|++||+++|.++..--. .+.++++|++|+|++|. .+++.....+. .+    ++|++|+|++|. +++.+.    .
T Consensus        61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~-~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl----~  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCH-YIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGI----I  133 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCT-TCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHH----H
T ss_pred             ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCC-ccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHH----H
Confidence            4699999999998644333 57889999999999994 46666666776 43    579999999985 766332    2


Q ss_pred             CCCCCCCCCEEEccCCc-cc
Q 041867          105 GLCSPVHLQELYIGSND-LR  123 (776)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~-l~  123 (776)
                      .+.++++|++|++++|. ++
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            46678999999999985 44

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=2.7e-06  Score=76.79  Aligned_cols=83  Identities=11%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeeccccc-ccccCccccCCC----CCCCEEECcCCc-cCCcCCccccCCCCC
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHND-LIGLIPSTFSNL----KHVESLDLSNNK-LNGKIPHQLVELKTL  653 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~L  653 (776)
                      .|++||++++.++..--..+.++++|+.|+|++|. +++..-..+..+    ++|++|+|++|. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            69999999999886666778899999999999995 776544556654    479999999985 775444567788999


Q ss_pred             CEEeccccc
Q 041867          654 EVFSVAYNN  662 (776)
Q Consensus       654 ~~L~l~~N~  662 (776)
                      +.|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=9.7e-05  Score=68.00  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cCCCCCCCEEeCCCC-cCcccc---CCCcCCCCCCCcEEeCCCCccccCc--chhHHHHhcCCCccEEEccCCCCCCCCC
Q 041867           26 ASIFPSLKNLSISYC-EVNGVV---HGQGFPHFKSLEHLGMMSTRIALNT--NFLQVISESMPSLKYLSLSYSTLGTNSS   99 (776)
Q Consensus        26 ~~~~~~L~~L~Ls~n-~~~~~~---~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~   99 (776)
                      ..+-+.|++|+|+++ .|...-   -..++..-..|+.|+|++|+|.-.+  .+.+.+. .-+.|++|+|++|.|.+.+.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHHHH
Confidence            456688999999885 664210   0113455567777777777332111  1223333 44677777777777776555


Q ss_pred             CcCCcCCCCCCCCCEEEccCCcc---ccc----cCccccCCCCCCEEeCCCCc
Q 041867          100 RILDRGLCSPVHLQELYIGSNDL---RGS----LPWCMTNLTSLRILDVSSNQ  145 (776)
Q Consensus       100 ~~~~~~l~~l~~L~~L~Ls~n~l---~~~----~~~~~~~l~~L~~L~L~~n~  145 (776)
                      ....+++...+.|++|+|++|..   ...    +.+.+..-+.|+.|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            55555666666677777765432   211    22334445566666665554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.32  E-value=4.2e-05  Score=70.44  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             cCCCccEEEccCC-CCCCCCCCcCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCcCccc----C
Q 041867           80 SMPSLKYLSLSYS-TLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQLTGS----I  150 (776)
Q Consensus        80 ~l~~L~~L~L~~n-~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----i  150 (776)
                      +-+.|++|+|+++ .|.+.+......++.....|++|+|++|+|...    +.+.+..-+.|++|+|++|.|.+.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4456666666654 554433333334555555666666666666532    223333455666666666666432    1


Q ss_pred             CcccccCCCCCCEEeccCCc---cccc---cCcccccCCCCCcEEEcccCcc
Q 041867          151 SSSPLIHLTSIEKLYLSNNH---FQIP---ISLEPLFNHSRLKTFYADNNEL  196 (776)
Q Consensus       151 ~~~~~~~l~~L~~L~L~~n~---l~~~---~~~~~l~~l~~L~~L~l~~n~~  196 (776)
                      .. .+...+.|++|+|++|.   +...   .-...+...+.|+.|+++.+.+
T Consensus       119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            11 34455566666666442   2210   0112345556677777766554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.00058  Score=58.71  Aligned_cols=80  Identities=15%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             CEEECcCCccC-CcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCC--------------
Q 041867          630 ESLDLSNNKLN-GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP--------------  694 (776)
Q Consensus       630 ~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~--------------  694 (776)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+..++.+++++|||.|+|.+.              
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~   88 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP   88 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence            37788888876 34554432  36888888888888776777777888888888888888888641              


Q ss_pred             ----CCCCCCCCCCCCCCCCC
Q 041867          695 ----ICRSPATMSEASIGNER  711 (776)
Q Consensus       695 ----~c~~~~~~~~~~~~~~~  711 (776)
                          .|.+|....|..+....
T Consensus        89 ~~~~~C~~P~~l~g~~l~~l~  109 (130)
T 3rfe_A           89 YRDLRCVAPPALRGRLLPYLA  109 (130)
T ss_dssp             GTTCBCCBSTTTTTCBGGGCC
T ss_pred             ccCcEeCcChHHcCCCcccCC
Confidence                57777766666544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	776
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.3 bits (220), Expect = 1e-19
 Identities = 63/383 (16%), Positives = 121/383 (31%), Gaps = 37/383 (9%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
             +   N    +     D + +L      + ++DG     +  +  L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 350 IP-------EHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMP 402
            P         + +    +  +    N          N+    I          +  +  
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 403 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR--- 459
           N   +         L  L   +   +    +  +    L I    +S   +  +L     
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 460 -DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPI 518
              + N+++   P  +   + L  L L  N L+   +  L  L  L  LDL+NN +    
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 519 PPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVL 578
           P            S  + L E       I +             E     +  I     L
Sbjct: 258 P-----------LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 579 SLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
             L+ L L  N +    P  + +LT++Q L  ++N +     S+ +NL ++  L   +N+
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 639 LNGKIPHQLVELKTLEVFSVAYN 661
           ++   P  L  L  +    +   
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 5e-15
 Identities = 72/402 (17%), Positives = 129/402 (32%), Gaps = 63/402 (15%)

Query: 111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH 170
            +  L      ++ S+   +  L +L  ++ S+NQLT      PL +LT +  + ++NN 
Sbjct: 45  QVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQ 99

Query: 171 FQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPK 230
                 L  L N     T + +       +    +L       + +S  S      +  +
Sbjct: 100 IADITPLANLTNL-TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 231 FLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGML 290
             +     +   L+++           + +       L N                   L
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE----------------SL 202

Query: 291 DISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEI 350
             +NN      P+ I   L  L L  N +         +L ++  L  LDL+NN ++   
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLA 257

Query: 351 PEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPI 410
           P     G   L  L L  N +                  L  LT L  + +  N      
Sbjct: 258 PLS---GLTKLTELKLGANQISN-------------ISPLAGLTALTNLELNENQ--LED 299

Query: 411 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSI 470
                 L  L  L +  NNIS   P       ++++  + N +               S 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRLFFANNKV---------------SD 343

Query: 471 PDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
              +  L+ ++ L  GHN +    L  L  L ++  L L++ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 68/397 (17%), Positives = 128/397 (32%), Gaps = 55/397 (13%)

Query: 131 TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFY 190
           T L       +    +T ++S +    L  +  L       +   S++ +   + L    
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 191 ADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
             NN+L            P   L++L       + +     L +  +L  + L + ++  
Sbjct: 73  FSNNQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 251 EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP 310
             P   L N  +L                 I     L  L        G+   ++  +  
Sbjct: 125 IDPLKNLTNLNRLEL-----------SSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
              L    +++   S  S L  +  L+ L  +NN ++   P  +     NL  L+L+ N 
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQ 230

Query: 371 LQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 430
           L++                L +LT L  + + NN +    P     L  L  L +  N I
Sbjct: 231 LKD-------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 275

Query: 431 SGSLP--------SCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSH 482
           S   P        +     +  +     + L       L +N ++   P  V  L++L  
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 333

Query: 483 LILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
           L   +N +    +  L  L  +  L   +N +    P
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 5e-10
 Identities = 67/373 (17%), Positives = 118/373 (31%), Gaps = 55/373 (14%)

Query: 1   LHNFTNLEYLTLHGSSLH----ISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKS 56
           +    NL  +    + L     +  L  +  I  +   ++      N             
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 57  LEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELY 116
           +  +  +     LN   L   + S  S      S   L   +     + L +   L+ L 
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 117 IGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPIS 176
           I SN +       +  LT+L  L  ++NQ++      PL  LT++++L L+ N  +   +
Sbjct: 182 ISSNKVSD--ISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIGT 236

Query: 177 LEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQH 236
           L  L N   L      NN+++                                  L    
Sbjct: 237 LASLTN---LTDLDLANNQISNLAP------------------------------LSGLT 263

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
            L  ++L   +++   P   L   T L                PI + K L  L +  NN
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNN 318

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
                P+     L  L+  NN +     S  SSL N+  +  L   +N ++   P     
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLA--- 370

Query: 357 GCVNLQSLALSNN 369
               +  L L++ 
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 6e-07
 Identities = 60/346 (17%), Positives = 114/346 (32%), Gaps = 34/346 (9%)

Query: 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNN 380
            +       L   ++T  + +        + +L      ++             +  +NN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 76

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP 440
            L+   P  L NLT L  I+M NN +    P+          L  +       L +  + 
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 441 LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNN-LEGEVLVQLC 499
             ++    + + +              G+    +  L+ L+ L     +  +   +  L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 500 ELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIH 559
           +L  L+ L  +NN +    P               ++LDE       ++           
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL-----------TNLDELSLNGNQLKDIGTLASLTNL 243

Query: 560 EIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLI 619
              +     I  +     L+ L+ L L  N++    P  +  LT +  L L+ N L    
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE--D 299

Query: 620 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 665
            S  SNLK++  L L  N ++   P  +  L  L+    A N +S 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 47/315 (14%), Positives = 104/315 (33%), Gaps = 38/315 (12%)

Query: 375 LYLNNNSLSGKIPRW-LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGS 433
             L   +++  + +  L  +T LQ   +    ++G        L+ L  ++ S+N ++  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTD- 80

Query: 434 LPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 493
           +    +   +  + ++ N +          N    ++ +           +   N     
Sbjct: 81  ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR---- 136

Query: 494 VLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN 553
                   N +  +   +           +  T  +  +N ++L+        +      
Sbjct: 137 ---LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN 613
            +    E    T   I  I    +L+ L  L L+ N+L       + +LT +  L+L++N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 251

Query: 614 DLIGLIPSTFSNLKHVESLDLSNNKLNGKIP--------------------HQLVELKTL 653
            +  L P   S L  +  L L  N+++   P                      +  LK L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 654 EVFSVAYNNLSGEIP 668
              ++ +NN+S   P
Sbjct: 310 TYLTLYFNNISDISP 324

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 8e-16
 Identities = 41/279 (14%), Positives = 85/279 (30%), Gaps = 28/279 (10%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
           L L NN ++        NL  L  +I+ NN +    P  F  L  L+ L +S N +    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 435 PSCFHP-----------LSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHL 483
                              +++   +       ++   +  + +G       G+ +LS++
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155

Query: 484 ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEI 543
            +   N+     +       L  L L  N +                 +N + L   F  
Sbjct: 156 RIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKG------LNNLAKLGLSFNS 206

Query: 544 FFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIG------PIPP 597
             ++++        + E+     K +           +  + L  N +          P 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 598 QIGNLTRIQTLNLSHNDL--IGLIPSTFSNLKHVESLDL 634
                     ++L  N +    + PSTF  +    ++ L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 18/269 (6%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSN 168
           P     L + +N +         NL +L  L + +N+++     +    L  +E+LYLS 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSK 88

Query: 169 NHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTF 228
           N  +  +  +       L+    +  ++   +    +        +    SSG E     
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE----- 142

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
                    L  + ++   +    P  L  +   L +L L  + +       +     L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
            L +S N+             P L   + + N L   +P  L + K++Q++ L NN+++ 
Sbjct: 199 KLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 349 -----EIPEHLAVGCVNLQSLALSNNNLQ 372
                  P        +   ++L +N +Q
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 9/211 (4%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
           DL  N++          L  L  LIL +N +          L +L+ L LS N L   +P
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LP 95

Query: 520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLS 579
                T        +     +  +F  +     N    +         + +     + + 
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGL-----NQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
            LS + ++   +   IP   G    +  L+L  N +  +  ++   L ++  L LS N +
Sbjct: 151 KLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
           +      L     L    +  N L       
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 19/298 (6%)

Query: 70  NTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC 129
           +    +V  +  P    L L  + +    + I D    +  +L  L + +N +    P  
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 130 MTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTF 189
              L  L  L +S NQL       P     ++++L +  N        + +FN       
Sbjct: 75  FAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVHENEITKVR--KSVFNGLNQMIV 128

Query: 190 YADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMN 249
                         +       +LS + ++      +           L  + L   K+ 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKIT 184

Query: 250 GEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIG-DV 308
                  L+    L +L L  +S+       + +   L  L ++NN              
Sbjct: 185 KVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 309 LPSLYLFNNSMNALDGS---IPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQS 363
           +  +YL NN+++A+  +    P           + L +N +     +     CV +++
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 23/87 (26%), Positives = 34/87 (39%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI 643
           LDL  NK+         NL  + TL L +N +  + P  F+ L  +E L LS N+L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 644 PHQLVELKTLEVFSVAYNNLSGEIPEW 670
                 L+ L V       +   +   
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNG 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 595 IPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 654
           +P  +        L+L +N +  +    F NLK++ +L L NNK++   P     L  LE
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 655 VFSVAYNNLSGEIPEWTAQFATFNESS 681
              ++ N L     +            
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.6 bits (179), Expect = 9e-15
 Identities = 62/269 (23%), Positives = 104/269 (38%), Gaps = 22/269 (8%)

