Citrus Sinensis ID: 041911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620----
Protein Sequence
METWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGMNP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
METWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIgecncelhlkENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHamsgfypphsregdleFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAyrlapafdgEELESLLCIVAQhrqapkfcqtlgfgdkvpglqcsitaegrssssmlvgtsaptnqpvpgpmnlpqytgmnP
Flexible Loop (DISEMBL)
metwtvniseelrvaesKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDltkkslekqsnyvdvKIRLLDQrakeieskeiklvfvEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIElrekkvgevqRSIEEREkqlaykqrniSSIQTLIEDYEEVLRDKeksygevkkslvlCETKLEREKkeleltqssikelsvkfhseEEKLELLHRKVRLHENEVESleqkldsmrkqqkkyfddvelkkRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKnqlnlvqhesnlvqtRTIGYLKEFKEKEKHfdslkkgledrsqdlevkerefeervkefelrekEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSmlvgtsaptnqpvpgpmnlpqytgmnP
Low Complexity Region (SEG)
METWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNgeleckekelglVQKxIGECNCELHLKenelnslseslnIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCetklerekkeleltQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDlevkerefeervkefelrekefDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGMNP
Disordered region (IsUnstruct)
********************************ANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENEL*************LSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKK****************YKQRNISSIQTLIEDYEEVLRD****YGEVKKSLVLCE***************************************************************************IRKYI***************FV***IEDCSKEFQWK******IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEF***************************************************HSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSI************************************
Disordered Region (DISOPRED)
*E*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IL**********************VAGEWK**M******SLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYT****
Disordered Region (DISEMBL)
METWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGMNP
Disordered Region (DISPRO)
*ETWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGMN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METWTVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKxxxxxxxxxxxxxxxxxxxxxLGLVQKXIGECNCExxxxxxxxxxxxxxxxxxxxxLSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEDCSKEFQWKKKExxxxxxxxxxxxxxxxxxxxxxxxxxxxSNLVQTRTIGYLKEFKEKEKHFDSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGMNP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
224130844	1006	predicted protein [Populus trichocarpa]	0.799	0.496	0.337	2e-62
449466953	1145	PREDICTED: uncharacterized protein LOC10	0.921	0.502	0.260	4e-47
449524874	888	PREDICTED: uncharacterized LOC101218416,	0.919	0.646	0.261	5e-47
224130848	954	predicted protein [Populus trichocarpa]	0.895	0.585	0.281	2e-41
255542460	716	Protein FRIGIDA, putative [Ricinus commu	0.522	0.455	0.319	8e-39
224130856	1033	predicted protein [Populus trichocarpa]	0.706	0.426	0.294	6e-37
147767145	1701	hypothetical protein VITISV_031269 [Viti	0.391	0.143	0.348	8e-34
224130872	168	predicted protein [Populus trichocarpa]	0.206	0.767	0.542	1e-31
356541044	885	PREDICTED: uncharacterized protein LOC10	0.766	0.540	0.271	8e-31
297813019	1191	predicted protein [Arabidopsis lyrata su	0.721	0.377	0.264	1e-28

>gi|224130844|ref|XP_002328390.1| predicted protein [Populus trichocarpa] gi|222838105|gb|EEE76470.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 317/589 (53%), Gaps = 90/589 (15%)

Query: 71  LDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSL 130
           +++R KE+E  E ++  V K I +C+ +LE K+KEL  V+  I +CN EL  KE +L  L
Sbjct: 182 VEERLKELEFNEKEVERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKML 241

Query: 131 ----SESLNIKKEELSSVEEWI---NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQ 183
               S      K+EL  +++ I    +    +KEL   K LI+EC  E++  E+++  ++
Sbjct: 242 QVRSSAKFVSNKDELDGIKKSIECSKELDLKKKELDKTKELIQECVKELDSEERELSLIK 301

Query: 184 RSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE 243
           +SIEE  K    +Q ++ SI  LI++Y E L  KEK +  VKKS+ +   +L+ ++ EL 
Sbjct: 302 KSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSISVRSAELKSKETELR 361

Query: 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
             + SIKELS K   +EEKL+   + V+    ++ES E++L+ ++ +   Y  ++E ++R
Sbjct: 362 SIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIESKEEELNKIKGRMNTYVKELESRER 421

Query: 304 ELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEV-- 361
           E N I+  IE  S++L  K++QLK VQ SI +C KE +  K++ +SI+K I ECS+E+  
Sbjct: 422 EFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKNSIQKLILECSEELQS 481

Query: 362 -------------------ELKKNQLNLVQ---HESNLVQTRTIGYLKEFKEKEKHFDSL 399
                              ELKK QL+ +Q   HESN          K+ +EKEK+ +SL
Sbjct: 482 KEKNLILARESLRECCDDLELKKVQLDSIQRSSHESN----------KKSEEKEKYLNSL 531

Query: 400 KKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK-----------NLL-- 446
           +K L++R ++L VKE +FEERV E EL+E++   ++++VE + K           N+L  
Sbjct: 532 EKTLDERLKNLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGSNILSS 591

Query: 447 --------------------LQFFDTVKRARDPALLV-------LHAMSGFYPP------ 473
                                QF  T      P + V       +H      P       
Sbjct: 592 HVRVDQTENVRNPKHASSSAFQFNATTSERSSPVVNVCVSEHDLMHHGVSAEPAKVVLDI 651

Query: 474 --HSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENS 531
             + ++G   FD S+  R  ++LLEQL  V+P+I+ QV++ A K+A  W+K +R+  E+S
Sbjct: 652 VQNWKKGVTGFDASV-NRDNVVLLEQLMKVSPKISPQVKEAATKLAVLWEKNIRLETEDS 710

Query: 532 LEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDK 580
           +EVL FL  LA Y L   F  + +  L+ ++AQ +QAP+  + LGF DK
Sbjct: 711 MEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKALGFADK 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466953|ref|XP_004151190.1| PREDICTED: uncharacterized protein LOC101218416 [Cucumis sativus]

 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 186/713 (26%), Positives = 335/713 (46%), Gaps = 138/713 (19%)

Query: 6   VNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVD 65
           + ++  ++++E K+  L ++ +  HS+A+S LLF++QWKDLE HF+ T++ +  Q   V+
Sbjct: 5   LGVASNMKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVE 64

Query: 66  VKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKEN 125
                  +R K I  KE KLV +EK I +C+ E+E ++ EL  + + I +C+  +  KE 
Sbjct: 65  -------RREKAIALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEM 117

Query: 126 ELNSLSESLNIKKEELSSVEEWINKCQAYQK-------------ELQLLKNLIKECCDEI 172
           EL  + E L +  +++   E+ +  C+A ++             + ++++  I +C   +
Sbjct: 118 ELELMHERLGVLSKDIKMKEDEL--CRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAM 175

Query: 173 ELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEE--------------VLRD-- 216
           EL+E+K+  V + IEER  +   K++++ SI+ L+ ++EE               ++D  
Sbjct: 176 ELKEQKLNGVMQLIEERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSN 235

Query: 217 ---------------------KEKSYGEVKKSL----------------------VLCET 233
                                KEK   +++K++                       L E 
Sbjct: 236 GELKLKEKELETIQNMIATKWKEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGALSED 295

Query: 234 KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKK 293
            L +E  ELE  +S IKE S +   +E++L+   + +R  +N V  L   + ++ K   +
Sbjct: 296 LLSKES-ELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAIIE 354

Query: 294 YFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKT 353
              + EL++   + +++ ++  S D +S  +Q   +  +++ C +  + +K+  +++ K 
Sbjct: 355 CSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALRKF 414

Query: 354 IAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVK 413
           I E SK +E  +N       E N    +   YLKE +  +   DS    LE   ++L +K
Sbjct: 415 IEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELRLK 474

Query: 414 EREFEERVKEFELREKEFDSIRKAVE---------DHSKNLLLQ---------------- 448
           E + +   +E E +EKE + +R  ++         D   NL LQ                
Sbjct: 475 EIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSSNT 534

Query: 449 -------------------------------FFDTVKRARDPALLVLHAMSGFYPPHSRE 477
                                             T+K + DPA LVL AM  FYP H+  
Sbjct: 535 LHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHTES 594

Query: 478 GDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGF 537
            D + D   ++R CI L E L   +P+I   +++EA+++AG WK K+ + VEN  EV+ F
Sbjct: 595 KDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVVAF 654

Query: 538 LHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITA 590
           L L+A +RLA  F+  EL+ LL  V+Q++QA +  + LG GDK   +  + T 
Sbjct: 655 LLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNATPTP 707

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524874|ref|XP_004169446.1| PREDICTED: uncharacterized LOC101218416, partial [Cucumis sativus]

 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 186/712 (26%), Positives = 335/712 (47%), Gaps = 138/712 (19%)

Query: 6   VNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVD 65
           + ++  ++++E K+  L ++ +  HS+A+S LLF++QWKDLE HF+ T++ +  Q   V+
Sbjct: 5   LGVASNMKLSEWKQSNLCKAHEQLHSEASSFLLFSLQWKDLETHFESTREMILTQCEEVE 64

Query: 66  VKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKEN 125
                  +R K I  KE KLV +EK I +C+ E+E ++ EL  + + I +C+  +  KE 
Sbjct: 65  -------RREKAIALKEEKLVDLEKCILECSKEVELRKNELSELNRLIVKCDSAVKGKEM 117

Query: 126 ELNSLSESLNIKKEELSSVEEWINKCQAYQK-------------ELQLLKNLIKECCDEI 172
           EL  + E L +  +++   E+ +  C+A ++             + ++++  I +C   +
Sbjct: 118 ELELMHERLGVLSKDIKMKEDEL--CRACRRLSDLEKEFEEKEKDFEMVRERIDDCEHAM 175

Query: 173 ELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEE--------------VLRD-- 216
           EL+E+K+  V + IEER  +   K++++ SI+ L+ ++EE               ++D  
Sbjct: 176 ELKEQKLNGVMQLIEERLMECELKEKSVESIRALLRNHEEELAIKEKQFDAIQMAIKDSN 235

Query: 217 ---------------------KEKSYGEVKKSL----------------------VLCET 233
                                KEK   +++K++                       L E 
Sbjct: 236 GELKLKEKELETIQNMIATKWKEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGALSED 295

Query: 234 KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKK 293
            L +E  ELE  +S IKE S +   +E++L+   + +R  +N V  L   + ++ K   +
Sbjct: 296 LLSKES-ELESIKSCIKEHSKELDVQEKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAIIE 354

Query: 294 YFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKT 353
              + EL++   + +++ ++  S D +S  +Q   +  +++ C +  + +K+  +++ K 
Sbjct: 355 CSKEWELEENHHHSLKETVDGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALRKF 414

Query: 354 IAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVK 413
           I E SK +E  +N       E N    +   YLKE +  +   DS    LE   ++L +K
Sbjct: 415 IEERSKYLENVENNFKRRMEELNKKDEKVSLYLKEIESLKADMDSQILLLEKDREELRLK 474

Query: 414 EREFEERVKEFELREKEFDSIRKAVE---------DHSKNLLLQ---------------- 448
           E + +   +E E +EKE + +R  ++         D   NL LQ                
Sbjct: 475 EIQHKAPDEELESKEKEINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSSNT 534

Query: 449 -------------------------------FFDTVKRARDPALLVLHAMSGFYPPHSRE 477
                                             T+K + DPA LVL AM  FYP H+  
Sbjct: 535 LHFPTGSALDGKLLLALLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHTES 594

Query: 478 GDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGF 537
            D + D   ++R CI L E L   +P+I   +++EA+++AG WK K+ + VEN  EV+ F
Sbjct: 595 KDAKIDFYNVKRGCIFLSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVVAF 654

Query: 538 LHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSIT 589
           L L+A +RLA  F+  EL+ LL  V+Q++QA +  + LG GDK   +  + T
Sbjct: 655 LLLVANFRLASNFNAGELQILLNSVSQYKQAFELSRALGIGDKSSEVNATPT 706

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130848|ref|XP_002328391.1| predicted protein [Populus trichocarpa] gi|222838106|gb|EEE76471.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 197/699 (28%), Positives = 334/699 (47%), Gaps = 140/699 (20%)

Query: 8   ISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVK 67
           +S EL+ +E K+E +R++ +    +A+SVLL  +QWK+LE+HFD  +  ++ +   V+ K
Sbjct: 5   VSNELKNSELKQEIVRKTMNELQEKASSVLLLCLQWKELEDHFDSIRGLIQAEKEEVERK 64

Query: 68  IRLLDQ-------RAKEIESKEIKLVFVEKKIEDCNGELECKEKELG------------- 107
            R++ +       + K +E    ++   ++  +D   ELE KE   G             
Sbjct: 65  ERVVREREREVGVKEKRVEELVNEVTLKDQDFKDWRRELELKEINFGQKVRERYDEIELK 124

Query: 108 -------LVQKXIGECNCELHLKENELNS-----LSESLNIKKEELSSVEEWINKCQAYQ 155
                    +  + E   E   KE E N      L + + +K +E     EW    +  +
Sbjct: 125 EKKVEEEFREVALREERAEKRFKEAEENERRVGELFKEVRVKDDEF---REWRKGVELKE 181

Query: 156 KELQLLKNLIKECCDEIELREKKV-------GEVQRSIEEREKQLAYKQRNISSIQTLIE 208
           KEL+L    ++E   EI L+++KV       G   R +EER K++  K R +        
Sbjct: 182 KELELKGREVEERIKEIRLKDRKVEESLNELGFKDRKVEERIKEIGLKDRKV-------- 233

Query: 209 DYEEVLRD---KEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLEL 265
             EE L++   K++  GE                         +KE+ +K    EE+L  
Sbjct: 234 --EERLKEIGFKDRKLGE------------------------RLKEVGLKDRMVEERL-- 265

Query: 266 LHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQ 325
             ++V L + +VE   +++ S  ++  +   +V  K R        +EE  +++  KD++
Sbjct: 266 --KEVGLKDRKVEERLKEIGSKDRKVGERLKEVGWKDR-------MVEERLKEVGLKDRK 316

Query: 326 LKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQL-----NLVQHESNLVQT 380
           ++   + +    +E + + KE++ +EK + + S+EVEL + +L      L      + + 
Sbjct: 317 VEERLKEVGLKGREVEERVKEIALMEKNVGKRSEEVELNRRKLEEGFRKLELKSREVEEI 376

Query: 381 RTIGYLKE--FKEKEKHFDSLKKGLED----------RSQDLEVKEREFEERVKEFELRE 428
                LKE   +E+ + FD   K +E+          + +++E++ ++  ER+KEFEL+E
Sbjct: 377 IEGVELKEKILEERCRRFDFKGKQIEEVQLKEKELEEKLREVEMENKKCLERIKEFELKE 436

Query: 429 KEFDS-----IRKAVEDHSKNLLLQFFDTV----------KRAR---------------- 457
           K+        ++    D+S +  L F   +          KR +                
Sbjct: 437 KQVADACNARVKSETVDYSMDANLHFSVKMDGKALQILLNKRCKHDEKMKNEVSIALGLS 496

Query: 458 -DPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKV 516
            DPA LVL AM GF+PPH REGD+EF   +++RSC LLLEQL+ ++P I   VR EA K+
Sbjct: 497 SDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPTIKPHVRKEATKL 556

Query: 517 AGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLG 576
           A  W   M V  +++L+VLGF +LLAAY LA AFD +EL S L I+A+++Q P+F + L 
Sbjct: 557 AFLWMIMMTVDGQHNLDVLGFFNLLAAYGLASAFDSDELISRLVIIARNKQTPEFLRVLE 616

Query: 577 FGDKVPG-LQCSITAEGRSSSSMLVGTSAPTNQPVPGPM 614
            GDK+PG +Q  I  +    +   +      NQ  PGP+
Sbjct: 617 LGDKIPGFIQILILKKQPMEAIRFIFAFEMVNQFPPGPI 655

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542460|ref|XP_002512293.1| Protein FRIGIDA, putative [Ricinus communis] gi|223548254|gb|EEF49745.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 208/401 (51%), Gaps = 75/401 (18%)

Query: 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESL----EQKLDSMRKQQKKYFDDVELKK 302
           SSI  L++++   E++ +  H  + +   E+ S+    EQKLD ++K++K    D+EL  
Sbjct: 33  SSILSLTLQWKHIEDQFDSTHNSIDVRVEELHSIHKAIEQKLDEVKKREK----DLEL-- 86

Query: 303 RELNEIRKYIEELSQDLASKDKQLKFVQQS-IEDCSKEFQW---KKKELSSIEKTIAECS 358
                +++ ++    ++  ++K+   +Q+  + D  +E +W     KEL S+   I +  
Sbjct: 87  -----VQEAVKLRFSEVEEREKEFALIQKKELHDRKREIEWIEKSGKELDSVRVEIEDKL 141

Query: 359 KEVELKKNQLNLVQH--ESNLVQTR-TIGYLKEFKEKEKHFDSLKKG------------- 402
           + V+   N+L L  H  E    Q R ++  LK  KEKE  F                   
Sbjct: 142 RAVDEVDNRLTLFNHCIEEKADQVRLSVSKLK-LKEKELAFKDENLKEKEKKLEEHCKVL 200

Query: 403 ------LEDRSQDLEVKEREFEERVKEFE-LREKEFDSIR-------------------- 435
                 +  + +++E+KE++ E+R +EFE L+EK+  S                      
Sbjct: 201 RLKDEEIHKKFKEVELKEKQLEQRYREFEELKEKQKPSNNNTCVKIEPQITTPSDASLYF 260

Query: 436 ------KAVE------DHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFD 483
                 KA++      ++S ++  + F  +  + DPA  VL AM GFYPPH R+GD+EF 
Sbjct: 261 TVNMDGKALQIFLNEREYSDSIRDEVFIALGFSSDPAKFVLDAMQGFYPPHLRKGDMEFK 320

Query: 484 VSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAA 543
             ++RRSCILLLEQL  ++PEI+  VR+EA+K++  W  KM++  E+ LEVLGFL LLA+
Sbjct: 321 AEVVRRSCILLLEQLMKISPEISPLVRNEAIKLSFSWMTKMKIDAEHPLEVLGFLQLLAS 380

Query: 544 YRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGL 584
           Y LA  FD +EL + L +V QH  +P     LGF DK+ G+
Sbjct: 381 YGLASTFDADELLTQLEVVVQHSLSPGLFHALGFADKISGI 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa] gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 161/547 (29%), Positives = 266/547 (48%), Gaps = 106/547 (19%)

Query: 157 ELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRD 216
           EL+L +  + E   E+EL  KK+ +    +E +EKQL  +Q+ +      I+ + E L  
Sbjct: 196 ELELKEKQLLEQQKEVELENKKIKKFFEELELKEKQLLEQQKEVELENKKIKKFFEELES 255

Query: 217 KEKSYGEVKKSLVLCETKLEREKKELELTQ----SSIKELSVKFHSEEEKLELLHRKVRL 272
           KEK    V++  +L E   +  ++ELEL +      ++E   +   +E+K+E   R+V L
Sbjct: 256 KEKL---VEERRLLKEENSKEWRRELELKEINFGQQVRERYDEIELKEKKVEEEFREVAL 312

Query: 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQS 332
            E  VE   ++++   ++ ++ F +V +K  E  E RK +E   +++  + K++ F  + 
Sbjct: 313 REERVEKRFREVEEKERRVRELFKEVRVKDDEFRERRKGVELKGREVEERIKEIGFKDRK 372

Query: 333 IEDCSKEFQWKK---------------------KELSSIEKTIAECSKEVELKKNQLNLV 371
           + +  KE   K                      KE++ +EK + + S+EVEL + +L   
Sbjct: 373 VGERLKEVGLKDRKAEERLKEVGLKGREVEERVKEIALMEKNVGKRSEEVELNRRKLEE- 431

Query: 372 QHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLED-------RSQDLEVKEREFEE----- 419
                       G+ +E + K +  + + KG+E        R +  ++K ++ EE     
Sbjct: 432 ------------GF-RELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKE 478

Query: 420 -------------------RVKEFELREKEFDS-----IRKAVEDHSKNLLLQFFDTV-- 453
                              R+KEFEL+EK+        ++    D+S +  L F   +  
Sbjct: 479 KELEERLREVEMENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKMDG 538

Query: 454 --------KRAR-----------------DPALLVLHAMSGFYPPHSREGDLEFDVSIIR 488
                   KR +                 DPA LVL AM GFYPPH REGD+EF   +++
Sbjct: 539 KALQILLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVK 598

Query: 489 RSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAP 548
           RSC LLLEQL+ ++P I   VR EA K+A  W  KM V  +++L+V+GF +LLAAY LA 
Sbjct: 599 RSCNLLLEQLTKISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLAS 658

Query: 549 AFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPG-LQCSITAEGRSSSSMLVGTSAPTN 607
           AFD +EL S L I+A++RQ P+F + L  GDK+PG ++  I  + +  +   +      N
Sbjct: 659 AFDSDELISRLVIIARNRQIPEFLRVLELGDKIPGFIENLIVKKQQMEAIRFICAFEMVN 718

Query: 608 QPVPGPM 614
           +  PGP+
Sbjct: 719 RFPPGPI 725

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767145|emb|CAN75646.1| hypothetical protein VITISV_031269 [Vitis vinifera]

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 145/284 (51%), Gaps = 40/284 (14%)

Query: 325 QLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIG 384
           +L+F +    D  K F+    +L S   ++A  + + E  +   +LVQ    L       
Sbjct: 10  KLQFAESKKHDLKKAFE----DLQSHSSSLASLTLQWEDLQTHFDLVQSSIEL------- 58

Query: 385 YLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFD--SIRKAVEDHS 442
             +  K KE    SL+  L+ R+++LE+KE +    +    ++ +  +   +   ++  S
Sbjct: 59  QFERLKSKEIQLRSLEIALDRRAKELELKEWQLNRPIVPSGVKSEPLEDVPVNNGIDRFS 118

Query: 443 KNLLLQF---------------------------FDTVKRARDPALLVLHAMSGFYPPHS 475
            N  L+F                           F  ++ + DPA LVL AM GFYPPH 
Sbjct: 119 SNANLRFCVTMDGRNLQLFLNENADNHGRMGNEVFAALRMSADPAKLVLDAMEGFYPPHL 178

Query: 476 REGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVL 535
           + G +EF+ +++RRSC+LLLEQL+ V P I  QVR+EA ++A EWK KM V V +SLEVL
Sbjct: 179 KNGVVEFEGAVVRRSCVLLLEQLTRVGPPIRPQVREEAARLAHEWKAKMGVEVGDSLEVL 238

Query: 536 GFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGD 579
           GFL LL AYRL   FD  E+  L   V QHRQA +  + LG  D
Sbjct: 239 GFLWLLGAYRLTSDFDKNEILKLFENVVQHRQANELARALGLTD 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130872|ref|XP_002328397.1| predicted protein [Populus trichocarpa] gi|222838112|gb|EEE76477.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 91/129 (70%)

Query: 456 ARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMK 515
           + DPA LVL AM GFYPPH REGD+EF   +++RSC LLLEQL  ++P I   VR EA K
Sbjct: 31  SSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCNLLLEQLMKISPTIKPHVRKEATK 90

Query: 516 VAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTL 575
           +A  W  KM V   ++++VLGF +LLAAY LA AFD +EL S L I+A+++Q P+F + L
Sbjct: 91  LAFLWMTKMTVDGFHNMDVLGFFYLLAAYGLASAFDSDELISRLVIIARNKQTPEFFRVL 150

Query: 576 GFGDKVPGL 584
             GDK+P L
Sbjct: 151 ELGDKIPDL 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541044|ref|XP_003538993.1| PREDICTED: uncharacterized protein LOC100783311 [Glycine max]

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 273/570 (47%), Gaps = 92/570 (16%)

Query: 99  LECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKEL 158
           +E KEK+L  +++  G    E+  KE E + ++  +  +  EL SV+  I  C+    +L
Sbjct: 16  IEEKEKKLVSIKRQFGR---EIDAKEREYDVVTRKVEERNRELESVQRRITDCEW---KL 69

Query: 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKE 218
             ++ +I E  DE+        + QR I++ +++LA K+ + S I  +I + E+ LR K+
Sbjct: 70  DTVRRMITES-DEV------YQQKQRGIQDSDRELAEKEAHRSLIADMIREREQELRAKD 122

Query: 219 KSYGEV-------KKSLVLCETKLEREKKELEL----------TQSSIKELSVKF----- 256
             + +V       K  +      L+ +K+EL++          T+++IK +  +      
Sbjct: 123 AEFQQVLDEGMALKNKVAQLNDDLKTKKEELDVVTRSLINEQATETTIKSMRARIKQLLR 182

Query: 257 --HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV----------ELKKRE 304
             +  E K +    + +  E++ +  E+++  ++ +QK+Y   V          E K RE
Sbjct: 183 QPYESESKQKQFEGQAKELESKQKHYERQVKELQSKQKQYEGRVKELKLNEKLYERKVRE 242

Query: 305 LNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELK 364
           L    K  E   ++L S +KQ +   + +E  +K+++ + KEL S E+   +   E+  K
Sbjct: 243 LGSREKQYETRMKELESNEKQCETRMKEVESNAKQYEKRVKELVSHERQYVKSVIELNSK 302

Query: 365 KNQL--NLVQHESNLVQTRTIGYLKEFKEKE-------KHFDSLKKGLEDRSQDLEVKER 415
           + Q+   +V  ES   Q    G +KE + KE       K  +S++K ++++ +DLE K+ 
Sbjct: 303 EKQIEGQMVDLESKKNQYE--GLVKELESKEARCKVLLKELESIEKKIQEQMKDLEFKKN 360

Query: 416 EFEERVKEFELR---------EKEFDSIRKAV---------EDHSKNLLL---------- 447
           + E   K FE           ++ F +   A           D+SKNL L          
Sbjct: 361 QCESSRKSFEEEKLSKQKSNDQQHFTNANSASLFNQQNFTGADNSKNLPLFINLLEKYEL 420

Query: 448 ---QFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPE 504
              Q  D ++   +P  LVL  + GFY  HSR+G +E+D SI RR C LL+++L   +P 
Sbjct: 421 MCSQVSDALQTFANPTKLVLDTIKGFYTSHSRQGLIEYDASISRRICNLLMDELKKSSPV 480

Query: 505 INAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQ 564
           I  +V+ EA+K+A +WK  +    ++ LEVL F   +A Y +  +FD  EL+ LL I+A 
Sbjct: 481 IGIRVKQEAIKLATDWKANLVAGDKDCLEVLDFFKFVATYEIGSSFDAIELQRLLDIIAL 540

Query: 565 HRQAPKFCQTLGFGDKVPGLQCSITAEGRS 594
             Q     Q +G   +    Q S T +GR+
Sbjct: 541 QYQT---LQAIGKIKEPSDNQSSPTIDGRN 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813019|ref|XP_002874393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320230|gb|EFH50652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 152/575 (26%), Positives = 246/575 (42%), Gaps = 125/575 (21%)

Query: 98  ELECKEKELGLVQKXIGEC--------------NCELHLKENELNSLSESLNIKKEELSS 143
           E+E K K+L LV   I EC               CE+ LK  +L  +   L  ++ E+S+
Sbjct: 264 EIEIKTKDLTLVMDKIAECEKLFETRSSELIKTQCEVELKGKQLEQMDIDLERRRGEVSA 323

Query: 144 VEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSI 203
             E ++K Q + +EL            EI+ + K++  V   I E  KQL   ++ ++S 
Sbjct: 324 EMEHLDKSQTHSREL----------AQEIKRKRKELTAVLDKIAEYGKQLESVEQQLASQ 373

Query: 204 QTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKL 263
           Q L+E     L  K+K    +   L L  +             + ++E   +  S+  +L
Sbjct: 374 QKLLETRSSELVSKKKELDGLSLDLDLANS-----------LNNEMRETCKQIKSKGREL 422

Query: 264 ELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKD 323
           E + R ++     +ES++  L+   ++          K+   NEI + I +LS ++ SK+
Sbjct: 423 EEIERLIQERSGHIESIKLLLEEHSEELAS-------KEERHNEITEAIRKLSSEIVSKE 475

Query: 324 --------------KQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLN 369
                         ++L   ++ +E+ + EF  K+KEL S++ T  EC +  E+K+ +L 
Sbjct: 476 ETIQQLSEKQLVKQRKLDSTEKRLENTTAEFVIKEKELGSVKDTYRECLQNWEIKEKELK 535

Query: 370 LVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFEL--- 426
            +Q E   +Q      LK+F+ KE     LK  L +R ++L +KE+    R ++ EL   
Sbjct: 536 SLQEEIKKIQ----DSLKDFQSKEAEQVKLKASLMEREKELGLKEKRIRARSEKIELKEK 591

Query: 427 ----REKEFDS-----------IRKAVEDHSKN--------------------------- 444
               RE+  D            + K V+D+  N                           
Sbjct: 592 KLDAREERIDKKDEQLKSTELKLAKCVKDYELNAKKLASFCQQNNPDQQVDLVRDASVCD 651

Query: 445 -----------------LLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSII 487
                            L L     +K + DPA LVL  + G    H R    + D   +
Sbjct: 652 EKTLQLLLRGHLKKCDQLHLDVLGALKASSDPAKLVLDTIQGL---HERMAVTKLDPDSV 708

Query: 488 RRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLA 547
           RRS I LLE L  ++ E   +V+ EA+K A EWK    V  EN +EVLGFLH LAA+ LA
Sbjct: 709 RRSSICLLECLMNMSQEPKTEVQVEAIKSATEWKNTTLVKAENPVEVLGFLHFLAAFSLA 768

Query: 548 PAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVP 582
             FD +++++L       + AP  C+ LG     P
Sbjct: 769 YTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAP 803

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	624
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.891	0.470	0.217	8.2e-30
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.453	0.298	0.244	3.2e-21
TAIR|locus:2082214	269	AT3G12190 "AT3G12190" [Arabido	0.346	0.802	0.286	3.4e-16
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.209	0.234	0.333	5.9e-15
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.197	0.261	0.371	3.5e-13
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.217	0.287	0.283	1.3e-11
DICTYBASE|DDB_G0295683	1589	DDB_G0295683 "cofilin/tropomyo	0.604	0.237	0.233	3.1e-11
UNIPROTKB|E1C2P9	1325	KTN1 "Kinectin" [Gallus gallus	0.628	0.295	0.211	5.3e-11
UNIPROTKB|Q9X0R4	1170	smc "Chromosome partition prot	0.363	0.194	0.234	5.4e-11
UNIPROTKB|F1NF60	1368	KTN1 "Kinectin" [Gallus gallus	0.628	0.286	0.211	5.5e-11

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 8.2e-30, P = 8.2e-30
 Identities = 129/593 (21%), Positives = 262/593 (44%)

Query:     1 METWTVNISEELRVAESKKETLRRSFDMA-HSQANSVLLFTVQWKDLEEHFDLTKKSLEK 59
             +E + V+++ E +    + +T RR  +     +   + L   +  + E+ F+     L K
Sbjct:   237 LEKYCVDVNAEKKNL-GRTQTHRRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLELIK 295

Query:    60 QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNXXXXXXXXXXXXVQKXIGECNCE 119
                 V++K + L+Q   ++E    ++  V + +E                +K       E
Sbjct:   296 TQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRK-------E 348

Query:   120 LHLKXXXXXXXXXXXXIKKEELSSVEEWIN----KCQAYQKELQLLK---NLIKECCDEI 172
             L               + +EEL+  ++ ++    +  + +KEL  L     L+    +E+
Sbjct:   349 LTAVLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNEL 408

Query:   173 ELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCX 232
             +   +++    + +E+ E+ +  +  +  SI+ L+E++ E L  KE+ + E+ +++    
Sbjct:   409 KETVQRIESKGKELEDMERLIQERSGHNESIKLLLEEHSEELAIKEERHNEIAEAV---- 464

Query:   233 XXXXXXXXXXXXXQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292
                          + +I++LS K HS++ KL+   + +     E+ S E +L S++   +
Sbjct:   465 ---RKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCLEETTAELVSKENELCSVKDTYR 521

Query:   293 KYFDDVELKKRELNEIR---KYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSS 349
             +   + E+K++EL   +   K I++  +D  SK+ +L  +++S+ +  KE   KKK++  
Sbjct:   522 ECLQNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAELVKLKESLTEHEKELGLKKKQIHV 581

Query:   350 IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
               + I    K+++ ++ +L+    +    + +    +KE++   K   S     +  + D
Sbjct:   582 RSEKIELKDKKLDAREERLDKKDEQLKSAEQKLAKCVKEYELNAKKLASF---CQQNNPD 638

Query:   410 XXXXXXXXXXXXXXXXXXXXXXDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSG 469
                                     ++K  + H     L     +K + DPA LVL+ +  
Sbjct:   639 QQVDLVRDASVCDEKTLQLLLRGHLKKCDQLH-----LDVLRALKASSDPAKLVLNTIQR 693

Query:   470 FYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVE 529
                 H +    + D   +RR  I LLE L  ++PE   +V+ EA+K   EWK    V  E
Sbjct:   694 L---HEKMAVTKLDPDSVRRGSICLLECLMDMSPEPKTEVQVEAIKSVTEWKNTTLVKAE 750

Query:   530 NSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVP 582
             N +EVLGFLH L+A+ LA  FD +++++L       + AP  C+ LG     P
Sbjct:   751 NPVEVLGFLHFLSAFSLAYTFDADKVQNLFDAAFLRQYAPSLCEALGVSSLAP 803

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
 Identities = 72/294 (24%), Positives = 118/294 (40%)

Query:   299 ELKKRELNEIRKYIEELSQDLASKDKQLKFV---------QQSIEDCSKEFQWKKKELSS 349
             E KK +     KYI+E   +     K LK +         Q+++E   K ++ ++     
Sbjct:   410 EKKKADAAMAIKYIKEAKAETMFPAKILKRLAVVKNDESAQRAMEPVQKSYEKRQSTTKG 469

Query:   350 IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
             +EK+ A+ S   E +K+ +   +       ++ +   +           +K+   D   D
Sbjct:   470 VEKSEAKSSIPYE-QKHVIKRPRLTEPTAPSQNLTVKQPEVVCVPTGKQVKESGADHQPD 528

Query:   410 XXXXXXXXXXXXXXXXXXXXXXDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSG 469
                                   D +R+ VE           + +K   DPA L L     
Sbjct:   529 TIATHPSGTETKLNILSGSIKADMLRELVEKQPLKESEDLSNALKCTPDPAKLFLDTSMA 588

Query:   470 FYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVE 529
               P ++ EG  EF + I   SC LLL QL  + P+I   V+ +A K+A  WK K+  +  
Sbjct:   589 LCPTNT-EGGYEFKMLITSASCSLLLNQLKKLLPKIGHPVKGDAKKLAVYWKDKIAKSKR 647

Query:   530 NSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPG 583
             + LEV+ FL  L  + +   F  ++L  LL        +P  CQ LG  D +PG
Sbjct:   648 DQLEVICFLQFLGIFGIVSEFKADDLLGLLDNSYWQTVSPDLCQFLGLDDAIPG 701

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082214 AT3G12190 "AT3G12190" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 64/223 (28%), Positives = 112/223 (50%)

Query:    10 EELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIR 69
             ++LRVA+ KKE LRRS   A S+A+ VL FT+ W+DLE HFD  +  L K+S  ++ K +
Sbjct:     4 KKLRVAKWKKERLRRSLMKAESKASDVLSFTLSWRDLESHFDSIESDLVKRSQEIESKEK 63

Query:    70 LLDQRAKEIESKEIKLVFVEKKIEDCNXXXXXXXXXXXXVQKXIGECNCELHLKXXXXXX 129
              L++R+ E+ESK  K++  EK+  + N             Q+ +     E+  +      
Sbjct:    64 HLEKRSHELESKG-KIL--EKRAREINTADGFRRDFEEK-QRKLDRLKREIESEEKKRFL 119

Query:   130 XXXXXXIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEER 189
                    +K EL    E +   Q    +L +  +  KE  +E+ ++++K  E+ +  +  
Sbjct:   120 VQKLNRERKFELKRTREQVEALQKNDMKLDVKHS--KEMSEELLVQQEKYEEILKKKKLE 177

Query:   190 EKQLAYKQRNISSIQTLIEDYEEVLRDK-EKSYGEVKKSLVLC 231
             EK+L    R+++  +  +      +  + E+   E KK+LVLC
Sbjct:   178 EKKLKDCTRDLALREGDLRWVSMRMTKRCEELRWEKKKNLVLC 220

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
 Identities = 49/147 (33%), Positives = 79/147 (53%)

Query:   454 KRARDPALLVLHAMSGFYPPHSREGDLEFDVSII--RRSCILLLEQLSTV---------A 502
             + A +PA LVL ++ GFYP  +   D + D +++  RR+CI+L+E LS +         A
Sbjct:   210 RAAANPASLVLDSLEGFYPMEAPTADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLA 269

Query:   503 PEINAQVRDEAMKVAGEWKK-----KMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELES 557
               ++  V+  A  +A  W        M     NSLE   FL LLA + +   F  +EL  
Sbjct:   270 VVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLK 329

Query:   558 LLCIVAQHRQAPKFCQTLGFGDKVPGL 584
             L+ +V++ RQA + C++LG  +K+PG+
Sbjct:   330 LIPMVSRRRQAAELCRSLGLAEKMPGV 356

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 49/132 (37%), Positives = 69/132 (52%)

Query:   453 VKRARDPALLVLHAMSGF-YPPHSREGDLEFDVSIIRRSCILLLEQLSTVAPEINAQVRD 511
             ++ + D A +VL A+ G  Y P S  G   FDV   RR  +LL+E L  +   I    R+
Sbjct:   135 IRYSPDTASMVLDAIEGSNYTPSS-SGR-SFDV---RRVFVLLMEVLIEINANITVDTRN 189

Query:   512 EAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKF 571
              A K+A  WK K+ V      E L FLHL+AA+ L   FD EEL   + ++A+++QA   
Sbjct:   190 RAKKLAYHWKSKVGV---KPFEALVFLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLV 246

Query:   572 CQTLGFGDKVPG 583
             C  +G   K  G
Sbjct:   247 CNKIGVDRKRVG 258

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 40/141 (28%), Positives = 72/141 (51%)

Query:   438 VEDHSKNLLL--QFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLL 495
             +E+  K L +  +  + ++ + +PA LVL A+ G Y   S           ++R  +LLL
Sbjct:   107 IENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSYHCSSPSSSSSARAIDVKRIFVLLL 166

Query:   496 EQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAFDGEEL 555
             E L  +   +   +R+ A  +A +WK  +        E LGFLHL+AA+ L   F  EE+
Sbjct:   167 EALIEINANLTNDLRERARTIAYDWKPNIG---NKPSEALGFLHLVAAFELGSLFSTEEI 223

Query:   556 ESLLCIVAQHRQAPKFCQTLG 576
                + ++++++QA   C+ +G
Sbjct:   224 CDYIFLISKYKQATTICKKIG 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 193 (73.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 95/406 (23%), Positives = 187/406 (46%)

Query:    11 ELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHF---DLTKKSLEKQSNYVDVK 67
             E++ +E++ +  R      H Q   +     Q +DLEE      L ++S +++  Y D  
Sbjct:   407 EIQESENRFKQDREQLINDHKQQEKL---EQQKRDLEETRIIEQLKQESEQRKKQYEDHL 463

Query:    68 IRLLDQRAKEIESKEIKLVFVEKKIEDCNXXXXXXXXXXXXVQKXIGECNCELHLKXXXX 127
                  +R KE++   +K    E+ IE                Q+   E   +  L+    
Sbjct:   464 KERESEREKEVQQLLLKQKEAEQLIEQQKQDQQKLK------QERELEIRKQQQLEHQLE 517

Query:   128 XXXXXXXXIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIE 187
                      KK+EL   +EW  K Q YQ +LQL K   K+   E+E RE+++  +  S +
Sbjct:   518 EERKQEQK-KKKELDD-QEWKRKEQQYQSDLQLEKE--KQSALELE-REREIQSILESEK 572

Query:   188 EREKQLAYK-QRNISSIQTLIEDYE-EVLR-DKEKSYGEVKKSLVLCXXXXXXXXXXXXX 244
             +R++Q+  + Q+     + L + +E E L+ ++E+   E KKSL +              
Sbjct:   573 QRQQQVELEIQQEKERTKQLQQQWEQEKLKLEEERKELENKKSLEMAQKKQELLELNKKI 632

Query:   245 XQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRE 304
              Q   ++L  +   E+++ +   ++ +L + E+E   ++    +K++++    +E ++RE
Sbjct:   633 EQEQ-RDLEERIQKEQKEKDQREKQDQLAQMELEREREREKEEKKRKQQQLAQLEKEERE 691

Query:   305 LNE-IRKYIE-ELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVE 362
              NE + K  + +L Q++  K+++LK  QQ  E   KE + K+++    EK   +   + E
Sbjct:   692 RNEKLEKDRQLQLEQEI-EKERKLK--QQQKEKEQKEQKEKREQREKEEKEEKDKKDKEE 748

Query:   363 LKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQ 408
              +K +L   Q +    + +     +E KEKE+  +  K+  E+R +
Sbjct:   749 KEKQELKKKQQQQQQQKEKE---KQERKEKEEREEREKEEREEREE 791

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C2P9 KTN1 "Kinectin" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 87/411 (21%), Positives = 175/411 (42%)

Query:     9 SEELRVAE--SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHF---DLTKKSLEKQSNY 63
             S +LRV E   + + L       HSQ  +    +V  ++L +     D   K +E     
Sbjct:   560 SMQLRVQELVEQNDALNAQLQKLHSQMAAQTSASVLAEELHKVIAEKDKQLKQMEDSLGN 619

Query:    64 VDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNXXXXXXXXXXXXVQKXIGECNCELHLK 123
                 +   ++  K +++  + L    +K++               +QK I   + ++   
Sbjct:   620 EHANLTSKEEELKVLQNMNLSLKSEIQKLQALTNEQAAAAHELERMQKSIHIKDDKIRTL 679

Query:   124 XXXXXXXXXXXXIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDE-IELREKKVGEV 182
                           KEE   +++  NK    Q E+Q L+ L+ E      E  +  + E+
Sbjct:   680 EEQLREELAQTVNTKEEFKILKDQ-NK--TLQAEVQKLQALLSEPVQPTFEANKDLLEEM 736

Query:   183 QRSIEEREKQLAYKQRNISS--IQTLIEDYE-EVLRDKEKSYGEVKKSLVLCXXXXXXXX 239
             +R + ER+ ++   +  + +  IQ   ++ E +VLR +  S  +  +SL +         
Sbjct:   737 ERGMRERDDKIKTVEELLEAGLIQMANKEEELKVLRTENSSLRKELQSLQIQLSEQVSFQ 796

Query:   240 XXXXXXQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299
                   Q  I E   K  S EE L+    KV   E  V++L QK+++++++       +E
Sbjct:   797 SLVDELQKVIHEKDGKIKSVEELLQAEILKVANKEKTVQALTQKIEALKEEVGN--SQLE 854

Query:   300 LKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSK 359
             ++K+    I   ++EL   L  K+ Q+K ++  +E+  KE   K ++L   + T+A+ + 
Sbjct:   855 MEKQV--SITSQVKELQTLLKGKENQVKTMEALLEEKEKEIVQKGEQLKGQQDTVAQLTS 912

Query:   360 EV-ELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
             +V EL++  L  +Q      Q + +      + +E+    LK  LE++ ++
Sbjct:   913 KVQELEQQNLQQLQQVPAASQVQDLE--SRLRGEEEQISKLKAVLEEKERE 961

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|Q9X0R4 smc "Chromosome partition protein Smc" [Thermotoga maritima MSB8 (taxid:243274)]

 Score = 160 (61.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
 Identities = 58/247 (23%), Positives = 126/247 (51%)

Query:   175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDY--EEVLRDKEKSYGEVKKSLVLCX 232
             R  K+  +++ +EE E+Q+A K+  ++S++T  E+   +E L  +E      K S     
Sbjct:   667 RRIKLKHLEQEMEETERQIAEKRDELASLKTEQENLKNQEALVQRELFELSRKSSSTKTV 726

Query:   233 XXXXXXXXXXXXXQ-SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQ 291
                          +  ++++L V++ ++EE L    R+ ++ E E++ L+Q  +++++  
Sbjct:   727 LSEILRSINQLQEEVENLEKLLVEYRAKEEGLNA--RREKIFE-EIDELKQNRENLQRSL 783

Query:   292 KKYFDDVELKKRELNEIRKYI----EELSQDLASKD---KQLKFVQQSIEDCSKEFQWKK 344
              +Y +++E +K+ L+E+ + I     E+   L +KD   K+++   + IE  ++E +  K
Sbjct:   784 TEYSEELEKEKKILDELNEKIFTLRAEVGNLLETKDRYEKEMRDTGKMIERIARETEDIK 843

Query:   345 KELSSIE-------KTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFD 397
              +++S+E       K I E  +E+E  K +++ V     L ++     ++E +E E   D
Sbjct:   844 LQMTSLEEEMENYRKFIREHEREIEHLKKEMDSVFEAMKLHRSGKEEKMRELQEVENRMD 903

Query:   398 SLKKGLE 404
              LK+  E
Sbjct:   904 ELKEEKE 910

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|F1NF60 KTN1 "Kinectin" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.5e-11, P = 5.5e-11
 Identities = 87/411 (21%), Positives = 175/411 (42%)

Query:     9 SEELRVAE--SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHF---DLTKKSLEKQSNY 63
             S +LRV E   + + L       HSQ  +    +V  ++L +     D   K +E     
Sbjct:   564 SMQLRVQELVEQNDALNAQLQKLHSQMAAQTSASVLAEELHKVIAEKDKQLKQMEDSLGN 623

Query:    64 VDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNXXXXXXXXXXXXVQKXIGECNCELHLK 123
                 +   ++  K +++  + L    +K++               +QK I   + ++   
Sbjct:   624 EHANLTSKEEELKVLQNMNLSLKSEIQKLQALTNEQAAAAHELERMQKSIHIKDDKIRTL 683

Query:   124 XXXXXXXXXXXXIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDE-IELREKKVGEV 182
                           KEE   +++  NK    Q E+Q L+ L+ E      E  +  + E+
Sbjct:   684 EEQLREELAQTVNTKEEFKILKDQ-NK--TLQAEVQKLQALLSEPVQPTFEANKDLLEEM 740

Query:   183 QRSIEEREKQLAYKQRNISS--IQTLIEDYE-EVLRDKEKSYGEVKKSLVLCXXXXXXXX 239
             +R + ER+ ++   +  + +  IQ   ++ E +VLR +  S  +  +SL +         
Sbjct:   741 ERGMRERDDKIKTVEELLEAGLIQMANKEEELKVLRTENSSLRKELQSLQIQLSEQVSFQ 800

Query:   240 XXXXXXQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299
                   Q  I E   K  S EE L+    KV   E  V++L QK+++++++       +E
Sbjct:   801 SLVDELQKVIHEKDGKIKSVEELLQAEILKVANKEKTVQALTQKIEALKEEVGN--SQLE 858

Query:   300 LKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSK 359
             ++K+    I   ++EL   L  K+ Q+K ++  +E+  KE   K ++L   + T+A+ + 
Sbjct:   859 MEKQV--SITSQVKELQTLLKGKENQVKTMEALLEEKEKEIVQKGEQLKGQQDTVAQLTS 916

Query:   360 EV-ELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
             +V EL++  L  +Q      Q + +      + +E+    LK  LE++ ++
Sbjct:   917 KVQELEQQNLQQLQQVPAASQVQDLE--SRLRGEEEQISKLKAVLEEKERE 965

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_70000144 hypothetical protein (1006 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	624
pfam07899	293	pfam07899, Frigida, Frigida-like protein	3e-35
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-13
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
pfam13166	713	pfam13166, AAA_13, AAA domain	8e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
pfam13166	713	pfam13166, AAA_13, AAA domain	2e-05
pfam13166	713	pfam13166, AAA_13, AAA domain	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-05
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	5e-05
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	5e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
TIGR00606	1311	TIGR00606, rad50, rad50	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	0.003
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.003
COG0497	557	COG0497, RecN, ATPase involved in DNA repair [DNA	0.003
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.003
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.003

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  134 bits (340), Expect = 3e-35
 Identities = 71/157 (45%), Positives = 96/157 (61%), Gaps = 8/157 (5%)

Query: 435 RKAVEDHSKNLLL---QFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSC 491
            K V ++ K L     +    ++ A DPA LVL A+ GFYPP S+ G  E  +  +RRSC
Sbjct: 28  LKFVIENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGK-EDKMVDVRRSC 86

Query: 492 ILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKM----RVAVENSLEVLGFLHLLAAYRLA 547
           +LLLEQL  V P I+  V++EA K+A EWK K+     V    SLE LGFL LLAA+ L 
Sbjct: 87  VLLLEQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLV 146

Query: 548 PAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGL 584
             FD +EL  L  +V++ +QAP+ C++LG  DK+P L
Sbjct: 147 SEFDQDELLKLFVMVSRRKQAPELCRSLGLADKMPDL 183

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 80.5 bits (199), Expect = 1e-15
 Identities = 71/350 (20%), Positives = 180/350 (51%), Gaps = 11/350 (3%)

Query: 119  ELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKK 178
            EL   E EL  L   L   +EEL S++   N+ ++ +  L+ L+  ++E   ++E  +++
Sbjct: 668  ELKELEEELAELEAQLEKLEEELKSLK---NELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 179  VGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLERE 238
            +  ++  +E+ + +L   +  +  ++  +E+ +E L + E+    ++++L   + ++E  
Sbjct: 725  LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 239  KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV 298
            +++ +  Q  ++EL  +    E +L+ L R++   E   E LEQ+++ + ++ ++  + +
Sbjct: 785  EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKL 844

Query: 299  ELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECS 358
            +  + EL E+ K +EEL ++L   + + + ++  +++  +E +  ++EL  +E  +AE  
Sbjct: 845  DELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904

Query: 359  KEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFE 418
            +E+E  + +L   + E+ L +        E + +E++ D+L+  LE   + LE +     
Sbjct: 905  EEIEKLRERLE--ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Query: 419  ----ERVKEFELREKEFDSIRKAVEDH--SKNLLLQFFDTVKRARDPALL 462
                  ++E+E  E+ ++ ++   ED   +K  LL+  + + + +     
Sbjct: 963  PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFK 1012

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 72.8 bits (179), Expect = 3e-13
 Identities = 73/322 (22%), Positives = 160/322 (49%), Gaps = 16/322 (4%)

Query: 124 ENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQ 183
           E +L    E+L   ++ L  +E+ + K +   ++ +  + L  E      LRE ++  + 
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE------LRELELALLL 231

Query: 184 RSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE 243
             ++E  K+L   +  +S ++  +E+ +E L + EK   E+K  L     +LE  ++EL 
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
             +  I+EL  +     E+LE L  ++   E  +E L++K+++++++ ++    +E  ++
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 304 ELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVEL 363
            L E+ +  EEL + L++  ++L+          + F+  ++EL+ +E  +AE   E+E 
Sbjct: 352 LLAELEEAKEELEEKLSALLEELE----------ELFEALREELAELEAELAEIRNELEE 401

Query: 364 KKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKE 423
            K ++  ++     +  R     +E KE E   + L+  LE+ +++LE  E + EE    
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Query: 424 FELREKEFDSIRKAVEDHSKNL 445
            +  E+E   +++ ++   K L
Sbjct: 462 LKELERELAELQEELQRLEKEL 483

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 71.3 bits (175), Expect = 9e-13
 Identities = 65/294 (22%), Positives = 146/294 (49%), Gaps = 22/294 (7%)

Query: 76  KEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLN 135
            E+   E+ L+    K+++   ELE  E+EL  +++ + E        + EL    + + 
Sbjct: 220 AELRELELALL--LAKLKELRKELEELEEELSRLEEELEE-------LQEELEEAEKEIE 270

Query: 136 IKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAY 195
             K EL  + E   + +  Q+EL  LK  I+E        E ++  ++  +EE E +L  
Sbjct: 271 ELKSELEELRE---ELEELQEELLELKEEIEE-------LEGEISLLRERLEELENELEE 320

Query: 196 KQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVK 255
            +  +  ++  IE  +E L ++E    E+++ L   E   E  +++L      ++E    
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE---L 377

Query: 256 FHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 315
           F +  E+L  L  ++    NE+E L+++++S+ ++ ++  + +E  K EL E+   +EEL
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437

Query: 316 SQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLN 369
             +L   +++L+ +++ +E+     +  ++EL+ +++ +    KE+   + +L+
Sbjct: 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 71.3 bits (175), Expect = 9e-13
 Identities = 64/304 (21%), Positives = 133/304 (43%), Gaps = 21/304 (6%)

Query: 58  EKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECN 117
           EK   Y  +     +    E+  ++  L   E++ E    +L   E+EL  + + I E  
Sbjct: 208 EKAERYQALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASLEEELEKLTEEISELE 264

Query: 118 CELHLKENELNSLSESLNIK-KEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELRE 176
             L   E  L  L++ +    +EE   V+E I + +A   E+  L+  I E   E+E  E
Sbjct: 265 KRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA---EIASLERSIAEKERELEDAE 321

Query: 177 KKV-------GEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229
           +++        ++   IEE E+++  +++    +     + +E L D      EV K   
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381

Query: 230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRK 289
               +L+  +++LE  +  I EL  +    +E+L+ L  ++      +  +E K+     
Sbjct: 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI----- 436

Query: 290 QQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSS 349
              +  ++ E K  E+ +    +E+L+ DL+  +++L  +++  +   KE    ++EL+ 
Sbjct: 437 --NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

Query: 350 IEKT 353
            E  
Sbjct: 495 AEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.1 bits (172), Expect = 2e-12
 Identities = 94/409 (22%), Positives = 189/409 (46%), Gaps = 44/409 (10%)

Query: 29   AHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFV 88
                  S L    + K+LEE     +  LEK    ++ +++ L    + +E    +L   
Sbjct: 655  GSRNKRSSLAQKRELKELEEELAELEAQLEK----LEEELKSLKNELRSLEDLLEEL--- 707

Query: 89   EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWI 148
             +++E+   +LE  ++EL  +++ + +    L   E EL  L E L   +E L  +EE +
Sbjct: 708  RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL 767

Query: 149  NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE 208
                  ++ L  LK  I+E  ++ +  ++++ E++  +EE E++L   +R + S++   E
Sbjct: 768  ES---LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 209  DYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHR 268
              E+ + + E+   E+++ L   E +LE  +KELE  +  ++EL       E + E L  
Sbjct: 825  RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEEL-------EAEKEELED 877

Query: 269  KVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKF 328
            +++  E E E LE++L  +  +  +  +++E  +  L E+   +E L  +L   +++L  
Sbjct: 878  ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL-- 935

Query: 329  VQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKE 388
              +   + + E +  ++E+  +E+ I             +NL               ++E
Sbjct: 936  --EEEYEDTLETEL-EREIERLEEEIEALG--------PVNL-------------RAIEE 971

Query: 389  FKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKE-FDSIRK 436
            ++E E+ ++ LK   ED  +  E      EE  KE   R KE FD I +
Sbjct: 972  YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 19/295 (6%)

Query: 122 LKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGE 181
           L+E EL  L   L   +EEL  ++E + +    ++EL+ L   ++E  +++E    +V E
Sbjct: 222 LRELELALLVLRLEELREELEELQEELKE---AEEELEELTAELQELEEKLEELRLEVSE 278

Query: 182 VQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKE 241
           ++  IEE +K+L      IS ++   +   E L + E+   E++  L   E+KL+   +E
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 301
           L   +  ++EL  +  S E +LE L       E E+E LE +L+ + +Q +     V   
Sbjct: 339 LAELEEKLEELKEELESLEAELEEL-------EAELEELESRLEELEEQLETLRSKVAQL 391

Query: 302 KRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKK-----ELSSIEKTIAE 356
           + ++  +   IE L   L   + + + +QQ IE+  K+ +  +      EL  +E+ + E
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

Query: 357 CSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLE 411
             +E+E  +  L  ++ E    +      L   + +     +    LE   ++LE
Sbjct: 452 LQEELERLEEALEELREELEEAEQA----LDAAERELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.6 bits (163), Expect = 2e-11
 Identities = 83/363 (22%), Positives = 169/363 (46%), Gaps = 24/363 (6%)

Query: 89   EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWI 148
            ++++     EL   E  L  + + + + + ++   E E+  L +     KE L  +EE +
Sbjct: 687  KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746

Query: 149  NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE 208
            +  +   +E++ +K+ +KE    IE  E+ + +++ ++ + E +L++ +  I  IQ  + 
Sbjct: 747  SSLE---QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 209  DYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHR 268
              EE +   E    E+++ L     + E  +KE++  Q    +L  +  S E+++E L+ 
Sbjct: 802  KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 269  KVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKF 328
            K    E E+E LE  L  +  +      + +  + +L E+ + IEEL   +  K K+L  
Sbjct: 862  KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 329  VQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVE----LKKNQLNLVQHESNLVQTRTIG 384
            ++  +E         ++ELS IE    E  +  E    L+  Q  L + E  +     + 
Sbjct: 922  LKAKLEA-------LEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVN 974

Query: 385  YL--KEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHS 442
             L  +E++E  K  D LK+        LE + +   ER++E+E  +K+ +   +A E  +
Sbjct: 975  MLAIQEYEEVLKRLDELKEKRA----KLEEERKAILERIEEYE--KKKREVFMEAFEAIN 1028

Query: 443  KNL 445
            +N 
Sbjct: 1029 ENF 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 5e-11
 Identities = 70/346 (20%), Positives = 158/346 (45%), Gaps = 31/346 (8%)

Query: 103 EKELGLVQKXIGECNCELHLKENELNSLSESLNI------KKEELSSVEEWINKCQAYQK 156
           E++L   ++ +      L   E +L  L             K EL  +E  +        
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELAL-----LLA 232

Query: 157 ELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRD 216
           +L+ L+  ++E  +E+   E+++ E+Q  +EE EK++   +  +  ++  +E+ +E L +
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 217 KEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENE 276
            ++   E++  + L   +LE  + ELE  +  ++EL  K  + +E+LE     +   E  
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 277 VESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDC 336
           +  LE+  + +           E     L E+ +  E L ++LA  + +L  ++  +E+ 
Sbjct: 353 LAELEEAKEELE----------EKLSALLEELEELFEALREELAELEAELAEIRNELEE- 401

Query: 337 SKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHF 396
                  K+E+ S+E+ +   S+ +E  K +L  ++ E   +QT      +E +E E+  
Sbjct: 402 ------LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455

Query: 397 DSLKKGLEDRSQD---LEVKEREFEERVKEFELREKEFDSIRKAVE 439
           + L+  L++  ++   L+ + +  E+ +   E R    ++ ++A +
Sbjct: 456 EELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.1 bits (159), Expect = 8e-11
 Identities = 60/268 (22%), Positives = 131/268 (48%), Gaps = 11/268 (4%)

Query: 171 EIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230
           EIE  E+K+ E++  I E EK LA  ++ +  ++  +E   + L +  +    ++K L  
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 231 CETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK------- 283
            E ++E+ ++ +      + EL  +    EE+LE    ++   E E+E LE +       
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWK 343
           L ++R+   +   ++ L   E   +R+ +E L + +A+ +++L+ +++ IE+ S++ +  
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 344 KKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGL 403
             E+  +E+ I E   E+E   N+   ++    L+++      +E +E E     L++ L
Sbjct: 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

Query: 404 EDRSQDLEVKEREFEERVKEFELREKEF 431
           E+  + L     + E R++  E+R    
Sbjct: 918 EELREKLA----QLELRLEGLEVRIDNL 941

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 73/346 (21%), Positives = 150/346 (43%), Gaps = 23/346 (6%)

Query: 89  EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWI 148
           ++K E    ELE  E+ +  +   I E   +L     E         + K E    E + 
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLK-EKREYEGYE 227

Query: 149 NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE 208
                  KE + L+   +    ++   E+++ ++   I E EK+L   ++ +  +   I+
Sbjct: 228 -----LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282

Query: 209 DY--EEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELL 266
           D   EE LR KEK  GE++  +   E  +  +++ELE  +  + +L  +           
Sbjct: 283 DLGEEEQLRVKEK-IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA----- 336

Query: 267 HRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQL 326
                    E+E LE++++  RK++ K  ++    K EL ++R  +EE+ ++ A    +L
Sbjct: 337 ---------EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 327 KFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYL 386
           K  ++ +E   +E    K+EL  +++ +   S+E+      +  ++ + N ++       
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447

Query: 387 KEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFD 432
            E K++E   + L   L    Q+L   + E++   KE    ++E  
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 74/371 (19%), Positives = 166/371 (44%), Gaps = 46/371 (12%)

Query: 16  ESKKETLRRSFDMAHSQAN----SVLLFTV--QWKDLEEHFDLTKKSLEKQSNYVDVKIR 69
           E +KET R+   +  ++ N      +L  +  Q K LE   +  ++  E ++   ++++ 
Sbjct: 172 ERRKETERK---LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELA 228

Query: 70  L-----------LDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNC 118
           L           L++  +E++  E +L  +  ++++   +LE    E+  +++ I E   
Sbjct: 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK 288

Query: 119 ELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKK 178
           EL+   NE++ L +   I +E L+++E                         ++E  E +
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLE------------------------RQLEELEAQ 324

Query: 179 VGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLERE 238
           + E++  ++E  ++LA  +  +  ++  +E  E  L + E    E++  L   E +LE  
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV 298
           + ++   +  I  L+ +    E +LE L  +    + E+E L +KL+    + K+   ++
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAEL 442

Query: 299 ELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECS 358
           E  + EL E+++ +E L + L    ++L+  +Q+++   +E    +  L S+E+      
Sbjct: 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502

Query: 359 KEVELKKNQLN 369
              E  K  L 
Sbjct: 503 GFSEGVKALLK 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 52/266 (19%), Positives = 122/266 (45%), Gaps = 5/266 (1%)

Query: 178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLER 237
           ++  ++  +E  +++L+  Q  +  I+  +++  + L D  +  GE++K +   E + E+
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734

Query: 238 EKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSM-RKQQKKYFD 296
            K+ LE  +  +  L  +  + + +L+ L  ++   E ++  LE+ L+ +  +       
Sbjct: 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP 794

Query: 297 DVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKEL----SSIEK 352
           +++ +  +L E    IE   +++  K  +L   ++ +E   +E Q ++ +L     SIEK
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854

Query: 353 TIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEV 412
            I   + + E  + +L  ++     +++R     KE  E E     L++ +E+    +E 
Sbjct: 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914

Query: 413 KEREFEERVKEFELREKEFDSIRKAV 438
           K +   E   + E  E+E   I    
Sbjct: 915 KRKRLSELKAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 66/339 (19%), Positives = 159/339 (46%), Gaps = 25/339 (7%)

Query: 124  ENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQ 183
            E ++  L E +   ++ L+ + +   + +  ++EL+ L+  ++E   +I    K +  ++
Sbjct: 683  EEKIEELEEKIAELEKALAELRK---ELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 184  RSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE 243
              +E+ E+++A   + ++ ++  IE+ EE L + E+   E +  +   E ++E+ K+EL+
Sbjct: 740  AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 244  LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
              + ++ EL  +     E+   L  ++   E  + + E++L+ + +Q ++  +D+E    
Sbjct: 800  ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859