Query: 374 GLYLNNNSLSGK--IPRWLGNLTWLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDNNI 430
            L L+  +L     IP  L NL +L ++ +   + L GPIP    +L  L  L I+  N+
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 431 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 490
           SG++P                 +   +  D SYN L+G++P  +  L  L  +    N +
Sbjct: 114 SGAIPDFLS------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 491 EGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
            G +       ++L      + N      P             S        +     S 
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS------RNMLEGDASV 215

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNL 610
               +K   +I          + +  +   L+GLDL  N++ G +P  +  L  + +LN+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 611 SHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
           S N+L G IP    NL+  +    +NNK 
Sbjct: 276 SFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 8e-13
 Identities = 63/267 (23%), Positives = 105/267 (39%), Gaps = 30/267 (11%)

Query: 283 SHKRLGMLDISNNNFRG--HIPIEIGDVLPSLYLFNNSMNA-LDGSIPSSLGNMKFLQIL 339
              R+  LD+S  N      IP  + + LP L          L G IP ++  +  L  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 340 DLSNNHLTGEIPEHLAVGCVNLQSLALSNNN------------LQEGLYLNNNSLSGKIP 387
            +++ +++G IP+ L+     +      N                 G+  + N +SG IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 388 RWLGNLTWLQY-IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 446
              G+ + L   + +  N L G IP  F  L+L  +    +     +        + +++
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 447 HLSKNMLHG----------QLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV 496
           HL+KN L                DL  NR+ G++P  +  L  L  L +  NNL GE + 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IP 285

Query: 497 QLCELNQLQLLDLSNNNLH--GPIPPC 521
           Q   L +  +   +NN      P+P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 40/272 (14%), Positives = 73/272 (26%), Gaps = 12/272 (4%)

Query: 108 SPVHLQELYIGSNDLRG--SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLY 165
               +  L +   +L     +P  + NL  L  L +             +  LT +  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 166 LSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDG 225
           +++ +    I        + +   ++ N           SL          +  SG    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 226 VTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHK 285
                                         +      L    +            +    
Sbjct: 168 SYGSFSKLFTS--------MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 286 RLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH 345
                 I          +    +  +L   +   N + G++P  L  +KFL  L++S N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 346 LTGEIPEHLAVGCVNLQSLALSNNNLQEGLYL 377
           L GEIP+            A +NN    G  L
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 41/250 (16%), Positives = 78/250 (31%), Gaps = 36/250 (14%)

Query: 238 LETVELSHIKMNGEFPTWL-LENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNN 296
           +  ++LS + +   +P    L N   L  L +   +       P  +           + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 297 FRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAV 356
                  +    + +L   + S NAL G++P S+ ++  L  +    N ++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 357 GCVNLQSLALSNNNLQEG-----------------------------------LYLNNNS 381
                 S+ +S N L                                            +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 382 LSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL 441
                   +G    L  + + NN + G +P    QL  L  L++S NN+ G +P   +  
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 442 SIKQVHLSKN 451
                  + N
Sbjct: 292 RFDVSAYANN 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 48/266 (18%), Positives = 81/266 (30%), Gaps = 35/266 (13%)

Query: 279 LPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQI 338
           +P+        + +  N               +L +     N L     ++   +  L+ 
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 339 LDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE-------------GLYLNNNSLSGK 385
           LDLS+N     +      G   L +L L    LQE              LYL +N+L   
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 386 IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 445
                 +L  L ++ +  N +       F  L  L  L +  N ++   P  F       
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR------ 198

Query: 446 VHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCEL---- 501
                  L   +   L  N L+    + +  L  L +L L  N    +     C      
Sbjct: 199 ------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-----CRARPLW 247

Query: 502 NQLQLLDLSNNNLHGPIPPCFDNTTL 527
             LQ    S++ +   +P       L
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 40/248 (16%), Positives = 71/248 (28%), Gaps = 21/248 (8%)

Query: 229 PKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLG 288
                   +L  + L    +               +     N  L        H   RL 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 289 MLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTG 348
            L +     +  +   +   L +L       NAL      +  ++  L  L L  N ++ 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 349 EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEG 408
                       L SL            L+ N ++   P    +L  L  + +  N+L  
Sbjct: 168 VPERAF----RGLHSLDRL--------LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 409 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM--------LHGQLKRD 460
                   L  LQ L ++DN       +      +++   S +         L G+  + 
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 461 LSYNRLNG 468
           L+ N L G
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 33/210 (15%), Positives = 55/210 (26%), Gaps = 20/210 (9%)

Query: 504 LQLLDLSNNNLHGPIPPCFDNTT--LYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEI 561
            Q + L  N +       F            ++         F  +   +        ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 562 FEFTTKNIVYIYQGKVLSL------------------LSGLDLSCNKLIGPIPPQIGNLT 603
                     + +   L L                  L  L L  N L         +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 604 RIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 663
            +  L L  N +  +    F  L  ++ L L  N++    PH   +L  L    +  NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 664 SGEIPEWTAQFATFNESSYEGNTFLCGLPL 693
           S    E  A            N ++C    
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 42/264 (15%), Positives = 77/264 (29%), Gaps = 35/264 (13%)

Query: 109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQ----------------------- 145
           P   Q +++  N +            +L IL + SN                        
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 146 -LTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSH 204
               S+  +    L  +  L+L     Q  +        + L+  Y  +N L A    + 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 205 SLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLR 264
                   L+ L L       V    F    H L+ + L   ++    P    +    + 
Sbjct: 150 R---DLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 265 QLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDG 324
                N+    P    +   + L  L +++N +          +   L  F  S + +  
Sbjct: 206 LYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPC 262

Query: 325 SIPSSLGNMKFLQILDLSNNHLTG 348
           S+P  L       +  L+ N L G
Sbjct: 263 SLPQRLAG---RDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 3e-08
 Identities = 64/336 (19%), Positives = 107/336 (31%), Gaps = 34/336 (10%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
              L+L+N  L+  +PE       +L+SL  S N+L E            +P    +L  
Sbjct: 40  AHELELNNLGLS-SLPELPP----HLESLVASCNSLTE------------LPELPQSLKS 82

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN-MLH 454
           L         L    P       LL+ L +S+N +                  + +    
Sbjct: 83  LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 455 GQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNL 514
             L   L +     +  + +  L  L  L   + +      +    L+   ++  +N   
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 515 HGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQ 574
             P        T   + +N               + + N    + E+ +  T   V    
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 575 GKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL 634
              LS L       N     I         ++ LN+S+N LI  +P+    L+    L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIA 311

Query: 635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 670
           S N L  ++P     LK L    V YN L  E P+ 
Sbjct: 312 SFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 71/379 (18%), Positives = 122/379 (32%), Gaps = 59/379 (15%)

Query: 278 RLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQ 337
           RL     ++   L+++N                              S+P    +   L+
Sbjct: 31  RLRDCLDRQAHELELNNLGLS--------------------------SLPELPPH---LE 61

Query: 338 ILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ 397
            L  S N LT E+PE       +L+SL + NNNL+    L                  L+
Sbjct: 62  SLVASCNSLT-ELPELPQ----SLKSLLVDNNNLKALSDLPPL---------------LE 101

Query: 398 YIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 457
           Y+ + NN LE    ++      +  +D +       LP     ++     L +      L
Sbjct: 102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNL 161

Query: 458 KRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCE-LNQLQLLDLSNNNLHG 516
               +    N S+    D    L  ++ G+N LE    +Q    L  +   +     L  
Sbjct: 162 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD 221

Query: 517 PIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK 576
             P            ++   L +        E+    + +    ++     +        
Sbjct: 222 LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 281

Query: 577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN 636
           +   L  L++S NKLI  +P     L R   L  S N L   +P    NLK    L +  
Sbjct: 282 LPPSLEELNVSNNKLIE-LPALPPRLER---LIASFNHLAE-VPELPQNLKQ---LHVEY 333

Query: 637 NKLNGKIPHQLVELKTLEV 655
           N L  + P     ++ L +
Sbjct: 334 NPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 57/333 (17%), Positives = 96/333 (28%), Gaps = 23/333 (6%)

Query: 65  TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG 124
             + LN   L  + E  P L+ L  S ++L         + L S +         +DL  
Sbjct: 41  HELELNNLGLSSLPELPPHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDLPP 98

Query: 125 SLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHS 184
            L +   +   L  L    N     I       L  +  L  S        +        
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 185 RLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELS 244
           +   F       N  + +   L      +   +        +    FL   +    +  +
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 245 HIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIE 304
              +        + +N       L            I S       ++   N   +    
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 305 IGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSL 364
           + D+ PSL   N S N L   +P+       L+ L  S NHL  E+PE       NL+ L
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQL 329

Query: 365 ALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQ 397
            +  N L+E             P    ++  L+
Sbjct: 330 HVEYNPLRE------------FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 233 YHQHDLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDI 292
              +  +  EL       +    +    ++L       ++     R        L  L++
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 293 SNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPE 352
           SNN     +P      L  L    N +      +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-ELPALPPR-LERLIASFNHLA----EVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 353 HLAVGCVNLQSLALSN 368
                  +++ L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 30/237 (12%), Positives = 73/237 (30%), Gaps = 27/237 (11%)

Query: 132 NLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYA 191
            L +   +    + +T +++ +    L  I  L           ++E +   + L     
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLEL 70

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
            +N++       +           L+  +  E      K +     L++++   +     
Sbjct: 71  KDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPS 311
                L   + L+ L L  + +     L   ++ +   +  +  +    +          
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SK 174

Query: 312 LYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSN 368
           L       N +    P  L ++  L  + L NN ++   P        NL  + L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 18/229 (7%)

Query: 439 HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL 498
            P +I  +      L   +K     + +  ++      L  ++ L      +    +  +
Sbjct: 5   QPTAINVIFPDPA-LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGV 59

Query: 499 CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
             LN L  L+L +N +    P            S +   +                  QI
Sbjct: 60  QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 559 HEIFEFTTKNIVYIYQGKVLSLLSGLDL---------SCNKLIGPIPPQIGNLTRIQTLN 609
            ++      + + +    +  + +   L         S           + NL+++ TL 
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 610 LSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 658
              N +  + P   ++L ++  + L NN+++   P  L     L + ++
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 31/245 (12%), Positives = 79/245 (32%), Gaps = 35/245 (14%)

Query: 392 NLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 451
            L     I    +++   +      LD +  L      ++ ++    +  ++  + L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 452 MLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSN 511
            +                    +  L++++ L L  N L+    +   +  +   L  + 
Sbjct: 74  QIT---------------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 512 NNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY 571
                P+    +   LY   +  +++     +        GN +          +K    
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK---- 174

Query: 572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVES 631
                    L+ L    NK+    P  + +L  +  ++L +N +  + P   +N  ++  
Sbjct: 175 ---------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 632 LDLSN 636
           + L+N
Sbjct: 222 VTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 18/201 (8%)

Query: 332 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQ-----------EGLYLNNN 380
            +     +    +++T  + +        + +L+     +             GL L +N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 381 SLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHP 440
            ++   P           +          I        L        +    +  S    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 441 LSIKQVHLSKNM--LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL 498
           L +    ++           + LS      S    +  LS+L+ L    N +    +  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPL 191

Query: 499 CELNQLQLLDLSNNNLHGPIP 519
             L  L  + L NN +    P
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP 212

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 14/234 (5%)

Query: 290 LDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGE 349
           LD++  N    +   +  +   +  F    + +D  +       + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 350 IPEHLAVGCVNLQSLALSNNNLQEGL-----------YLNNNSLSGKIPRWLGNLTWLQY 398
               +   C  LQ+L+L    L + +            LN +  SG     L  L     
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 399 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 458
            +   N        E      +  +  +   ++ S        S     + +      L 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 459 RDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
              S    N    ++          +    ++  E L++L E+  L+ L +   
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 35/253 (13%), Positives = 82/253 (32%), Gaps = 16/253 (6%)

Query: 419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR----------DLSYNRLNG 468
           L Q LD++  N+   +        +      ++ +   L            DLS + +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 469 -SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 527
            ++   +   S+L +L L    L   ++  L + + L  L+LS  +           ++ 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 528 ----YESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSG 583
                 + S      E+          +   +  +    +   K+ +     +  +L+  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSH-NDLIGLIPSTFSNLKHVESLDLSNNKLNGK 642
                  L      +   L  +Q L+LS   D+I         +  +++L +     +G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 643 IPHQLVELKTLEV 655
           +      L  L++
Sbjct: 241 LQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 37/287 (12%), Positives = 76/287 (26%), Gaps = 24/287 (8%)

Query: 240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRG 299
           T++L+   ++ +    LL       +                 S  R+  +D+SN+    
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEV 60

Query: 300 HIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNH-LTGEIPEHLAVGC 358
                I      L   +     L   I ++L     L  L+LS     +    + L   C
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 359 VNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLD 418
             L  L LS        ++              NL+  +  +  ++              
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 419 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSY-NRLNGSIPDWVDGL 477
            L    +  N+         +   +                 LS    +       +  +
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHL----------------SLSRCYDIIPETLLELGEI 224

Query: 478 SQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDN 524
             L  L +     +G + +       L  L ++ ++      P   N
Sbjct: 225 PTLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 45/287 (15%), Positives = 95/287 (33%), Gaps = 21/287 (7%)

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
           L L   +L   +   L +   +     P + ++ P+   F    + Q +D+S++ I  S 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEVST 62

Query: 435 PSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV 494
                    K  +LS           L   RL+  I + +   S L  L L   +   E 
Sbjct: 63  LHGILSQCSKLQNLS-----------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 495 LVQLCELNQLQLLDLSNN----NLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESP 550
            +Q    +  +L +L+ +         +     + +   +  N S   +  +        
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171