Query: 304  ELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVEL 363
            E+ E+ + IEEL  +L +   +   +++++     E +   +EL  +E   +E  +E+E 
Sbjct: 860  EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919

Query: 364  KKNQLN--------LVQHESNLVQTRTIGY---LKEFKEKEKHFDSLKKGLEDRSQDLEV 412
             + +L         L     NL +  +  Y   L+E +  E   +  ++    R + LE 
Sbjct: 920  LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979

Query: 413  K-----------EREFEERVKEFELREKEFDSIRKAVED 440
            K             E+EE  + ++    + + + +A E 
Sbjct: 980  KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKET 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 50/245 (20%), Positives = 123/245 (50%), Gaps = 7/245 (2%)

Query: 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK 234
           R +++ E++  IEE E+++A  ++ ++ ++  +E+ EE L    K   E+ + +      
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY 294
           L R + E+E  +  I +LS +    E ++E L  ++   E E+   E +++ +  Q ++ 
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 295 FDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
            ++++  +  L+E+R  +  L+++ A+  ++L+ +++ I    +  +  ++++  + + I
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 355 AECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKE 414
              + E+E  + +  + + ES L        L E    E+    L+  LE+ S++L   E
Sbjct: 855 ESLAAEIE--ELEELIEELESELE-----ALLNERASLEEALALLRSELEELSEELRELE 907

Query: 415 REFEE 419
            +  E
Sbjct: 908 SKRSE 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 60/313 (19%), Positives = 139/313 (44%), Gaps = 9/313 (2%)

Query: 44  KDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKE 103
           ++LEE  +  ++ + +    +    + L++  +E+E    +L  + ++I     +L   E
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 104 KELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKN 163
            E+  +++ I + + EL   E E+  L E L   +EEL+  E  I + +A  ++L+    
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223
            ++E  DE+      + E   ++ ER + L   +R I++ +  +ED EE + +  +    
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESL---ERRIAATERRLEDLEEQIEELSEDIES 856

Query: 224 VKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK 283
           +   +   E  +E  + ELE   +    L         +LE L  ++R  E++   L ++
Sbjct: 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWK 343
           L+ +R++  +    +E  +  ++ +++ + E           L+  +        + +  
Sbjct: 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT------LEEAEALENKIEDDEEEA 970

Query: 344 KKELSSIEKTIAE 356
           ++ L  +E  I E
Sbjct: 971 RRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 46/207 (22%), Positives = 101/207 (48%), Gaps = 3/207 (1%)

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE--NEVESLEQKLDSMRKQQK 292
           LER+ K LE  Q+   E   +  +E  +LEL    +RL E   E+E L+++L    ++ +
Sbjct: 198 LERQLKSLER-QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELE 256

Query: 293 KYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEK 352
           +   +++  + +L E+R  + EL +++    K+L  +   I    ++ Q  ++ L+++E+
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

Query: 353 TIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEV 412
            + E   ++E  +++L+ +  E   ++ +     +E +  E   + L+  LE+    LE 
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376

Query: 413 KEREFEERVKEFELREKEFDSIRKAVE 439
            E + E    +    E +  S+   +E
Sbjct: 377 LEEQLETLRSKVAQLELQIASLNNEIE 403

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 54/258 (20%), Positives = 128/258 (49%), Gaps = 4/258 (1%)

Query: 214 LRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLH 273
           L +  +   E+++ L   E +LE    EL+  +  ++EL ++    EE++E L +++   
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 274 ENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSI 333
            NE+  LEQ+   +R++       +E  + +L E+   ++EL+++LA  +++L+ +++ +
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 334 EDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKE 393
           E    E +  + EL  +E  + E  +++E  ++++  ++ +   +           +  E
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 394 KHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNL--LLQFFD 451
              + L++ +E+  + LE  E E +E   E E  E+E + +++ +E   + L  L +  +
Sbjct: 414 DRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 452 TVKRARDPALLVLHAMSG 469
             ++A D A   L  +  
Sbjct: 472 EAEQALDAAERELAQLQA 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 44/252 (17%), Positives = 126/252 (50%), Gaps = 7/252 (2%)

Query: 194 AYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELS 253
           +  +R+  + +  +++ EE L + E    ++++ L   + +L   +  LE  +  ++EL 
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 254 VKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313
            +    + +L  L  ++   ++ +E LE++L+ + ++ ++  + +E  + EL  + + + 
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 314 ELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQH 373
           +L +++   +++ + +Q+ +E+  +E +  ++ L ++E+ +    +  E  + ++  ++ 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 374 ESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDS 433
           E            ++  E E+  + L+K LE+  ++LE  E E EE   E +  E+E + 
Sbjct: 836 E-------IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888

Query: 434 IRKAVEDHSKNL 445
           + + + +    L
Sbjct: 889 LEEELRELESEL 900

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 67/295 (22%), Positives = 145/295 (49%), Gaps = 28/295 (9%)

Query: 55  KSLEKQSNYVDVKIRLLDQ-RAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXI 113
           + LE+Q+   +    L  + R  E+     KL  + K++E+   EL   E+EL  +Q+ +
Sbjct: 203 EKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEEL 262

Query: 114 GECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIE 173
            E   E+   ++EL  L E L   +EEL  ++E I +    + E+ LL+  ++E  +E+E
Sbjct: 263 EEAEKEIEELKSELEELREELEELQEELLELKEEIEE---LEGEISLLRERLEELENELE 319

Query: 174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV--LC 231
             E+++ E++  IE  +++L  ++  +  ++ L+ + EE   + E+    + + L     
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379

Query: 232 ETK-------------------LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL 272
             +                   L+RE + LE     + E        +E+L+ L  ++  
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL---KEELKELEAELEE 436

Query: 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLK 327
            + E+E L ++L+ + +Q ++  D ++  +REL E+++ ++ L ++L+S + +L 
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 82/406 (20%), Positives = 179/406 (44%), Gaps = 34/406 (8%)

Query: 44  KDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKE 103
            +LEE  +  ++   +      +++  L  R +E+   E  L  +E+KIE     LE  E
Sbjct: 242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE----RLEELE 297

Query: 104 KELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKN 163
           +E+  +++ +      L   E  L  L       ++    +E+  ++ +   +E   L  
Sbjct: 298 REIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK 357

Query: 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223
           L++E   E+E R +   E+++ +E+  ++L   +  I  ++  + +    L + ++   E
Sbjct: 358 LLEERLKELEERLE---ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEE 414

Query: 224 VKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE-------------KLELLHRK- 269
           ++K L   E +LE  ++E++  +  I +L  K     E             +L   H K 
Sbjct: 415 LEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKE 474

Query: 270 -VRLHENEVESLEQKLDSMRKQQKKY--FDDVELKKRELNEIR-KYIEELSQDLASKDKQ 325
            + L+E E+E LE++L   +++ +     +++E + REL E   + +E         +++
Sbjct: 475 LLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEK 534

Query: 326 LKFVQQSIEDCSKEF-QWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIG 384
           L+ ++  +E+  +   + + ++L    + + +  +E++    +L L++            
Sbjct: 535 LEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE------- 587

Query: 385 YLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKE 430
            L+E +E+ K      K LE+R   LE   +  E    E EL E E
Sbjct: 588 -LEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAE 632

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 87/401 (21%), Positives = 182/401 (45%), Gaps = 39/401 (9%)

Query: 54  KKSLEKQSNYVDVKIRLLDQ-RAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKX 112
            K LEK+   ++ +  L ++ +AK+ E + +K        E    ELE  EK    +++ 
Sbjct: 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEE 406

Query: 113 IGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKEL--QLLKNLIKECCD 170
           I +    +     EL    + L    EEL   +    KC    +EL  +  K L++E   
Sbjct: 407 ISKITARI----GELKKEIKELKKAIEELKKAK---GKCPVCGRELTEEHRKELLEEYTA 459

Query: 171 EIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYE--EVLRDKEKSYGEVKKSL 228
           E++  EK++ E++    +  K+L   ++ +     LI+  E  E L++ E+   +     
Sbjct: 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE- 518

Query: 229 VLCETKLEREKKELELTQSSIKELSVK---FHSEEEKLELLHRKVRLHENEVESLEQKLD 285
                +LE++ +E E  +  + +L  +      E EKLE L +K+   E +++ LE++L 
Sbjct: 519 -----ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573

Query: 286 SMRKQQKKY----FDDVELKKRELNEI-RKYIEELSQDLASKDKQLKFVQQSIEDCSKEF 340
            + K+ ++      +++E + +EL     +Y+E            LK  ++ +E   KE 
Sbjct: 574 ELLKELEELGFESVEELEERLKELEPFYNEYLE------------LKDAEKELEREEKEL 621

Query: 341 QWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKE-KHFDSL 399
           +  ++EL    + +AE  K +E  + +L  ++ + +  +   +        +E     + 
Sbjct: 622 KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE 681

Query: 400 KKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVED 440
            + LE R ++++    + +E ++E E  +KE + + KA+E 
Sbjct: 682 LEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 38/188 (20%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQ 317
           SE  +L+ L  ++   + E+ SL+ +L  +  +  +   ++    R++ EI K IE+L Q
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 318 DLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNL 377
           +     ++L+ +++ +    +E +  K EL  +E  I E  +++   +  LN ++   + 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 378 VQTRTIGYLKEFKEK-----EKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFD 432
            +   I       E+     E     +++ L   + + E  E+E +E  ++    +++  
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 433 SIRKAVED 440
           SI K +E+
Sbjct: 851 SIEKEIEN 858

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 76/408 (18%), Positives = 175/408 (42%), Gaps = 31/408 (7%)

Query: 67  KIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENE 126
           ++    +R +E+E +  +L    + +     ELE   ++L  +++ + +   +L   E+E
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344

Query: 127 LNSLSESLNIKKEELSSV--------EEWINKCQAYQKELQLLKNLIKECCDEIELREKK 178
           L  L+E  N   + L           EE   + +   + L+ L+  I+E  +E+      
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404

Query: 179 VGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV------LCE 232
           + E+Q  +EE EK+L   +R +  ++  I+  EE +   E     + +         +C 
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464

Query: 233 TKL--EREKKELELTQSSIKELSVKFHSEEEKLELLH--RKVRLHENEVESLEQKLDSMR 288
            +L  E EK+ LEL +  ++EL  +   E+E+ EL     ++     E+E    +L  + 
Sbjct: 465 QELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELE 524

Query: 289 KQQKKYFDD---------VELKKRELNEIRKYIEELSQDLASKDKQLKFVQQS---IEDC 336
           +  K+  ++          EL++ +     + ++E  + L  + ++LK + +    +   
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTR 584

Query: 337 SKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRT-IGYLKEFKEKEKH 395
            +E +  ++ L  ++K + E  + +   +  L  ++      +       L+   EK   
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644

Query: 396 FDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK 443
              L++ L+   ++LE K  E E  ++    R +  + + + +E+  +
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ 692

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 96/454 (21%), Positives = 205/454 (45%), Gaps = 44/454 (9%)

Query: 8   ISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVK 67
           + EEL   E + + L    +        +       + LEE      + LE++   +  +
Sbjct: 219 LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK----IRELEERIEELKKE 274

Query: 68  IRLLDQRAKEIESKE------IKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELH 121
           I  L+++ KE++  +      IKL    ++  D   E+E +   L      I E   EL 
Sbjct: 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334

Query: 122 LKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNL----IKECCDEIELREK 177
            KE  L  L + L   ++ L  +EE     + Y++     + L     +      E  EK
Sbjct: 335 EKEERLEELKKKLKELEKRLEELEERH---ELYEEAKAKKEELERLKKRLTGLTPEKLEK 391

Query: 178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG-----------EVKK 226
           ++ E++++ EE E++++     I  ++  I++ ++ + + +K+ G           E +K
Sbjct: 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK 451

Query: 227 SLVLCET-KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE--NEVESLEQK 283
            L+   T +L+R +KEL+  +   ++L  +    E+ L+     ++L E   +++ LE+K
Sbjct: 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEK 511

Query: 284 LDSMRKQQ-KKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQW 342
           L     ++ +K  ++ E  K +L +++  I+ L ++L    ++L+ +++ + +  K+   
Sbjct: 512 LKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDE 567

Query: 343 KKKELSSIEKTIAE----CSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDS 398
            ++EL+ + K + E      +E+E +  +L    +E            KE + +EK    
Sbjct: 568 LEEELAELLKELEELGFESVEELEERLKELEPFYNEYL----ELKDAEKELEREEKELKK 623

Query: 399 LKKGLEDRSQDLEVKEREFEERVKEFELREKEFD 432
           L++ L+   ++L   E+  EE  KE E  EK++ 
Sbjct: 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYS 657

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 83/378 (21%), Positives = 172/378 (45%), Gaps = 48/378 (12%)

Query: 44   KDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKE 103
            + L+      +  L +  N +D   + L   +++I   E ++  +E++ E     LE  E
Sbjct: 684  EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743

Query: 104  KELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKN 163
            ++       +     E+   ++EL  L   +   +E+L  +EE +N  +A     +L  +
Sbjct: 744  ED-------LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA-----RLSHS 791

Query: 164  LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223
             I E   E+   E++V  ++  + E E++L         ++  I++ +E   D ++    
Sbjct: 792  RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851

Query: 224  VKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK 283
            ++K +     K E  ++ELE  ++++++L       E +L  L ++    E ++  LE+K
Sbjct: 852  IEKEIENLNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQLRELERK 904

Query: 284  LDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWK 343
            ++ +  Q       +E K++ L+E++  +E L ++L+            IED   E +  
Sbjct: 905  IEELEAQ-------IEKKRKRLSELKAKLEALEEELS-----------EIEDPKGEDEEI 946

Query: 344  KKELSSIEKTIAECSK-EVELKK----NQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDS 398
             +E  S+E   AE  + E E++     N L + ++E   V  R    L E KEK    + 
Sbjct: 947  PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEE--VLKR----LDELKEKRAKLEE 1000

Query: 399  LKKGLEDRSQDLEVKERE 416
             +K + +R ++ E K+RE
Sbjct: 1001 ERKAILERIEEYEKKKRE 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 63/300 (21%), Positives = 137/300 (45%), Gaps = 32/300 (10%)

Query: 41  VQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELE 100
            + K+L +  +  ++ L +    ++     L++  KEIE  + +L  + +++E+   EL 
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 101 CKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQ- 159
             ++E+  ++  I      L   ENEL  L E L   KE++ +++E + + +   +EL+ 
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 160 ---------------------LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQR 198
                                 L+ L +   +E+   E ++ E++  +EE ++++   + 
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 199 NISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHS 258
            +  +   +ED +E L++ E    E++  L     +LE  +++LE  +  +KEL      
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL------ 465

Query: 259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYF---DDVELKKRELNEIRKYIEEL 315
            E +L  L  +++  E E+ SLE +LD +  +Q+        +E  +  L  +   + EL
Sbjct: 466 -ERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAEL 524

Length = 1163

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 51.9 bits (125), Expect = 8e-07
 Identities = 43/212 (20%), Positives = 103/212 (48%), Gaps = 25/212 (11%)

Query: 153 AYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEE 212
            YQ+ ++ L+ LI +    IE   K + E++  ++  ++   +K  ++  ++ L+E  EE
Sbjct: 279 EYQELIEQLEELIDKYESHIE---KALEELESILDTEKENSEFK-LDVEELKALLEALEE 334

Query: 213 VLRDKEKSYGEVKKSLVLCETKLEREKKEL--ELTQSSIKELSVKFHSEEEKLELLHRKV 270
           +L                 + KLE + K+    +   SI +L    +   + +      +
Sbjct: 335 ILE-------------KNLQ-KLEEKLKDPSTSIELESITDLIESINDIIDAIN---ELI 377

Query: 271 RLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQ 330
           R H  ++++L+++ +  +K+   +   V   K +++  +K  + L + + S +K++K ++
Sbjct: 378 REHNEKIDNLKKEKNKAKKKLWLHL--VAELKEDIDAYQKEKKGLEKAINSLEKEIKQLE 435

Query: 331 QSIEDCSKEFQWKKKELSSIEKTIAECSKEVE 362
             I+   KE +  +K+L++IE T  E +K ++
Sbjct: 436 AEIKALEKEIKELEKQLTNIEPTADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 92/405 (22%), Positives = 176/405 (43%), Gaps = 22/405 (5%)

Query: 47  EEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKEL 106
            E+ +   K  EK+   V  +I  +     E+  +  KL    K++E+   E+E  EKEL
Sbjct: 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL 247

Query: 107 GLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIK 166
             ++    +    L  K  EL    E L  + EEL    + + + +   +E   L    +
Sbjct: 248 ESLEGSKRK----LEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE 303

Query: 167 ECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKK 226
           E  DE+   EK++  ++  I   E+++   +     ++ L +  +E+ +  E+     + 
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363

Query: 227 SLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDS 286
                  K E E+ +  LT  + ++L  +    E+  E +  ++      +  L++++  
Sbjct: 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423

Query: 287 MRK---QQKKYFDDVELKKRELNEIRK--YIEELSQDLASKDKQLKFVQQSIEDCSKEFQ 341
           ++K   + KK      +  REL E  +   +EE + +L   +K+LK +++      KE +
Sbjct: 424 LKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483

Query: 342 WKKKELS-----SIEKTIAECSKEVELKKNQLNLVQHESN-----LVQTRTIGYLKEFKE 391
             +K L         K +AE  KE+E K  + NL + E        ++ + I    E K 
Sbjct: 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543

Query: 392 KEKHFDSLKKGLEDRSQDLEVKEREFEERVKEF--ELREKEFDSI 434
            +K  + L + L+ +  +LE K  E EE + E   EL E  F+S+
Sbjct: 544 LKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEELGFESV 587

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 41/201 (20%), Positives = 91/201 (45%), Gaps = 20/201 (9%)

Query: 258 SEEEKLELLHRKVRL--HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 315
           S +    +L R+  +   E ++E LE+K+  + K   +   ++E  + EL ++RK +EEL
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 316 SQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHES 375
           S+ +++  K L  ++  +E   +      KEL+ +E  I E  + +E  + +  L + E+
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--EAEEELAEAEA 782

Query: 376 NLVQ---------------TRTIGYL-KEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEE 419
            + +                  +  L  E     +   +L++ LE   + +   ER  E+
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

Query: 420 RVKEFELREKEFDSIRKAVED 440
             ++ E   ++ +S+   +E+
Sbjct: 843 LEEQIEELSEDIESLAAEIEE 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 55/271 (20%), Positives = 125/271 (46%), Gaps = 9/271 (3%)

Query: 170 DEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229
           ++ E   + + EV +  + + ++L  +         L E  E++    E    E+K+   
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQ---------LSELLEDIEDLLEALEEELKELKK 217

Query: 230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRK 289
           L E + E+E++ELE    +++E   +   E+E+LE L  ++   E+      +  +   +
Sbjct: 218 LEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELR 277

Query: 290 QQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSS 349
           + ++  +++E K   L E+ + IEEL ++L      L+ +++ +E      +  +K    
Sbjct: 278 ELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEK 337

Query: 350 IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
           +EK  +E  +  E K     L++     ++ R     KE ++  +    L++ +++  ++
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEE 397

Query: 410 LEVKEREFEERVKEFELREKEFDSIRKAVED 440
           L       EE  +E E  EKE + + + +E+
Sbjct: 398 LAELSAALEEIQEELEELEKELEELERELEE 428

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 90/379 (23%), Positives = 179/379 (47%), Gaps = 38/379 (10%)

Query: 54  KKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXI 113
           K+ +E++ + +  +I  L +  KE++    +L   + K   C  EL  + ++     + +
Sbjct: 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK-----ELL 454

Query: 114 GECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIE 173
            E   EL   E EL  + E     ++EL  +E+ + K     K  +L + L +    E +
Sbjct: 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL---EEK 511

Query: 174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCET 233
           L++  + E+++  EE EK L  K   +      ++   E L + +K   E++K L   E 
Sbjct: 512 LKKYNLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570

Query: 234 KLEREKKEL-ELTQSSIKELSVKFHSEEEKLELLHRK---VRLHENEVESLEQKLDSMRK 289
           +L    KEL EL   S++EL        ++LE  + +   ++  E E+E  E++L  + +
Sbjct: 571 ELAELLKELEELGFESVEELE----ERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Query: 290 QQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSS 349
           +  K F+++   ++ L E+RK +EEL +         K+ ++  E+  +E+    +EL+ 
Sbjct: 627 ELDKAFEELAETEKRLEELRKELEELEK---------KYSEEEYEELREEYLELSRELAG 677

Query: 350 IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD 409
           +   + E  K  E  K  L  ++ E           L+E ++ +K  + L+K LE R ++
Sbjct: 678 LRAELEELEKRREEIKKTLEKLKEE-----------LEEREKAKKELEKLEKALE-RVEE 725

Query: 410 LEVKEREFEERVKEFELRE 428
           L  K ++++  +KE  L +
Sbjct: 726 LREKVKKYKALLKERALSK 744

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 48.8 bits (116), Expect = 8e-06
 Identities = 66/383 (17%), Positives = 147/383 (38%), Gaps = 28/383 (7%)

Query: 102 KEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEE------------------LSS 143
           KE+   L+++        + L+E +L  L      KK                    L  
Sbjct: 173 KERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDY 232

Query: 144 VEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSI 203
           ++    +    Q+ L+  +  I+    E+E  E+ + +V +  +E EK+   ++  +  +
Sbjct: 233 LKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL 292

Query: 204 QTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKL 263
               E+ +  L   E+   + ++ L   E +L++ +KEL+  +  I+EL       E++L
Sbjct: 293 AKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEEL-------EKEL 345

Query: 264 ELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKD 323
           + L  K    E E E LE+  + + + ++   + +  KK E   +    +   ++L  K+
Sbjct: 346 KELEIKREAEEEEEEQLEKLQEKLEQLEE---ELLAKKKLESERLSSAAKLKEEELELKN 402

Query: 324 KQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTI 383
           ++ K  +  +E   +E    K+E     K + E  + +E K+ +L   + E      + +
Sbjct: 403 EEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLL 462

Query: 384 GYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK 443
               E K+ E      K        +L +  ++ EE  ++     +    +   ++D   
Sbjct: 463 KDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVG 522

Query: 444 NLLLQFFDTVKRARDPALLVLHA 466
             ++                  A
Sbjct: 523 LRIISAAGRGGDLGVAVANYKVA 545

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 55/271 (20%), Positives = 120/271 (44%), Gaps = 31/271 (11%)

Query: 179 VGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLERE 238
           V E  R  E+  ++L   + NI  +  +I++  + L    +   + ++   L + K E E
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYE 224

Query: 239 KKEL----ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY 294
             EL    E  +   + +  +  S EE+LE L  ++   E  +E +EQ L+ + K+ K  
Sbjct: 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL 284

Query: 295 FDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
            ++      E   +++ I EL  ++AS ++ +   ++ +ED  +     + E+  +   I
Sbjct: 285 GEE------EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

Query: 355 AECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKE 414
            E  +E+E ++ + + +  E                     +  LK+ LED   +LE  +
Sbjct: 339 EELEREIEEERKRRDKLTEE---------------------YAELKEELEDLRAELEEVD 377

Query: 415 REFEERVKEFELREKEFDSIRKAVEDHSKNL 445
           +EF E   E +   ++ + +++ + +  + L
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKREL 408

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 14/191 (7%)

Query: 43  WKDLEEHFD----LTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGE 98
             +LE HFD       + LE+  +  +  I    +  + I   E +    +  +E+    
Sbjct: 269 KAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKAL 328

Query: 99  LECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWI----NKCQAY 154
           LE  E+ L    + + E   +      EL S+++ +    + + ++ E I     K    
Sbjct: 329 LEALEEILEKNLQKLEEKLKDPSTSI-ELESITDLIESINDIIDAINELIREHNEKIDNL 387

Query: 155 QKELQLLKN-----LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIED 209
           +KE    K      L+ E  ++I+  +K+   ++++I   EK++   +  I +++  I++
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447

Query: 210 YEEVLRDKEKS 220
            E+ L + E +
Sbjct: 448 LEKQLTNIEPT 458

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 71/404 (17%), Positives = 151/404 (37%), Gaps = 42/404 (10%)

Query: 75  AKEIESKEIKLVFV--EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132
            +  +  EIK VF   E+ IE    ++E  +KEL  +++ I +   E+  KE EL     
Sbjct: 72  EENFDEGEIKGVFTLGEENIEIEA-QIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKN 130

Query: 133 SLN--IKKEELSSVEEWINKC-QAYQKELQLLKNLIKECCDEI-----ELREKKVGEVQR 184
                  K+     +  +++  +    +    + L+KE    I      L  +++    +
Sbjct: 131 KFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIK 190

Query: 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLE-----REK 239
           ++    K    +   ++      ++ E+    ++   G     +      L      +E 
Sbjct: 191 TLFSSNKP---ELALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEG 247

Query: 240 KEL------------ELTQSSIKEL----SVKFHSEEEKLELLHRKVRLHENEVESLEQK 283
            E              +T+    EL      ++    E+LE L  K   H  +     + 
Sbjct: 248 LEYHEEGDTCPFCQQTITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELES 307

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQL--KFVQQSIEDCSKEFQ 341
           +    K+  ++  DVE  K  L  + + +E+  Q L  K K        +SI D  +   
Sbjct: 308 ILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESI- 366

Query: 342 WKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKK 401
                + +I + I E +++++  K + N  + +  L         ++    +K    L+K
Sbjct: 367 --NDIIDAINELIREHNEKIDNLKKEKN--KAKKKLWLHLVAELKEDIDAYQKEKKGLEK 422

Query: 402 GLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNL 445
            +    ++++  E E +   KE +  EK+  +I    ++ +K L
Sbjct: 423 AINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADEINKLL 466

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 79/399 (19%), Positives = 159/399 (39%), Gaps = 20/399 (5%)

Query: 51   DLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQ 110
            D  KK  E+     +      +  A E E+ E K    EKK E+   + +  +K+    +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

Query: 111  KXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLI-KECC 169
            K       E   K  E    ++ L          +E   K +  +K  +  K     +  
Sbjct: 1392 KAD-----EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 170  DEIELR---EKKVGEVQRSIEEREK-----QLAYKQRNISSIQTLIEDYEEVLRDKEKSY 221
            DE + +    KK  E ++  EE +K     + A + +     +   E+ ++   + +K+ 
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Query: 222  GEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE-NEVESL 280
               KK+    + +  ++  E +  + + K    K   E++K + L +   L +  E +  
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566

Query: 281  EQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEF 340
            E+   +   +        E KK E   I + ++   ++   K ++ K   ++ E   K  
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK---KAEEAKIKAE 1623

Query: 341  QWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLK 400
            + KK E    +K + +  K+   +K +   ++      + +     K+ +E +K  +  K
Sbjct: 1624 ELKKAE--EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681

Query: 401  KGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVE 439
            K  ED  +  E  ++E EE  K  EL++KE +  +KA E
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 78/432 (18%), Positives = 178/432 (41%), Gaps = 47/432 (10%)

Query: 55  KSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIG 114
           K + K++     ++        E     ++ +  E K      E++ +++E  L Q+   
Sbjct: 177 KEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEA 236

Query: 115 ECNCELHLKENELNSLSESLNIKKEELSSVEEW-INKCQAYQKELQLLKNLIKECCDEIE 173
                   +  EL    E L   K  L  +E   +   +  ++EL+ L+ L++E  ++IE
Sbjct: 237 LEE-----RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCET 233
             E+   E++   EE E   A     +  +   ++  EE L   E+   +++  L     
Sbjct: 292 RLEELEREIEELEEELEGLRA-LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 234 KLEREKKELELTQSSIKELSVKFHSE----EEKLELLHRKVRLHENEVESLEQKLDSMRK 289
           +     K LE     ++E   +   E     E+L+ L   ++  + E+  L   L+ +++
Sbjct: 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 290 QQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIED------CSKEFQ-- 341
           + ++   ++E  +REL E+ + I++L + +   + +   + +          C +E    
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 342 -------WKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTI------GYLKE 388
                    + EL  +E+ ++   +E EL++    L +    L +             +E
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 389 FKEKEKHFDSLKKGLED-----RSQDLEVKEREFEERVKEFELREKEF----------DS 433
            +EK +  ++L + LE+     + Q L+ + R+ E+R++E +   +E           + 
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590

Query: 434 IRKAVEDHSKNL 445
           +R+ +++  K L
Sbjct: 591 LRERLKELKKKL 602

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 61/337 (18%), Positives = 135/337 (40%), Gaps = 29/337 (8%)

Query: 119 ELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKK 178
           +       L  + +    K EEL    +     +  +  L+ L+  +KE     E++E++
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELE--GQLSELLEDIEDLLEALEEELKELKKLEEIQEEQ 225

Query: 179 VGEVQRS----IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK 234
             E        +EER  +L  ++  +  ++  + + E +  +  K   E  + L     +
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY 294
           LE + + LE  +  I+EL  +       LE L   +   ++  E LE+  + + K + + 
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345

Query: 295 FDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
            +  E K      + + ++EL + L   +K+L+   + ++   +  Q  K+EL+ +   +
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405

Query: 355 AECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEV-- 412
            E  +E+E  + +L  ++             L+E +E+ K  +     LE +   +    
Sbjct: 406 EEIQEELEELEKELEELE-----------RELEELEEEIKKLEEQINQLESKELMIAELA 454

Query: 413 ----------KEREFEERVKEFELREKEFDSIRKAVE 439
                     +E   E   +  EL E E + + + + 
Sbjct: 455 GAGEKCPVCGQELPEEHEKELLELYELELEELEEELS 491

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 90/413 (21%), Positives = 178/413 (43%), Gaps = 25/413 (6%)

Query: 46  LEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKE 105
           LEE     ++ LE+    ++  +  L Q  + I+  + +L  +   +E+   ELE  EKE
Sbjct: 359 LEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKE 418

Query: 106 LGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSV------------EEWINKCQA 153
           L  +++ + E   E+   E ++N L     +  E   +             E      + 
Sbjct: 419 LEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLEL 478

Query: 154 YQKELQLLKNLIKECCDEIELRE---KKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDY 210
           Y+ EL+ L+  +    +E ELRE   +   E++   EE  + L  ++     ++  +E  
Sbjct: 479 YELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKL 538

Query: 211 EEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKV 270
           E +L + E+   +++        +L+ E ++LE     +KEL  +      + E L  ++
Sbjct: 539 ENLLEELEELKEKLQLQ------QLKEELRQLEDRLQELKELLEELRLLRTRKEEL-EEL 591

Query: 271 RLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQ 330
           R    E++   ++L+    Q ++    +EL + E NE+ +  EEL  +L   + Q +  +
Sbjct: 592 RERLKELKKKLKELEERLSQLEELLQSLELSEAE-NELEEAEEELESELEKLNLQAELEE 650

Query: 331 QSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFK 390
                  +  +  ++  + I + +     E +L++    L Q E  L Q R    L+E  
Sbjct: 651 LLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLRE--ELEELL 708

Query: 391 EKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK 443
           +K    + L + LE R  +LE  ++E E+  K  EL E+  + + KA      
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLRADI 761

Length = 908

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 60/320 (18%), Positives = 137/320 (42%), Gaps = 66/320 (20%)

Query: 46  LEEHFDLTKKSLE----KQSNYVDVKIRL------LDQRAKEIESKEIKLVFVEKKIEDC 95
           LE ++D  K  ++    + SN   ++ +L      L+   K+I   E       K+IE  
Sbjct: 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIE-- 221