Query: 551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLS-CNKLIGPIPPQIGNLTRIQTLN 609
           +        ++ +          +   L+ L  L LS C  +I     ++G +  ++TL 
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231

Query: 610 LSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656
           +      G +      L H   L ++ +         +   K  E++
Sbjct: 232 VFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 27/277 (9%), Positives = 74/277 (26%), Gaps = 30/277 (10%)

Query: 87  LSLSYSTLGTNS-SRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQ 145
           L L+   L  +   R+L +G+ +           + +   L    +    ++ +D+S++ 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA------FRCPRSFMDQPLAEHFSPF-RVQHMDLSNSV 57

Query: 146 LTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHS 205
           +  S     L   + ++ L L                          ++ +   + ++ +
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRL---------------------SDPIVNTLAKNSN 96

Query: 206 LTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWLLENNTKLRQ 265
           L   N            +  ++    L   +     + +   +                 
Sbjct: 97  LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156

Query: 266 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGS 325
               N        L       + +    +   +     E   +    +L  +    +   
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216

Query: 326 IPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 362
               LG +  L+ L +    +     + L     +LQ
Sbjct: 217 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 4/186 (2%)

Query: 5   TNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMS 64
             ++++ L  S + +S L  I S    L+NLS+    ++  +         +L  L +  
Sbjct: 46  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSG 104

Query: 65  TRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIG--SNDL 122
                +   LQ +  S   L  L+LS+    T     +     S    Q    G   N  
Sbjct: 105 CSG-FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 123 RGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFN 182
           +  L   +    +L  LD+S + +  +        L  ++ L LS  +  IP +L  L  
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 183 HSRLKT 188
              LKT
Sbjct: 224 IPTLKT 229

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 12/211 (5%)

Query: 453 LHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN 512
           +   L+ +     L  ++P  +      + L L  N L    L  L    +L  L+L   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 513 NLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYI 572
            L                     +LD       S+      +         F     + +
Sbjct: 66  ELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 573 YQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESL 632
              + L  L  L L  N+L    P  +    +++ L+L++N+L  L     + L+++++L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 633 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 663
            L  N L   IP        L    +  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 49/220 (22%)

Query: 329 SLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPR 388
            +  +     ++    +LT  +P  L               +    L+L+ N L      
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL-------------PKDTTI-LHLSENLLYTFSLA 49

Query: 389 WLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN-------------------- 428
            L   T L  + +    L          +     L  +                      
Sbjct: 50  TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 429 -NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDL------------SYNRLNGSIPDWVD 475
             ++         L   Q    K      L   L            + N L       ++
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 476 GLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLH 515
           GL  L  L+L  N+L   +       + L    L  N   
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 40/242 (16%), Positives = 60/242 (24%), Gaps = 40/242 (16%)

Query: 131 TNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFY 190
           + + S   ++     LT    + P         L+LS N      SL  L  ++RL    
Sbjct: 7   SKVASHLEVNCDKRNLT----ALPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLN 61

Query: 191 ADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNG 250
            D  E         +    +  L  L       + +     L       TV         
Sbjct: 62  LDRAE--------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 251 EFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLP 310
             P   L    +                                 N    +P  +    P
Sbjct: 114 SLPLGALRGLGE-------------------------LQELYLKGNELKTLPPGLLTPTP 148

Query: 311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNN 370
            L   + + N L       L  ++ L  L L  N L   IP+    G   L    L  N 
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNP 206

Query: 371 LQ 372
             
Sbjct: 207 WL 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 18/208 (8%)

Query: 439 HPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL 498
            P  IKQ+          +K +L    +  ++    + L+ +  +I  +++++   +  +
Sbjct: 10  VPTPIKQIFSDDA-FAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGI 64

Query: 499 CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQI 558
             L  +  L L+ N L    P        +     +   D                   I
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 559 HEIFEFTT----------KNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTL 608
            +I                N +                  +  I  I P +  LT++Q L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183

Query: 609 NLSHNDLIGLIPSTFSNLKHVESLDLSN 636
            LS N +  L     + LK+++ L+L +
Sbjct: 184 YLSKNHISDL--RALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 42/334 (12%), Positives = 88/334 (26%), Gaps = 33/334 (9%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSG 384
           S+ + L     ++ + LS N +  E    L+    + + L        E    ++     
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL--------EIAEFSDIFTGR 73

Query: 385 KIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIK 444
                   L  L   ++    L      +                    +        ++
Sbjct: 74  VKDEIPEALRLLLQALLKCPKLHTVRLSDNAF---------GPTAQEPLIDFLSKHTPLE 124

Query: 445 QVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQL 504
            ++L  N L  Q    ++      ++         L  +I G N LE   + +  +  Q 
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ- 183

Query: 505 QLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEF 564
                S+  LH               +     L    E+                 +   
Sbjct: 184 -----SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 565 TTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDL-----IGLI 619
                     G    LLS    +                 +QTL L +N++       L 
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294

Query: 620 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 653
                 +  +  L+L+ N+   +    + E++ +
Sbjct: 295 TVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 22/313 (7%)

Query: 83  SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG----SLPWCMTNLTSLRI 138
           S++  SL    + T   + +   L     ++E+ +  N +       L   + +   L I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 139 LDVSSNQLTGSISSSPLIHLTSIEKLYLSNN-------HFQIPISLEPLFNHSRLKTFYA 191
            + S           P      ++ L                  + +        K    
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 192 DNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGE 251
           ++  L+       +       L  L+++   ++       +  ++ LE   +       +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 252 FPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSH-KRLGMLDISNNNFRGHIPIEIGDVLP 310
               L         +            L      K L + D +  +             P
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 311 SLYLFNNSMNALDGSIPSSLGNM------KFLQILDLSNNHLTGE----IPEHLAVGCVN 360
           +L     +   L     +++ +         LQ L L  N +  +    +   +     +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 361 LQSLALSNNNLQE 373
           L  L L+ N   E
Sbjct: 304 LLFLELNGNRFSE 316

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 8e-07
 Identities = 44/447 (9%), Positives = 102/447 (22%), Gaps = 17/447 (3%)

Query: 237 DLETVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLG--GPFRLP--IHSHKRLGMLDI 292
           D++++++   +++      LL    + + + L +  L       +   +  +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 293 SNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPE 352
            +N         +   L +       ++ L     +  G       L          + +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLS-LQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 353 HLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV 412
           +L              +       L     S          + L+              +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPD 472
               + +L            +L      ++         ++  +          N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 473 WVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYS 532
            +  L                    +       L  +              N    E   
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 533 NSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLI 592
                  +          +             +            +S     D    +  
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-- 359

Query: 593 GPIPPQIGNLTRIQTLNLSHNDL----IGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 648
                     + ++ L L+  D+       + +T      +  LDLSNN L      QLV
Sbjct: 360 -LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 649 E-----LKTLEVFSVAYNNLSGEIPEW 670
           E        LE   +     S E+ + 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 4e-06
 Identities = 54/454 (11%), Positives = 108/454 (23%), Gaps = 30/454 (6%)

Query: 83  SLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRG----SLPWCMTNLTSLRI 138
            ++ L +    L       L   L      Q + +    L       +   +    +L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 139 LDVSSNQLTG----SISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN 194
           L++ SN+L       +          I+KL L N                 L T    + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPT 254
             N        L                                    L+ +        
Sbjct: 120 SDNLLGDAGLQLLCEGLLDP-------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 172

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
            L  +N  + +  +     G           +L    ++++N R    I           
Sbjct: 173 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 232

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEG 374
             ++     G      G +     L        G   +     C  L++          G
Sbjct: 233 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 292

Query: 375 LYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 434
             L +          L     L+ + + +          F  +       +     +  L
Sbjct: 293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 352

Query: 435 PSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNG----SIPDWVDGLSQLSHLILGHNNL 490
                    + +    ++L       L+   ++     S+   +     L  L L +N L
Sbjct: 353 EDAGVRELCQGLGQPGSVLR---VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 491 EGEVLVQLCE-----LNQLQLLDLSNNNLHGPIP 519
               ++QL E        L+ L L +      + 
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 309 LPSLYLFNNSMNALD-GSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALS 367
           L  L+L +  ++     S+ ++L     L+ LDLSNN L       L       +S+   
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV------ESVRQP 424

Query: 368 NNNLQEGLYLNNNSLSGKIPRWLGNL 393
              L++ L L +   S ++   L  L
Sbjct: 425 GCLLEQ-LVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 49/458 (10%), Positives = 117/458 (25%), Gaps = 17/458 (3%)

Query: 6   NLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVH---GQGFPHFKSLEHLGM 62
           +++ L +    L  +    +  +    + + +  C +                +L  L +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 63  MSTRI--ALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN 120
            S  +        LQ +      ++ LSL    L      +L   L +   LQEL++  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 121 DLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPL 180
            L  +    +          +   QL     S+      +       +       + +  
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 181 FNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLET 240
               R+      ++    E  +  S    +     L      +  +       ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 241 VELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGH 300
           +      +             +    +     L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 301 IPIEIGDVLPSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 360
           +   + +    L        +   +  S   ++       L               G   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI---SNNRLEDAGVRE 359

Query: 361 LQSLALSNNNLQEGLYLNNNSLSGK----IPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ 416
           L        ++   L+L +  +S      +   L     L+ + + NN L     ++  +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 417 -----LDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 449
                  LL+ L + D   S  +      L   +  L 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-04
 Identities = 55/454 (12%), Positives = 128/454 (28%), Gaps = 16/454 (3%)

Query: 210 NFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPTWL---LENNTKLRQL 266
           +  +  L +         + + L      + V L    +       +   L  N  L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 267 SLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSMNALDGSI 326
           +L ++ LG      +    +     I   + +       G  + S  L            
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 327 PSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKI 386
            + LG+     + +   +         L    ++  S     + L+        ++S   
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 387 PRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV 446
               G     Q +      LE                +  D     +  +    L++   
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGV----TSDNCRDLCGIVASKASLRELALGSN 236

Query: 447 HLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQL 506
            L    +       L  +    ++  W  G++      L       E L +L        
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 507 LDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTT 566
            + +       + P     +L+    + ++           ++      +  +   E   
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 567 KNIVYIYQGKVLSLLSGLDLSCNKL----IGPIPPQIGNLTRIQTLNLSHNDL-----IG 617
              +    G+  S+L  L L+   +       +   +     ++ L+LS+N L     + 
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 618 LIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 651
           L+ S       +E L L +   + ++  +L  L+
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 581 LSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPS-TFSNLKHVESLDLSNNKL 639
            SGL  + +  +      +     +  L + +   +  +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 693
               P        L   ++++N L   +   T Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 336 LQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTW 395
              L  + +    +   HL  G  NL  L + N             L     R L  L  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQH----------LQHLELRDLRGLGE 57

Query: 396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 454
           L+ + +  + L    P  F     L  L++S N +          LS++++ LS N LH
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 597 PQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 656
            Q  N  R + L+L     I +I +  + L   +++D S+N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 657 SVAYNNLSGEIPEW 670
            V  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 29/220 (13%), Positives = 54/220 (24%), Gaps = 15/220 (6%)

Query: 420 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLS 478
              L      +       F     ++++ +S+N +   ++ D+  N              
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--- 87

Query: 479 QLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLD 538
                    NNL          L  LQ L +SN  +         ++            D
Sbjct: 88  --------ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ---D 136

Query: 539 EQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQ 598
                     S  G   + +           ++        L        N L       
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196

Query: 599 IGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNK 638
               +    L++S   +  L      NLK + +    N K
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 4/211 (1%)

Query: 134 TSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADN 193
            +   L     +L   I          +EK+ +S N     I  +   N  +L     + 
Sbjct: 29  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 194 NELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFP 253
                 I        PN Q   +S +               +  L+  +  +I       
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 254 TWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLY 313
                 + +   L L  + +        +  +   +    NNN    +P ++        
Sbjct: 148 FV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPV 204

Query: 314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNN 344
           + + S   +       L N+K L+     N 
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 10/239 (4%)

Query: 135 SLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNN 194
           S R+     +++T      P     +  +L       +    ++             + +
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEIS 61

Query: 195 ELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLETVELSHIKMNGEFPT 254
           + +        + +   +L  + +          P+   +  +L+ + +S+  +      
Sbjct: 62  QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 255 WLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYL 314
             + +  K+      N ++    R          ++   N N    I     +      L
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQE 373
             +  N L+              ILD+S   +   +P +       L++   S  NL++
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA--RSTYNLKK 237

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 24/205 (11%), Positives = 48/205 (23%), Gaps = 3/205 (1%)

Query: 460 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIP 519
                +L         G   L  + +  N++   +   +                +    
Sbjct: 35  RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 94

Query: 520 PCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLS 579
                  L        S +   +    +       +  +          I       +  
Sbjct: 95  NPEAFQNLPNLQYLLIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 153

Query: 580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKL 639
               L L+ N +              +     +N+L  L    F        LD+S  ++
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213

Query: 640 NGKIPHQLVELKTLEVFSVAYNNLS 664
           +    + L  LK L   S    NL 
Sbjct: 214 HSLPSYGLENLKKLRARST--YNLK 236

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGL----------YLNNNSLSGKI 386
           ++L L++  LT  +  HL    + +  L LS+N L+              L  +  + + 
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 387 PRWLGNLTWLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISG 432
              + NL  LQ +++ NN L+             L +L++  N++  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 584 LDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPS---------------------T 622
           L L+   L   +   +  L  +  L+LSHN L  L P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 623 FSNLKHVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE 666
            +NL  ++ L L NN+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 325 SIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNL------------- 371
            IP  +        L L++N L     + L     +L  L L  N L             
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 372 QEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 431
            + L L  N +     +    L  L+ + + +N +   +P  F  L+ L  L+++ N  +
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 432 GSLPSCFHPLSIKQVHLSKNM--------LHGQLKRDLSYNRLNGSIPD 472
            +    +    +++  L+           +     +DL ++    S  +
Sbjct: 140 CNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSEN 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	776
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.25

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.9e-29  Score=257.44  Aligned_cols=260  Identities=34%  Similarity=0.543  Sum_probs=198.3

Q ss_pred             CCCEEEccCCcCCC--cCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCc
Q 041867          335 FLQILDLSNNHLTG--EIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPV  412 (776)
Q Consensus       335 ~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~  412 (776)
                      +++.|++++|.+.+  .+|..+. .+++|++|+++++          |.+.|.+|..|+++++|++|++++|++.+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~----------N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGI----------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEE----------TTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCccccccccccc----------cccccccccccccccccchhhhccccccccccc
Confidence            45566666666554  2344433 3555555553220          223334455555555555555555555554454


Q ss_pred             ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCc
Q 041867          413 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG  492 (776)
Q Consensus       413 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  492 (776)
                      .+..+.+|+.+++++|.+.                                    +.+|..+..+++++.+++++|.+.+
T Consensus       120 ~~~~~~~L~~l~l~~N~~~------------------------------------~~~p~~l~~l~~L~~l~l~~n~l~~  163 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRISG  163 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccchhhhccccccccccc------------------------------------ccCchhhccCcccceeecccccccc
Confidence            4555555555555544433                                    3667778899999999999999999


Q ss_pred             cchhhhcCCCCC-CEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEE
Q 041867          493 EVLVQLCELNQL-QLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVY  571 (776)
Q Consensus       493 ~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (776)
                      ..|..+..+..+ +.+++++|++++..|..+..+                                              
T Consensus       164 ~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l----------------------------------------------  197 (313)
T d1ogqa_         164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------------------------------------------  197 (313)
T ss_dssp             ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC----------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccc----------------------------------------------
Confidence            899888888876 899999999998887766543                                              


Q ss_pred             EeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCC
Q 041867          572 IYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK  651 (776)
Q Consensus       572 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  651 (776)
                              ....++++++...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|+.+..++
T Consensus       198 --------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~  268 (313)
T d1ogqa_         198 --------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             --------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             --------ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCC
Confidence                    35579999999999999999999999999999999987655 688899999999999999999999999999


Q ss_pred             CCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCC
Q 041867          652 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR  697 (776)
Q Consensus       652 ~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~  697 (776)
                      +|++|+|++|+|+|.+|+ +..+++|+.+++.+|+.+|+.|++.|.
T Consensus       269 ~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         269 FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             TCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999997 578999999999999999999988874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.7e-25  Score=232.25  Aligned_cols=342  Identities=23%  Similarity=0.276  Sum_probs=166.7

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCC
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLT  159 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~  159 (776)
                      .+.+|++|+++++.|++    +  ..+..+++|++|+|++|++++..  .++++++|++|++++|.+. .+++  +..++
T Consensus        42 ~l~~l~~L~l~~~~I~~----l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~  110 (384)
T d2omza2          42 DLDQVTTLQADRLGIKS----I--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLT  110 (384)
T ss_dssp             HHTTCCEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred             HhCCCCEEECCCCCCCC----c--cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccc-cccc--ccccc
Confidence            34566666666666653    2  24566666777777777666432  2666677777777777665 3432  66666


Q ss_pred             CCCEEeccCCccccccCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867          160 SIEKLYLSNNHFQIPISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE  239 (776)
Q Consensus       160 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  239 (776)
                      +|+.|+++++.+++.   ........+.......+.+...........   ........      .......+...+...
T Consensus       111 ~L~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~  178 (384)
T d2omza2         111 NLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISDISALSGLTS---LQQLSFGN------QVTDLKPLANLTTLE  178 (384)
T ss_dssp             TCCEEECCSSCCCCC---GGGTTCTTCSEEEEEEEEECCCGGGTTCTT---CSEEEEEE------SCCCCGGGTTCTTCC
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccccccc---cccccccc------ccchhhhhccccccc
Confidence            677777666665522   123333444444444443322111110000   00000000      000111222233333


Q ss_pred             EEEcCCCCCcccCChHHhhcCCCCcEEEccCCCCcCcCCCCCCCCCCcCEEEceeccCcccCChhhhccCcccceeeccc
Q 041867          240 TVELSHIKMNGEFPTWLLENNTKLRQLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPIEIGDVLPSLYLFNNSM  319 (776)
Q Consensus       240 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~l~~  319 (776)
                      ......+...  .... ...+++++.+.+++|.+.+..+  +..+++|+.|++++|.++. ++ .+. .+++|+.+++++
T Consensus       179 ~~~~~~~~~~--~~~~-~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~  250 (384)
T d2omza2         179 RLDISSNKVS--DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLA-SLTNLTDLDLAN  250 (384)
T ss_dssp             EEECCSSCCC--CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCSEEECCS
T ss_pred             cccccccccc--cccc-cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhh-cccccchhcccc
Confidence            3333333222  1111 1455555555555555554322  2334455555555555442 11 111 134444455544


Q ss_pred             ccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEE
Q 041867          320 NALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYI  399 (776)
Q Consensus       320 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L  399 (776)
                      |.+.+..  .+..+++|++|+++++.+. .++.                                     +..++.++.+
T Consensus       251 n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~-------------------------------------~~~~~~l~~l  290 (384)
T d2omza2         251 NQISNLA--PLSGLTKLTELKLGANQIS-NISP-------------------------------------LAGLTALTNL  290 (384)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCC-CCGG-------------------------------------GTTCTTCSEE
T ss_pred             CccCCCC--cccccccCCEeeccCcccC-CCCc-------------------------------------cccccccccc
Confidence            4444321  2344444555555544444 2222                                     3344444444


Q ss_pred             eccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCcc
Q 041867          400 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQ  479 (776)
Q Consensus       400 ~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~  479 (776)
                      +++.|.+.+.  ..+..+++++.|++++|++.+..+ ...+++|++|++++|+++              .++ .+.++++
T Consensus       291 ~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~--------------~l~-~l~~l~~  352 (384)
T d2omza2         291 ELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVS--------------DVS-SLANLTN  352 (384)
T ss_dssp             ECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC--------------CCG-GGGGCTT
T ss_pred             cccccccccc--cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCC--------------CCh-hHcCCCC
Confidence            4444444421  224444444555555554443221 112444555544444332              122 4778899


Q ss_pred             CCEEEcccccCCccchhhhcCCCCCCEEeCCCC
Q 041867          480 LSHLILGHNNLEGEVLVQLCELNQLQLLDLSNN  512 (776)
Q Consensus       480 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  512 (776)
                      |++|++++|++++..|  +.++++|++|+|++|
T Consensus       353 L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999987654  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=7e-25  Score=232.09  Aligned_cols=96  Identities=22%  Similarity=0.262  Sum_probs=71.6

Q ss_pred             EccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEecc
Q 041867           88 SLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLS  167 (776)
Q Consensus        88 ~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  167 (776)
                      .++.+.+++   .+.   ...+.+|++|++++++|+..  +++..+++|++|++++|+++ .++.  ++++++|++|+++
T Consensus        28 ~l~~~~~~~---~~~---~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~   96 (384)
T d2omza2          28 VLGKTNVTD---TVS---QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMN   96 (384)
T ss_dssp             HTTCSSTTS---EEC---HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC
T ss_pred             HhCCCCCCC---ccC---HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccc
Confidence            555555554   232   34567899999999999854  46888999999999999998 6654  8899999999999


Q ss_pred             CCccccccCcccccCCCCCcEEEcccCccc
Q 041867          168 NNHFQIPISLEPLFNHSRLKTFYADNNELN  197 (776)
Q Consensus       168 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  197 (776)
                      +|.+.+.   ..+..+++|+.|+++++.+.
T Consensus        97 ~n~i~~i---~~l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          97 NNQIADI---TPLANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             SSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccc---cccccccccccccccccccc
Confidence            9988732   23667777777777666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.1e-26  Score=228.64  Aligned_cols=244  Identities=20%  Similarity=0.216  Sum_probs=142.7

Q ss_pred             CCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCccccccCChhh
Q 041867          396 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWV  474 (776)
Q Consensus       396 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~  474 (776)
                      +++|+|++|+++.+.+.+|.+++.|++|++++|++....+..+. ...++.+....            .+.++...+..|
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~------------~~~~~~l~~~~~  101 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD------------NAQLRSVDPATF  101 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS------------CTTCCCCCTTTT
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccc------------ccccccccchhh
Confidence            44444444444444444444444555555554444433333222 22222222111            122223445567


Q ss_pred             ccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCc
Q 041867          475 DGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNV  554 (776)
Q Consensus       475 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (776)
                      .++++|+.|++++|.+....+..+...++|+.+++++|+++++.+..|..++                            
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~----------------------------  153 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG----------------------------  153 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------------
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc----------------------------
Confidence            7777777777777777766666677777777777777777766666665433                            


Q ss_pred             cccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEEC
Q 041867          555 EKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  634 (776)
                                               +|++|++++|.+++..+.+|.++++|+.+++++|+++++.|..|.++++|++||+
T Consensus       154 -------------------------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         154 -------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             -------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -------------------------chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence                                     6777777777777666777777777777777777777777777777777777777


Q ss_pred             cCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041867          635 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERD  712 (776)
Q Consensus       635 s~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~  712 (776)
                      ++|++.+..+..|..+++|+.|++++|++.|..+.. .-...++......+..       .|..|...++..+.....
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~-------~C~~p~~l~g~~l~~l~~  278 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEV-------PCSLPQRLAGRDLKRLAA  278 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCC-------BEEESGGGTTCBGGGSCG
T ss_pred             cccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCce-------EeCCchHHcCCccccCCH
Confidence            777777666667777777777777777776544321 1112233333333332       466666666654444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=2.3e-26  Score=235.63  Aligned_cols=235  Identities=31%  Similarity=0.489  Sum_probs=142.4

Q ss_pred             CCccCCCCCCCCEEEccC-CcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCC
Q 041867          326 IPSSLGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNN  404 (776)
Q Consensus       326 ~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  404 (776)
                      +|..+.++++|++|++++ |.+.|.+|..+. .+++|++|++++|+           +.+..+..+..+.+|+++++++|
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~-----------l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTN-----------VSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEEC-----------CEEECCGGGGGCTTCCEEECCSS
T ss_pred             CChHHhcCccccccccccccccccccccccc-cccccchhhhcccc-----------ccccccccccchhhhcccccccc
Confidence            344555555555555554 455555555443 35555555533333           23344555555666666666666


Q ss_pred             ccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccC-CEE
Q 041867          405 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQL-SHL  483 (776)
Q Consensus       405 ~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L-~~L  483 (776)
                      .+.+.+|..+..++.++.+++++|.+.+.                                    +|..+..+..+ +.+
T Consensus       136 ~~~~~~p~~l~~l~~L~~l~l~~n~l~~~------------------------------------ip~~~~~l~~l~~~l  179 (313)
T d1ogqa_         136 ALSGTLPPSISSLPNLVGITFDGNRISGA------------------------------------IPDSYGSFSKLFTSM  179 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEE------------------------------------CCGGGGCCCTTCCEE
T ss_pred             cccccCchhhccCcccceeeccccccccc------------------------------------ccccccccccccccc
Confidence            66666666666666666666666655532                                    22333333333 455


Q ss_pred             EcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceee
Q 041867          484 ILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFE  563 (776)
Q Consensus       484 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (776)
                      ++++|++++..+..+..+.. ..++++++...+..|..+..++                                     
T Consensus       180 ~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~-------------------------------------  221 (313)
T d1ogqa_         180 TISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK-------------------------------------  221 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS-------------------------------------
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccc-------------------------------------
Confidence            55555555555555554433 3566666666655554444322                                     


Q ss_pred             eeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcC
Q 041867          564 FTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKI  643 (776)
Q Consensus       564 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  643 (776)
                                      +++.+++++|.+.+.+| .+..+++|+.|+|++|++++.+|..|.++++|++|+|++|++++.+
T Consensus       222 ----------------~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         222 ----------------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             ----------------CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             ----------------ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence                            56677777777765443 5677778888888888888777888888888888888888888777


Q ss_pred             CccccCCCCCCEEecccccCc
Q 041867          644 PHQLVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       644 ~~~l~~l~~L~~L~l~~N~l~  664 (776)
                      |+ +..+++|+.+++++|+..
T Consensus       285 P~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         285 PQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CC-STTGGGSCGGGTCSSSEE
T ss_pred             CC-cccCCCCCHHHhCCCccc
Confidence            74 467778888888888743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.5e-24  Score=216.87  Aligned_cols=109  Identities=27%  Similarity=0.319  Sum_probs=62.7

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      +|++|++++|..++..+..|.+++.+++|++++|.+.++.+..|.++++|++|+|++|+|+ .+|+++..+++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            4556666666665555566666666666666666666665566666666666666666665 345556666666666666


Q ss_pred             cccCcccCCCcc------ccccccCcccccCCCCCC
Q 041867          660 YNNLSGEIPEWT------AQFATFNESSYEGNTFLC  689 (776)
Q Consensus       660 ~N~l~~~~p~~~------~~~~~l~~~~~~~n~~~c  689 (776)
                      +|+|+......|      ....+++.++++||||.+
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            666654322222      223445556666666544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.2e-24  Score=215.58  Aligned_cols=268  Identities=23%  Similarity=0.267  Sum_probs=213.6