Query: 96  NGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQ 155
                                + E +   ++ N+L  +LN    ELSS+E+  N+ ++  
Sbjct: 222 -------------------RLSIEYNNAMDDYNNLKSALN----ELSSLEDMKNRYESEI 258

Query: 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQL----AYKQRN-ISSIQTL---I 207
           K  +   ++  E  +             + +EER  ++     YK RN I+        I
Sbjct: 259 KTAESDLSMELEKNNYY-----------KELEERHMKIINDPVYKNRNYINDYFKYKNDI 307

Query: 208 EDYEEVLRDKE---KSYGEVKKSLVLCET------KLEREKKELELTQSSIKELSVKFHS 258
           E+ +++L + +     Y  + K L + +       K +    +L      ++   + ++S
Sbjct: 308 ENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNS 367

Query: 259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQD 318
             + +E L +K+  +   +E +   +  + K Q     D +  K+ELNEI   ++++S  
Sbjct: 368 YLKSIESLKKKIEEYSKNIERMSAFISEILKIQ---EIDPDAIKKELNEINVKLQDISSK 424

Query: 319 LASKDKQLKFVQQSIEDCSK 338
           ++S +++++ +++++++ S+
Sbjct: 425 VSSLNQRIRALRENLDELSR 444

Length = 895

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 30/271 (11%)

Query: 188 EREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE---- 243
           E+E +L +++     I T I + +    +  +   E  K     +T L  + + L+    
Sbjct: 255 EQELKLGFEKFV-HIINTDIANLKTQNDNLYEKIQEAMKISQKIKT-LREKWRALKSDSN 312

Query: 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY---FDDVEL 300
             ++ +  +  K      KLE L  ++ L E E+++L+  +D + KQ +K     +  EL
Sbjct: 313 KYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL 372

Query: 301 KK-------RELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKT 353
                    REL++I    ++L++ + S+  + + + +S+E   +++    + ++     
Sbjct: 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQ 432

Query: 354 IAECSKEVELKKN--QLNLVQHESNLVQTRTIGYLK-----EFKEK-------EKHFDSL 399
           I     +  LK N  QL       N    ++I  L        K +       E+   +L
Sbjct: 433 IGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNL 492

Query: 400 KKGLEDRSQDLEVKEREFEERVKEFELREKE 430
           K  + + +Q LE  E E  E   +FEL ++E
Sbjct: 493 KHDINELTQILEKLELELSEANSKFELSKEE 523

Length = 622

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 63/288 (21%), Positives = 124/288 (43%), Gaps = 14/288 (4%)

Query: 58  EKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELG-LVQKXIGEC 116
           E+          L ++  + +E +E     +E+K+E     LE  E+    L  + + E 
Sbjct: 501 EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEE 560

Query: 117 NCELHLKENELNSLSESLNIK---KEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIE 173
             +L  +  EL  L E L +    KEEL  + E + + +   KEL+   + ++E    +E
Sbjct: 561 LRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLE 620

Query: 174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCET 233
           L E +  E++ + EE E +L          + L    EE+    E+   E+++ L   E 
Sbjct: 621 LSEAEN-ELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679

Query: 234 KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKK 293
           + + E+K  EL     ++L  +     E+LE L +K+   E  +E LE +   + + +K+
Sbjct: 680 EEQLEEKLEEL-----EQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKE 734

Query: 294 YFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQ 341
               +E  ++ L  + +  E+L +     D     + Q   + ++   
Sbjct: 735 ----LEKLEKALELLEELREKLGKAGLRADILRNLLAQIEAEANEILS 778

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 53/277 (19%), Positives = 111/277 (40%), Gaps = 33/277 (11%)

Query: 42  QWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGE--L 99
           + + LE   +  ++ L      ++     + +  K +E  E  L  + KKI+D   E  L
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290

Query: 100 ECKEK------ELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEE------- 146
             KEK      E+  +++ I E   EL   E  L  L   ++    E+  +E        
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350

Query: 147 ----WINKCQAYQKELQLLKNLI-------KECCDEIELREKKVGEVQRSIEEREKQLAY 195
                  +    ++EL+ L+  +        E  DE++   +K+ +++R I E +++L  
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410

Query: 196 KQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVK 255
            Q  +  +   + D    +   E    E+       E + E +  E++  +  +++L+  
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINEL-------EEEKEDKALEIKKQEWKLEQLAAD 463

Query: 256 FHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292
               E++L  L  +    E E+  L+++L     Q +
Sbjct: 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 3/295 (1%)

Query: 44  KDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKE 103
            +LEE   L    L+     +D+   LL    +EIES + +L   E+ +     E + +E
Sbjct: 220 LELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEE 279

Query: 104 KELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKN 163
           KE  L ++ +     E    ++EL  L       +E+L   E+ + K    +KEL+  K 
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKK---LEKELKKEKE 336

Query: 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223
            I+E   E++  E K    +   E+ EK     ++    +    +   E L    K   E
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 224 VKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK 283
             +     E + +   +  E  +  +KE   +     E+LE      +    E +   +K
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 284 LDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSK 338
                 + K      E   +E   ++   +     L  K ++    +    +   
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLA 511

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 45/252 (17%), Positives = 97/252 (38%), Gaps = 27/252 (10%)

Query: 126 ELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRS 185
           ELN   ++L++K      +++ I       +E +          + I  ++ K  E+   
Sbjct: 178 ELNQQIQTLDMKI---DHIQQQIKTYNKNIEEQRKKNG------ENIARKQNKYDELVEE 228

Query: 186 IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC--ETKLEREKKELE 243
            +  + ++      + ++   IED    L     +  ++K  +       K+  +     
Sbjct: 229 AKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP 288

Query: 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
                I E   +    ++KL+ L   +   +  ++ LE+ +D   +Q KK          
Sbjct: 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK---------- 338

Query: 304 ELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSI----EKTIAECSK 359
            L E++  I    Q L +   + K V+ +IE+   EF    +EL+ +    +K +   S 
Sbjct: 339 -LLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKS- 396

Query: 360 EVELKKNQLNLV 371
           E+  +K    +V
Sbjct: 397 ELVKEKYHRGIV 408

Length = 562

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 27/204 (13%), Positives = 85/204 (41%), Gaps = 11/204 (5%)

Query: 171 EIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230
           ++     ++G  Q      E +   ++   S +Q   ++ E V     +     +++L  
Sbjct: 82  QLRALRTELGTAQGEKRAAETE---REAARSELQKARQEREAV----RQELAAARQNLAK 134

Query: 231 CETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290
            + +L R  K+ +  Q+ +K L+ +    E + + L    +  +     L+ ++  ++ +
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Query: 291 QKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSI 350
             +    +E + + L       +  +++LA +    +   Q+I+    +   K +++++ 
Sbjct: 195 SAQ----IEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAAR 250

Query: 351 EKTIAECSKEVELKKNQLNLVQHE 374
            + I E  ++++  +     ++ E
Sbjct: 251 AEQIRERERQLQRLETAQARLEQE 274

Length = 499

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 77/449 (17%), Positives = 186/449 (41%), Gaps = 28/449 (6%)

Query: 34   NSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIE 93
            + + L   + K  E      +K  ++       +  ++D + KEI     KL  V + I+
Sbjct: 702  SKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQ 761

Query: 94   DCNGELECKEKELGLV---QKXIGECNCEL--------HLKENELNSLSESLNIKKEELS 142
                ++E +E  LG +   ++    C  ++         LK+ E     ++  ++  +L 
Sbjct: 762  RLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821

Query: 143  -SVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNIS 201
             +V++   + Q  Q EL  + + I+     I+ +++++  ++    E + +      N+ 
Sbjct: 822  RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881

Query: 202  SIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE 261
              Q   E   E+  + +    E+K +           +K+ +  +  I          ++
Sbjct: 882  RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQD 941

Query: 262  KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLAS 321
            K+  +  KV+     ++ +E K+   +    K       K+ ELN +   +EE  +    
Sbjct: 942  KVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ------KETELNTVNAQLEECEKHQEK 995

Query: 322  KDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTR 381
             ++ ++ ++Q I+    + +W +  L+  +       +E ELK+ +  L QH   + Q +
Sbjct: 996  INEDMRLMRQDIDTQKIQERWLQDNLTLRK-------RENELKEVEEELKQHLKEMGQMQ 1048

Query: 382  TIGYLKEFKEKEKHFDSLKKG---LEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAV 438
             +   +E ++ E++ D +K+       R +  E + + F++ ++E + R+ E       +
Sbjct: 1049 VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMI 1108

Query: 439  EDHSKNLLLQFFDTVKRARDPALLVLHAM 467
               +  L+ +  D   +  D A++  H+M
Sbjct: 1109 VMRTTELVNKDLDIYYKTLDQAIMKFHSM 1137

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 32/170 (18%), Positives = 81/170 (47%), Gaps = 4/170 (2%)

Query: 232 ETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQ 291
           E +++  +K L+  ++ ++ L+    + E +LE L  +V   E+E++ + +++    ++ 
Sbjct: 23  EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82

Query: 292 KKYFDDVELKK--RELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSS 349
               D+ EL+    E+   ++ I  L  +LA   ++++ +++ IED  +  +  +K L+ 
Sbjct: 83  SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142

Query: 350 IEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSL 399
            E  + E  +  E+++    L      L +      L E++   K+   +
Sbjct: 143 AEARLEE--EVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGV 190

Length = 239

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 77/368 (20%), Positives = 144/368 (39%), Gaps = 89/368 (24%)

Query: 71  LDQRAKEIESKEIKLVFVEKKIEDCNGELE---------CKEKELGLVQKXIGEC----- 116
           +++  KE++  E K+  +E +IE    ELE           +K        + E      
Sbjct: 97  IEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLN 156

Query: 117 ----NCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLK--NLIKECCD 170
                 E  LKE +   L+ S  +  EEL +  +       +      L    L     D
Sbjct: 157 YKKNFKEKLLKELKSVILNASSLLSLEELKAKIK-----TLFSSNKPELALLTLSVIDFD 211

Query: 171 EIE----LREKKVGEVQRSIEE----------------------------------REKQ 192
           EIE    L +  +G     I E                                  R+ +
Sbjct: 212 EIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTITEERKAE 271

Query: 193 L------AYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC----ETKLERE--KK 240
           L       Y++  I  ++ LI+ YE      EK+  E++  L       E KL+ E  K 
Sbjct: 272 LEAHFDEEYQEL-IEQLEELIDKYE---SHIEKALEELESILDTEKENSEFKLDVEELKA 327

Query: 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE--NEVESLEQKLDSMRKQQKKYFDDV 298
            LE  +  +++   K    EEKL+     + L    + +ES+   +D++ +  +++ + +
Sbjct: 328 LLEALEEILEKNLQKL---EEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKI 384

Query: 299 ELKKRELNEIRK-----YIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKT 353
           +  K+E N+ +K      + EL +D+ +  K+ K ++++I    KE +  + E+ ++EK 
Sbjct: 385 DNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKE 444

Query: 354 IAECSKEV 361
           I E  K++
Sbjct: 445 IKELEKQL 452

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 71/394 (18%), Positives = 144/394 (36%), Gaps = 26/394 (6%)

Query: 65   DVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKE 124
            D ++  L + AK  ES   K V +E+ + + +        EL        E   +   + 
Sbjct: 632  DTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKA-SLSELTKELLAEQELQEKAESEL 690

Query: 125  NELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQR 184
             +   L     IKK+E    EE         ++ +LL + ++E  D+I    K + +  +
Sbjct: 691  AKNEILRRQEEIKKKEQRIKEELKKL---KLEKEELLADKVQEAQDKINEELKLLEQKIK 747

Query: 185  SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELEL 244
              EE E++   K+      ++ +   E+ L ++E+   ++K      E    +E++   L
Sbjct: 748  EKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRAL 807

Query: 245  TQSSIKELSVKFHSEEEKLELLHRKVR-LHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
             +   +E  +    +    +    K   L E  +E  E++      +++    + E+ K 
Sbjct: 808  EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 867

Query: 304  ELNEIRKYIEELSQDLASKDK--QLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEV 361
            EL +     EE  ++   KD+    +  ++  +   +E   K   L   E  I E   E 
Sbjct: 868  ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEE 927

Query: 362  ELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHF-------------------DSLKKG 402
             +   +      E  L +       ++ KE+E+                        ++ 
Sbjct: 928  AIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEK 987

Query: 403  LEDRSQDLEVKEREFEERVKEFELREKEFDSIRK 436
             E  ++D   KER  EE+ +      +E     K
Sbjct: 988  EERYNKDELKKERLEEEKKELLREIIEETCQRFK 1021

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 23/155 (14%)

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK-LDSMRKQQKK 293
            +   KELEL  S   +L  +  + EE+L  L    +  E+E+E  +   LD  +++ KK
Sbjct: 160 YKLLMKELELLNSIKPKLRDRKDALEEELRQL----KQLEDELEDCDPTELDRAKEKLKK 215

Query: 294 YFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKT 353
              ++ +K ++L E+ + ++EL   +     +   +   I              +  EK 
Sbjct: 216 LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI--------------AEAEKK 261

Query: 354 IAEC----SKEVELKKNQLNLVQHESNLVQTRTIG 384
           + +C     KE+E  K QL L+Q  +    T+  G
Sbjct: 262 LEQCRGFTFKEIEKLKEQLKLLQSLTGWKITKLSG 296

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 132 ESLNIKKE-ELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEERE 190
           E+  +KKE  L + EE        ++EL+               R  ++  ++R + +RE
Sbjct: 44  EAETLKKEALLEAKEEVHKLRAELERELKE--------------RRNELQRLERRLLQRE 89

Query: 191 KQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE----LTQ 246
           + L  K  ++   +  +E  E+ L +KEK+  E ++ L   E  +  +++ELE    LTQ
Sbjct: 90  ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL---EELIAEQREELERISGLTQ 146

Query: 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVE 278
              KE+ ++   EE + E     ++  E E +
Sbjct: 147 EEAKEILLEEVEEEARHEAAKL-IKEIEEEAK 177

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 27/213 (12%)

Query: 119 ELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKK 178
           EL+L+  E     E L  +++ LS+ E+     +A Q  L+LL              E  
Sbjct: 199 ELNLQPGED----EELEEERKRLSNSEKL---AEAIQNALELLSG------------EDD 239

Query: 179 VGEVQRSIEEREKQLAYKQRN---ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKL 235
                  +    + L         +S +  L+E+    L +  +        L     +L
Sbjct: 240 TVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRL 299

Query: 236 EREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYF 295
           E    E+E    ++K L+ K+    E L     K++    ++++ E+ L+++ K+ KK  
Sbjct: 300 E----EVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLK 355

Query: 296 DDVELKKRELNEIR-KYIEELSQDLASKDKQLK 327
            ++      L+ IR K  +EL +++ ++ K L 
Sbjct: 356 AELLEAAEALSAIRKKAAKELEKEVTAELKALA 388

Length = 557

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 51/274 (18%)

Query: 202 SIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE 261
            +   +   +E  R +EK            E   E E++E+ + +  IK+L       EE
Sbjct: 389 PLAEALSKVKEEERPREK------------EGTEEEERREITVYEKRIKKLEETVERLEE 436

Query: 262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLAS 321
           +   L R++   + E+E LE +L+  R++      D   K RE+    + IE L ++L  
Sbjct: 437 ENSELKRELEELKREIEKLESELERFRRE----VRDKVRKDREIRARDRRIERLEKELEE 492

Query: 322 KDKQLKFVQQSIEDCSK----EFQWKKKELSSIEK----TIAECSKEVELKKNQLNLVQH 373
           K K+++ +++ + +  K    E   K   +  +EK     I E  +E  +K+  + LV+ 
Sbjct: 493 KKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVED 552

Query: 374 ESNLVQTRTIGYLKEFKEK-----EKHFDSLKKGLEDR-------------------SQD 409
            S     RT   L + K +     E+   +  +                          D
Sbjct: 553 PSG-GGARTAEELIDKKPRAIIRGEEMSHAAAEEFFKNEIPVLPEGDVQIIRLDEFAVVD 611

Query: 410 LEVKEREFEERVKEFELREK--EFDSIRKAVEDH 441
            E   R  EE  K FE RE+  + + I + +E++
Sbjct: 612 SEELRRAIEEWKKRFEERERRQKEEDILRIIEEY 645

Length = 652

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 51/286 (17%), Positives = 110/286 (38%), Gaps = 29/286 (10%)

Query: 157 ELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRD 216
           +L++ +         +      +  V+             +  +  ++  ++  EEV++ 
Sbjct: 48  KLKVAEVAQISLSSLLSEVLDYLRSVKGLEGR---LFILPEE-VEKLEAELKSLEEVIKP 103

Query: 217 KEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRK----VRL 272
            EK   EV++     E +L    +ELE  +  ++EL    + + + L LL       VRL
Sbjct: 104 AEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFD-LSLLRGLKFLLVRL 162

Query: 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELN--------EIRKYIEELSQDLAS--- 321
                E LE  +  +  +   Y ++VE     +         ++ K + EL  +L     
Sbjct: 163 GLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPE 222

Query: 322 ----KDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEV-ELKKNQLNLVQHESN 376
                 + +  +++ I +   E +  + EL ++ + IAE    V E+ + +  L    S 
Sbjct: 223 FDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSK 282

Query: 377 LVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQD---LEVKEREFEE 419
           L +T     ++ +       + LKK +   +      EV E + ++
Sbjct: 283 LARTEYTLAIEGWVP-ADEVEKLKKIINRATGGAAYFEVSETDEDK 327

Length = 660

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	624
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.87
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.75
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.61
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.44
PRK02224	880	chromosome segregation protein; Provisional	99.37
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.23
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.16
PRK03918	880	chromosome segregation protein; Provisional	99.13
PRK01156	895	chromosome segregation protein; Provisional	99.13
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.13
PRK04863	1486	mukB cell division protein MukB; Provisional	99.11
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.05
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.87
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.86
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.84
PRK01156	895	chromosome segregation protein; Provisional	98.8
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.78
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.73
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.7
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.62
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.38
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.36
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.33
PHA02562	562	46 endonuclease subunit; Provisional	98.3
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.27
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.24
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.2
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.06
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.06
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.99
PHA02562	562	46 endonuclease subunit; Provisional	97.92
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.91
PRK04778	569	septation ring formation regulator EzrA; Provision	97.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.84
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.82
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.81
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.78
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.74
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.71
PRK04778	569	septation ring formation regulator EzrA; Provision	97.69
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.68
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.67
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.66
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.65
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.63
PRK11637	428	AmiB activator; Provisional	97.61
PRK11637	428	AmiB activator; Provisional	97.6
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.56
PRK04863	1486	mukB cell division protein MukB; Provisional	97.55
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.55
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.55
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.5
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.43
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.38
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.36
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.33
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.27
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.25
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.23
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.23
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.21
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.2
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.18
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.14
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.13
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.08
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.03
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.97
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.96
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.96
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.93
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.84
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.81
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.81
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.65
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.62
PRK09039	343	hypothetical protein; Validated	96.62
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.6
COG4372	499	Uncharacterized protein conserved in bacteria with	96.6
COG4372	499	Uncharacterized protein conserved in bacteria with	96.53
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.45
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.45
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.39
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.3
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.28
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.16
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.16
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	96.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.14
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.13
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.05
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.95
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.77
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.67
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.5
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.43
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.41
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.37
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.35
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.15
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.11
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.08
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.06
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.99
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.83
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.79
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.53
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.5
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.49
PRK10869	553	recombination and repair protein; Provisional	94.45
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.28
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	94.27
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.24
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.23
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.11
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.85
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.74
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	93.7
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.63
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.49
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.38
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	93.19
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.13
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.03
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.0
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.94
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.9
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.64
PRK10869	553	recombination and repair protein; Provisional	92.5
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.45
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.29
PRK11281	1113	hypothetical protein; Provisional	92.28
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.24
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.95
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	91.84
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.7
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	91.25
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	90.97
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.82
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.56
PRK12704	520	phosphodiesterase; Provisional	90.46
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.12
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.09
PRK00106	535	hypothetical protein; Provisional	89.6
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	89.0
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.8
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	88.7
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.18
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	87.09
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.09
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	87.0
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	86.84
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.79
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	85.99
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	85.39
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	85.28
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	85.23
COG2433	652	Uncharacterized conserved protein [Function unknow	85.1
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.73
COG2433	652	Uncharacterized conserved protein [Function unknow	84.33
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.97
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.93
COG4477	570	EzrA Negative regulator of septation ring formatio	83.83
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	83.71
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.28
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.67
PRK12705	508	hypothetical protein; Provisional	81.67
PRK10246	1047	exonuclease subunit SbcC; Provisional	81.39
PRK11281	1113	hypothetical protein; Provisional	80.76
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	80.73
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.34

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=9e-61  Score=493.34  Aligned_cols=196  Identities=38%  Similarity=0.607  Sum_probs=184.5

Q ss_pred             hhHHHHHHHHHH---------HHHhhH---hhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchhhHhHHHHHH
Q 041911          426 LREKEFDSIRKA---------VEDHSK---NLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCIL  493 (624)
Q Consensus       426 ~~~~q~~~~~~~---------~~~~~~---~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cil  493 (624)
                      ....++..+|..         +.+|.+   ++|.++|+||++|||||+||||||+|||+++++. ++++++.++||+||+
T Consensus        10 ~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cil   88 (290)
T PF07899_consen   10 KPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACIL   88 (290)
T ss_pred             chHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHH
Confidence            456788999987         333333   5999999999999999999999999999999866 677788999999999


Q ss_pred             HHHhhhhcCCCCCHhHHHHHHHHHHHHHHhh-hhhccChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchHHHH
Q 041911          494 LLEQLSTVAPEINAQVRDEAMKVAGEWKKKM-RVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFC  572 (624)
Q Consensus       494 LLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~-~~~~~~~~ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~~L~  572 (624)
                      |||+|+.++|.++|+|+++|+++|.+||++| +.+++++++|||||||||+|||+|+||.|||++||.+|++|+|||+||
T Consensus        89 LLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~  168 (290)
T PF07899_consen   89 LLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELC  168 (290)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHH
Confidence            9999999999999999999999999999999 777889999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCCCCCcccchhhhhCC
Q 041911          573 QTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGM  622 (624)
Q Consensus       573 ~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~f~p~~llk~y~~~~  622 (624)
                      ++|||++||||||+ ||++|+||+||+|||+|||+|+|||||||++||+++
T Consensus       169 ~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~  219 (290)
T PF07899_consen  169 RSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDS  219 (290)
T ss_pred             HHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999999975

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=8.5e-19  Score=197.53  Aligned_cols=304  Identities=13%  Similarity=0.229  Sum_probs=268.9

Q ss_pred             hhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHH----------H
Q 041911           14 VAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK----QSNYVDVKIRLLDQRAKEI----------E   79 (624)
Q Consensus        14 ~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r----l~~Eie~kl~~L~~qa~~~----------e   79 (624)
                      +.--||.+++    .|+||||||+||+.+|+.|.++|++++.+|.+    +-.||.|.+.+||.+-..+          +
T Consensus       153 VLNMKp~EIL----sMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle  228 (1174)
T KOG0933|consen  153 VLNMKPSEIL----SMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLE  228 (1174)
T ss_pred             hhcCCcHHHH----HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446888888    99999999999999999999999999999999    8899999999999984433          3


Q ss_pred             HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH----HHHHHHHHHH-HHHHHH
Q 041911           80 SKEI-----KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES----LNIKKEELSS-VEEWIN  149 (624)
Q Consensus        80 ~~~~-----e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~----l~~k~~eL~e-l~e~~~  149 (624)
                      ++.+     +|.........+...+......+..+.........++..++.++..+...    +++....|+. +....+
T Consensus       229 ~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~  308 (1174)
T KOG0933|consen  229 RLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQN  308 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence            3322     45566667778889999999999999999999999999999999998775    4444456666 666677


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          150 KCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV  229 (624)
Q Consensus       150 eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~  229 (624)
                      ...+..+.+..+...|....++++.+.+.+.+....+..+++.+......+...+....+....++..++.++++.+|++
T Consensus       309 ~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~S  388 (1174)
T KOG0933|consen  309 EITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLS  388 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR  309 (624)
Q Consensus       230 ~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~  309 (624)
                      +.+       .+-.+|++|+..++..+..+.+++.+..++++|+.++++..++++.++..++..-.++++..+.+++.+.
T Consensus       389 s~~-------~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~  461 (1174)
T KOG0933|consen  389 SNE-------DEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLK  461 (1174)
T ss_pred             cCc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            974       3788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH------HHHhhhhhHHhhhHH
Q 041911          310 KYIE------ELSQDLASKDKQLKF  328 (624)
Q Consensus       310 kele------~~~~el~sk~~~~~~  328 (624)
                      +.+.      .+.+.|.-+..++.+
T Consensus       462 ~~l~~l~~~~~~~e~l~q~~~~l~~  486 (1174)
T KOG0933|consen  462 KRLQSLGYKIGQEEALKQRRAKLHE  486 (1174)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHH
Confidence            9986      566777666666643

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.75  E-value=4.7e-14  Score=172.53  Aligned_cols=117  Identities=22%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             hhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---H--
Q 041911           13 RVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---K--   84 (624)
Q Consensus        13 ~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e--   84 (624)
                      .++..||+++|    .||||||||++|+.|+.+|+.+|+.|+.|+++   ++.||++++++|+.|+..+.+|..   +  
T Consensus       148 ~i~~~kp~err----~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~  223 (1163)
T COG1196         148 EIINAKPEERR----KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR  223 (1163)
T ss_pred             HHHcCCHHHHH----HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999    79999999999999999999999999999999   999999999999999999988733   2  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911           85 ---LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES  133 (624)
Q Consensus        85 ---~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~  133 (624)
                         +..+...+..+...+......+..+...+..+...+.....++..++..
T Consensus       224 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  275 (1163)
T COG1196         224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE  275 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2233333334444444444444444433333333333333333333333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.61  E-value=5.1e-11  Score=146.29  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             hhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH-HHHHH
Q 041911           13 RVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI-KLVFV   88 (624)
Q Consensus        13 ~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~-e~~~~   88 (624)
                      .++..+|...|    .+|+++|||..|..+..+|...|..+..++.+   .+.++.+++++|+++...++++.. +....
T Consensus       146 ~~~~~~~~~r~----~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~  221 (1164)
T TIGR02169       146 DFISMSPVERR----KIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR  221 (1164)
T ss_pred             HHHCCCHHHHH----HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788877    88999999999999999999999999999988   778888888888877666555422 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911           89 EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL  134 (624)
Q Consensus        89 ~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l  134 (624)
                      ...+......+......+..+...+..+..++..+..++..+...+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~  267 (1164)
T TIGR02169       222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL  267 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223333333444444444444444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.44  E-value=4.9e-09  Score=128.75  Aligned_cols=253  Identities=22%  Similarity=0.276  Sum_probs=122.2

Q ss_pred             ccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHH-----
Q 041911           16 ESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEI---KLVF-----   87 (624)
Q Consensus        16 ~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~---e~~~-----   87 (624)
                      ..+|..++    .+|++++|+..|..++..+...|..+..    ++.+++.++.+|+.|+..+++|..   +|..     
T Consensus       151 ~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~nL~r~~d----~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l  222 (1179)
T TIGR02168       151 EAKPEERR----AIFEEAAGISKYKERRKETERKLERTRE----NLDRLEDILNELERQLKSLERQAEKAERYKELKAEL  222 (1179)
T ss_pred             cCCHHHHH----HHHHHHccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44787777    9999999999999877666655544433    667888999999999888877633   2222     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 041911           88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVE----EWINKCQAYQKELQLLKN  163 (624)
Q Consensus        88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~----e~~~eL~~~~~~l~~~~~  163 (624)
                      ....+..+...+......+..+...+..+..++..+..++..+...+......+..+.    .....+......+.....
T Consensus       223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~  302 (1179)
T TIGR02168       223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ  302 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2223334445555555555555555555555555555555555544433333332221    111222233333333333


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHH
Q 041911          164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE  243 (624)
Q Consensus       164 ~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~  243 (624)
                      .+......+..+...+..+...+......+..+...+..+...+......+......+......+......+.....+..
T Consensus       303 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  382 (1179)
T TIGR02168       303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE  382 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333223333333333


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 041911          244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENE  276 (624)
Q Consensus       244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~eke  276 (624)
                      .+..++..+...+..+...+..+...+..+..+
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  415 (1179)
T TIGR02168       383 TLRSKVAQLELQIASLNNEIERLEARLERLEDR  415 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.37  E-value=6.7e-07  Score=107.44  Aligned_cols=52  Identities=4%  Similarity=-0.089  Sum_probs=28.8

Q ss_pred             hccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911           15 AESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQR   74 (624)
Q Consensus        15 ~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~q   74 (624)
                      ...+|...+    .||+++.||..|+.-+.    .+..+...+.++...+..++..++.+
T Consensus       144 l~~~p~~R~----~ii~~l~~l~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (880)
T PRK02224        144 INATPSDRQ----DMIDDLLQLGKLEEYRE----RASDARLGVERVLSDQRGSLDQLKAQ  195 (880)
T ss_pred             HcCCHHHHH----HHHHHHhCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666    88889999988865333    33333333343334444444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.23  E-value=4.8e-07  Score=111.39  Aligned_cols=97  Identities=18%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhH
Q 041911           47 EEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCEL  120 (624)
Q Consensus        47 ~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Ei  120 (624)
                      ...+..+..+|.+   .+.++..++.+|+.|+..++++..   +|..+...+  ....+......+..+...+..+..++
T Consensus       169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l  246 (1164)
T TIGR02169       169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK--REYEGYELLKEKEALERQKEAIERQL  246 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888988   999999999999999999887754   344333333  23344455556666666677777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          121 HLKENELNSLSESLNIKKEELSSVE  145 (624)
Q Consensus       121 e~le~el~~le~~l~~k~~eL~el~  145 (624)
                      ..+..++..+...+......+....
T Consensus       247 ~~~~~~~~~l~~~l~~~~~~~~~~~  271 (1164)
T TIGR02169       247 ASLEEELEKLTEEISELEKRLEEIE  271 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776666655544444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.16  E-value=2e-05  Score=98.48  Aligned_cols=150  Identities=18%  Similarity=0.262  Sum_probs=77.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHH
Q 041911          159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLERE  238 (624)
Q Consensus       159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~  238 (624)
                      ..+.+.+.....+...+.+....++..+++.+..+...+............+..++....+.+..+...+......+...
T Consensus       995 ~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen  995 RELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKK 1074 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEI  308 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~  308 (624)
                      ..++..+..++.+....+..+...+.++...|..+..+++.......++++....+..+++....+++..
T Consensus      1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555666666666665555555544

>PRK03918 chromosome segregation protein; Provisional

Probab=99.13  E-value=6.3e-05  Score=90.54  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             chHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHH
Q 041911           18 KKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQR   74 (624)
Q Consensus        18 k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~q   74 (624)
                      .|...+    .+|+++.|+..|+.-+..+..........+..      -+.++..++..++.+
T Consensus       143 ~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~  201 (880)
T PRK03918        143 SDESRE----KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKE  201 (880)
T ss_pred             CcHHHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            354444    78999999999999888887777776666666      234455555555544

>PRK01156 chromosome segregation protein; Provisional

Probab=99.13  E-value=5.7e-05  Score=91.18  Aligned_cols=42  Identities=5%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             hhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           14 VAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        14 ~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      ++...|...+    .+|+++.||..|..-++.+...+...+..+..
T Consensus       143 l~~~~~~~r~----~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~  184 (895)
T PRK01156        143 LISGDPAQRK----KILDEILEINSLERNYDKLKDVIDMLRAEISN  184 (895)
T ss_pred             HHhCCHHHHH----HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777777    77888889999998777777666666665444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=1.2e-06  Score=100.47  Aligned_cols=193  Identities=18%  Similarity=0.241  Sum_probs=108.7