Q ss_pred             ccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccc
Q 041867          311 SLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWL  390 (776)
Q Consensus       311 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~  390 (776)
                      ..+.++.+++.++ .+|..+.  +++++|++++|+++ .+|...|.++++|++|++++|.           +....|.+|
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~-----------~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK-----------ISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC-----------CCCBCTTTT
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccccccccccc-----------ccccchhhh
Confidence            5677888888887 5576663  68999999999998 8888878889999999955554           445667889


Q ss_pred             cCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCC-CCcccEEEcCCcccCcccccccCCcccccc
Q 041867          391 GNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYNRLNGS  469 (776)
Q Consensus       391 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  469 (776)
                      .++++|++|++++|+++.... .  ....++.|++++|.+....+..+. ......++...+...           ....
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~-~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~-----------~~~~  141 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPE-K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK-----------SSGI  141 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCS-S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC-----------GGGB
T ss_pred             hCCCccCEecccCCccCcCcc-c--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc-----------ccCC
Confidence            999999999999999885433 2  235788899999988876655554 556666766665432           2234


Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      .+..+.++++|+.+++++|.+..... .  .+++|+.|++++|.+.+..+..|..++                       
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~l~~-~--~~~~L~~L~l~~n~~~~~~~~~~~~~~-----------------------  195 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLN-----------------------  195 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCT-----------------------
T ss_pred             CccccccccccCccccccCCccccCc-c--cCCccCEEECCCCcCCCCChhHhhccc-----------------------
Confidence            56678889999999999999885432 2  357899999999998877777666544                       


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV  629 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  629 (776)
                                                    .++.|++++|.+.+..+..+.++++|++|+|++|+|+.+ |.+|..+++|
T Consensus       196 ------------------------------~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L  244 (305)
T d1xkua_         196 ------------------------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYI  244 (305)
T ss_dssp             ------------------------------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSC
T ss_pred             ------------------------------cccccccccccccccccccccccccceeeeccccccccc-ccccccccCC
Confidence                                          799999999999999899999999999999999999965 6789999999


Q ss_pred             CEEECcCCccCCcCCccc------cCCCCCCEEecccccCc
Q 041867          630 ESLDLSNNKLNGKIPHQL------VELKTLEVFSVAYNNLS  664 (776)
Q Consensus       630 ~~L~Ls~N~l~~~~~~~l------~~l~~L~~L~l~~N~l~  664 (776)
                      ++|+|++|+|+.+....|      ..+++|+.|++++|+++
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999999996644443      45788999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-24  Score=215.18  Aligned_cols=253  Identities=23%  Similarity=0.255  Sum_probs=182.4

Q ss_pred             eecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCC
Q 041867          315 FNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLT  394 (776)
Q Consensus       315 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~  394 (776)
                      ++.+++.++ .+|..+.  +.+++|+|++|+++ .+|...|.++++|++|++++|++           ....+..+..++
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l-----------~~i~~~~~~~~~   80 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-----------ARIDAAAFTGLA   80 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-----------CEECTTTTTTCT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccc-----------cccccccccccc
Confidence            344444454 3444332  44566666666665 56655555666666666433333           334444555555


Q ss_pred             CCCEEecc-CCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          395 WLQYIIMP-NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       395 ~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      .++.+... .+.+....+..|.++++|+.|++++|.+..                                    ..+..
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~------------------------------------~~~~~  124 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE------------------------------------LGPGL  124 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC------------------------------------CCTTT
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCccccc------------------------------------ccccc
Confidence            55555443 344544455556666666666665555442                                    33445


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      +...++|+.+++++|.++++.+..|..+++|+.|++++|++.+..+.+|.+++                           
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~---------------------------  177 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH---------------------------  177 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred             cchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc---------------------------
Confidence            67788999999999999988888999999999999999999988888887755                           


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                                +|+.+++++|++++..|..|..+++|++|++++|++.++.+..|..+++|+.|+
T Consensus       178 --------------------------~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~  231 (284)
T d1ozna_         178 --------------------------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR  231 (284)
T ss_dssp             --------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred             --------------------------ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence                                      899999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCccCCcCCccccCCCCCCEEecccccCcccCCCccc
Q 041867          634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA  672 (776)
Q Consensus       634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~  672 (776)
                      +++|++...-+.. .-...++.+....+++.|..|..+.
T Consensus       232 l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         232 LNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             CCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence            9999998543321 1123456677778889988887554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=208.39  Aligned_cols=168  Identities=27%  Similarity=0.272  Sum_probs=136.4

Q ss_pred             cCChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccC
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIE  548 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (776)
                      ..+.+|.++++|++|+|++|+++...  .+..+++|++|++++|++.+. +..+..                        
T Consensus        46 l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~------------------------   98 (266)
T d1p9ag_          46 FSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQT------------------------   98 (266)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSC-CCCTTT------------------------
T ss_pred             cCHHHhhccccccccccccccccccc--ccccccccccccccccccccc-cccccc------------------------
Confidence            44456778888888888888887543  356788888999988888743 334443                        


Q ss_pred             CCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCC
Q 041867          549 SPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKH  628 (776)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  628 (776)
                                                   +++|+.|++++|.+.+..+..+..+.+++.|++++|.++.+.+..+..+++
T Consensus        99 -----------------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~  149 (266)
T d1p9ag_          99 -----------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK  149 (266)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             -----------------------------ccccccccccccccceeeccccccccccccccccccccceecccccccccc
Confidence                                         337888899988888888888888889999999999988888888888889


Q ss_pred             CCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867          629 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      |+.|++++|++++..++.|..+++|++|+|++|+|+ .+|..+..+..++.++++||||.|+|..
T Consensus       150 l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             chhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            999999999998888888888889999999999988 6776677788888889999999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-22  Score=199.21  Aligned_cols=180  Identities=21%  Similarity=0.186  Sum_probs=138.6

Q ss_pred             CCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChh
Q 041867          394 TWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDW  473 (776)
Q Consensus       394 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~  473 (776)
                      +++++|+|++|.+++..+.+|.++++|++|++++|+++...                                      .
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--------------------------------------~   72 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------------------------------------V   72 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--------------------------------------C
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--------------------------------------c
Confidence            34566666666666555556666666666666666655211                                      1


Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      +..+++|+.|++++|+++.. +..+..+++|+.|++++|.+.+..+..+..+                            
T Consensus        73 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l----------------------------  123 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGL----------------------------  123 (266)
T ss_dssp             CSCCTTCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTC----------------------------
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccceeeccccccc----------------------------
Confidence            23456777777777777643 4466777888888888888776666555443                            


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                               .+++.|++++|.+....+..+..+++|+.|++++|+++++.++.|..+++|++|+
T Consensus       124 -------------------------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_         124 -------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             -------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             -------------------------cccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence                                     3788899999999888888889999999999999999999999999999999999


Q ss_pred             CcCCccCCcCCccccCCCCCCEEecccccCccc
Q 041867          634 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  666 (776)
Q Consensus       634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  666 (776)
                      |++|+|+ .+|+.+..+++|+.|+|++|++.|.
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            9999998 7788888899999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=2.4e-16  Score=163.42  Aligned_cols=77  Identities=32%  Similarity=0.416  Sum_probs=52.0

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      .....++..+.+.+.    ...+++|++|+|++|+++.+ |.   .+++|+.|+|++|+|+ .+|+.   +++|+.|+++
T Consensus       265 ~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~  332 (353)
T d1jl5a_         265 NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVE  332 (353)
T ss_dssp             TCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             hhcccccccCccccc----cccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence            345566666665532    23456788888888888754 33   3567888888888887 45543   4578888888


Q ss_pred             cccCcccCCC
Q 041867          660 YNNLSGEIPE  669 (776)
Q Consensus       660 ~N~l~~~~p~  669 (776)
                      +|+++ .+|.
T Consensus       333 ~N~L~-~lp~  341 (353)
T d1jl5a_         333 YNPLR-EFPD  341 (353)
T ss_dssp             SSCCS-SCCC
T ss_pred             CCcCC-CCCc
Confidence            88887 4555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.6e-15  Score=157.14  Aligned_cols=137  Identities=28%  Similarity=0.352  Sum_probs=72.0

Q ss_pred             CCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCCCC
Q 041867           31 SLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCSPV  110 (776)
Q Consensus        31 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~  110 (776)
                      ++++|+|++++++ .+|. .   .++|++|++++|+|  + .+|.    .+.+|++|++++|.++.    ++.  +  .+
T Consensus        39 ~l~~LdLs~~~L~-~lp~-~---~~~L~~L~Ls~N~l--~-~lp~----~~~~L~~L~l~~n~l~~----l~~--l--p~   98 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE-L---PPHLESLVASCNSL--T-ELPE----LPQSLKSLLVDNNNLKA----LSD--L--PP   98 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS-C---CTTCSEEECCSSCC--S-SCCC----CCTTCCEEECCSSCCSC----CCS--C--CT
T ss_pred             CCCEEEeCCCCCC-CCCC-C---CCCCCEEECCCCCC--c-cccc----chhhhhhhhhhhcccch----hhh--h--cc
Confidence            4566666666654 3442 1   34566666666632  2 2221    23466666666666543    211  1  13


Q ss_pred             CCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcEEE
Q 041867          111 HLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKTFY  190 (776)
Q Consensus       111 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  190 (776)
                      .|++|++++|.+.. +|. ++.+++|++|+++++.+. ..+.    ....+..+.+..+...   ....+..++.++.+.
T Consensus        99 ~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~---~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_          99 LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE---ELPELQNLPFLTAIY  168 (353)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS---SCCCCTTCTTCCEEE
T ss_pred             cccccccccccccc-ccc-hhhhccceeecccccccc-cccc----ccccccchhhcccccc---ccccccccccceecc
Confidence            46677777766663 342 456666777777666665 3322    2345555665555433   122355566666666


Q ss_pred             cccCccc
Q 041867          191 ADNNELN  197 (776)
Q Consensus       191 l~~n~~~  197 (776)
                      +..|...
T Consensus       169 l~~n~~~  175 (353)
T d1jl5a_         169 ADNNSLK  175 (353)
T ss_dssp             CCSSCCS
T ss_pred             ccccccc
Confidence            6665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=5.9e-18  Score=158.17  Aligned_cols=132  Identities=23%  Similarity=0.382  Sum_probs=116.7

Q ss_pred             ccceEEccCCcCCC-CChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          580 LLSGLDLSCNKLIG-PIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      .+++|+|++|+|++ ..+..|.++++|+.|+|++|.+..+.++.|..+++|++|+|++|+|+.+.|++|.++++|+.|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            68999999999986 45677899999999999999999999999999999999999999999888999999999999999


Q ss_pred             ccccCcccCCCccccccccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCC
Q 041867          659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNER  711 (776)
Q Consensus       659 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~~----------------~c~~~~~~~~~~~~~~~  711 (776)
                      ++|+|++..|.+|..+.+++.+++++|||.|+|+..                .|..|....+..+....
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~  178 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLP  178 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSC
T ss_pred             CCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecC
Confidence            999999988888999999999999999999999753                58888777666443333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2e-18  Score=161.39  Aligned_cols=158  Identities=23%  Similarity=0.275  Sum_probs=112.0

Q ss_pred             ccCCEEEcccccCCc-cchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867          478 SQLSHLILGHNNLEG-EVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK  556 (776)
Q Consensus       478 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (776)
                      +++++|+|++|+|++ ..+..|.++++|+.|++++|++....+..|..++                              
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~------------------------------   78 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------------------------------   78 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------------------------------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc------------------------------
Confidence            467777777777764 4456677778888888888887777777666544                              


Q ss_pred             cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                             +|++|+|++|+++.+.+.+|.++++|++|+|++|+|+++.+++|..+++|++|+|++
T Consensus        79 -----------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          79 -----------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence                                   677888888888877777788888888888888888888788888888888888888


Q ss_pred             CccCCcCCccccCCCCCCEEecccccCcccCCCccccccccCcccccCCCCCCCCC
Q 041867          637 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  692 (776)
Q Consensus       637 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~  692 (776)
                      |++....+.. .-...++.+.+..|.+++..|..   +..+...+++.|.+.|.++
T Consensus       136 N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         136 NPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             cccccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            8876432211 11223555667777777766653   3445566777888877654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=162.50  Aligned_cols=104  Identities=27%  Similarity=0.253  Sum_probs=54.6

Q ss_pred             eeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCC
Q 041867          314 LFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNL  393 (776)
Q Consensus       314 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l  393 (776)
                      .++.++..++ .+|..+.  +++++|++++|.++ .+|...|.++++|++|++++|.+.+.          ..+.+|.++
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~----------i~~~~f~~l   77 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSNL   77 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCE----------ECSSSEESC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccce----------eeccccccc
Confidence            3444444444 3343332  35566666666665 56655555566666666444443210          123345556


Q ss_pred             CCCCEEeccC-CccccCCCcccCCCCCCcEEEccccccC
Q 041867          394 TWLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNIS  431 (776)
Q Consensus       394 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~  431 (776)
                      +.++++.+.. |.+....+..|.++++|+.+++++|.+.
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhc
Confidence            6666665543 4455455555666666666666666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4e-17  Score=157.29  Aligned_cols=205  Identities=19%  Similarity=0.294  Sum_probs=129.7

Q ss_pred             CEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccCCccccCCCcccCC
Q 041867          337 QILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPNNHLEGPIPVEFCQ  416 (776)
Q Consensus       337 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  416 (776)
                      ..++++.+.+++.++.   ..+.+|+.|++.+|.++           . + ..+..+++|++|++++|.+.+..+  +..
T Consensus        22 ~~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~-----------~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~   83 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVT-----------T-I-EGVQYLNNLIGLELKDNQITDLAP--LKN   83 (227)
T ss_dssp             HHHHTTCSSTTSEECH---HHHHTCCEEECTTSCCC-----------C-C-TTGGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HHHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCC-----------c-c-hhHhcCCCCcEeecCCceeecccc--ccc
Confidence            3445666666543322   23456666665444433           2 2 235666666666666666654332  566


Q ss_pred             CCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCccCCEEEcccccCCccchh
Q 041867          417 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVLV  496 (776)
Q Consensus       417 l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  496 (776)
                      +++++++++++|.++..                                      ..+.++++|+.++++++...+.  .
T Consensus        84 l~~l~~l~~~~n~~~~i--------------------------------------~~l~~l~~L~~l~l~~~~~~~~--~  123 (227)
T d1h6ua2          84 LTKITELELSGNPLKNV--------------------------------------SAIAGLQSIKTLDLTSTQITDV--T  123 (227)
T ss_dssp             CCSCCEEECCSCCCSCC--------------------------------------GGGTTCTTCCEEECTTSCCCCC--G
T ss_pred             ccccccccccccccccc--------------------------------------cccccccccccccccccccccc--c
Confidence            66666666666654411                                      1255677777777777766543  2


Q ss_pred             hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccccccceeeeeecceEEEeccc
Q 041867          497 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGK  576 (776)
Q Consensus       497 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (776)
                      .+...+.++.+.++++.+....+  +..                                                    
T Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~~--~~~----------------------------------------------------  149 (227)
T d1h6ua2         124 PLAGLSNLQVLYLDLNQITNISP--LAG----------------------------------------------------  149 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG--GGG----------------------------------------------------
T ss_pred             hhccccchhhhhchhhhhchhhh--hcc----------------------------------------------------
Confidence            35566777788877776653221  111                                                    


Q ss_pred             cccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867          577 VLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  656 (776)
Q Consensus       577 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  656 (776)
                       +++|+.|++++|.+.+.  ..++++++|++|+|++|+++++.  .+.++++|++|+|++|+++...|  +..+++|+.|
T Consensus       150 -~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L  222 (227)
T d1h6ua2         150 -LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (227)
T ss_dssp             -CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             -ccccccccccccccccc--hhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEE
Confidence             33688888888887643  33778888888888888888653  37788888888888888885433  7788888888


Q ss_pred             eccc
Q 041867          657 SVAY  660 (776)
Q Consensus       657 ~l~~  660 (776)
                      ++++
T Consensus       223 ~lsn  226 (227)
T d1h6ua2         223 TLTN  226 (227)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            8863

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-19  Score=195.93  Aligned_cols=213  Identities=18%  Similarity=0.124  Sum_probs=116.6

Q ss_pred             CCCEEeccCCccccCC----CcccCCCCCCcEEEccccccCCC-----CCCCCC-CCcccEEEcCCcccCcccccccCCc
Q 041867          395 WLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGS-----LPSCFH-PLSIKQVHLSKNMLHGQLKRDLSYN  464 (776)
Q Consensus       395 ~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~ls~n~l~~~-----~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n  464 (776)
                      ....+++..+.+....    ...+...+.++.+++++|.+...     ...... ...++.+++++|.+.....      
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~------  272 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC------  272 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH------
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccc------
Confidence            4456666666554221    12234567788888888765321     111111 4466677666665432110      


Q ss_pred             cccccCChhhccCccCCEEEcccccCCccchhhh-----cCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcch
Q 041867          465 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVLVQL-----CELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDE  539 (776)
Q Consensus       465 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  539 (776)
                         .....++...+.++.+++++|.++......+     ...+.|+.+++++|.+.......+..+.             
T Consensus       273 ---~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~-------------  336 (460)
T d1z7xw1         273 ---GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-------------  336 (460)
T ss_dssp             ---HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-------------
T ss_pred             ---ccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccc-------------
Confidence               1122334556777778888777764333222     2345677788777766532211111100             


Q ss_pred             hhhcccccCCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----Chhhhc-cCccCCeeeccccc
Q 041867          540 QFEIFFSIESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIG-NLTRIQTLNLSHND  614 (776)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~N~  614 (776)
                                                          ...++|++|+|++|+++..    ++..+. ..+.|++|+|++|.
T Consensus       337 ------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         337 ------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             ------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ------------------------------------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence                                                0123677888888877532    222332 35667888888887


Q ss_pred             cccc----CccccCCCCCCCEEECcCCccCCcCCc----ccc-CCCCCCEEecccccCcc
Q 041867          615 LIGL----IPSTFSNLKHVESLDLSNNKLNGKIPH----QLV-ELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       615 l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~-~l~~L~~L~l~~N~l~~  665 (776)
                      +++.    +++.+..+++|++|||++|+|+.....    .+. ....|+.|++.+|.+..
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            7643    234455667788888888877643222    222 22367888888777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1e-19  Score=196.86  Aligned_cols=46  Identities=22%  Similarity=0.062  Sum_probs=32.6

Q ss_pred             ChhhccCccCCEEEcccccCCccchhhh----c-CCCCCCEEeCCCCcccC
Q 041867          471 PDWVDGLSQLSHLILGHNNLEGEVLVQL----C-ELNQLQLLDLSNNNLHG  516 (776)
Q Consensus       471 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~  516 (776)
                      ...+..+++|++|+|++|+++......+    . ....|+.|++.+|.+.+
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            4456677889999999998876544333    2 33478999999888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.3e-17  Score=156.68  Aligned_cols=139  Identities=19%  Similarity=0.092  Sum_probs=84.1

Q ss_pred             cCChhhccCccCCEEEcccccCCccchh-hhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhccccc
Q 041867          469 SIPDWVDGLSQLSHLILGHNNLEGEVLV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSI  547 (776)
Q Consensus       469 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (776)
                      ..+..|.++++|+.+++++|++....+. .+..++.+..+..+++.+....+..|..++                     
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~---------------------  152 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------------  152 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------------
T ss_pred             cccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------------
Confidence            4445566777777777777776644322 223344555555566666555555444322                     


Q ss_pred             CCCCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCC
Q 041867          548 ESPQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLK  627 (776)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  627 (776)
                                                     ..++.|++++|+++.+.+..|.....++.+++++|.++.+.+..|.+++
T Consensus       153 -------------------------------~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         153 -------------------------------FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             -------------------------------SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             -------------------------------ccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCC
Confidence                                           2566777777777755554444333333445677777776666777777


Q ss_pred             CCCEEECcCCccCCcCCccccCCCCCCEEecc
Q 041867          628 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  659 (776)
Q Consensus       628 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  659 (776)
                      +|++|++++|+++...+..|..+++|+.+++.
T Consensus       202 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         202 GPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            88888888877775555566666666665553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.9e-16  Score=150.24  Aligned_cols=208  Identities=23%  Similarity=0.318  Sum_probs=142.4

Q ss_pred             cccceeecccccCccCCCccCCCCCCCCEEEccCCcCCCcCchhhhhcCCCCcEEEccCccccceEecCCCcCCCCCCcc
Q 041867          310 PSLYLFNNSMNALDGSIPSSLGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRW  389 (776)
Q Consensus       310 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~  389 (776)
                      .++...++..+++.+..  .+..+.+|+.|++.+|.++ .++ . +..+++|++|++++|++.           +..  .
T Consensus        19 ~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~-----------~~~--~   80 (227)
T d1h6ua2          19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQIT-----------DLA--P   80 (227)
T ss_dssp             HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCC-----------CCG--G
T ss_pred             HHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceee-----------ccc--c
Confidence            34455677777777543  4567889999999999998 675 3 457999999997776654           322  3


Q ss_pred             ccCCCCCCEEeccCCccccCCCcccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCcccccc
Q 041867          390 LGNLTWLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGS  469 (776)
Q Consensus       390 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~  469 (776)
                      +..+++++++++++|.++..  ..+..+++|+.++++++...+..+                                  
T Consensus        81 l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~----------------------------------  124 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP----------------------------------  124 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG----------------------------------
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccccch----------------------------------
Confidence            88999999999999998743  358899999999999887653211                                  


Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                          +...+.++.+.++++.+....  .+...++|+.|++++|.+.+..+  +..                         
T Consensus       125 ----~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~-------------------------  171 (227)
T d1h6ua2         125 ----LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LAN-------------------------  171 (227)
T ss_dssp             ----GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTT-------------------------
T ss_pred             ----hccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcc-------------------------
Confidence                233445555555555554322  24555666667766666543221  222                         


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHV  629 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  629 (776)
                                                  +++|+.|++++|++++. + .++++++|++|+|++|+++++.|  ++++++|
T Consensus       172 ----------------------------l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         172 ----------------------------LSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             ----------------------------cccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCC
Confidence                                        23677777777777643 2 37777888888888888876643  7778888


Q ss_pred             CEEECcC
Q 041867          630 ESLDLSN  636 (776)
Q Consensus       630 ~~L~Ls~  636 (776)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            8888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.5e-16  Score=148.13  Aligned_cols=124  Identities=27%  Similarity=0.419  Sum_probs=83.8

Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      +..+++|+.|++++|++++..  .+..+++|+.|++++|.+....  .+..                             
T Consensus        86 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~~~~~--~l~~-----------------------------  132 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVH-----------------------------  132 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGG-----------------------------
T ss_pred             cccCccccccccccccccccc--cccccccccccccccccccccc--cccc-----------------------------
Confidence            345666777777777666432  4666777777777777654221  1222                             


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLD  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  633 (776)
                                              ++.++.+++++|.+++.  ..+..+++|+.+++++|+++++.  .+.++++|++|+
T Consensus       133 ------------------------l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~  184 (210)
T d1h6ta2         133 ------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLY  184 (210)
T ss_dssp             ------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             ------------------------ccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEE
Confidence                                    33677777777777642  34667788888888888887653  377888888888


Q ss_pred             CcCCccCCcCCccccCCCCCCEEeccc
Q 041867          634 LSNNKLNGKIPHQLVELKTLEVFSVAY  660 (776)
Q Consensus       634 Ls~N~l~~~~~~~l~~l~~L~~L~l~~  660 (776)
                      +++|+++. +| .+..+++|+.|+|++
T Consensus       185 Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            88888874 44 477888888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.9e-15  Score=141.69  Aligned_cols=147  Identities=22%  Similarity=0.330  Sum_probs=70.3

Q ss_pred             CCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCCCC
Q 041867           29 FPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGLCS  108 (776)
Q Consensus        29 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~  108 (776)
                      ++++++|++++|.+.. ++  .+..+++|++|++++|  .+.+..+  +. ++++|++|++++|.+..    ++  .+.+
T Consensus        39 l~~l~~L~l~~~~i~~-l~--~l~~l~nL~~L~Ls~N--~l~~~~~--l~-~l~~L~~L~l~~n~~~~----~~--~l~~  104 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNN--QLTDITP--LK-NLTKLVDILMNNNQIAD----IT--PLAN  104 (199)
T ss_dssp             HTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSS--CCCCCGG--GT-TCTTCCEEECCSSCCCC----CG--GGTT
T ss_pred             hcCCCEEECCCCCCCC-cc--ccccCCCcCcCccccc--cccCccc--cc-CCccccccccccccccc----cc--cccc
Confidence            3455555555555542 22  2444555555555555  2222211  33 55555555555555432    21  2445


Q ss_pred             CCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCccccccCcccccCCCCCcE
Q 041867          109 PVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNHFQIPISLEPLFNHSRLKT  188 (776)
Q Consensus       109 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  188 (776)
                      +++|++|++++|.+...  ..+..+++|+.|++++|++. .++  .+..+++|+.|++.+|.+++   ...+.++++|++
T Consensus       105 l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~---l~~l~~l~~L~~  176 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTD---LKPLANLTTLER  176 (199)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCCE
T ss_pred             ccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccC---CccccCCCCCCE
Confidence            55555555555554432  23445555555555555554 332  24555555555555555442   123455555555


Q ss_pred             EEcccCccc
Q 041867          189 FYADNNELN  197 (776)
Q Consensus       189 L~l~~n~~~  197 (776)
                      |++++|+++
T Consensus       177 L~ls~N~i~  185 (199)
T d2omxa2         177 LDISSNKVS  185 (199)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCCCC
Confidence            555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-15  Score=142.26  Aligned_cols=71  Identities=38%  Similarity=0.564  Sum_probs=36.2

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEE
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF  656 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  656 (776)
                      +|+.|++++|++.. + ..+..+++|+.|++++|+++++.  .++++++|++|++++|+++. ++ .+..+++|+.|
T Consensus       129 ~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         129 NLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            45555555555442 2 23555555555555555555442  25555556666666665553 22 34555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-15  Score=143.46  Aligned_cols=164  Identities=23%  Similarity=0.379  Sum_probs=100.0

Q ss_pred             CCCCcEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCC
Q 041867            4 FTNLEYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPS   83 (776)
Q Consensus         4 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~   83 (776)
                      +.+|++|++++|.+.+..  . +..+++|++|++++|++++. +  .+..+++|++|++++|+|  .+ ++ .+. ++++
T Consensus        45 L~~L~~L~l~~~~i~~l~--~-l~~l~~L~~L~L~~n~i~~l-~--~~~~l~~L~~L~l~~n~i--~~-l~-~l~-~l~~  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--G-IQYLPNVTKLFLNGNKLTDI-K--PLANLKNLGWLFLDENKV--KD-LS-SLK-DLKK  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCC--CC-GG-GGT-TCTT
T ss_pred             hcCccEEECcCCCCCCch--h-HhhCCCCCEEeCCCccccCc-c--ccccCccccccccccccc--cc-cc-ccc-cccc
Confidence            445667777777665432  2 55667777777777766532 2  245667777777777733  22 22 334 6667