Q ss_pred             HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 041911           28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI--------KLVFVEKKIEDCN   96 (624)
Q Consensus        28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~--------e~~~~~~~lee~~   96 (624)
                      .|..|.|||+-|+.|+++.++.|+.|.++=..   ++..|+.+|..|+.+-++++.|.+        +|..+...+.+..
T Consensus       157 ~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~  236 (1200)
T KOG0964|consen  157 ELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEIN  236 (1200)
T ss_pred             HHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHH
Confidence            68899999999999999999999999987776   999999999999999888887732        4666666677777


Q ss_pred             HHHHHHHHHHHHHHcH-------hhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHH
Q 041911           97 GELECKEKELGLVQKX-------IGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKEL----QLLKNLI  165 (624)
Q Consensus        97 ~~Le~~e~~l~~l~~~-------I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l----~~~~~~i  165 (624)
                      ..+..+.......-..       +.....++..+..++..++..+..+..+.+.+......+....+.+    ..+..+|
T Consensus       237 ~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i  316 (1200)
T KOG0964|consen  237 GELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQI  316 (1200)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence            7766666654433333       3333333333333333333333333232222222222222222222    2222222


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 041911          166 KECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKS  220 (624)
Q Consensus       166 eE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~  220 (624)
                      .--..........++.+...|.++..++....-.+..+..+-......|..++..
T Consensus       317 ~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~  371 (1200)
T KOG0964|consen  317 TGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK  371 (1200)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            2222233333334444555555555555555555554444444444444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=99.11  E-value=2e-06  Score=106.63  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 041911           28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---KLVFVEKKIEDCNGELEC  101 (624)
Q Consensus        28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e~~~~~~~lee~~~~Le~  101 (624)
                      .|||||||++   .+|.+|.++|..++.|+.+   ++.||.+++.+|+.++..+..+..   ++......+..+...+..
T Consensus       283 ~liEEAag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeE  359 (1486)
T PRK04863        283 VHLEEALELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE  359 (1486)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998855   9999999999999999999   899999999999999888877633   222333444444444444


Q ss_pred             HHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911          102 KEKELGLVQKXIGECNCELHLKENELNSLSESL  134 (624)
Q Consensus       102 ~e~~l~~l~~~I~ele~Eie~le~el~~le~~l  134 (624)
                      +...+......+.++...+..+..++..++..+
T Consensus       360 Lee~Lee~eeeLeeleeeleeleeEleelEeeL  392 (1486)
T PRK04863        360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEV  392 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444433

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.05  E-value=0.00019  Score=90.03  Aligned_cols=102  Identities=22%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHH-----------H-------HHHHHHHHHHHHHHHHHHH
Q 041911           42 QWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIES-----------K-------EIKLVFVEKKIEDCNGELE  100 (624)
Q Consensus        42 rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~-----------~-------~~e~~~~~~~lee~~~~Le  100 (624)
                      .+......|+.++..+++   ...++++...+|..+...+..           +       ..++.....+++.....+.
T Consensus      1014 ~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~ 1093 (1930)
T KOG0161|consen 1014 AKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVA 1093 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333344444444444444   666666666666665311110           0       0122233334444444444


Q ss_pred             HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 041911          101 CKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS  143 (624)
Q Consensus       101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e  143 (624)
                      .+...+..+...|.++..+++.-+...+.++.....+..++.+
T Consensus      1094 ~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1094 QLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444333333333

>TIGR00606 rad50 rad50

Probab=98.87  E-value=0.00042  Score=86.87  Aligned_cols=25  Identities=12%  Similarity=0.031  Sum_probs=15.7

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           35 SVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        35 GI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      ++.-|...-..+...++....++..
T Consensus       633 ~~~~~~~~L~~~~~~l~~~~~~~~~  657 (1311)
T TIGR00606       633 GSQDEESDLERLKEEIEKSSKQRAM  657 (1311)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666655443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.86  E-value=4.5e-06  Score=85.03  Aligned_cols=36  Identities=14%  Similarity=0.361  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041911          285 DSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLA  320 (624)
Q Consensus       285 ~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~  320 (624)
                      ...+.++..+..+|...+..+..++.+|+..+.+|.
T Consensus       200 ~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~  235 (237)
T PF00261_consen  200 KKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333344444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR00606 rad50 rad50

Probab=98.84  E-value=0.0015  Score=82.11  Aligned_cols=31  Identities=10%  Similarity=0.125  Sum_probs=16.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 041911          360 EVELKKNQLNLVQHESNLVQTRTIGYLKEFK  390 (624)
Q Consensus       360 e~e~k~~~~~~~~~~~~~~~~~~~~~~k~~~  390 (624)
                      .+...-..+......+.+......|.++.++
T Consensus      1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606      1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555556665544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=98.80  E-value=0.0013  Score=79.40  Aligned_cols=18  Identities=11%  Similarity=0.265  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 041911          201 SSIQTLIEDYEEVLRDKE  218 (624)
Q Consensus       201 e~l~~eieel~eele~kE  218 (624)
                      ..+...+..+...+....
T Consensus       419 ~~l~~~i~~l~~~i~~l~  436 (895)
T PRK01156        419 QDISSKVSSLNQRIRALR  436 (895)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.78  E-value=0.00043  Score=85.77  Aligned_cols=63  Identities=24%  Similarity=0.396  Sum_probs=24.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR  309 (624)
Q Consensus       247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~  309 (624)
                      .++..+...+...+..++.+...+..+..+.......+...+.+...+.+++......+..+.
T Consensus       842 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.78  E-value=1.2e-05  Score=81.94  Aligned_cols=57  Identities=25%  Similarity=0.483  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE  299 (624)
Q Consensus       243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle  299 (624)
                      ..|+.++..+..+|..+++..+.....+..++.++...+.+|...+..+..+..+|+
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.73  E-value=0.00044  Score=80.37  Aligned_cols=245  Identities=15%  Similarity=0.195  Sum_probs=124.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHH
Q 041911           60 QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKE  139 (624)
Q Consensus        60 l~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~  139 (624)
                      -+..++.+|..|+.++.++..+..+|......+.-+..+++.-.-.  .+.+.+..+..++...+.++......+.....
T Consensus       692 el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~--~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~  769 (1174)
T KOG0933|consen  692 ELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFH--KLLDDLKELLEEVEESEQQIKEKERALKKCED  769 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777777777777666555554444444444333322211  22233333333333333333333222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041911          140 ELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEK  219 (624)
Q Consensus       140 eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe  219 (624)
                      ++..++....+      --..-...+.++.+++.....+.++-....+..+..+..++.+.+.++..+......+...+.
T Consensus       770 ~i~~lE~~~~d------~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~  843 (1174)
T KOG0933|consen  770 KISTLEKKMKD------AKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK  843 (1174)
T ss_pred             HHHHHHHHHhH------hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221111110      111233344444444444444555555555555556666666666666666666666666666


Q ss_pred             hHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          220 SYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE  299 (624)
Q Consensus       220 ~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle  299 (624)
                      .+..+...+......+.....+......++++....+....+++.......+-+..+...-+-+.+....++..+..+-.
T Consensus       844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~  923 (1174)
T KOG0933|consen  844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA  923 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH
Confidence            66666666666666666666666666666666666666666666666555555555555545455555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 041911          300 LKKRELNEIRKYI  312 (624)
Q Consensus       300 ~k~~ele~~~kel  312 (624)
                      ..++.++.+.++.
T Consensus       924 ~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  924 NARKEVEKLLKKH  936 (1174)
T ss_pred             HHHHHHHHHHHhc
Confidence            5555555544443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=0.00033  Score=82.55  Aligned_cols=130  Identities=21%  Similarity=0.281  Sum_probs=74.6

Q ss_pred             HHhhHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHhhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchh
Q 041911          405 DRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDV  484 (624)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~  484 (624)
                      +.+.++..+...+..||-+++.--...+...+.+..-++---.||.++|..=+---+-+...|-.       .|+.+.  
T Consensus      1096 ~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~-------GGdAeL-- 1166 (1293)
T KOG0996|consen 1096 GVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITL-------GGDAEL-- 1166 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccee--
Confidence            46777888888888888887777766666666655555545567888777655554544444431       122221  


Q ss_pred             hHhHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHHHHHHhhhhhc-cChHHHHHHHHHHHHhcCCCCCChHHH
Q 041911          485 SIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAV-ENSLEVLGFLHLLAAYRLAPAFDGEEL  555 (624)
Q Consensus       485 ~~~r~~cilLLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~~~~~-~~~~ea~~fL~lla~ygl~s~fd~~el  555 (624)
                              =|+.+|.+.+-.|..+|+    ---..||.--.-.| +..|-.+||.--|--|-=-+-|==|||
T Consensus      1167 --------ElVDslDPFseGV~FSVr----PpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEI 1226 (1293)
T KOG0996|consen 1167 --------ELVDSLDPFSEGVMFSVR----PPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 1226 (1293)
T ss_pred             --------EeeccCCCcccCceEEee----CchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhH
Confidence                    122234333222332322    11247996544444 467888888777777776666644554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=0.0025  Score=75.43  Aligned_cols=51  Identities=8%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q 041911           28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEI   78 (624)
Q Consensus        28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~   78 (624)
                      ..+|+.-||.+|..--++..+.+.........   .+.=.++....|+.--..+
T Consensus       254 EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~a  307 (1293)
T KOG0996|consen  254 EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEA  307 (1293)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            78899999999999999888888876666555   4444444555555543343

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.38  E-value=0.0016  Score=76.83  Aligned_cols=224  Identities=18%  Similarity=0.279  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHH
Q 041911           85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES------LNIKKEELSS--VEEWINKCQAYQK  156 (624)
Q Consensus        85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~------l~~k~~eL~e--l~e~~~eL~~~~~  156 (624)
                      +..+...+..+...+......+......|..+.+.+...+..+..++.-      +..+...+..  +.....++.....
T Consensus       209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~  288 (1074)
T KOG0250|consen  209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEE  288 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666666666666666666666666666666654432      2223333333  3344445555555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhH
Q 041911          157 ELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLE  236 (624)
Q Consensus       157 ~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie  236 (624)
                      .+......++++..+++.....+.++...+.+.++++..+..+...-..+++...+.+..+..........+......|.
T Consensus       289 ~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~  368 (1074)
T KOG0250|consen  289 EIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIR  368 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555556666666666555555555555555555555555555555555555555555555544445445544444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          237 REKKELELTQSSIKELSVKF-HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEI  308 (624)
Q Consensus       237 ~~~~el~~le~ql~el~~eL-~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~  308 (624)
                      ........++.++.++.... ..+..++.+...+++.+.++++..+..+.++..+...+..++...+.+...+
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i  441 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI  441 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            44555555555555555554 4444444444444444444444444444444444444444444444333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.36  E-value=0.014  Score=68.64  Aligned_cols=36  Identities=17%  Similarity=0.305  Sum_probs=14.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          257 HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK  292 (624)
Q Consensus       257 ~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~  292 (624)
                      .....++..+..++..++.++.+..-.+...+.++.
T Consensus       468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s  503 (775)
T PF10174_consen  468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS  503 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence            333344444444444444444444333333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.33  E-value=0.018  Score=68.38  Aligned_cols=16  Identities=0%  Similarity=-0.228  Sum_probs=11.1

Q ss_pred             hhHHhHHHHhhhCCCh
Q 041911          444 NLLLQFFDTVKRARDP  459 (624)
Q Consensus       444 ~l~~e~~~Al~~a~dP  459 (624)
                      .+..+.|.|...||.-
T Consensus       840 ~~~e~~~ka~~~cp~~  855 (1074)
T KOG0250|consen  840 PRAEEDQKARTECPEE  855 (1074)
T ss_pred             chhhhCchhhhhCccc
Confidence            5667777777777754

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.30  E-value=0.00037  Score=79.63  Aligned_cols=39  Identities=5%  Similarity=-0.035  Sum_probs=26.4

Q ss_pred             cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      .++...+    .+++...|+..|..-...+-..+...+..+..
T Consensus       147 ~~~~er~----~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~  185 (562)
T PHA02562        147 LSAPARR----KLVEDLLDISVLSEMDKLNKDKIRELNQQIQT  185 (562)
T ss_pred             CChHhHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555    88899999999977665555555555555554

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=0.0097  Score=70.16  Aligned_cols=34  Identities=3%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           26 FDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        26 ~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      +..|||+.+|=..|+...++....+.+.+.....
T Consensus       145 lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~  178 (1141)
T KOG0018|consen  145 LTALFEEISGSIELKPEYEELKYEMAKAEETTTG  178 (1141)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4499999999999999999999999988888877

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.24  E-value=0.041  Score=68.92  Aligned_cols=221  Identities=19%  Similarity=0.189  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHH
Q 041911           51 DLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSL  130 (624)
Q Consensus        51 ~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~l  130 (624)
                      .++.-+-++...++++++..|..   ++..+..+...+...+..+...+..+......+...+.......+.+......+
T Consensus        44 ~k~~v~~eq~~~~~ekK~~~l~q---~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~  120 (1822)
T KOG4674|consen   44 GKTEVNHEQQLSELEKKILRLEQ---RLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSEL  120 (1822)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            34444444466666666666666   333343444444555555555555555555555544544444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041911          131 SESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDY  210 (624)
Q Consensus       131 e~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel  210 (624)
                      ..+-..+          .+.+.....++..+...+..+..++......+.+++....+.       +..--+.+-....+
T Consensus       121 ~~qkr~l----------~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~-------~s~~vs~q~k~~rl  183 (1822)
T KOG4674|consen  121 QEQKRQL----------MELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQET-------QSEDVSSQLKEERL  183 (1822)
T ss_pred             HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            4322111          112222222333333333333333333333333333333332       22222233333333


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhHHhhHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          211 EEVLRDKEKSYGEVKKSLVLCETKLEREKKE----LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDS  286 (624)
Q Consensus       211 ~eele~kEe~l~~l~~~I~~~e~~ie~~~~e----l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~  286 (624)
                      ..+...++....-+.+.+....+.+...+.+    ...++..+.++...+..+.+....+..+++++.+.++.....+..
T Consensus       184 ~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~  263 (1822)
T KOG4674|consen  184 EQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSK  263 (1822)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443333333333    555556666666666666666666666666666666666666665


Q ss_pred             HHHHH
Q 041911          287 MRKQQ  291 (624)
Q Consensus       287 ~~~e~  291 (624)
                      .....
T Consensus       264 ~k~t~  268 (1822)
T KOG4674|consen  264 LKDTA  268 (1822)
T ss_pred             HHhhh
Confidence            55544

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.20  E-value=0.03  Score=65.87  Aligned_cols=66  Identities=14%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          248 SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       248 ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      ++..+..+|.....++..+..++.++..........+...+..+.....+-+..+.+++.+..+++
T Consensus       288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle  353 (775)
T PF10174_consen  288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE  353 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.06  E-value=0.058  Score=63.96  Aligned_cols=62  Identities=11%  Similarity=0.106  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHH
Q 041911          189 REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIK  250 (624)
Q Consensus       189 ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~  250 (624)
                      ....++........++..|......+...+..+..++.+.+..+.........+..+...+.
T Consensus      1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444443333333333333333333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.041  Score=62.85  Aligned_cols=12  Identities=17%  Similarity=0.047  Sum_probs=6.3

Q ss_pred             HHHHHHHHHhhh
Q 041911          514 MKVAGEWKKKMR  525 (624)
Q Consensus       514 ~~lA~~Wk~~~~  525 (624)
                      ..+|..|-..+.
T Consensus       779 a~~ad~~~~~~n  790 (1118)
T KOG1029|consen  779 AVVADTKNESAN  790 (1118)
T ss_pred             eeecccccchhh
Confidence            345566665543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.99  E-value=0.054  Score=60.88  Aligned_cols=11  Identities=27%  Similarity=0.498  Sum_probs=4.6

Q ss_pred             HHHHHHHhhhh
Q 041911          415 REFEERVKEFE  425 (624)
Q Consensus       415 ~~~~~~~~~~~  425 (624)
                      ..+..+|+.++
T Consensus       441 QeL~~yi~~Le  451 (546)
T PF07888_consen  441 QELLEYIERLE  451 (546)
T ss_pred             HHHHHHHHHHH
Confidence            33444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.92  E-value=0.013  Score=67.08  Aligned_cols=8  Identities=50%  Similarity=0.833  Sum_probs=4.3

Q ss_pred             ChhhHHHH
Q 041911          458 DPALLVLH  465 (624)
Q Consensus       458 dPa~lVLd  465 (624)
                      +|.-++||
T Consensus       496 ~~~~lilD  503 (562)
T PHA02562        496 DTNLLILD  503 (562)
T ss_pred             CcCeEEEe
Confidence            55555554

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.91  E-value=0.073  Score=59.83  Aligned_cols=25  Identities=12%  Similarity=0.096  Sum_probs=9.9

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911          253 SVKFHSEEEKLELLHRKVRLHENEV  277 (624)
Q Consensus       253 ~~eL~~~e~eleq~~~ki~~~ekel  277 (624)
                      -++|+...-+..++..++......+
T Consensus       324 ~aeLh~aRLe~aql~~qLad~~l~l  348 (546)
T PF07888_consen  324 MAELHQARLEAAQLKLQLADASLEL  348 (546)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3334444444444444343333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.90  E-value=0.088  Score=60.61  Aligned_cols=203  Identities=15%  Similarity=0.226  Sum_probs=96.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHh----------hHHHHHHHHH
Q 041911          175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK----------LEREKKELEL  244 (624)
Q Consensus       175 lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~----------ie~~~~el~~  244 (624)
                      ....+..+...|+.+-..++.-......+......+...+....+....+..++......          +.....++..
T Consensus       280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~  359 (569)
T PRK04778        280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLES  359 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHH
Confidence            333444455555555555554455555555555555555555555555555555544433          3334444444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 041911          245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDL-----  319 (624)
Q Consensus       245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el-----  319 (624)
                      +..++..+...+......+......+..+..++...+.+.......+.++.++-...+..++..+..+.+....+     
T Consensus       360 Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l  439 (569)
T PRK04778        360 LEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL  439 (569)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            444444444444444444555555555555555555555444444444444444444444444444433110000     


Q ss_pred             h----hHHhhhHHHHhhhhhhhHHHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 041911          320 A----SKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNL  377 (624)
Q Consensus       320 ~----sk~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~  377 (624)
                      -    +--..+..+..+++...+++...---+..+++.+......++.-..+.+.......+
T Consensus       440 pgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~  501 (569)
T PRK04778        440 PGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATL  501 (569)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    000011222222333334444444455666666666666666666666666555443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.84  E-value=0.2  Score=62.76  Aligned_cols=49  Identities=18%  Similarity=0.315  Sum_probs=23.9

Q ss_pred             hhhhhhhhccchHhhhh-hHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHH
Q 041911            8 ISEELRVAESKKETLRR-SFDMAHSQANSVLLFTVQWKDLEEHFDLTKKS   56 (624)
Q Consensus         8 ~~~~~~~~~~k~~~~r~-~~~~liEEAAGI~~y~~rk~eA~k~L~~te~n   56 (624)
                      +.++|..++.+...|-+ -|..++..++-...|..+.......++....+
T Consensus       325 ~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~  374 (1201)
T PF12128_consen  325 IKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSK  374 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555543 35555555555555555554444444433333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.82  E-value=0.15  Score=60.63  Aligned_cols=150  Identities=13%  Similarity=0.177  Sum_probs=68.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 041911          156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEE---REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE  232 (624)
Q Consensus       156 ~~l~~~~~~ieE~~kele~lekeleele~~Iee---ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e  232 (624)
                      .++..+...|.+....+.....-+......|..   +...-.......+.++...+...+.++..+.-....+..|....
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            455566666666666666655555544444332   22222333333333444444444444444444444444444333


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          233 TKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       233 ~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                             ..+...+..+..+..+..+++.-+..+...+..++..++.++.+....-.+.....+...+...+....+..+
T Consensus      1591 -------~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~ 1663 (1758)
T KOG0994|consen 1591 -------RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGL 1663 (1758)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3333334444444444444444444444555555555555544444444444444444444444444433333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.81  E-value=0.12  Score=58.95  Aligned_cols=38  Identities=13%  Similarity=0.101  Sum_probs=21.6

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHH
Q 041911           36 VLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQ   73 (624)
Q Consensus        36 I~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~   73 (624)
                      +..|+.+...+.+.=..+-.-|..   ++.++..+|..-..
T Consensus        43 l~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~   83 (522)
T PF05701_consen   43 LAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQA   83 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666555555555555555555   66666666665543

Several sequences in this family are described as being myosin heavy chain-like.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.78  E-value=0.25  Score=61.88  Aligned_cols=25  Identities=8%  Similarity=0.183  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Q 041911          202 SIQTLIEDYEEVLRDKEKSYGEVKK  226 (624)
Q Consensus       202 ~l~~eieel~eele~kEe~l~~l~~  226 (624)
                      .+...+......+.....++..+..
T Consensus       508 ~a~~~l~~~~~~~~~~~~~~~~l~~  532 (1201)
T PF12128_consen  508 QAEEELRQARRELEELRAQIAELQR  532 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333334443333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.74  E-value=0.0098  Score=60.26  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL  300 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~  300 (624)
                      ..+...|...+..+..+..+++.++..+..++.++++++.....++...+..+.+....++.
T Consensus        88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~  149 (239)
T COG1579          88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555666666666666666666666666666666666665555555555444444443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.71  E-value=0.16  Score=57.69  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 041911           36 VLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIR--------LLDQRAKEIESKEI----KLVFVEKKIEDCNGELE  100 (624)
Q Consensus        36 I~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~--------~L~~qa~~~e~~~~----e~~~~~~~lee~~~~Le  100 (624)
                      +..|+.-|+++..-.-.-..||++   -..++.-+-+        +|+.....+..+..    ++-.....+..+...+.
T Consensus       171 ~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~  250 (786)
T PF05483_consen  171 MKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLK  250 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            557888888888888888888888   2333332221        33333333333222    33344455556666666


Q ss_pred             HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911          101 CKEKELGLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus       101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      .++..+..+...+.+....+..++........
T Consensus       251 eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E  282 (786)
T PF05483_consen  251 EKENKIKDLLLLLQESQDKCNQLEEKTKEQHE  282 (786)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666555444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.69  E-value=0.19  Score=57.95  Aligned_cols=46  Identities=13%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911           87 FVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus        87 ~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      .....+..+...+...+.++..+.+.+..+...-......+..+..
T Consensus       102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~  147 (569)
T PRK04778        102 KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD  147 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.68  E-value=0.21  Score=58.24  Aligned_cols=126  Identities=13%  Similarity=0.306  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHH-----------HHHHHHHHHHHHHH
Q 041911          185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREK-----------KELELTQSSIKELS  253 (624)
Q Consensus       185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~-----------~el~~le~ql~el~  253 (624)
                      .+.+....++...-+.+-+..+-+.++.+++.+.+++.++.+.++-....++..+           ..++.+-.++++.-
T Consensus       305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal  384 (1243)
T KOG0971|consen  305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL  384 (1243)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444445555555555555555555444444333322           23333345566666


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          254 VKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       254 ~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      .+|.++...-.+-..+.   .++++.++.++...++.-+.+..+++-.+..+..++..++
T Consensus       385 VrLRDlsA~ek~d~qK~---~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  385 VRLRDLSASEKQDHQKL---QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHhcchHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555555444443333   6666677777777777777777777777777777777765

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=0.16  Score=56.75  Aligned_cols=59  Identities=14%  Similarity=0.168  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHH
Q 041911           82 EIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEE  140 (624)
Q Consensus        82 ~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~e  140 (624)
                      .+.+..++.++..+.................+..+..+++..+.+++.+......+...
T Consensus       265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~  323 (581)
T KOG0995|consen  265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ  323 (581)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666554444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.66  E-value=0.19  Score=57.24  Aligned_cols=140  Identities=14%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH
Q 041911          172 IELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKE  251 (624)
Q Consensus       172 le~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~e  251 (624)
                      +.....++...+..|.....++..++....++..++.....++.............+.+....+.....++.........
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~  362 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK  362 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence            44444444444455555555555555555555555555555555555555555555555555555555555444333333


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          252 LSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       252 l~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      .......+...++++.........+......++...+.++...--.+...+..+....++
T Consensus       363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke  422 (522)
T PF05701_consen  363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKE  422 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333333333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.65  E-value=0.24  Score=58.31  Aligned_cols=93  Identities=18%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHh
Q 041911           95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS-------V----EEWINKCQAYQKELQLLKN  163 (624)
Q Consensus        95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e-------l----~e~~~eL~~~~~~l~~~~~  163 (624)
                      ....+......+..+...+.+++..+..+..+.+++..+.....+..-.       +    .-...+-......+....+
T Consensus       256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~  335 (1200)
T KOG0964|consen  256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD  335 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence            3344444555555555566666666666666555555442111111111       1    1111111222234445566


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          164 LIKECCDEIELREKKVGEVQRSIE  187 (624)
Q Consensus       164 ~ieE~~kele~lekeleele~~Ie  187 (624)
                      .|++...++..+......+...-.
T Consensus       336 ki~e~~~EL~~I~Pky~~l~~ee~  359 (1200)
T KOG0964|consen  336 KIEEKKDELSKIEPKYNSLVDEEK  359 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhHHH
Confidence            666666666666665555443333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.63  E-value=0.025  Score=57.33  Aligned_cols=146  Identities=18%  Similarity=0.343  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHH--HHHHHHHHHhhhh
Q 041911          181 EVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELT--QSSIKELSVKFHS  258 (624)
Q Consensus       181 ele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~l--e~ql~el~~eL~~  258 (624)
                      ++...+......+...+.++..+...+.....+++..+.++..++..|.....++.+.+..+.+.  +.++..+..++..
T Consensus        21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~  100 (239)
T COG1579          21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI  100 (239)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            33334444444455555555555555555555555555555555555555555555555444332  4555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 041911          259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQL  326 (624)
Q Consensus       259 ~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~  326 (624)
                      +......+...+.++..+++....++...+.......+.+...+..++.-...+......+.++..++
T Consensus       101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L  168 (239)
T COG1579         101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL  168 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555544444444444444444444

>PRK11637 AmiB activator; Provisional

Probab=97.61  E-value=0.099  Score=58.01  Aligned_cols=11  Identities=9%  Similarity=-0.028  Sum_probs=5.6

Q ss_pred             hhhcCCchhHH
Q 041911          587 SITAEGRSSSS  597 (624)
Q Consensus       587 li~~g~~i~Av  597 (624)
                      -|..|+.|-.|
T Consensus       388 ~V~~G~~ig~~  398 (428)
T PRK11637        388 QVRAGQPIALV  398 (428)
T ss_pred             EECCCCeEEee
Confidence            45555555433

>PRK11637 AmiB activator; Provisional

Probab=97.60  E-value=0.11  Score=57.71  Aligned_cols=47  Identities=21%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911           88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL  134 (624)
Q Consensus        88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l  134 (624)
                      +...+..+...+...+.++..+...|..++.+|..++.++......+
T Consensus        80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.56  E-value=0.33  Score=57.35  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=22.6

Q ss_pred             HHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 041911          339 EFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNL  377 (624)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~  377 (624)
                      ++..+.-.+.-.+.++..|.--++...++++.....+..
T Consensus       503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~  541 (1195)
T KOG4643|consen  503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN  541 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444445555666666766677777776665544443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.55  E-value=0.53  Score=59.65  Aligned_cols=192  Identities=16%  Similarity=0.204  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041911           85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNL  164 (624)
Q Consensus        85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~  164 (624)
                      .-.+..+...+...+...+.++.++.+.+.++...+..++.+.+....++......+    ....++......+..+...
T Consensus       288 Aag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l----r~q~ei~~l~~~LeELee~  363 (1486)
T PRK04863        288 ALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL----RQQEKIERYQADLEELEER  363 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            335556777788888888888888888888888888888888888888765433211    1122333333444444444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH---HhhHHHHHH
Q 041911          165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE---TKLEREKKE  241 (624)
Q Consensus       165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e---~~ie~~~~e  241 (624)
                      +.+....+......+..+...+...+..+..++..+..+...+..++.++...+..+..+.+.-.-+.   =..+.....
T Consensus       364 Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~  443 (1486)
T PRK04863        364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDW  443 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            44444455555555555555555555555555555555555555555555555555554444322221   112334445


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911          242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESL  280 (624)
Q Consensus       242 l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~  280 (624)
                      +..+..++.+....+..++.++..+...+..+.+.....
T Consensus       444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l  482 (1486)
T PRK04863        444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV  482 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555556666665555555555555555555554443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.55  E-value=0.15  Score=53.15  Aligned_cols=82  Identities=11%  Similarity=0.178  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          221 YGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL  300 (624)
Q Consensus       221 l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~  300 (624)
                      +.++....+.....|....++..++-.++..+-.+......+.+.++.++-.....+.+.+.++...++++.++.+.+..
T Consensus       167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~  246 (294)
T COG1340         167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA  246 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444455556666666666666666666666666666666666666666666666666666665554


Q ss_pred             HH
Q 041911          301 KK  302 (624)
Q Consensus       301 k~  302 (624)
                      .+
T Consensus       247 l~  248 (294)
T COG1340         247 LR  248 (294)
T ss_pred             HH
Confidence            43

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.55  E-value=0.015  Score=54.66  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHH
Q 041911          164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE  243 (624)
Q Consensus       164 ~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~  243 (624)
                      ........++.++..+..++.....++.+|.+++.....+...++.+...+......+..........    +....-+.
T Consensus         8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rriq   83 (143)
T PF12718_consen    8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRRIQ   83 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhhHH
Confidence            33333344444444444444444445555555444444444444444444444443333332222211    12233344


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE  299 (624)
Q Consensus       244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle  299 (624)
                      .++.++......|......+.++..+.+|.++++...+.+....+..+.++...+.
T Consensus        84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44555555555555556666666666666666666666555555555555444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.50  E-value=0.088  Score=61.64  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911           91 KIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCD  170 (624)
Q Consensus        91 ~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~k  170 (624)
                      ++..+..+|...++.-++++.+|..+...-..+..++.+++.+.+.++..+..+.   .........+..+..++.++.+
T Consensus       426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~---~aRq~DKq~l~~LEkrL~eE~~  502 (697)
T PF09726_consen  426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV---QARQQDKQSLQQLEKRLAEERR  502 (697)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444434444444444444433333333321   1222222333444455555555


Q ss_pred             HHHHHHHhHHH
Q 041911          171 EIELREKKVGE  181 (624)
Q Consensus       171 ele~lekelee  181 (624)
                      ....+++++.+
T Consensus       503 ~R~~lEkQL~e  513 (697)
T PF09726_consen  503 QRASLEKQLQE  513 (697)
T ss_pred             HHHHHHHHHHH
Confidence            55555554444

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.43  E-value=0.43  Score=55.76  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhH
Q 041911          292 KKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLK  327 (624)
Q Consensus       292 ~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~~  327 (624)
                      +.++..|..+.-.++.+.+.+++.+.+|+--+...+
T Consensus       447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~E  482 (1243)
T KOG0971|consen  447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE  482 (1243)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777788888888777766665554443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.45  Score=54.77  Aligned_cols=9  Identities=22%  Similarity=0.383  Sum_probs=5.0

Q ss_pred             hhhHhhHHH
Q 041911           37 LLFTVQWKD   45 (624)
Q Consensus        37 ~~y~~rk~e   45 (624)
                      ..|+++|++
T Consensus       312 ~TFEDKrke  320 (1118)
T KOG1029|consen  312 VTFEDKRKE  320 (1118)
T ss_pred             cchhhhhHH
Confidence            456666554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.36  E-value=0.28  Score=51.86  Aligned_cols=40  Identities=33%  Similarity=0.392  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911          241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESL  280 (624)
Q Consensus       241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~  280 (624)
                      .+......+..+...+.++.+++..+......++..+...
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l  249 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL  249 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence            3333344444444444444444444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.33  E-value=0.71  Score=55.85  Aligned_cols=7  Identities=43%  Similarity=0.667  Sum_probs=3.2