Q ss_pred             ccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCE
Q 041867           84 LKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEK  163 (776)
Q Consensus        84 L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  163 (776)
                      |+.|++++|.+..    ++  .+..+++++++++++|.+++  +..+..+++|+++++++|+++ .++.  +.++++|++
T Consensus       114 L~~L~l~~~~~~~----~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~-~i~~--l~~l~~L~~  182 (210)
T d1h6ta2         114 LKSLSLEHNGISD----IN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQN  182 (210)
T ss_dssp             CCEEECTTSCCCC----CG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred             ccccccccccccc----cc--cccccccccccccccccccc--ccccccccccccccccccccc-cccc--ccCCCCCCE
Confidence            7777777766643    22  46666677777777776653  234556677777777777766 4432  666777777


Q ss_pred             EeccCCccccccCcccccCCCCCcEEEcc
Q 041867          164 LYLSNNHFQIPISLEPLFNHSRLKTFYAD  192 (776)
Q Consensus       164 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  192 (776)
                      |++++|.++ .+  ..+..+++|++|+++
T Consensus       183 L~Ls~N~i~-~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         183 LYLSKNHIS-DL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCC-BC--GGGTTCTTCSEEEEE
T ss_pred             EECCCCCCC-CC--hhhcCCCCCCEEEcc
Confidence            777777665 22  246666677766664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.4e-15  Score=130.76  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=98.7

Q ss_pred             ccceEEccCCcCCCCChhhhccCccCCeeecccc-cccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEec
Q 041867          580 LLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHN-DLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV  658 (776)
Q Consensus       580 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  658 (776)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|++++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567999999988 56788999999999999876 599888899999999999999999999888999999999999999


Q ss_pred             ccccCcccCCCccccccccCcccccCCCCCCCCCC
Q 041867          659 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  693 (776)
Q Consensus       659 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~~  693 (776)
                      ++|+|+...+..+ ....++.+++++|||.|+|..
T Consensus        88 s~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            9999996555555 444799999999999999965

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.9e-14  Score=143.02  Aligned_cols=224  Identities=17%  Similarity=0.144  Sum_probs=139.1

Q ss_pred             cEEECCCCCCCCccchhccCCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEE
Q 041867            8 EYLTLHGSSLHISLLQSIASIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYL   87 (776)
Q Consensus         8 ~~L~L~~n~~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L   87 (776)
                      ++|||+++.+.......++.  .....+.++...+.....  ......+|++|++++|  .+.......+...+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~--~~~~~~~L~~LdLs~~--~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNS--VIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTC--EECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh--hhccCCCCCEEECCCC--ccCHHHHHHHHHhCCCcccc
Confidence            57899998876443333222  246677777666543222  2345678999999999  55556556666689999999


Q ss_pred             EccCCCCCCCCCCcCCcCCCCCCCCCEEEccCC-ccccc-cCccccCCCCCCEEeCCCCc-Cccc-CCcccc-cCCCCCC
Q 041867           88 SLSYSTLGTNSSRILDRGLCSPVHLQELYIGSN-DLRGS-LPWCMTNLTSLRILDVSSNQ-LTGS-ISSSPL-IHLTSIE  162 (776)
Q Consensus        88 ~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-i~~~~~-~~l~~L~  162 (776)
                      ++++|.+++   ... ..++.+++|++|++++| .++.. +...+..+++|++|+++++. +++. +.. .+ ...++|+
T Consensus        77 ~L~~~~l~~---~~~-~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~  151 (284)
T d2astb2          77 SLEGLRLSD---PIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETIT  151 (284)
T ss_dssp             ECTTCBCCH---HHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCC
T ss_pred             cccccCCCc---HHH-HHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchh-hhcccccccc
Confidence            999998875   333 36788899999999986 55532 22234578999999999864 4322 112 22 2346899


Q ss_pred             EEeccCCc--cccccCcccccCCCCCcEEEcccCc-ccccccccccCCCCCcccceEeccCCCCCCcccCccccCCCCcC
Q 041867          163 KLYLSNNH--FQIPISLEPLFNHSRLKTFYADNNE-LNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFLYHQHDLE  239 (776)
Q Consensus       163 ~L~L~~n~--l~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  239 (776)
                      .|+++++.  ++...-.....++++|++|++++|. ++.                            .....+..+++|+
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd----------------------------~~~~~l~~~~~L~  203 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN----------------------------DCFQEFFQLNYLQ  203 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG----------------------------GGGGGGGGCTTCC
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCc----------------------------hhhhhhcccCcCC
Confidence            99998753  3311111123567888888887764 221                            2223344556666


Q ss_pred             EEEcCCC-CCcccCChHHhhcCCCCcEEEccCC
Q 041867          240 TVELSHI-KMNGEFPTWLLENNTKLRQLSLVND  271 (776)
Q Consensus       240 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~L~~n  271 (776)
                      .|++++| .+++.....+ +++++|+.|++.++
T Consensus       204 ~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC
Confidence            6666664 3444443333 45666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=142.72  Aligned_cols=183  Identities=17%  Similarity=0.163  Sum_probs=90.1

Q ss_pred             CCCCCEEEccCCccccc-cCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEEeccCCc-cccccCcc-cccCCCC
Q 041867          109 PVHLQELYIGSNDLRGS-LPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKLYLSNNH-FQIPISLE-PLFNHSR  185 (776)
Q Consensus       109 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~l~~l~~  185 (776)
                      ..+|++||+++|.++.. +...+..+++|++|++++|.+++.... .+.++++|++|+++++. ++. .... ....+++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~  122 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSR  122 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTT
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHH-HHhcCCCCcCccccccccccc-cccchhhHHHHh
Confidence            34566666666655432 233455666666666666665543333 45556666666666643 321 1111 1234566


Q ss_pred             CcEEEcccCc-ccccccccccCCCCCcccceEeccCCC-CCC-cccCccccCCCCcCEEEcCCCC-CcccCChHHhhcCC
Q 041867          186 LKTFYADNNE-LNAEITQSHSLTAPNFQLSRLSLSSGY-EDG-VTFPKFLYHQHDLETVELSHIK-MNGEFPTWLLENNT  261 (776)
Q Consensus       186 L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~  261 (776)
                      |++|+++++. ++....... .......|+.++++... ... ..+......+++|++|++++|. +++.....+ .+++
T Consensus       123 L~~L~ls~c~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~  200 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN  200 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT
T ss_pred             ccccccccccccccccchhh-hcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccC
Confidence            6666666543 211100000 00001134444442111 111 1122333456677777777653 454444444 5667


Q ss_pred             CCcEEEccCC-CCcCcCCCCCCCCCCcCEEEceec
Q 041867          262 KLRQLSLVND-SLGGPFRLPIHSHKRLGMLDISNN  295 (776)
Q Consensus       262 ~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~ls~n  295 (776)
                      +|++|++++| .+++.....++.+++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777777764 455544455666667777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-14  Score=128.54  Aligned_cols=128  Identities=19%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             hccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCC
Q 041867          474 VDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGN  553 (776)
Q Consensus       474 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (776)
                      |.++.++++|+|++|+|+.+ +..+..+++|+.|++++|+|... + .+..                             
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~-----------------------------   61 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPL-----------------------------   61 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCC-----------------------------
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-Cccc-----------------------------
Confidence            45666777888888887755 44556677788888888877643 1 2332                             


Q ss_pred             ccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCCCCEE
Q 041867          554 VEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKHVESL  632 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L  632 (776)
                                              +++|++|++++|+++...+..+..+++|+.|++++|+++.... ..+..+++|+.|
T Consensus        62 ------------------------l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          62 ------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             ------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             ------------------------CcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence                                    3367778888887776656666777788888888887775532 456777778888


Q ss_pred             ECcCCccCCcC---CccccCCCCCCEEe
Q 041867          633 DLSNNKLNGKI---PHQLVELKTLEVFS  657 (776)
Q Consensus       633 ~Ls~N~l~~~~---~~~l~~l~~L~~L~  657 (776)
                      ++++|+++...   +..+..+|+|+.||
T Consensus       118 ~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         118 CILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888776332   12456677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.8e-13  Score=116.28  Aligned_cols=85  Identities=32%  Similarity=0.464  Sum_probs=72.4

Q ss_pred             ccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCC-ccccCCCCCCEE
Q 041867          578 LSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIP-HQLVELKTLEVF  656 (776)
Q Consensus       578 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L  656 (776)
                      ++.|++|++++|+++ .+|..+..+++|+.|++++|.++++  +.+..+++|++|++++|+|+...+ ..+..+++|+.|
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            348999999999998 4567899999999999999999876  358899999999999999985542 568889999999


Q ss_pred             ecccccCcc
Q 041867          657 SVAYNNLSG  665 (776)
Q Consensus       657 ~l~~N~l~~  665 (776)
                      ++++|+++.
T Consensus        96 ~l~~N~i~~  104 (124)
T d1dcea3          96 NLQGNSLCQ  104 (124)
T ss_dssp             ECTTSGGGG
T ss_pred             ECCCCcCCc
Confidence            999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-13  Score=122.51  Aligned_cols=127  Identities=14%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             CCCCCCCEEeCCCCcCccccCCCcCCCCCCCcEEeCCCCccccCcchhHHHHhcCCCccEEEccCCCCCCCCCCcCCcCC
Q 041867           27 SIFPSLKNLSISYCEVNGVVHGQGFPHFKSLEHLGMMSTRIALNTNFLQVISESMPSLKYLSLSYSTLGTNSSRILDRGL  106 (776)
Q Consensus        27 ~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l  106 (776)
                      .++..+|+|+|++|+|+. ++. .+..+++|++|++++|+|.  ..  +.+. .+++|++|++++|.++.    +++..+
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~-~~~~l~~L~~L~Ls~N~i~--~l--~~~~-~l~~L~~L~ls~N~i~~----l~~~~~   83 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR--KL--DGFP-LLRRLKTLLVNNNRICR----IGEGLD   83 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC--EE--CCCC-CCSSCCEEECCSSCCCE----ECSCHH
T ss_pred             cCcCcCcEEECCCCCCCc-cCc-cccccccCCEEECCCCCCC--cc--CCcc-cCcchhhhhcccccccC----CCcccc
Confidence            344455555555555542 232 3344555555555555322  11  1223 55566666666665543    333233


Q ss_pred             CCCCCCCEEEccCCcccccc-CccccCCCCCCEEeCCCCcCcccCCc---ccccCCCCCCEEe
Q 041867          107 CSPVHLQELYIGSNDLRGSL-PWCMTNLTSLRILDVSSNQLTGSISS---SPLIHLTSIEKLY  165 (776)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~  165 (776)
                      ..+++|++|++++|+++... ...+..+++|++|++++|.++ ..+.   ..+..+++|++||
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            45556666666666655321 134556666666666666665 3332   1355566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.7e-13  Score=115.11  Aligned_cols=103  Identities=27%  Similarity=0.421  Sum_probs=69.1

Q ss_pred             cEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccccCccccCCCCCCEEeCCCCcCcccCCcccccCCCCCCEE
Q 041867           85 KYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWCMTNLTSLRILDVSSNQLTGSISSSPLIHLTSIEKL  164 (776)
Q Consensus        85 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  164 (776)
                      |+|+|++|.++.    ++  .+..+++|++|++++|+++ .+|..|..+++|++|++++|.++ .++  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~----l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV----LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS----CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCC----Cc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeE
Confidence            567777777754    32  4666777777777777776 35556777777777777777776 554  36777777777


Q ss_pred             eccCCccccccCcccccCCCCCcEEEcccCccc
Q 041867          165 YLSNNHFQIPISLEPLFNHSRLKTFYADNNELN  197 (776)
Q Consensus       165 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  197 (776)
                      ++++|.+........+..+++|+.|++++|++.
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            777777763333345667777777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=115.56  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=75.8

Q ss_pred             cccceEEccCC-cCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEe
Q 041867          579 SLLSGLDLSCN-KLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS  657 (776)
Q Consensus       579 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  657 (776)
                      ++|++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+.+|.++++|++|+|++|+|+...+..|.. .+|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccc
Confidence            37889999766 488777889999999999999999999999999999999999999999999666666655 4799999


Q ss_pred             cccccCcc
Q 041867          658 VAYNNLSG  665 (776)
Q Consensus       658 l~~N~l~~  665 (776)
                      |++|++.+
T Consensus       110 L~~Np~~C  117 (156)
T d2ifga3         110 LSGNPLHC  117 (156)
T ss_dssp             CCSSCCCC
T ss_pred             cCCCcccC
Confidence            99999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=9.7e-14  Score=142.60  Aligned_cols=246  Identities=18%  Similarity=0.158  Sum_probs=146.7

Q ss_pred             cCCCCCCCEEeCCCCcCccc----cCCCcCCCCCCCcEEeCCCCccccCc--------chhHHHHhcCCCccEEEccCCC
Q 041867           26 ASIFPSLKNLSISYCEVNGV----VHGQGFPHFKSLEHLGMMSTRIALNT--------NFLQVISESMPSLKYLSLSYST   93 (776)
Q Consensus        26 ~~~~~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~--------~~~~~~~~~l~~L~~L~L~~n~   93 (776)
                      +.....|+.|+|++|.+...    +. ..+...++|+.++++++.+....        .+...+. .+++|++|+|++|.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL-KCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT-TCTTCCEEECCSCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHH-HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHh-hCCCcccccccccc
Confidence            44567788888888776421    11 14566778888887766322111        1223333 56788888888887