Q ss_pred             HHHHHhh
Q 041911          492 ILLLEQL  498 (624)
Q Consensus       492 ilLLe~l  498 (624)
                      ++-|.++
T Consensus      1023 v~~L~ql 1029 (1317)
T KOG0612|consen 1023 VMELSQL 1029 (1317)
T ss_pred             HHHHHHH
Confidence            4444444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.27  E-value=0.21  Score=48.68  Aligned_cols=135  Identities=24%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHH
Q 041911          160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREK  239 (624)
Q Consensus       160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~  239 (624)
                      ....++.+.+.-.+.......+.-..+.-++.+|.......+.....+.++..++...       .+.+.+.+..-+...
T Consensus        64 ~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~-------~~nlk~l~~~ee~~~  136 (205)
T KOG1003|consen   64 AQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL-------DSNLKSLSAKEEKLE  136 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhHHHHHHHHHHHHh
Confidence            3333333333333333333333334444444444444444444444444444444444       444444444444556


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          240 KELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK  301 (624)
Q Consensus       240 ~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k  301 (624)
                      .....|..+++.+..+|...++.-+.....+..+++.+...++.+...+..+.....+|+-.
T Consensus       137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            67778888888888888888888888888888888888888888887777777766666543

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.79  Score=54.79  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             ccChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchH
Q 041911          528 VENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAP  569 (624)
Q Consensus       528 ~~~~~ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~  569 (624)
                      |+..+.|+|+|--+-+|.=++-|=-||+-.-+....--+.|.
T Consensus      1055 GEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas 1096 (1141)
T KOG0018|consen 1055 GEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS 1096 (1141)
T ss_pred             cHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH
Confidence            457899999999999999999998888765554444334443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.57  Score=54.37  Aligned_cols=32  Identities=9%  Similarity=0.120  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911          200 ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC  231 (624)
Q Consensus       200 ~e~l~~eieel~eele~kEe~l~~l~~~I~~~  231 (624)
                      +.....+..++..++...+++++++...++..
T Consensus       801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~  832 (970)
T KOG0946|consen  801 LSEESTRLQELQSELTQLKEQIQTLLERTSAA  832 (970)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44444455555556666666666665555554

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.23  E-value=0.93  Score=55.22  Aligned_cols=34  Identities=24%  Similarity=0.205  Sum_probs=22.1

Q ss_pred             CChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHH
Q 041911          550 FDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQC  586 (624)
Q Consensus       550 fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~  586 (624)
                      .|.+-+..++..+-.....   .+.+|.+.++|.+.+
T Consensus       854 LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~e  887 (908)
T COG0419         854 LDEERLEKLAEILEELLSD---GRQIIIISHVEELKE  887 (908)
T ss_pred             CCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHH
Confidence            3677777666655543322   667788888888775

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.21  E-value=0.063  Score=50.52  Aligned_cols=91  Identities=22%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 041911          207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE---KLELLHRKVRLHENEVESLEQK  283 (624)
Q Consensus       207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~---eleq~~~ki~~~ekel~~~~~e  283 (624)
                      .+.+...+..++........+|.+...++...+.++..++.++.++...+...+.   ..+++..+|..++.++..-...
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~   95 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK   95 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333344444444444444444444433   2334555555555555555555


Q ss_pred             HHHHHHHHHHHHHH
Q 041911          284 LDSMRKQQKKYFDD  297 (624)
Q Consensus       284 l~~~~~e~~~l~kE  297 (624)
                      |..+...++.....
T Consensus        96 L~e~~ekl~e~d~~  109 (143)
T PF12718_consen   96 LKETTEKLREADVK  109 (143)
T ss_pred             HHHHHHHHHHHHHH
Confidence            54444444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.20  E-value=0.65  Score=52.98  Aligned_cols=14  Identities=21%  Similarity=0.214  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q 041911           46 LEEHFDLTKKSLEK   59 (624)
Q Consensus        46 A~k~L~~te~nL~r   59 (624)
                      +.-+++..+.....
T Consensus       220 ~~~k~~~leeey~~  233 (786)
T PF05483_consen  220 DYEKFEDLEEEYKK  233 (786)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.18  E-value=0.64  Score=52.50  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=16.9

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHH
Q 041911           38 LFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        38 ~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      +|..-...|.+-++.+.....+
T Consensus        89 ~ye~El~~ar~~l~e~~~~ra~  110 (546)
T KOG0977|consen   89 KYEAELATARKLLDETARERAK  110 (546)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHH
Confidence            7888888888888887666554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.14  E-value=0.0001  Score=88.06  Aligned_cols=149  Identities=19%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHH
Q 041911          165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELEL  244 (624)
Q Consensus       165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~  244 (624)
                      +.++..+++.+.+....+++.-......+.++...++.+..........+..++..+..+...+......+.........
T Consensus       133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~k  212 (859)
T PF01576_consen  133 VAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAK  212 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444455555555444444444445555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      +...+.++...|...+..+.++.....++..++......+..-.+.-..+.+.+...+.+++.+...++
T Consensus       213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle  281 (859)
T PF01576_consen  213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLE  281 (859)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            566666666666666666666666666666666666655555555555555555555555555555544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.13  E-value=0.45  Score=49.62  Aligned_cols=83  Identities=19%  Similarity=0.296  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          203 IQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ  282 (624)
Q Consensus       203 l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~  282 (624)
                      +..++..+........+.+..+...+......+.....+...+.....++-.++-...+..+++..++..+.+++.....
T Consensus       163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555554444444444444444444444444444444444444444444444444444


Q ss_pred             HHH
Q 041911          283 KLD  285 (624)
Q Consensus       283 el~  285 (624)
                      .+.
T Consensus       243 ~ik  245 (294)
T COG1340         243 KIK  245 (294)
T ss_pred             HHH
Confidence            433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.08  E-value=0.36  Score=47.75  Aligned_cols=39  Identities=10%  Similarity=0.199  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ  282 (624)
Q Consensus       244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~  282 (624)
                      .+..++..-..+...+......+..+|.++...++++..
T Consensus       154 ~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer  192 (194)
T PF15619_consen  154 SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER  192 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445555555555555555555555555555555555543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.03  E-value=1.1  Score=52.53  Aligned_cols=73  Identities=23%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhhhhc-------------------CC--------CCCHhHHHHHHHHHHHHHHhhhhhc-------cChH-
Q 041911          488 RRSCILLLEQLSTV-------------------AP--------EINAQVRDEAMKVAGEWKKKMRVAV-------ENSL-  532 (624)
Q Consensus       488 r~~cilLLe~l~~~-------------------~p--------~~~~~v~~~A~~lA~~Wk~~~~~~~-------~~~~-  532 (624)
                      -.+|..||++.+..                   +|        .++..+.-.|+.+|  |=.+.-+++       .++. 
T Consensus       790 L~~ct~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa--~aatvLVeaAdkvV~~~gkfE  867 (980)
T KOG0980|consen  790 LSACTALMEAIMALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAAKAVA--WAATVLVEAADKVVTGTGKFE  867 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHH--HHHHHHHHHhhhHhcCCCCcH
Confidence            34799999998741                   22        35556666676555  555544332       1111 


Q ss_pred             -------H-HHHHHHHHHHhcCCCCCChHHHHHHHHHh
Q 041911          533 -------E-VLGFLHLLAAYRLAPAFDGEELESLLCIV  562 (624)
Q Consensus       533 -------e-a~~fL~lla~ygl~s~fd~~el~~l~~~v  562 (624)
                             | |-.-.||||+-.+..+|+.--+-+|=...
T Consensus       868 eLIVas~EIAAsTaQLVaASrVKA~k~S~~ld~L~~as  905 (980)
T KOG0980|consen  868 ELIVASQEIAASTAQLVAASRVKADKDSKKLDALEVAS  905 (980)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence                   1 23457999999999999888877775443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.97  E-value=0.00018  Score=85.94  Aligned_cols=19  Identities=5%  Similarity=0.214  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHHHHHHH
Q 041911           60 QSNYVDVKIRLLDQRAKEI   78 (624)
Q Consensus        60 l~~Eie~kl~~L~~qa~~~   78 (624)
                      .+.++..+++.|.+....+
T Consensus       132 ~~~eL~eqle~lqk~k~~l  150 (859)
T PF01576_consen  132 AVAELNEQLEQLQKQKAKL  150 (859)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555555543333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.96  E-value=1  Score=51.03  Aligned_cols=188  Identities=14%  Similarity=0.085  Sum_probs=83.7

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911           35 SVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGL  108 (624)
Q Consensus        35 GI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~  108 (624)
                      +|--...|=+.|+..+-.+-..|-.      ++..+.+.+.+++.-..+.+++.       ..+......+...+.+-..
T Consensus        74 EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk-------~~lee~~~el~~~k~qq~~  146 (629)
T KOG0963|consen   74 EIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELK-------EELEEVNNELADLKTQQVT  146 (629)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHHHhhhhhhHHH
Confidence            3344456777888888888888887      77777777777766222333332       2222333333333333223


Q ss_pred             HHcHhhhHHHhHhHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH-
Q 041911          109 VQKXIGECNCELHLKENELNSLSESL-NIKKEELSS-VEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRS-  185 (624)
Q Consensus       109 l~~~I~ele~Eie~le~el~~le~~l-~~k~~eL~e-l~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~-  185 (624)
                      +......+.+.-..+...+...-... ....+...+ ...+.+.......++..+...+..+...+.....++...... 
T Consensus       147 v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~  226 (629)
T KOG0963|consen  147 VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY  226 (629)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence            32222222222222222222111000 000011111 111222223333444444444444444444444444433333 


Q ss_pred             ---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          186 ---IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV  229 (624)
Q Consensus       186 ---Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~  229 (624)
                         ...+..++.-...+++.++..|-.++.+++.+..++........
T Consensus       227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~  273 (629)
T KOG0963|consen  227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK  273 (629)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence               33344555555555666666666666666666665555544433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=1.2  Score=51.78  Aligned_cols=114  Identities=13%  Similarity=-0.002  Sum_probs=53.8

Q ss_pred             hhhhhHHHHHHhhhhhhhhHhh-----HHHHHHHHHHHHHH----HHH---------HHHHHHHhHHHHHHH-------H
Q 041911           21 TLRRSFDMAHSQANSVLLFTVQ-----WKDLEEHFDLTKKS----LEK---------QSNYVDVKIRLLDQR-------A   75 (624)
Q Consensus        21 ~~r~~~~~liEEAAGI~~y~~r-----k~eA~k~L~~te~n----L~r---------l~~Eie~kl~~L~~q-------a   75 (624)
                      -.|..+-.+|..+-|=--|-.|     |.++-.+....++-    ...         +..+++..+.++-.-       .
T Consensus       566 ~~r~~~~~lItkrvGke~f~srL~~lsr~e~ysra~~kqq~~l~~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~  645 (970)
T KOG0946|consen  566 VSRSDVYQLITKRVGKENFISRLQRLSRHELYSRASMKQQPQLKSNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQT  645 (970)
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHhhHhHHHHHHhhccCccCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhh
Confidence            4566777888888887666554     44444443333322    111         444544444443321       1


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911           76 KEIESK----EIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL  134 (624)
Q Consensus        76 ~~~e~~----~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l  134 (624)
                      ..++++    ......+...+.+....++..++...++.-..++++.++...-.+.+++..+.
T Consensus       646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~  708 (970)
T KOG0946|consen  646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL  708 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222    11223444455555555555555555555444444444444444444444443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.93  E-value=0.65  Score=48.24  Aligned_cols=130  Identities=17%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041911          193 LAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL  272 (624)
Q Consensus       193 l~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~  272 (624)
                      +..+....+.+..++...+....+++..+.-....++.+.-.++....++...+.|+++++.-...-+..+.....+-..
T Consensus       139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes  218 (305)
T PF14915_consen  139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES  218 (305)
T ss_pred             HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            33334444444445555555555555555555555555554555666666666777777776666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 041911          273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASK  322 (624)
Q Consensus       273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk  322 (624)
                      ++.++-....+-...+.++....+....+++-+-.++..|...+..|.+.
T Consensus       219 ~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae  268 (305)
T PF14915_consen  219 LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE  268 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66666555555555556666666666666666666666665666665544

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.84  E-value=1.6  Score=51.29  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=7.9

Q ss_pred             HHHHhhhhHHHHHHHHHHHHH
Q 041911          251 ELSVKFHSEEEKLELLHRKVR  271 (624)
Q Consensus       251 el~~eL~~~e~eleq~~~ki~  271 (624)
                      .++.++..+..++..++..+.
T Consensus       498 ~l~~El~~l~~e~~~lq~~~~  518 (980)
T KOG0980|consen  498 SLRQELALLLIELEELQRTLS  518 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.81  E-value=1.5  Score=50.63  Aligned_cols=47  Identities=28%  Similarity=0.379  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911          185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC  231 (624)
Q Consensus       185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~  231 (624)
                      .......+......++..+...+.++..++..+++.+..+...+...
T Consensus       434 ~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~  480 (594)
T PF05667_consen  434 KASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL  480 (594)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33333344444444445555555555555555555555555544443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.81  E-value=1.3  Score=49.83  Aligned_cols=39  Identities=10%  Similarity=0.144  Sum_probs=16.2

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          246 QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKL  284 (624)
Q Consensus       246 e~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el  284 (624)
                      .+++.+...++..++..+.+..--|..+...+....-++
T Consensus       431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el  469 (581)
T KOG0995|consen  431 SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELEL  469 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444443333333333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.65  E-value=0.75  Score=44.96  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 041911          182 VQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE  261 (624)
Q Consensus       182 le~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~  261 (624)
                      .+..+...+.++...+.-.+.+....++....+...+..+.....+....+..+.....++.-+..-++.+...-..+..
T Consensus        58 dEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q  137 (205)
T KOG1003|consen   58 LEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQ  137 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh
Confidence            33344444444444444444444455555555555555555444444444333333333333333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRE  304 (624)
Q Consensus       262 eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~e  304 (624)
                      ..+.+...|..+.-++++-.......++.+..|.++.+..+..
T Consensus       138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k  180 (205)
T KOG1003|consen  138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK  180 (205)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence            3344444444444444444444444444444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.62  E-value=2  Score=49.59  Aligned_cols=48  Identities=4%  Similarity=0.144  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          265 LLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       265 q~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                      .+..+|-..-+-+.-...++.+.-.+...+.+++......++..=...
T Consensus       488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~  535 (594)
T PF05667_consen  488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT  535 (594)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            334555555555566666666666666666666666665555444433

>PRK09039 hypothetical protein; Validated

Probab=96.62  E-value=0.59  Score=50.37  Aligned_cols=12  Identities=8%  Similarity=0.199  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHH
Q 041911          295 FDDVELKKRELN  306 (624)
Q Consensus       295 ~kEle~k~~ele  306 (624)
                      ..+|...+.++-
T Consensus       189 ~~~l~~~~~~~~  200 (343)
T PRK09039        189 VQELNRYRSEFF  200 (343)
T ss_pred             HHHHHHhHHHHH
Confidence            344444444443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.60  E-value=2.8  Score=51.00  Aligned_cols=7  Identities=43%  Similarity=0.387  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 041911           52 LTKKSLE   58 (624)
Q Consensus        52 ~te~nL~   58 (624)
                      .+..+|+
T Consensus       465 ~~~keL~  471 (1317)
T KOG0612|consen  465 EMDKELE  471 (1317)
T ss_pred             HHHHHHH
Confidence            3333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.60  E-value=1.4  Score=47.29  Aligned_cols=64  Identities=9%  Similarity=0.231  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          237 REKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL  300 (624)
Q Consensus       237 ~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~  300 (624)
                      ....++............++....+.+++....|......|...+.++...+.+..-+..+++-
T Consensus       214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~  277 (499)
T COG4372         214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ  277 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555556666666666666666666666666666665555444444444444333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.53  E-value=1.5  Score=46.96  Aligned_cols=30  Identities=17%  Similarity=0.230  Sum_probs=20.0

Q ss_pred             HHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Q 041911           50 FDLTKKSLEK---QSNYVDVKIRLLDQRAKEIE   79 (624)
Q Consensus        50 L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e   79 (624)
                      |--.+.|+..   -++.|.|+|..++.+...+.
T Consensus        62 lf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~   94 (499)
T COG4372          62 LFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQ   94 (499)
T ss_pred             HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3344566666   56778888888888755443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.45  E-value=3.5  Score=50.31  Aligned_cols=41  Identities=15%  Similarity=0.076  Sum_probs=26.5

Q ss_pred             hccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           15 AESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        15 ~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      ..++|.+..    .|+.+.-|+-.|+.-...+-......+..++.
T Consensus       149 l~~~~~er~----~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~  189 (908)
T COG0419         149 LKSKPKERK----EILDELFGLEKYEKLSELLKEVIKEAKAKIEE  189 (908)
T ss_pred             HhcCcHHHH----HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555    67777778888777666666666555555555

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.45  E-value=2.5  Score=48.64  Aligned_cols=34  Identities=9%  Similarity=0.129  Sum_probs=14.2

Q ss_pred             HHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 041911          343 KKKELSSIEKTIAECSKEVELKKNQLNLVQHESN  376 (624)
Q Consensus       343 ~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~  376 (624)
                      .+.+++..+..+.+....|..-++.-......|.
T Consensus       387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~  420 (560)
T PF06160_consen  387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK  420 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444443333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.39  E-value=2.1  Score=47.03  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 041911           84 KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS-------VEEWINKCQAYQK  156 (624)
Q Consensus        84 e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e-------l~e~~~eL~~~~~  156 (624)
                      .|+.++.....+......++.+...--..+..+..+|...+.++..++..++++...+..       ++....+...+..
T Consensus       303 k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r  382 (622)
T COG5185         303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR  382 (622)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            455555555555666666666666666666677777777777777777666555555532       3333334444445


Q ss_pred             HHHHHHhHHHHHHHHHHHHH
Q 041911          157 ELQLLKNLIKECCDEIELRE  176 (624)
Q Consensus       157 ~l~~~~~~ieE~~kele~le  176 (624)
                      .++.+..++.++.+.+-...
T Consensus       383 eL~~i~~~~~~L~k~V~~~~  402 (622)
T COG5185         383 ELDKINIQSDKLTKSVKSRK  402 (622)
T ss_pred             HHHHhcchHHHHHHHHHhHH
Confidence            55555555555555544433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.30  E-value=1.9  Score=45.58  Aligned_cols=62  Identities=21%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN  306 (624)
Q Consensus       245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele  306 (624)
                      |..++.++..........+......+..+...+.+...++.+.+..+..+.+.+...+..+.
T Consensus       193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~  254 (312)
T PF00038_consen  193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence            34455555544444444444444444444445544444444444444444444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.28  E-value=3.8  Score=48.94  Aligned_cols=42  Identities=14%  Similarity=0.033  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911           92 IEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES  133 (624)
Q Consensus        92 lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~  133 (624)
                      +-.+..++..++...+..+..++++..+..++..+..++...
T Consensus       303 iiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~  344 (1195)
T KOG4643|consen  303 IIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQ  344 (1195)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334555555555555555555566666666555555555444

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.16  E-value=5.3  Score=49.43  Aligned_cols=18  Identities=0%  Similarity=-0.193  Sum_probs=10.9

Q ss_pred             CCCchhHHHhhhcCCchh
Q 041911          578 GDKVPGLQCSITAEGRSS  595 (624)
Q Consensus       578 ~~k~~~~v~li~~g~~i~  595 (624)
                      ..+.-+||.+|..+.|.+
T Consensus      1250 ITHDE~fv~~i~~~~~~e 1267 (1294)
T KOG0962|consen 1250 ITHDEDFVQLLGRSAYPE 1267 (1294)
T ss_pred             eehHHHHHHHhhhcccch
Confidence            345556777666665554

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.16  E-value=1.9  Score=44.42  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=32.1

Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911          160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL  228 (624)
Q Consensus       160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I  228 (624)
                      ...+.+.+..+....+..+++.+...+++....+.+.+.++...+..+..++.+|....++|..+..-+
T Consensus        35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l  103 (265)
T COG3883          35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL  103 (265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444444444433

>TIGR00634 recN DNA repair protein RecN

Probab=96.15  E-value=2.2  Score=49.15  Aligned_cols=61  Identities=10%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH
Q 041911           17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK   81 (624)
Q Consensus        17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~   81 (624)
                      .+|...|    .|+++.||+..+..+...+..++......+.+   -..++..+++.|+-|..+++..
T Consensus       141 ~~~~~~~----~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~  204 (563)
T TIGR00634       141 FRPDEQR----QLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA  204 (563)
T ss_pred             cCHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence            5677777    89999999988888888888888888888887   3456777777777777766654

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.14  E-value=1.6  Score=43.24  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911          234 KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE  274 (624)
Q Consensus       234 ~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~e  274 (624)
                      .+..+...+..+.++..+++.++...+.++..+...+.|+.
T Consensus        69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~  109 (194)
T PF15619_consen   69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK  109 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444445555555555544444444433

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=3.1  Score=46.52  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLD-------SMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~-------~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      +.+-=+++.++..++..    .-+++.+.-.|..++.+++=....+.       -+++++++-+.-+..-+.+-.++.++
T Consensus       176 EEENIsLQKqVs~LR~s----QVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE  251 (772)
T KOG0999|consen  176 EEENISLQKQVSNLRQS----QVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE  251 (772)
T ss_pred             HHhcchHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33444556666555444    66666666666666666555544443       23455555555555555666667777


Q ss_pred             HH
Q 041911          312 IE  313 (624)
Q Consensus       312 le  313 (624)
                      ++
T Consensus       252 L~  253 (772)
T KOG0999|consen  252 LS  253 (772)
T ss_pred             HH
Confidence            75

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.05  E-value=1.3  Score=41.47  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV  298 (624)
Q Consensus       241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEl  298 (624)
                      ++..+..++..+..++..++.++..+...-..+.+.+.....++...+.-+..+.+-+
T Consensus        53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l  110 (140)
T PF10473_consen   53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL  110 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4444444444444444455555555554444555554444444443333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.95  E-value=5.2  Score=47.52  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK  301 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k  301 (624)
                      ..++.+-......+...+..++++..++..+|..++.++...+.--.........+.-++...
T Consensus       651 E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~  713 (769)
T PF05911_consen  651 ETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM  713 (769)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence            344444455555555666666666666666666666666555444333333344444444443

The function of this family is unknown.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.77  E-value=2.4  Score=42.33  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041911          199 NISSIQTLIEDYEEVLRDKEKSYGEV  224 (624)
Q Consensus       199 e~e~l~~eieel~eele~kEe~l~~l  224 (624)
                      .-+.+...+.+....+...+.+++++
T Consensus       112 NEE~Lkk~~~ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen  112 NEETLKKCIEEYEERLKKEEQRYQAL  137 (207)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.67  E-value=6  Score=46.15  Aligned_cols=23  Identities=22%  Similarity=0.099  Sum_probs=8.2

Q ss_pred             HHHHHHHHHcHhhhHHHhHhHHH
Q 041911          102 KEKELGLVQKXIGECNCELHLKE  124 (624)
Q Consensus       102 ~e~~l~~l~~~I~ele~Eie~le  124 (624)
                      .+.+.+.+++-|..++..+.+.+
T Consensus       118 lE~ekq~lQ~ti~~~q~d~ke~e  140 (1265)
T KOG0976|consen  118 LEMEKQKLQDTIQGAQDDKKENE  140 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.50  E-value=6  Score=44.96  Aligned_cols=39  Identities=13%  Similarity=0.180  Sum_probs=19.7

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911           37 LLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIE   79 (624)
Q Consensus        37 ~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e   79 (624)
                      +-+..-|..=-+.|...+..|...+    .++..|+.|...++
T Consensus        31 s~ir~sR~rEK~El~~LNDRLA~YI----ekVR~LEaqN~~L~   69 (546)
T KOG0977|consen   31 SPIRDSREREKKELQELNDRLAVYI----EKVRFLEAQNRKLE   69 (546)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            3344444444445555555555422    35677777655543

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.43  E-value=6.4  Score=44.89  Aligned_cols=95  Identities=22%  Similarity=0.335  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh-----------hhhhhhhh----hhhh
Q 041911          338 KEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFK-----------EKEKHFDS----LKKG  402 (624)
Q Consensus       338 k~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~~~~~~~~~~k~~~-----------~k~~~~~~----~~~~  402 (624)
                      +..+.++-++...+++++.-..++|-.+++|+++ .+.+--.+++- .+|.++           .-.+-|+|    +++.
T Consensus       310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs-iLk~ief~~se~a~~~~~~~~~leslLl~knr~  387 (629)
T KOG0963|consen  310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS-ILKAIEFGDSEEANDEDETAKTLESLLLEKNRK  387 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH-HHHHhhcCCcccccccccccchHHHHHHHHHhh
Confidence            3445666666667777777777777777777665 23221111110 111110           00022333    6677


Q ss_pred             HHHHhhHHHHhHHHHHHHHhhhhhhHHHHHHH
Q 041911          403 LEDRSQDLEVKEREFEERVKEFELREKEFDSI  434 (624)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~  434 (624)
                      |....-.|.+.+-.|.+++-+...+-.++...
T Consensus       388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~  419 (629)
T KOG0963|consen  388 LQNENASLRVANSGLSGRITELSKKGEELEAK  419 (629)
T ss_pred             hhHHHHHHhccccccchhHHHHHhhhhhhHHH
Confidence            77777777777777877777776666666543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.41  E-value=7.5  Score=45.60  Aligned_cols=13  Identities=8%  Similarity=0.084  Sum_probs=6.4

Q ss_pred             hhhHHHHHhcCcC
Q 041911          459 PALLVLHAMSGFY  471 (624)
Q Consensus       459 Pa~lVLd~i~~f~  471 (624)
                      |.-+|+|.--|++
T Consensus       575 ~~p~iiD~p~~~l  587 (650)
T TIGR03185       575 RLPVIIDTPLGRL  587 (650)
T ss_pred             CCCEEEcCCcccc
Confidence            4445555554444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.37  E-value=5.5  Score=43.76  Aligned_cols=44  Identities=23%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHH
Q 041911           84 KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENEL  127 (624)
Q Consensus        84 e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el  127 (624)
                      .+......+..+...+......+..+...|..++..+..++.+-
T Consensus        67 ~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          67 QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.35  E-value=5.6  Score=43.72  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=17.9

Q ss_pred             HHHHHhhhh-hccChH-----HHHHHHHHHHHhcCCCCCChHH
Q 041911          518 GEWKKKMRV-AVENSL-----EVLGFLHLLAAYRLAPAFDGEE  554 (624)
Q Consensus       518 ~~Wk~~~~~-~~~~~~-----ea~~fL~lla~ygl~s~fd~~e  554 (624)
                      ..||.++.. +.|+.+     ...-|---+-+||++--.|..+
T Consensus       319 ~~wkG~vi~a~~Ga~V~A~AdG~VvyA~~l~GYG~vvIldhG~  361 (420)
T COG4942         319 LRWKGMVIGASAGATVKAIADGRVVYADWLRGYGLVVILDHGG  361 (420)
T ss_pred             ccccceEEecCCCCeeeeecCceEEechhhccCceEEEEEcCC
Confidence            457777643 223322     2223444455677665554443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=8.8  Score=44.83  Aligned_cols=48  Identities=13%  Similarity=-0.018  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 041911          185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE  232 (624)
Q Consensus       185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e  232 (624)
                      ++.+.+...=.+-.+...+...+..+..+...++..+.++...+....
T Consensus       476 el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~  523 (698)
T KOG0978|consen  476 ELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLE  523 (698)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444455555555555555555555554444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.11  E-value=5.3  Score=42.12  Aligned_cols=26  Identities=12%  Similarity=0.118  Sum_probs=12.2

Q ss_pred             HcHhhhHHHhHhHHHHHHHHHHHHHH
Q 041911          110 QKXIGECNCELHLKENELNSLSESLN  135 (624)
Q Consensus       110 ~~~I~ele~Eie~le~el~~le~~l~  135 (624)
                      ......+...+......+.+++..+.
T Consensus        96 ~~~~~~le~~L~~~~e~v~qLrHeL~  121 (306)
T PF04849_consen   96 SERNEALEEQLGAALEQVEQLRHELS  121 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.08  E-value=11  Score=45.44  Aligned_cols=44  Identities=14%  Similarity=0.193  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911           90 KKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES  133 (624)
Q Consensus        90 ~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~  133 (624)
                      ..+..+..+...++...+.-..-+..+..++..++.+++.+...
T Consensus       181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer  224 (1072)
T KOG0979|consen  181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER  224 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444445555555555555555444

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.06  E-value=5.7  Score=42.22  Aligned_cols=32  Identities=16%  Similarity=0.387  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKV  270 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki  270 (624)
                      ...+..|.+...++..-|.....-+.....++
T Consensus       215 r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Em  246 (309)
T PF09728_consen  215 REQLNLYSEKFEEFQDTLNKSNEVFETFKKEM  246 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33444444444444444444444443333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR00634 recN DNA repair protein RecN

Probab=94.99  E-value=9  Score=44.16  Aligned_cols=38  Identities=18%  Similarity=0.071  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911           95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus        95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      +...+......+..+.........++..+..+++.++.
T Consensus       166 ~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       166 LYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444444444444444444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.83  E-value=0.019  Score=67.89  Aligned_cols=31  Identities=10%  Similarity=-0.019  Sum_probs=23.4

Q ss_pred             CCCCCchhHHH-hhhcCCchhHHHHHHHhcCC
Q 041911          576 GFGDKVPGLQC-SITAEGRSSSSMLVGTSAPT  606 (624)
Q Consensus       576 gl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~  606 (624)
                      +|+..+++.|+ -|...+.|+|.=-+.+..|.
T Consensus       687 ~~~~~~~~~i~~~v~~~~siP~FLaalTlel~  718 (722)
T PF05557_consen  687 EFSPELEDLIEFWVEERNSIPAFLAALTLELF  718 (722)
T ss_dssp             CCHHCTHHHHHHHTTTS--HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence            57788999999 99999999997777666554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.79  E-value=17  Score=46.38  Aligned_cols=93  Identities=12%  Similarity=0.171  Sum_probs=42.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911           40 TVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK------EIKLVFVEKKIEDCNGELECKEKELGLVQ  110 (624)
Q Consensus        40 ~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~------~~e~~~~~~~lee~~~~Le~~e~~l~~l~  110 (624)
                      ..|..-=.++|...+..|.+   -+.+++.++..|..+...+...      ...+.-....+......+......+....
T Consensus       734 ~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~  813 (1353)
T TIGR02680       734 AARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAA  813 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33443334445544444444   4444444444444433333211      11333344444455555555555555555


Q ss_pred             cHhhhHHHhHhHHHHHHHHHHH
Q 041911          111 KXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus       111 ~~I~ele~Eie~le~el~~le~  132 (624)
                      ..+......+.....++...-.
T Consensus       814 ~~l~~a~~~~~~a~~~l~~aaa  835 (1353)
T TIGR02680       814 RKAAAAAAAWKQARRELERDAA  835 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.53  E-value=5.7  Score=39.71  Aligned_cols=39  Identities=28%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041911          241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVES  279 (624)
Q Consensus       241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~  279 (624)
                      ++..++..++-...++.+++..+++...+...+.+=+..
T Consensus       162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe  200 (207)
T PF05010_consen  162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE  200 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.50  E-value=8.9  Score=41.84  Aligned_cols=22  Identities=9%  Similarity=0.176  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 041911          284 LDSMRKQQKKYFDDVELKKREL  305 (624)
Q Consensus       284 l~~~~~e~~~l~kEle~k~~el  305 (624)
                      +.....++......+...+..+
T Consensus       248 l~~~~~~l~~~~~~l~~~~~~l  269 (423)
T TIGR01843       248 LTEAQARLAELRERLNKARDRL  269 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.49  E-value=12  Score=43.44  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=16.1