Q ss_pred             CCCCCCCcCCcCCCCCCCCCEEEccCCccccccCcc-------------ccCCCCCCEEeCCCCcCccc----CCccccc
Q 041867           94 LGTNSSRILDRGLCSPVHLQELYIGSNDLRGSLPWC-------------MTNLTSLRILDVSSNQLTGS----ISSSPLI  156 (776)
Q Consensus        94 i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~----i~~~~~~  156 (776)
                      ++..+.......+..+++|++|++++|.+.......             ....+.|+.+++++|.+...    +.. .+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~-~l~  183 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-TFQ  183 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-HHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc-hhh
Confidence            766333323334456678888888888765321111             13467788888888876522    111 345


Q ss_pred             CCCCCCEEeccCCccccc----cCcccccCCCCCcEEEcccCcccccccccccCCCCCcccceEeccCCCCCCcccCccc
Q 041867          157 HLTSIEKLYLSNNHFQIP----ISLEPLFNHSRLKTFYADNNELNAEITQSHSLTAPNFQLSRLSLSSGYEDGVTFPKFL  232 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l  232 (776)
                      ..+.|++|++++|.+...    .....+..+++|+.|++++|.+......                        .+...+
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~------------------------~L~~~l  239 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS------------------------ALAIAL  239 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH------------------------HHHHHG
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc------------------------cccccc
Confidence            667888888888877521    1123356678888888888876432111                        123345


Q ss_pred             cCCCCcCEEEcCCCCCcccCChHHh---h--cCCCCcEEEccCCCCcCcCCC----CC-CCCCCcCEEEceeccCc
Q 041867          233 YHQHDLETVELSHIKMNGEFPTWLL---E--NNTKLRQLSLVNDSLGGPFRL----PI-HSHKRLGMLDISNNNFR  298 (776)
Q Consensus       233 ~~~~~L~~L~l~~~~~~~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~----~~-~~~~~L~~L~ls~n~l~  298 (776)
                      ..+++|++|++++|.+.+.....+.   .  ..+.|++|++++|.++.....    .+ .++++|+.|++++|++.
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            5667777888888777654333332   1  235678888888877653221    12 24567888888888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=4.7e-14  Score=144.99  Aligned_cols=262  Identities=15%  Similarity=0.106  Sum_probs=150.9

Q ss_pred             CccCCCCCCCCEEEccCCcCCCcCchhhh---hcCCCCcEEEccCccccceEecCCCcCCCCCCccccCCCCCCEEeccC
Q 041867          327 PSSLGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQSLALSNNNLQEGLYLNNNSLSGKIPRWLGNLTWLQYIIMPN  403 (776)
Q Consensus       327 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~  403 (776)
                      ...+.....++.|++++|.+.......+.   ...++|+.++++++.....-.... .....+...+..+++|+.|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP-EALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH-HHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccc-hHHHHHHHHHhhCCCcccccccc
Confidence            34556678888999998887643333332   235678888876654320000000 00001123344566677777777


Q ss_pred             CccccCCCc----ccCCCCCCcEEEccccccCCCCCCCCCCCcccEEEcCCcccCcccccccCCccccccCChhhccCcc
Q 041867          404 NHLEGPIPV----EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRDLSYNRLNGSIPDWVDGLSQ  479 (776)
Q Consensus       404 n~i~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~l~~~~~~~~~~l~~  479 (776)
                      |.+......    .+...++|+.|++++|.+.......+ ...+..+                      .........+.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~----------------------~~~~~~~~~~~  159 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-ARALQEL----------------------AVNKKAKNAPP  159 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-HHHHHHH----------------------HHHHHHHTCCC
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccc-ccccccc----------------------ccccccccCcc
Confidence            766543222    23345666666666665431100000 0000000                      00111245677


Q ss_pred             CCEEEcccccCCccc----hhhhcCCCCCCEEeCCCCcccCCC-----CCCCcCCcccccccCCCCcchhhhcccccCCC
Q 041867          480 LSHLILGHNNLEGEV----LVQLCELNQLQLLDLSNNNLHGPI-----PPCFDNTTLYESYSNSSSLDEQFEIFFSIESP  550 (776)
Q Consensus       480 L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (776)
                      |+.+.+++|.++...    ...+...+.|+.|++++|++....     ...+.                           
T Consensus       160 L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~---------------------------  212 (344)
T d2ca6a1         160 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---------------------------  212 (344)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------------------------
T ss_pred             cceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhc---------------------------
Confidence            888888888877433    334556788999999888875310     11111                           


Q ss_pred             CCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCC----ChhhhccCccCCeeecccccccccCccc----
Q 041867          551 QGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGP----IPPQIGNLTRIQTLNLSHNDLIGLIPST----  622 (776)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----  622 (776)
                                                ..+.|+.|+|++|.++..    +...+..+++|++|+|++|.|++.....    
T Consensus       213 --------------------------~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         213 --------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             --------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             --------------------------chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence                                      134788899999987532    3456778899999999999987653322    


Q ss_pred             cC--CCCCCCEEECcCCccCCc----CCcccc-CCCCCCEEecccccCcc
Q 041867          623 FS--NLKHVESLDLSNNKLNGK----IPHQLV-ELKTLEVFSVAYNNLSG  665 (776)
Q Consensus       623 ~~--~l~~L~~L~Ls~N~l~~~----~~~~l~-~l~~L~~L~l~~N~l~~  665 (776)
                      +.  ..+.|++|++++|+|+..    +...+. +.++|+.|++++|++..
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            32  246799999999998742    233332 46789999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.3e-13  Score=128.11  Aligned_cols=135  Identities=21%  Similarity=0.259  Sum_probs=95.1

Q ss_pred             CChhhccCccCCEEEcccccCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCC
Q 041867          470 IPDWVDGLSQLSHLILGHNNLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIES  549 (776)
Q Consensus       470 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (776)
                      .+..+..+++|+.|+|++|+|+..  ..+..+++|++|++++|++... |..+..                         
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~i-~~~~~~-------------------------   91 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI-ENLDAV-------------------------   91 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECSC-SSHHHH-------------------------
T ss_pred             hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccccc-cccccc-------------------------
Confidence            445678888888888888888854  2477888888888888887643 221111                         


Q ss_pred             CCCCccccccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCc-cccCCCCC
Q 041867          550 PQGNVEKQIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIP-STFSNLKH  628 (776)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~  628 (776)
                                                  ++.|++|++++|+++..  ..+..+++|+.|++++|+++.... ..+..+++
T Consensus        92 ----------------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          92 ----------------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ----------------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ----------------------------ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCc
Confidence                                        23688888888888743  357788888888888888876533 46788888


Q ss_pred             CCEEECcCCccCCcCCcc----------ccCCCCCCEEecccccCc
Q 041867          629 VESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS  664 (776)
Q Consensus       629 L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~l~~N~l~  664 (776)
                      |+.|++++|++....+..          +..+|+|+.||  +.+++
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             cceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            888888888876443322          45577777776  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=3.6e-13  Score=125.10  Aligned_cols=132  Identities=25%  Similarity=0.249  Sum_probs=103.7

Q ss_pred             cCCEEEcccc--cCCccchhhhcCCCCCCEEeCCCCcccCCCCCCCcCCcccccccCCCCcchhhhcccccCCCCCCccc
Q 041867          479 QLSHLILGHN--NLEGEVLVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLYESYSNSSSLDEQFEIFFSIESPQGNVEK  556 (776)
Q Consensus       479 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (776)
                      ..+.+++.+.  .+. ..+..+..+++|++|+|++|+|..+ + .+..                                
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~--------------------------------   68 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSG--------------------------------   68 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHH--------------------------------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccC--------------------------------
Confidence            3455556544  233 3456788999999999999999854 2 2433                                


Q ss_pred             cccceeeeeecceEEEeccccccccceEEccCCcCCCCChhhhccCccCCeeecccccccccCccccCCCCCCCEEECcC
Q 041867          557 QIHEIFEFTTKNIVYIYQGKVLSLLSGLDLSCNKLIGPIPPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSN  636 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  636 (776)
                                           +++|+.|+|++|.++ .+|..+..+++|+.|++++|+++.+  ..+..+++|+.|++++
T Consensus        69 ---------------------l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          69 ---------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             ---------------------HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESE
T ss_pred             ---------------------CccccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccccccc
Confidence                                 448999999999998 4566666778999999999999975  4578899999999999


Q ss_pred             CccCCcCC-ccccCCCCCCEEecccccCcccCCC
Q 041867          637 NKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIPE  669 (776)
Q Consensus       637 N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~p~  669 (776)
                      |+++.... ..+..+++|+.|++++|++....+.
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             chhccccccccccCCCccceeecCCCccccCccc
Confidence            99985432 5688999999999999999865554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.4e-08  Score=88.60  Aligned_cols=80  Identities=23%  Similarity=0.171  Sum_probs=46.3

Q ss_pred             ccccceEEccCCcCCCCC--hhhhccCccCCeeecccccccccCccccCCCCCCCEEECcCCccCCcCCc-------ccc
Q 041867          578 LSLLSGLDLSCNKLIGPI--PPQIGNLTRIQTLNLSHNDLIGLIPSTFSNLKHVESLDLSNNKLNGKIPH-------QLV  648 (776)
Q Consensus       578 ~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~  648 (776)
                      ++.|++|+|++|+|+...  +..+..+++|+.|+|++|.|+.+.+-.+.....|+.|++++|++.....+       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            346666777777666432  34456666677777777766655443333344566666666666644332       244


Q ss_pred             CCCCCCEEe
Q 041867          649 ELKTLEVFS  657 (776)
Q Consensus       649 ~l~~L~~L~  657 (776)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            556666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.2e-07  Score=82.13  Aligned_cols=88  Identities=23%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CChhhhccCccCCeeecccccccccC--ccccCCCCCCCEEECcCCccCCcCCccccCCCCCCEEecccccCcccCCCc-
Q 041867          594 PIPPQIGNLTRIQTLNLSHNDLIGLI--PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW-  670 (776)
Q Consensus       594 ~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~-  670 (776)
                      .++..+..+++|++|+|++|+|+.+.  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++++..... 
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            34556678999999999999999874  355778999999999999999655434445567999999999998655432 


Q ss_pred             ------cccccccCccc
Q 041867          671 ------TAQFATFNESS  681 (776)
Q Consensus       671 ------~~~~~~l~~~~  681 (776)
                            +..+++++.++
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                  23355555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.98  E-value=2e-06  Score=76.12  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             CCCCCCCEEeCCCC-cCccccC---CCcCCCCCCCcEEeCCCCccccC--cchhHHHHhcCCCccEEEccCCCCCCCCCC
Q 041867           27 SIFPSLKNLSISYC-EVNGVVH---GQGFPHFKSLEHLGMMSTRIALN--TNFLQVISESMPSLKYLSLSYSTLGTNSSR  100 (776)
Q Consensus        27 ~~~~~L~~L~Ls~n-~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  100 (776)
                      .+.++|+.|+|+++ .+....-   ..++...+.|++|++++|.+...  ..+...+. ..+.|++|++++|.+++.+..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~-~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh-hcccccceeeehhhcchHHHH
Confidence            44567777777753 3432100   11345556677777777633211  12223334 567778888887777665444


Q ss_pred             cCCcCCCCCCCCCEEEccCCccccc-------cCccccCCCCCCEEeCCCCc
Q 041867          101 ILDRGLCSPVHLQELYIGSNDLRGS-------LPWCMTNLTSLRILDVSSNQ  145 (776)
Q Consensus       101 ~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~  145 (776)
                      ....++...++|++|++++|++...       +...+...+.|+.|+++.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            4445666777777777777755422       23344455666667666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=3.5e-06  Score=74.53  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccccc----cCccccCCCCCCEEeCCCCc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLRGS----LPWCMTNLTSLRILDVSSNQ  145 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~  145 (776)
                      ..+.|++|++++|.+.+.+.......+...+.|++|+|++|.++..    +..++...+.|++|++++|.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3445555555555554322222222333444555555555555432    12233444455555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=2.6e-05  Score=68.82  Aligned_cols=115  Identities=16%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             CCCCCCCEEeCCC-CcCccccC---CCcCCCCCCCcEEeCCCCccccCcchh----HHHHhcCCCccEEEccCCCCCCCC
Q 041867           27 SIFPSLKNLSISY-CEVNGVVH---GQGFPHFKSLEHLGMMSTRIALNTNFL----QVISESMPSLKYLSLSYSTLGTNS   98 (776)
Q Consensus        27 ~~~~~L~~L~Ls~-n~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~~   98 (776)
                      .+.+.|++|+|++ +.++....   ..++...++|++|++++|  .+.....    ..+. ..+.++.+++++|.+.+.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n--~l~~~~~~~L~~~l~-~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC--cccHHHHHHHHHHHh-hcccchhhhhccccccchh
Confidence            4456666666665 33421110   013445556666666666  3322222    2222 4456666666666555433


Q ss_pred             CCcCCcCCCCCCCCCEEEcc--CCcccc----ccCccccCCCCCCEEeCCCC
Q 041867           99 SRILDRGLCSPVHLQELYIG--SNDLRG----SLPWCMTNLTSLRILDVSSN  144 (776)
Q Consensus        99 ~~~~~~~l~~l~~L~~L~Ls--~n~l~~----~~~~~~~~l~~L~~L~L~~n  144 (776)
                      .......+...++|+.++|+  +|.+..    .+...+...++|++|+++.+
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            32222344455555544332  334432    12233444555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.25  E-value=2.8e-05  Score=68.58  Aligned_cols=44  Identities=18%  Similarity=0.073  Sum_probs=18.9

Q ss_pred             cCCCccEEEccCCCCCCCCCCcCCcCCCCCCCCCEEEccCCccc
Q 041867           80 SMPSLKYLSLSYSTLGTNSSRILDRGLCSPVHLQELYIGSNDLR  123 (776)
Q Consensus        80 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  123 (776)
                      ..++|++|++++|.++..+.......+...++++.+++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34455555555555443222222223333444555555554443