Q ss_pred             hHHHHhhHHHHhHHHHHHHHhhhhhhHHHHHH
Q 041911          402 GLEDRSQDLEVKEREFEERVKEFELREKEFDS  433 (624)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  433 (624)
                      .|+++..++=...-.+.++|-.+|..--|+-+
T Consensus       418 kLq~~f~~~~~e~adl~e~~e~le~~~~ql~~  449 (617)
T PF15070_consen  418 KLQSRFMDLMEEKADLKERVEKLEHRFIQLSG  449 (617)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            34445554444444555555555555555543

>PRK10869 recombination and repair protein; Provisional

Probab=94.45  E-value=12  Score=43.09  Aligned_cols=61  Identities=15%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH
Q 041911           17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK   81 (624)
Q Consensus        17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~   81 (624)
                      .+|...+    .|+++.||+..+......+-..+..+...+.+   -..+...+++-|+-|..+++..
T Consensus       137 l~~~~~~----~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~  200 (553)
T PRK10869        137 LKPEHQK----TLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF  200 (553)
T ss_pred             cCHHHHH----HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence            5677777    89999999988888888888888888888887   3456666777777776666654

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.28  E-value=0.012  Score=69.36  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHH
Q 041911           35 SVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQRAKEIESKEI   83 (624)
Q Consensus        35 GI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~qa~~~e~~~~   83 (624)
                      ...-|+.+-....+.+.+.+...+.      -...+.-.++-|+..|.++.++..
T Consensus       261 ~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~  315 (713)
T PF05622_consen  261 QRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLEN  315 (713)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3445665555555555555555544      334444555556665555555433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=94.27  E-value=22  Score=45.43  Aligned_cols=19  Identities=16%  Similarity=0.345  Sum_probs=11.0

Q ss_pred             HHHHHHHhHHHHHHHHHHH
Q 041911           60 QSNYVDVKIRLLDQRAKEI   78 (624)
Q Consensus        60 l~~Eie~kl~~L~~qa~~~   78 (624)
                      .+.||+..+..|..+...+
T Consensus       743 ri~el~~~IaeL~~~i~~l  761 (1353)
T TIGR02680       743 RIAELDARLAAVDDELAEL  761 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5566666666666654433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.24  E-value=9.2  Score=40.92  Aligned_cols=25  Identities=24%  Similarity=0.651  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          274 ENEVESLEQKLDSMRKQQKKYFDDV  298 (624)
Q Consensus       274 ekel~~~~~el~~~~~e~~~l~kEl  298 (624)
                      +.++......+.....+...+..++
T Consensus       236 ~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  236 QEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.23  E-value=8.2  Score=40.35  Aligned_cols=69  Identities=14%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911          154 YQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG  222 (624)
Q Consensus       154 ~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~  222 (624)
                      +...-..+..++.....+..+++.++-.....+.++.-.++..+.++...+-++.++..-...-+..+.
T Consensus       142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~  210 (305)
T PF14915_consen  142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN  210 (305)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            333334455555555555555555555566666666666666666666666666555554444443333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.11  E-value=0.35  Score=57.36  Aligned_cols=70  Identities=17%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 041911          154 YQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE  223 (624)
Q Consensus       154 ~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~  223 (624)
                      +..+++.+...+..+...+..+..++..+...+......+.........++.+..-...+++.+...+.+
T Consensus       355 L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s  424 (722)
T PF05557_consen  355 LTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKS  424 (722)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555444444444444444444444433333333333333333333333333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.85  E-value=16  Score=42.20  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=15.9

Q ss_pred             hhhhhhhhHHHHhhHHHHhHHHHHHHHhhh
Q 041911          395 HFDSLKKGLEDRSQDLEVKEREFEERVKEF  424 (624)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (624)
                      .++.....|...+..+...|+.-...+..|
T Consensus       390 ~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~  419 (560)
T PF06160_consen  390 EIEEEQEEINESLQSLRKDEKEAREKLQKL  419 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555566666666665554444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.74  E-value=10  Score=42.77  Aligned_cols=17  Identities=6%  Similarity=0.085  Sum_probs=8.1

Q ss_pred             CHhHHHHHHHHHHHHHH
Q 041911          506 NAQVRDEAMKVAGEWKK  522 (624)
Q Consensus       506 ~~~v~~~A~~lA~~Wk~  522 (624)
                      ++..+..++.--..|=-
T Consensus       465 ~~~~~~~~~~~~~~~~~  481 (498)
T TIGR03007       465 TPEERRRRRRRLAAFLA  481 (498)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            44555455544444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=93.70  E-value=18  Score=42.44  Aligned_cols=73  Identities=12%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911           60 QSNYVDVKIRLLDQRAKEIE----SKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus        60 l~~Eie~kl~~L~~qa~~~e----~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      .+.+++.++..++.|...+.    +++-+...++..+..+..++...+.++......+..+..+++....++..+-.
T Consensus        93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~  169 (1265)
T KOG0976|consen   93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE  169 (1265)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence            44555555555555533331    11223333444444444444444444444444444444444444444433333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.63  E-value=8.4  Score=38.36  Aligned_cols=53  Identities=11%  Similarity=0.169  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911          178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL  230 (624)
Q Consensus       178 eleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~  230 (624)
                      .+..++..+...+..+..+..+++.+...+..+..+...+.........++..
T Consensus        87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ  139 (201)
T PF13851_consen   87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555556666666666666666666666655555555544444444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.49  E-value=0.93  Score=44.79  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=36.8

Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV  298 (624)
Q Consensus       230 ~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEl  298 (624)
                      .....|.....+...+..++.++...+..+.+-.+.+..++..+.-++...+.++...+.++..|+.-+
T Consensus       113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444555555555555555555555555555555555555555566666666666666554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.38  E-value=4.9  Score=36.68  Aligned_cols=49  Identities=12%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE  208 (624)
Q Consensus       160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eie  208 (624)
                      .....++.+..++..+..+...+-.-+.++...++.++.++..++.-+.
T Consensus        65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444555565566666655555554433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.19  E-value=12  Score=38.78  Aligned_cols=77  Identities=19%  Similarity=0.317  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          153 AYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV  229 (624)
Q Consensus       153 ~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~  229 (624)
                      .....+............+++.+..++.++...+.+..+.++..+.++..++.+|+.+...|....+-+......+.
T Consensus        35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555566666666666666666666666666666666666555555555444433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.13  E-value=5.7  Score=36.27  Aligned_cols=55  Identities=15%  Similarity=0.301  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDD  297 (624)
Q Consensus       243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kE  297 (624)
                      .....++..+..++..++..++.+..=++.+..++++++.++...+.-+...+.+
T Consensus        64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~  118 (120)
T PF12325_consen   64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ  118 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666667777777777777777777888888877777777666655543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.03  E-value=26  Score=42.31  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      .....+++.....+....+.......++...+.++......+.++++....+++.++..++.+...|.++.
T Consensus       286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~  356 (1072)
T KOG0979|consen  286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ  356 (1072)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            33344555555555566666666666667777777777777777777777777777777777777777775

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.00  E-value=14  Score=39.22  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                      +..+..+++..|..-...+++-+.-+.-...-+.....++...-+.+..+.+|-...+...+....-|
T Consensus       207 ~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l  274 (309)
T PF09728_consen  207 LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL  274 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.94  E-value=0.15  Score=49.17  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCCCCCChHHHHHHHHHhhh-c----cchHHHHhhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCC
Q 041911          535 LGFLHLLAAYRLAPAFDGEELESLLCIVAQ-H----RQAPKFCQTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQ  608 (624)
Q Consensus       535 ~~fL~lla~ygl~s~fd~~el~~l~~~v~~-~----~~~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~  608 (624)
                      .+.|+.+..|++.+  |...+..++.+.+. +    .-+-..++.||..+  ..+|+ |+.+|++++|++||..++-++.
T Consensus        45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~  120 (167)
T PF07035_consen   45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS  120 (167)
T ss_pred             HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence            46777888888876  45666666655543 2    22445555555443  24667 9999999999999999999999


Q ss_pred             CCCcccchhhhh
Q 041911          609 PVPGPMNLPQYT  620 (624)
Q Consensus       609 f~p~~llk~y~~  620 (624)
                      +||..+|.+=..
T Consensus       121 ~~~~~fLeAA~~  132 (167)
T PF07035_consen  121 VPARKFLEAAAN  132 (167)
T ss_pred             CCHHHHHHHHHH
Confidence            999887765433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.90  E-value=14  Score=38.96  Aligned_cols=13  Identities=8%  Similarity=0.138  Sum_probs=7.6

Q ss_pred             cchHhhhhhHHHH
Q 041911           17 SKKETLRRSFDMA   29 (624)
Q Consensus        17 ~k~~~~r~~~~~l   29 (624)
                      +-|....-+|+++
T Consensus        35 ls~~~~~~~l~y~   47 (306)
T PF04849_consen   35 LSPEQIEETLRYF   47 (306)
T ss_pred             CCHHHHHHHHHHH
Confidence            4555555566666

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.64  E-value=1.7  Score=42.84  Aligned_cols=71  Identities=21%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          220 SYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ  290 (624)
Q Consensus       220 ~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e  290 (624)
                      .+..+...+.....++.....++..+..-+..+..++.++.-++..+..++..++.+-..+-.++.....+
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~  187 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ  187 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444555555555555555555555555666666665555544433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK10869 recombination and repair protein; Provisional

Probab=92.50  E-value=24  Score=40.61  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911           97 GELECKEKELGLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus        97 ~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      ..+.....++..+.....+...++.-++-+++.++.
T Consensus       164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~  199 (553)
T PRK10869        164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE  199 (553)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            333334444444444444444444445555555444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.45  E-value=5.1  Score=41.21  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             cCCCCCHhHHHHHHHHHHHHHHhhh
Q 041911          501 VAPEINAQVRDEAMKVAGEWKKKMR  525 (624)
Q Consensus       501 ~~p~~~~~v~~~A~~lA~~Wk~~~~  525 (624)
                      .+|..+++..+..+..-.+.+++|.
T Consensus       271 ~~~s~~s~l~dQLK~qNQEL~ski~  295 (307)
T PF10481_consen  271 FSNSSSSQLLDQLKAQNQELRSKIN  295 (307)
T ss_pred             CCCCCchHHHHHHHHHhHHHHHHHH
Confidence            3667788888888888888888874

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.29  E-value=7.8  Score=42.06  Aligned_cols=27  Identities=4%  Similarity=0.233  Sum_probs=16.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911          248 SIKELSVKFHSEEEKLELLHRKVRLHE  274 (624)
Q Consensus       248 ql~el~~eL~~~e~eleq~~~ki~~~e  274 (624)
                      -+-.++.-+..+.+++.++..+|+-++
T Consensus       329 Plv~IKqAl~kLk~EI~qMdvrIGVle  355 (359)
T PF10498_consen  329 PLVKIKQALTKLKQEIKQMDVRIGVLE  355 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence            334455556666777777777776544

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK11281 hypothetical protein; Provisional

Probab=92.28  E-value=38  Score=42.28  Aligned_cols=27  Identities=22%  Similarity=0.216  Sum_probs=12.7

Q ss_pred             hhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911           33 ANSVLLFTVQWKDLEEHFDLTKKSLEK   59 (624)
Q Consensus        33 AAGI~~y~~rk~eA~k~L~~te~nL~r   59 (624)
                      +++...-+...+.+...+..|-..++.
T Consensus        48 ~~~~~~~~~~~k~~~~~l~~tL~~L~q   74 (1113)
T PRK11281         48 LNKQKLLEAEDKLVQQDLEQTLALLDK   74 (1113)
T ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence            444333333344455555555555554

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.24  E-value=24  Score=39.86  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          252 LSVKFHSEEEKLELLHRKVRLHENEVESLEQKLD---SMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       252 l~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~---~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                      +...+...+.++..+..++..+..++...+.++.   ..+.++..+..+++..+..++.....+
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~  378 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR  378 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555555555544444444433   445566666666666666666555554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.95  E-value=21  Score=42.57  Aligned_cols=53  Identities=8%  Similarity=0.034  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          261 EKLELLHRKVRLHENEVESLEQKLD---SMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       261 ~eleq~~~ki~~~ekel~~~~~el~---~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      .++.........++.++...+.++.   ..+.++..+..+.+..+.-++.+....+
T Consensus       345 ~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~  400 (754)
T TIGR01005       345 MQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYR  400 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444433333332   3345555666666666666665555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=91.84  E-value=31  Score=40.29  Aligned_cols=15  Identities=7%  Similarity=0.171  Sum_probs=8.4

Q ss_pred             HHHHHHHhHHHHHHH
Q 041911           60 QSNYVDVKIRLLDQR   74 (624)
Q Consensus        60 l~~Eie~kl~~L~~q   74 (624)
                      -+.+++.+|..|+.+
T Consensus        51 ~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen   51 RVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            455555555555555

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.70  E-value=21  Score=38.16  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=10.1

Q ss_pred             HHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911          108 LVQKXIGECNCELHLKENELNSLSES  133 (624)
Q Consensus       108 ~l~~~I~ele~Eie~le~el~~le~~  133 (624)
                      -+......+...+..+..+...+...
T Consensus       146 ll~gl~~~L~~~~~~L~~D~~~L~~~  171 (325)
T PF08317_consen  146 LLEGLKEGLEENLELLQEDYAKLDKQ  171 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444443333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=91.25  E-value=26  Score=38.24  Aligned_cols=29  Identities=10%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          285 DSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       285 ~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      .....+......++...+.++...+..+.
T Consensus       242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  270 (423)
T TIGR01843       242 EEVLEELTEAQARLAELRERLNKARDRLQ  270 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34456667777777777777777777665

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=90.97  E-value=38  Score=39.76  Aligned_cols=131  Identities=9%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Q 041911          170 DEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSI  249 (624)
Q Consensus       170 kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql  249 (624)
                      .+++.+...++.++.++..+-.++.......-.+-............+.+....+...+.............++.+++++
T Consensus       454 ~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~  533 (698)
T KOG0978|consen  454 SEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE  533 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444443333333333333444444444444444444444333333444444444444


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          250 KELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL  300 (624)
Q Consensus       250 ~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~  300 (624)
                      .-+......+..++......+....+........+...+-++......++-
T Consensus       534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~  584 (698)
T KOG0978|consen  534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ  584 (698)
T ss_pred             HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433333333333333333333333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.82  E-value=11  Score=38.86  Aligned_cols=33  Identities=30%  Similarity=0.330  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          279 SLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       279 ~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      ..+..+.+.+++++.+..++...+.+++.-+..
T Consensus        99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333344444444444444444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.56  E-value=41  Score=40.13  Aligned_cols=29  Identities=10%  Similarity=0.300  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          272 LHENEVESLEQKLDSMRKQQKKYFDDVEL  300 (624)
Q Consensus       272 ~~ekel~~~~~el~~~~~e~~~l~kEle~  300 (624)
                      ..+.++.+++.+.+..+.-+..++..++.
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e  401 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQ  401 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666666665555544

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK12704 phosphodiesterase; Provisional

Probab=90.46  E-value=19  Score=41.24  Aligned_cols=8  Identities=50%  Similarity=0.584  Sum_probs=3.6

Q ss_pred             HHHHHHhh
Q 041911          491 CILLLEQL  498 (624)
Q Consensus       491 cilLLe~l  498 (624)
                      -..-|+.|
T Consensus       266 a~~~l~~l  273 (520)
T PRK12704        266 ARLALEKL  273 (520)
T ss_pred             HHHHHHHH
Confidence            33444444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.12  E-value=33  Score=40.81  Aligned_cols=31  Identities=10%  Similarity=0.225  Sum_probs=18.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 041911          246 QSSIKELSVKFHSEEEKLELLHRKVRLHENE  276 (624)
Q Consensus       246 e~ql~el~~eL~~~e~eleq~~~ki~~~eke  276 (624)
                      ..|...++.-|.....+++++.++|+++.+.
T Consensus       684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3555566666666666666666666655544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.09  E-value=22  Score=35.47  Aligned_cols=46  Identities=22%  Similarity=0.177  Sum_probs=20.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911          156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNIS  201 (624)
Q Consensus       156 ~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e  201 (624)
                      ..+......+....+++..+.-+.+.+...+...+.+.+.+...+.
T Consensus        86 ~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen   86 QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444443

>PRK00106 hypothetical protein; Provisional

Probab=89.60  E-value=14  Score=42.20  Aligned_cols=12  Identities=25%  Similarity=0.232  Sum_probs=6.4

Q ss_pred             HHHHHHHHhhhh
Q 041911          489 RSCILLLEQLST  500 (624)
Q Consensus       489 ~~cilLLe~l~~  500 (624)
                      ..--.-|+.|..
T Consensus       279 eiAr~~le~Li~  290 (535)
T PRK00106        279 EIARMTLESLIK  290 (535)
T ss_pred             HHHHHHHHHHHH
Confidence            335555666653

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=89.00  E-value=58  Score=38.95  Aligned_cols=167  Identities=23%  Similarity=0.263  Sum_probs=87.3

Q ss_pred             HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHH
Q 041911          162 KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKE  241 (624)
Q Consensus       162 ~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~e  241 (624)
                      .....+...+++.+......++..+.....++...+..+......+..++.++....+.-....+++......+......
T Consensus       588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~  667 (769)
T PF05911_consen  588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR  667 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33334444455555555555555555555566666666666666666666666666666666666655554444444444


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHh
Q 041911          242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY---FDDVELKKR-ELNEIRKYIEELSQ  317 (624)
Q Consensus       242 l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l---~kEle~k~~-ele~~~kele~~~~  317 (624)
                      +...+..+..+..++..++.+++.-..--.....++...+.++.+........   ..++..++. ++-..-..|.++.+
T Consensus       668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQe  747 (769)
T PF05911_consen  668 LKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQE  747 (769)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555544444444455555555555554432111   222233322 44444455556666


Q ss_pred             hhhhHHhhhHH
Q 041911          318 DLASKDKQLKF  328 (624)
Q Consensus       318 el~sk~~~~~~  328 (624)
                      =+.+--||+++
T Consensus       748 TI~sLGkQLks  758 (769)
T PF05911_consen  748 TIASLGKQLKS  758 (769)
T ss_pred             HHHHHHHHHHh
Confidence            66666666654

The function of this family is unknown.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.80  E-value=32  Score=35.65  Aligned_cols=9  Identities=0%  Similarity=-0.027  Sum_probs=4.4

Q ss_pred             hHHHHhhhC
Q 041911          448 QFFDTVKRA  456 (624)
Q Consensus       448 e~~~Al~~a  456 (624)
                      ++.+||...
T Consensus       196 ~isaALgyv  204 (302)
T PF10186_consen  196 EISAALGYV  204 (302)
T ss_pred             HHHHHHHHH
Confidence            444555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=88.70  E-value=43  Score=37.06  Aligned_cols=26  Identities=12%  Similarity=0.135  Sum_probs=10.9

Q ss_pred             HHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911          107 GLVQKXIGECNCELHLKENELNSLSE  132 (624)
Q Consensus       107 ~~l~~~I~ele~Eie~le~el~~le~  132 (624)
                      .-+..++..++.++...+..+...+.
T Consensus       174 ~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       174 LWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.18  E-value=27  Score=39.86  Aligned_cols=9  Identities=33%  Similarity=0.408  Sum_probs=4.7

Q ss_pred             HHHHHHhhh
Q 041911          491 CILLLEQLS  499 (624)
Q Consensus       491 cilLLe~l~  499 (624)
                      --+-|+.|.
T Consensus       260 a~~~l~~li  268 (514)
T TIGR03319       260 ARMALEKLI  268 (514)
T ss_pred             HHHHHHHHH
Confidence            445555554

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=87.09  E-value=46  Score=35.54  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          263 LELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE  299 (624)
Q Consensus       263 leq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle  299 (624)
                      ++.+.++-..+..++...+.+...++..+..+-.=++
T Consensus       191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555544444444

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.09  E-value=34  Score=34.05  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911          156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC  231 (624)
Q Consensus       156 ~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~  231 (624)
                      .++.++..++.+...++.....+|-.+...+.+....+.........+.........+++..+.+++....++...
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL   85 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELL   85 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh
Confidence            3455666666666666666666666666666665555555555555555555555555555555555444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=87.00  E-value=42  Score=36.52  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=13.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041911          159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREK  191 (624)
Q Consensus       159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~  191 (624)
                      ..+.+.+++....++.+..++...-..|...++
T Consensus       230 ~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk  262 (359)
T PF10498_consen  230 KSIESALPETKSQLDKLQQDISKTLEKIESREK  262 (359)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444433333333333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.84  E-value=70  Score=37.37  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=23.9

Q ss_pred             hHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhH
Q 041911          408 QDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK  443 (624)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~  443 (624)
                      +++++.++.+...--=|..+-.+|...|.++--|.-
T Consensus       607 ~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gyki  642 (716)
T KOG4593|consen  607 KEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKI  642 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            456666666655444478888888888888655543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.79  E-value=28  Score=32.73  Aligned_cols=66  Identities=21%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 041911          246 QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQ----KKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       246 e~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~----~~l~kEle~k~~ele~~~ke  311 (624)
                      ..++.++..++..+.....++...+.++...++....++.+.+..+    ..+..|+..++.+++.++..
T Consensus        79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~r  148 (151)
T PF11559_consen   79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444444444443333222    34445555555555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=85.99  E-value=52  Score=35.12  Aligned_cols=53  Identities=15%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          261 EKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       261 ~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      .+.+.+...++-+..++...+.++.+.-.+-+++..|.+..+..+..++.++.
T Consensus       126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn  178 (319)
T PF09789_consen  126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN  178 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666667777888888888888888889999999999999998888876

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=85.39  E-value=66  Score=35.77  Aligned_cols=28  Identities=14%  Similarity=0.221  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          284 LDSMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       284 l~~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      |..++++-+.+..++=+.+.+|+..+++
T Consensus       480 LdlLkrEKe~~EqefLslqeEfQk~eke  507 (527)
T PF15066_consen  480 LDLLKREKETREQEFLSLQEEFQKHEKE  507 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444444444444444

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.28  E-value=15  Score=39.23  Aligned_cols=10  Identities=30%  Similarity=0.428  Sum_probs=6.3

Q ss_pred             HHHHHHHHhh
Q 041911          489 RSCILLLEQL  498 (624)
Q Consensus       489 ~~cilLLe~l  498 (624)
                      .||-++|-.|
T Consensus       292 ~AlK~lLtnl  301 (314)
T PF04111_consen  292 KALKYLLTNL  301 (314)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4577776655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=85.23  E-value=49  Score=38.03  Aligned_cols=35  Identities=20%  Similarity=0.083  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE  307 (624)
Q Consensus       273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~  307 (624)
                      ...+--.++..+++.+.++..+...+..|..+...
T Consensus       222 ~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r  256 (861)
T KOG1899|consen  222 VVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR  256 (861)
T ss_pred             HHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence            33333344444444444444444444444443333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.10  E-value=14  Score=42.28  Aligned_cols=50  Identities=22%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911           85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL  134 (624)
Q Consensus        85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l  134 (624)
                      ...+...+..+...++.++.+...++..+.+++.+++.++.++..+...+
T Consensus       417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~  466 (652)
T COG2433         417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV  466 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666666666666666666666666666665554

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.73  E-value=62  Score=34.88  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911           43 WKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIE   79 (624)
Q Consensus        43 k~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e   79 (624)
                      -...+.+|..|...+..+-.++..+-..|.....+++
T Consensus         3 l~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e   39 (344)
T PF12777_consen    3 LENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAE   39 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666644444333333333333333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.33  E-value=19  Score=41.23  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          101 CKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSV  144 (624)
Q Consensus       101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el  144 (624)
                      .....+..+...+..++.+++.++..+..++..+..+..+|..+
T Consensus       419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~  462 (652)
T COG2433         419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF  462 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444443333334333

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.97  E-value=76  Score=35.76  Aligned_cols=50  Identities=10%  Similarity=0.078  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHhhHHhHHHHhhhCCChhhHH
Q 041911          414 EREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLV  463 (624)
Q Consensus       414 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~e~~~Al~~a~dPa~lV  463 (624)
                      .++..+-|..+.-...|...+|..++-.-.+-++..+.+.+..+--++|+
T Consensus       356 q~~I~e~ve~i~~ts~q~a~l~~~l~i~~~ny~~~~~tv~~~~v~tp~lq  405 (596)
T KOG4360|consen  356 QKRIFETVEQINETSQQMAELPEVLVIPGSNYSSQQQTVARLQVQTPKLQ  405 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhccchhHH
Confidence            34455556667777888888888865555555555555555444444433

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=83.93  E-value=1.3e+02  Score=37.92  Aligned_cols=48  Identities=13%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 041911          207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSV  254 (624)
Q Consensus       207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~  254 (624)
                      +......+....+.+.++++++......+.....++........++..
T Consensus       402 ~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~  449 (1294)
T KOG0962|consen  402 FGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKK  449 (1294)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555666666555555454444444444333333333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=83.83  E-value=84  Score=35.68  Aligned_cols=47  Identities=21%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             HhhhhhHHhhhHHHHhhhhhhhHHHHHHHHHhhHhHHHHHHhhHHHH
Q 041911          316 SQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVE  362 (624)
Q Consensus       316 ~~el~sk~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~e  362 (624)
                      .++|+|-++.+..+-..++....-+...+..++++.+.+..+.++-+
T Consensus       353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~  399 (570)
T COG4477         353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE  399 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34444444455444444444444444455555555555544444333

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=83.71  E-value=76  Score=35.10  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          286 SMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       286 ~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                      ....++..+..+++..+..++.+-..+
T Consensus       339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       339 RQRDEMSVLQRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666666666666665555443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.28  E-value=20  Score=38.29  Aligned_cols=14  Identities=14%  Similarity=0.332  Sum_probs=8.3

Q ss_pred             HhHHHHHHHHHhhh
Q 041911          486 IIRRSCILLLEQLS  499 (624)
Q Consensus       486 ~~r~~cilLLe~l~  499 (624)
                      ....+++.+|.|+.
T Consensus       237 ~Fd~am~~~L~~~~  250 (314)
T PF04111_consen  237 KFDKAMVAFLDCLQ  250 (314)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH
Confidence            34456666666664

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.67  E-value=1.1e+02  Score=36.28  Aligned_cols=142  Identities=19%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 041911           85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLN-IKKEELSSVEEWINKCQAYQKELQLL--  161 (624)
Q Consensus        85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~-~k~~eL~el~e~~~eL~~~~~~l~~~--  161 (624)
                      +..++..+..+...+.....+.+++.....++....+.++.+...++..+. .+..+.    .++.++..+..+--.+  
T Consensus        36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~----rll~dyselEeENislQK  111 (717)
T PF09730_consen   36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA----RLLQDYSELEEENISLQK  111 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHH
Confidence            334444444445555555555555555555555555555555555555541 111111    1222222222222222  


Q ss_pred             -HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911          162 -KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL  230 (624)
Q Consensus       162 -~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~  230 (624)
                       -+.+.+-+-+++.+..++..++.++.-+..++++...-.+-+..++++.-..+..-.++-..+..++..
T Consensus       112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~  181 (717)
T PF09730_consen  112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ  181 (717)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222333334566677777777777777666666665555555555555444444444444455554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK12705 hypothetical protein; Provisional

Probab=81.67  E-value=1e+02  Score=35.15  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHHHHHHhhh
Q 041911          488 RRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMR  525 (624)
Q Consensus       488 r~~cilLLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~~  525 (624)
                      |..-.+-|+.|...++-.+..+-+-+..+-..+-..+.
T Consensus       251 reia~~~l~~Li~dgri~p~rIeevv~~~~~~~~~~i~  288 (508)
T PRK12705        251 REIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIY  288 (508)
T ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence            44455566666655554444454444444444544443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=81.39  E-value=1.5e+02  Score=36.96  Aligned_cols=293  Identities=10%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             hhhccchHhhhhhHHHHHHhhhhhhhh-------HhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHH
Q 041911           13 RVAESKKETLRRSFDMAHSQANSVLLF-------TVQWKDLEEHFDLTKKSLEK-------QSNYVDVKIRLLDQRAKEI   78 (624)
Q Consensus        13 ~~~~~k~~~~r~~~~~liEEAAGI~~y-------~~rk~eA~k~L~~te~nL~r-------l~~Eie~kl~~L~~qa~~~   78 (624)
                      .+..+++.+.+    .|+++..||..|       ..+..++...+...+..+..       -..++...+..+..+....
T Consensus       160 ~fl~a~~~eR~----~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~  235 (1047)
T PRK10246        160 AFLNAKPKERA----ELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQL  235 (1047)
T ss_pred             HHHhCChHHHH----HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 041911           79 ESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES--LNIKKEELSSVEEWINKCQAYQK  156 (624)
Q Consensus        79 e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~--l~~k~~eL~el~e~~~eL~~~~~  156 (624)
                      ......+......+.....-..    .+.........+.............+...  ......-+..+......+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~  311 (1047)
T PRK10246        236 LTAQQQQQQSLNWLTRLDELQQ----EASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQ  311 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911          157 ELQLLKNLIKECCDEIELRE----KKVGEVQRSIEEREKQLAYKQRNISSIQT--LIEDYEEVLRDKEKSYGEVKKSLVL  230 (624)
Q Consensus       157 ~l~~~~~~ieE~~kele~le----keleele~~Ieeke~el~~lq~e~e~l~~--eieel~eele~kEe~l~~l~~~I~~  230 (624)
                      .+......+...........    .........+......+.....-......  ........+......+..+...+..
T Consensus       312 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~  391 (1047)
T PRK10246        312 QIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTSDREQLRQWQQQLTH  391 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hHHhhHHHHHHHH-HHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          231 CETKLEREKKELE-LTQSSIKELSVKFHSEE---EKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN  306 (624)
Q Consensus       231 ~e~~ie~~~~el~-~le~ql~el~~eL~~~e---~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele  306 (624)
                      ....+........ ............+....   ..+.............+.....++.............++....++.
T Consensus       392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  471 (1047)
T PRK10246        392 AEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYK  471 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHH
Q 041911          307 EIRKYIE  313 (624)
Q Consensus       307 ~~~kele  313 (624)
                      .....+.
T Consensus       472 ~~~~~~~  478 (1047)
T PRK10246        472 EKTQQLA  478 (1047)
T ss_pred             HHHHHHH

>PRK11281 hypothetical protein; Provisional

Probab=80.76  E-value=1.6e+02  Score=36.89  Aligned_cols=12  Identities=0%  Similarity=-0.047  Sum_probs=5.7

Q ss_pred             CCCHhHHHHHHH
Q 041911          504 EINAQVRDEAMK  515 (624)
Q Consensus       504 ~~~~~v~~~A~~  515 (624)
                      ..++.....+++
T Consensus       610 ~w~~~~~~~~~~  621 (1113)
T PRK11281        610 GMPKEQVSHFRR  621 (1113)
T ss_pred             CCCHHHHHHHHH
Confidence            345555444444

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=80.73  E-value=73  Score=32.86  Aligned_cols=34  Identities=12%  Similarity=0.158  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911          241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE  274 (624)
Q Consensus       241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~e  274 (624)
                      .+..|..++.++..-|..+.....+...--.+-.
T Consensus       186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~  219 (264)
T PF06008_consen  186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ  219 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444433333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.34  E-value=1e+02  Score=34.41  Aligned_cols=27  Identities=7%  Similarity=0.191  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          279 SLEQKLDSMRKQQKKYFDDVELKKREL  305 (624)
Q Consensus       279 ~~~~el~~~~~e~~~l~kEle~k~~el  305 (624)
                      ....++...+.++......+...+..+
T Consensus       288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l  314 (457)
T TIGR01000       288 KVKQEITDLNQKLLELESKIKSLKEDS  314 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555544444

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	624
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	2e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	3e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-04
3iyd_F	613	RNA polymerase sigma factor RPOD; transcription, i	2e-04
1cii_A	602	Colicin IA; bacteriocin, ION channel formation, tr	3e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	5e-04
1sig_A	339	Sigma70, RNA polymerase primary sigma factor; RNA	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 45/315 (14%), Positives = 129/315 (40%), Gaps = 21/315 (6%)

Query: 155  QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVL 214
            ++E+Q     ++   +  +  E ++ E+++   +  ++    Q  + +   L  + EE+ 
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 215  RDKEKSYGEVKKSLVLCETKLERE---------------------KKELELTQSSIKELS 253
                    E+++ L   E ++E E                     +++LE  +++ ++L 
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975

Query: 254  VKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313
            ++  + + K++ +   + + E++   L ++   + ++      ++  ++ +   + K   
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 314  ELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQH 373
            +    ++  + +LK  ++S ++  K  +  + E S + + IAE   ++   K QL   + 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 374  ESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDS 433
            E      R      +     K    L+  + D  +DLE ++    +  K+     +E ++
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 434  IRKAVEDHSKNLLLQ 448
            ++  +ED       Q
Sbjct: 1156 LKTELEDTLDTTATQ 1170

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.4 bits (201), Expect = 4e-16
 Identities = 54/330 (16%), Positives = 133/330 (40%), Gaps = 4/330 (1%)

Query: 67   KIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENE 126
            +   +  + +E++  + +    E ++++   +     +E  L+Q+ +          E  
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 127  LNSLSESLNIKKEELSSVEEWI----NKCQAYQKELQLLKNLIKECCDEIELREKKVGEV 182
               L+      +E L  +E  I     + Q  Q E + ++  + +  +++E  E    ++
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 183  QRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKEL 242
            Q      + ++   + +I  ++       +  +  E+   ++  +L   E K +   K  
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 243  ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKK 302
               +S I EL V+   EE+  + L +  R  E E   L +++  ++ Q  +    +  K+
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 303  RELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVE 362
             EL      +E+ +    +  K+++ ++  I D  ++ + +K   +  EK   + S+E+E
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 363  LKKNQLNLVQHESNLVQTRTIGYLKEFKEK 392
              K +L      +   Q       K+  +K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.0 bits (200), Expect = 5e-16
 Identities = 55/339 (16%), Positives = 140/339 (41%), Gaps = 10/339 (2%)

Query: 102  KEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLL 161
            +E+E+    + +          E EL  L +      EE + ++E +        E + +
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 162  KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSY 221
            +  +     E    E+ + E++  IEE E++    Q     +Q  + D EE L ++E + 
Sbjct: 915  RVRLAAKKQE---LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971

Query: 222  GEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLE 281
             +++   V  + K+++ + ++ + +    +L+     E + LE     +      +   E
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLT----KERKLLEERVSDL---TTNLAEEE 1024

Query: 282  QKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQ 341
            +K  ++ K + K+   +   +  L +  K  +EL +     + +   + + I +   +  
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 342  WKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKK 401
              K +L+  E+ +      +E + +Q N    +   +++      ++ + ++   +  +K
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 402  GLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVED 440
               D S++LE  + E E+ +     +++   S  K  +D
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 42/315 (13%), Positives = 122/315 (38%), Gaps = 20/315 (6%)

Query: 148  INKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLI 207
            I       ++ + ++   +E     E ++K   E++   ++  +    K      +Q  +
Sbjct: 846  IXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL----LQEKL 901

Query: 208  EDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLH 267
            +   E+  + E+              +L  +K+ELE     + E+  +   EEE+ + L 
Sbjct: 902  QAETELYAEAEE-----------MRVRLAAKKQELE---EILHEMEARIEEEEERSQQLQ 947

Query: 268  RKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLK 327
             + +  + ++  LE++L+     ++K   +      ++ ++   I  +        K+ K
Sbjct: 948  AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007

Query: 328  FVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLK 387
             +++ + D +     ++++  ++ K   +    +   + +L   +     ++        
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 388  EFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNL-- 445
            E  +  +    L+  + +    L  KE E +  +   E    + ++  K + +   ++  
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127

Query: 446  LLQFFDTVKRARDPA 460
            L +  ++ K AR+ A
Sbjct: 1128 LQEDLESEKAARNKA 1142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 8e-14
 Identities = 61/461 (13%), Positives = 134/461 (29%), Gaps = 120/461 (26%)

Query: 16  ESKKETLRRSFDMAHSQANSVL-LFTVQWKDLEEHFDLTKKSL--EKQSNYVDVKIRLLD 72
            S +  LRR    +    N +L L  VQ       F+L+ K L   +     D    L  
Sbjct: 228 HSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF---LSA 283

Query: 73  QRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132
                I      +                 ++   L                     L +
Sbjct: 284 ATTTHISLDHHSMTLTP-------------DEVKSL---------------------LLK 309

Query: 133 SLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQ 192
            L+ + ++L       N             ++I E      +R+                
Sbjct: 310 YLDCRPQDLPREVLTTNP---------RRLSIIAE-----SIRDGL---------ATWDN 346

Query: 193 LAYKQRNISSIQTLIEDYEEVLRDKE--KSYGE-------VK-KSLVLCE--TKLEREKK 240
             +K  N   + T+IE    VL   E  K +             +++L      + +   
Sbjct: 347 --WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 241 ELELTQSSIKELSVKFHSEEEKLEL--LHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV 298
            + + +     L  K   +E  + +  ++ ++++      +L + +       K +  D 
Sbjct: 405 MVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 299 ELKKRELNEIRKYI----EELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
            +          +I    + +         ++ F+         +F++       +E+ I
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---------DFRF-------LEQKI 507

Query: 355 AECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKE 414
              S       + LN +Q      Q +   Y     + +  ++ L   + D         
Sbjct: 508 RHDSTAWNASGSILNTLQ------QLKF--YKPYICDNDPKYERLVNAILD--------- 550

Query: 415 REFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKR 455
             F  +++E  +  K  D +R A+    + +  +    V+R
Sbjct: 551 --FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 4e-12
 Identities = 90/551 (16%), Positives = 180/551 (32%), Gaps = 136/551 (24%)

Query: 49  HFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKE--- 105
           H D   ++ E Q  Y                 K+I  VF +  +++     +CK+ +   
Sbjct: 6   HMDF--ETGEHQYQY-----------------KDILSVFEDAFVDN----FDCKDVQDMP 42

Query: 106 LGLVQKXIGECNCELHLKENELNS--LSESLNIKKEELSSVEEWINKCQAYQKELQLLKN 163
             ++ K   E +  +  K+    +  L  +L  K+EE+  V++++   +  +   + L +
Sbjct: 43  KSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVE--EVLRINYKFLMS 96

Query: 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSY-- 221
            IK    +  +  +   E QR     + Q+ + + N+S +Q  ++  + +L  +      
Sbjct: 97  PIKTEQRQPSMMTRMYIE-QRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 222 -----GEVKKSLVL--CETKLEREKKELELTQSSIKELSV-KFHSEEEKLELLHRKVRLH 273
                G  K  + L  C        K        I  L++   +S E  LE+L    +L 
Sbjct: 155 IDGVLGSGKTWVALDVC-----LSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLL 206

Query: 274 ENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSI 333
                +   + D      K     ++ + R L + + Y   L   L   +     VQ + 
Sbjct: 207 YQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCL---LVLLN-----VQNA- 256

Query: 334 EDCSKEFQWKKKEL------SSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLK 387
                 F    K L         +   A  +  + L  + + L   E            K
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----------K 304

Query: 388 EFKEKEKHFDSLKKGLEDRSQDL--EVKERE------FEERVKEFELREKEFDSIRKAVE 439
                      L K L+ R QDL  EV            E +++                
Sbjct: 305 SL---------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--------------L 341

Query: 440 DHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSRE--GDLE-F--DVSI-IRRSCIL 493
               N      D +    + +L VL       P   R+    L  F     I      ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVL------EPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 494 LLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAV-------ENSLEVLGFLH--LLAAY 544
             + + +    +  ++   ++    +  K+  +++       +  LE    LH  ++  Y
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 545 RLAPAFDGEEL 555
            +   FD ++L
Sbjct: 454 NIPKTFDSDDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 3e-11
 Identities = 57/441 (12%), Positives = 130/441 (29%), Gaps = 128/441 (29%)

Query: 192 QLAYKQRNISSI--QTLIEDYE---------EVLRDKE-----KSYGEVKKSLVLCETKL 235
           +  Y+ ++I S+     +++++          +L  +E      S   V  +L L  T  
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-- 70

Query: 236 EREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYF 295
                 L   Q  + +  V+        + L   ++  + +   + +     R    + +
Sbjct: 71  ------LLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLY 120

Query: 296 DDVEL-------KKRELNEIRKYIEELSQD---------------LAS---KDKQLKFVQ 330
           +D ++       + +   ++R+ + EL                  +A       +++   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ--- 177

Query: 331 QSIEDCSKEFQ--WKKKELSSIEKTIAECSKEVELKKNQLNL-VQHESNLVQTRTIGYLK 387
                C  +F+  W       +   +  C+    + +    L  Q + N           
Sbjct: 178 -----CKMDFKIFW-------L--NLKNCNSPETVLEMLQKLLYQIDPNWTS-------- 215

Query: 388 EFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEF-------DSIR----- 435
                            D S +++++    +  ++   L+ K +        +++     
Sbjct: 216 ---------------RSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 436 KAVEDHSKNLLL----QFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSC 491
            A     K LL     Q  D +  A    + + H      P           +  +    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLDCRP 315

Query: 492 ILLLEQLSTVAPE----INAQVRDEAMKVAGEWK----KKMRVAVENSLEVLGFLHLLAA 543
             L  ++ T  P     I   +RD        WK     K+   +E+SL VL        
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 544 YRLAPAFDGEEL--ESLLCIV 562
           +     F         LL ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 44/288 (15%), Positives = 87/288 (30%), Gaps = 58/288 (20%)

Query: 8   ISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVK 67
           I+E +R   +  +  +       +      L       LE          E +  +  + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVLE--------PAEYRKMFDRLS 379

Query: 68  IRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENEL 127
           +      A  I +  + L++ +    D    +  K  +  LV+K   E    +       
Sbjct: 380 V--FPPSAH-IPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIP------ 429

Query: 128 NSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKN-LIKECCD------------EIEL 174
            S+   L +K E   ++   I     Y        + LI    D             IE 
Sbjct: 430 -SIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 175 REKKVGEVQ-----RSIEEREKQLAYKQRNISSIQTLIED---YEEVLRDKEKSY----G 222
            E+           R +E++ +  +       SI   ++    Y+  + D +  Y     
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 223 EVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKV 270
            +   L   E  L    K  +L + ++         +E   E  H++V
Sbjct: 547 AILDFLPKIEENLICS-KYTDLLRIAL------MAEDEAIFEEAHKQV 587

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 39/283 (13%), Positives = 93/283 (32%), Gaps = 20/283 (7%)

Query: 145  EEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQ 204
                   Q +Q+   + K         I L+    G + R+  +   +    +     IQ
Sbjct: 816  TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLR----EHKSIIIQ 871

Query: 205  TLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLE 264
              +  +   +         V           +RE K+L++   S++         E K+ 
Sbjct: 872  KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931

Query: 265  LLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDK 324
             L RK+     E +SL +K++++        + +      L    +  +  +  + S  +
Sbjct: 932  QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991

Query: 325  QLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIG 384
            ++  +++ +     E +  ++     +    +     ELK+    L   +  L       
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQ--LVSELKEQNTLLKTEKEEL------- 1042

Query: 385  YLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELR 427
                     +  D  K+  E   + L  + ++ E  + +  LR
Sbjct: 1043 -------NRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 44/262 (16%), Positives = 107/262 (40%), Gaps = 16/262 (6%)

Query: 177  KKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYE------EVLRDKEKSYGEVKKSLVL 230
              + + QR    R++    +   I+ +Q L+  Y        +LR+ +    +      L
Sbjct: 820  IIIQKFQRMYVVRKRYQCMRDATIA-LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWL 878

Query: 231  CETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290
                  R  K +   Q   + +  K   E +KL++  R V  ++     LE K+  ++++
Sbjct: 879  ARVHYHRTLKAIVYLQCCYRRMMAK--RELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936

Query: 291  QKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSI 350
                   ++ + +E   + + +  L    +++ ++L+   + +    +E +     + S+
Sbjct: 937  -------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 351  EKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDL 410
            ++ IA+  KE+   + +   ++  ++  +  T   + E KE+     + K+ L  R  D 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 411  EVKEREFEERVKEFELREKEFD 432
              +  E  E+    E ++ E D
Sbjct: 1050 AKEITETMEKKLVEETKQLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 28/254 (11%)

Query: 145  EEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQ--RNISS 202
            + +     A      LL+  +     ++ LRE K   +Q+ +     ++ Y +  + I  
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 203  IQTLIEDY-----EEVLRDKEKSYGEVKKSLVLCETK----------LEREKKELELT-- 245
            +Q            + L+ + +S    KK  +  E K            +E K L     
Sbjct: 893  LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952

Query: 246  --QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303
              + +    + K  S+ E+L +   + +   N V SL++++  +RK+       +   + 
Sbjct: 953  NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE-------LHQTQT 1005

Query: 304  ELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVEL 363
            E   I ++ ++   +      +LK     ++   +E   +  + +       E     E 
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065

Query: 364  KKNQLNLVQHESNL 377
            K+ +L+L       
Sbjct: 1066 KQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 34/238 (14%), Positives = 84/238 (35%), Gaps = 16/238 (6%)

Query: 39   FTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGE 98
            + V+ K      +     ++K       ++         +  +      + K+      +
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELK---K 908

Query: 99   LECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINK----CQAY 154
            L+ + + +   +    + +  L   EN++  L   ++ + +E  S+ E +N         
Sbjct: 909  LKIEARSVERYK----KLHIGL---ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 155  QKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVL 214
             ++L+     ++   +E +    +V  +Q  I +  K+L   Q    +I+   + Y+   
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 215  RDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL 272
                    E    L   + +L R   +    +   + +  K   E ++LEL     RL
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQA--KEITETMEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 4/253 (1%)

Query: 50   FDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLV 109
            + + K+    +   + ++  L     +      ++        +   G L        L 
Sbjct: 829  YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 110  QKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECC 169
                 +C     + + EL  L       +          NK    Q+++       K   
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 170  DEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229
            +++   E         +    ++L   +    +    +   +E +    K   + +    
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 230  LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEV-ESLEQKLDSMR 288
              E   ++ K E E   S +KE +    +E+E+L    R++     E+ E++E+KL    
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN---RRIHDQAKEITETMEKKLVEET 1065

Query: 289  KQQKKYFDDVELK 301
            KQ +   +D  L+
Sbjct: 1066 KQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 34/250 (13%), Positives = 94/250 (37%), Gaps = 13/250 (5%)

Query: 73   QRAKEIESKEIKL-VFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLS 131
            +R + +    I L   +   +     ++  +E +  ++QK +      +H        + 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 132  ESLNIK----KEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIE 187
                 +    K EL  ++      + Y+K    L+N I +   +I+ + K+   +   + 
Sbjct: 893  LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952

Query: 188  EREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQS 247
              E   + +   + S    +   EE  ++       +++ +     +L + + E +  + 
Sbjct: 953  NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 248  SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE 307
               +     H  E+ +  L  +  L + E E L +++    K+  +      ++K+ + E
Sbjct: 1013 WADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE-----TMEKKLVEE 1064

Query: 308  IRKYIEELSQ 317
             ++   +L+ 
Sbjct: 1065 TKQLELDLND 1074

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 30/237 (12%), Positives = 81/237 (34%), Gaps = 20/237 (8%)

Query: 182  VQRSIEEREKQLAYKQ--RNISSIQTLIEDYEEVLRDKE----KSYGEVKKSLVLCETKL 235
            + + I +++  L  +    +I S+Q+ +  ++E  + ++    +   E++      +TKL
Sbjct: 778  LVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKL 837

Query: 236  EREKKELELTQSS-----IKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290
               K+E  +  +      I          E++     R     + ++  L QK + + K+
Sbjct: 838  RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKK 897

Query: 291  QKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSI 350
             +          + +        +    + +K K L+      +    +       + + 
Sbjct: 898  LEN-----WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILA- 951

Query: 351  EKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGY---LKEFKEKEKHFDSLKKGLE 404
            + T    +   EL + +      +   V++    Y   L    E+ +  + L     
Sbjct: 952  QLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 18/181 (9%), Positives = 54/181 (29%), Gaps = 13/181 (7%)

Query: 137  KKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYK 196
            ++  ++      N+  +    L+  +    E       R+KK+  + +      K+L   
Sbjct: 842  REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLE-N 900

Query: 197  QRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKF 256
                 S+     +  + +   +     ++            E +      S + +L+   
Sbjct: 901  WATTKSVYLGSNETGDSITAVQAKLKNLEA---FDGECQSLEGQSNSDLLSILAQLTELN 957

Query: 257  HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELS 316
            ++   +L          E +     Q+   ++   + Y + +  +   L +I        
Sbjct: 958  YNGVPELT---------ERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008

Query: 317  Q 317
             
Sbjct: 1009 H 1009

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 44/431 (10%), Positives = 135/431 (31%), Gaps = 38/431 (8%)

Query: 42  QWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVE---KKIEDCNGE 98
                 E  D   +   ++++  +      +   ++ + +   L  ++   KK E    +
Sbjct: 360 NEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESD 419

Query: 99  LECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKEL 158
           L   +  +  +     E N   +     +N+  + +  + + L +        Q  ++ L
Sbjct: 420 LAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGA------LTQKRREAL 473

Query: 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQL--AYKQRNISSIQTLIEDYEEVLRD 216
           +  + L++          K+       +E   + L   +    I  IQ L   +E+    
Sbjct: 474 ERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKAT 533

Query: 217 KEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENE 276
              +  E +  L +     +  +        +    ++       K E + + V   +  
Sbjct: 534 LPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQA 593

Query: 277 VESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI------------------EELSQD 318
           +     +     + +K++     +    +    + I                   +  + 
Sbjct: 594 LMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKS 653

Query: 319 LASKDKQLKFVQQSIEDCSKEFQWKKKEL-SSIEKTIAECSKEVELKKNQLNLVQHESNL 377
           + +   ++  ++   +   +   +  K    ++E       + +      +N V+++   
Sbjct: 654 IVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILT 713

Query: 378 VQTRTIGY--LKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIR 435
              + I    + EF+    HFD        ++  ++ ++         + + E EF  I 
Sbjct: 714 RDAKGISQEQMNEFRASFNHFD------RKKTGMMDCEDFRACLISMGYNMGEAEFARIM 767

Query: 436 KAVEDHSKNLL 446
             V+ +   ++
Sbjct: 768 SIVDPNRMGVV 778

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 35/281 (12%), Positives = 104/281 (37%), Gaps = 30/281 (10%)

Query: 9    SEELRVAESKKETLRRSFDMAHSQANSVLLFTVQ-WKDLEEHFDLTKKS-LEKQSNYVDV 66
            +  + +  S ++ +  S    H    ++    ++  K       +T +  L+  +  V  
Sbjct: 1851 NNLMAIPPSHRDAVVSSLVYIH---QTIGEANIRLLKRQGRQNYVTPRHYLDFINQVV-- 1905

Query: 67   KIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENE 126
               L++++  ++E +++ L    KK+ D   +++  +  L    +       EL +K  +
Sbjct: 1906 --LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNR-------ELDVKNEQ 1956

Query: 127  LNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSI 186
             N   + +   ++     ++   + Q           + K        + +  G ++  +
Sbjct: 1957 ANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEV 2016

Query: 187  EEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQ 246
            E+ E      +     I   I   E+ +   ++ Y  + +     +T+  + K +++ + 
Sbjct: 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076

Query: 247  SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSM 287
            + +  L+    SE         + R  E + E+   ++ ++
Sbjct: 2077 ALLDNLN----SE---------RGRW-EQQSENFNTQMSTV 2103

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/258 (12%), Positives = 97/258 (37%), Gaps = 23/258 (8%)

Query: 200  ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSE 259
              ++      Y       +++       + +  +  +     L     +I E +++    
Sbjct: 1826 TRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKR 1885

Query: 260  EEK---------LELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 310
            + +         L+ +++ V L       + +K D + ++Q     ++ LKK  L +   
Sbjct: 1886 QGRQNYVTPRHYLDFINQVVLL-------INEKRDQLEEEQLHL--NIGLKK--LRDTEA 1934

Query: 311  YIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNL 370
             +++L   LA K+++L    +      K+    ++     +K   E   +++++  ++ +
Sbjct: 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV 1994

Query: 371  VQH--ESNLVQTRTIGYLKEF-KEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELR 427
             +    ++L +    G L+E  ++ E   + LK   ++    +   E+      +E+   
Sbjct: 1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054

Query: 428  EKEFDSIRKAVEDHSKNL 445
             +E + I+         +
Sbjct: 2055 IRETEQIKTESSKVKNKV 2072

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 27/341 (7%), Positives = 102/341 (29%), Gaps = 21/341 (6%)

Query: 118 CELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQL---LKNLIKECCDEIEL 174
             + ++++         ++    ++ + E           L L   ++++  +   +  L
Sbjct: 365 VPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSIL 424

Query: 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK 234
            + +    Q  I+  ++ +      +   + ++++   +L ++E +  +++        +
Sbjct: 425 TKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQR 484

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ---- 290
               +    L                +    +    + H + +  L +    +       
Sbjct: 485 TPSNELYKPLRAE-GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSA 543

Query: 291 QKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSI 350
                         L  +   ++E+ ++    +  LK V   +         +   ++  
Sbjct: 544 NPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEE 603

Query: 351 EKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGL------E 404
             ++ E  +       ++     +   +       LK  +   + F  +K+        E
Sbjct: 604 ALSVTELDRVYGGLTTKVQESLKKQEGL-------LKNIQVSHQEFSKMKQSNNEANLRE 656

Query: 405 DRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNL 445
           +  ++L      F E V   +   K ++ + + +       
Sbjct: 657 EVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKC 697

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 31/281 (11%), Positives = 88/281 (31%), Gaps = 15/281 (5%)

Query: 89  EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWI 148
           +  I+  +  ++   + L   ++ + E    L  +E   N L      + +   S     
Sbjct: 433 QGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS----- 487

Query: 149 NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE 208
                  +  + L+         ++   +  G+V+   +     +    +    +   I 
Sbjct: 488 ------NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP 541

Query: 209 DYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHR 268
                   +     EV   L    + L+  KKE E  ++ +K ++    S+         
Sbjct: 542 SANPAKTMQGS---EVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDG 598

Query: 269 KVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKF 328
            +      V  L++    +  + ++     E   + +    +   ++ Q     + + + 
Sbjct: 599 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEV 658

Query: 329 VQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLN 369
           ++  +      F      L    K   E ++ +   +N+ +
Sbjct: 659 LKN-LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCS 698

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 40/276 (14%), Positives = 112/276 (40%)

Query: 150 KCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIED 209
           K Q  + + +   +   E   + +  E +  +++  +   +K+L   +  +      ++D
Sbjct: 7   KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66

Query: 210 YEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRK 269
            +E L   EK   + +  +     +++  ++EL+  Q  +     K    E+  +   R 
Sbjct: 67  AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126

Query: 270 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFV 329
           +++ E+  +  E+K++    Q K+     E   R+  E+ + +  +  DL   +++ +  
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 186

Query: 330 QQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEF 389
           +    +  +E +     L S+E    + S++ +  + ++ ++  +    +TR     +  
Sbjct: 187 EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 246

Query: 390 KEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFE 425
            + EK  D L+  L  +    +    E +  + +  
Sbjct: 247 TKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 46/282 (16%), Positives = 116/282 (41%), Gaps = 3/282 (1%)

Query: 88  VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEW 147
           ++KK++    + E         +             E+EL SL + L   ++EL    E 
Sbjct: 4   IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE- 62

Query: 148 INKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLI 207
               +  Q++L+L +    +   ++    +++   +  ++  +++LA   + +   +   
Sbjct: 63  --ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 208 EDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLH 267
           ++ E  ++  E    + ++ + + E +L+  K   E      +E++ K    E  LE   
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180

Query: 268 RKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLK 327
            +  L E +   LE+++ ++    K      E   ++ ++  + I+ LS  L   + + +
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240

Query: 328 FVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLN 369
           F ++S+    K     + EL + +      S+E++   N + 
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMT 282

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 29/267 (10%), Positives = 104/267 (38%)

Query: 145 EEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQ 204
           E  +++    + + +  ++  K+  DE+   +KK+   +  +++  + L   Q  +   +
Sbjct: 16  ENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE 75

Query: 205 TLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLE 264
               D E  +    +     ++ L   + +L    ++LE  + +  E        E + +
Sbjct: 76  KKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135

Query: 265 LLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDK 324
               K+ + E +++  +   +   ++ ++    + + + +L    +  E      A  ++
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195

Query: 325 QLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIG 384
           ++K V  +++    + +   ++    E+ I   S +++  + +    +     ++     
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255

Query: 385 YLKEFKEKEKHFDSLKKGLEDRSQDLE 411
              E   ++  + ++ + L+    D+ 
Sbjct: 256 LEDELYAQKLKYKAISEELDHALNDMT 282

>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12} Length = 613

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 34/270 (12%), Positives = 92/270 (34%), Gaps = 13/270 (4%)

Query: 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK 234
           RE ++   +R  +   +          +I  L+E Y  V   +E    ++    V    +
Sbjct: 113 REGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRV-EAEEARLSDLITGFVDPNAE 171

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY 294
            +       +     +E       E+E+          +  + E   +K   +R Q    
Sbjct: 172 EDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVT 231

Query: 295 FDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
            D ++ K R     ++ I +LS+      KQ + V +  +      +     + + E+ I
Sbjct: 232 RDTIKAKGRSHATAQEEILKLSEVF----KQFRLVPKQFDYLVNSMRVMMDRVRTQERLI 287

Query: 355 AE-CSKEVELKKNQL--NLVQHESNL-----VQTRTIGYLKEFKEKEKHFDSLKKGLEDR 406
            + C ++ ++ K         +E++             + ++  +  +      + L+  
Sbjct: 288 MKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQI 347

Query: 407 SQDLEVKEREFEERVKEFELREKEFDSIRK 436
            ++  +   + ++  +   + E +    +K
Sbjct: 348 EEETGLTIEQVKDINRRMSIGEAKARRAKK 377

>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1 Length = 602

 Score = 42.8 bits (99), Expect = 3e-04
 Identities = 43/402 (10%), Positives = 135/402 (33%), Gaps = 5/402 (1%)

Query: 55  KSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIG 114
           +    ++         L   ++ + +    L    ++      + E ++K+     K   
Sbjct: 120 REYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAA 179

Query: 115 ECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIEL 174
           +   E   ++  L++    L  +K   +++     +      +       I E  +++  
Sbjct: 180 DMLAEYERRKGILDTRLSEL--EKNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLSS 237

Query: 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK 234
             + +   + ++   E+QL  ++        +  +          S             K
Sbjct: 238 VTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIK 297

Query: 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY 294
           +                  +     + K  +L+ +  +   +VE  ++  ++   +  K 
Sbjct: 298 ITTSAVIDNRAN---LNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKL 354

Query: 295 FDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTI 354
              +   + ++      +     +L+++  + K    ++    KE +  + +LS I + I
Sbjct: 355 RQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKI 414

Query: 355 AECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKE 414
           AE  ++ +  K   + +   +  +++ +  Y  + ++  +      KG + R+ +  +K 
Sbjct: 415 AEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKT 474

Query: 415 REFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRA 456
            E        ++  K+  +I  A+E    + +    +   R 
Sbjct: 475 YEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRG 516

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 27/192 (14%)

Query: 145 EEWINKCQAYQKELQ-LLKNLIKECCDEIELREKKV----GEVQRSIEEREKQLAYKQRN 199
              I+      K+    L+N        I ++ K      G+V++   +   +L+     
Sbjct: 118 SYKIDGKTVSYKDYSIFLENE------NILIKAKNFLVFQGDVEQIAAQSPVELSRMFEE 171

Query: 200 ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSE 259
           +S      ++YEE+    EK      +S         R   EL+  +S   E+  +    
Sbjct: 172 VSGSIQYKKEYEELKEKIEKLSKSATES----IKNRRRIHGELKTYKSPGLEVLFQGPRG 227

Query: 260 EEKLELLHRKVRLHE------NEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313
               E   R   ++        E + +  +   ++K++K+ F+         + +  +++
Sbjct: 228 SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKT------FDYVSDHLD 281

Query: 314 ELSQDLASKDKQ 325
            + ++L      
Sbjct: 282 AIYRELTKNPNS 293

>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1 Length = 339

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 11/238 (4%)

Query: 202 SIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE 261
           +I  L+E Y  V   +E    ++    V    + +       +     +E       E+E
Sbjct: 31  AITYLLEQYNRV-EAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDE 89

Query: 262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLAS 321
           +          +  + E   +K   +R Q     D ++ K R     ++ I +LS+    
Sbjct: 90  EDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVF-- 147

Query: 322 KDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTR 381
             KQ + V +  +      +     + + E+ I +   E      +  +     N     
Sbjct: 148 --KQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNET--- 202

Query: 382 TIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSIRKAVE 439
                  F           + L D S+++    ++ ++  +E  L  ++   I + + 
Sbjct: 203 ---SDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMS 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	624
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.7
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.58
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.79
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.56
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.08
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.88
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.74
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.62
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.16
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.1
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.69
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.6
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.16
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.08
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.57
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.87
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.25
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.89
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	89.8
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.07
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	84.84
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	84.69
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.73
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.35
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.37
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.27
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	81.96
3l4q_C	170	Phosphatidylinositol 3-kinase regulatory subunit b	81.43
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.3
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	80.02

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.70  E-value=3.6e-08  Score=119.94  Aligned_cols=31  Identities=19%  Similarity=0.194  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q 041911           48 EHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEI   78 (624)
Q Consensus        48 k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~   78 (624)
                      +.+..++.++.+   .+.+++.++.+|+.+...+
T Consensus       864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l  897 (1184)
T 1i84_S          864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLL  897 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555554   5556666666666554444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.58  E-value=1.2e-07  Score=115.25  Aligned_cols=159  Identities=14%  Similarity=0.174  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041911           95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIEL  174 (624)
Q Consensus        95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~  174 (624)
                      +..++..++.++..+.+.+.+++..+..++.++..+...+......+....   ..+..+..+...+...+.+...+++.
T Consensus       862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e---~~l~~l~~~~~~Le~~l~ele~elee  938 (1184)
T 1i84_S          862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE---EMRVRLAAKKQELEEILHEMEARIEE  938 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444332222222221   22222223333333444444444444


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 041911          175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSV  254 (624)
Q Consensus       175 lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~  254 (624)
                      ....+..+...+...+.++..++.++..+...+..+..++...+..+..+...+......+.....+...++.++.++..
T Consensus       939 ~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~ 1018 (1184)
T 1i84_S          939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018 (1184)
T ss_dssp             HHHC----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444433333333333333333333333333333333


Q ss_pred             hh
Q 041911          255 KF  256 (624)
Q Consensus       255 eL  256 (624)
                      .+
T Consensus      1019 ~l 1020 (1184)
T 1i84_S         1019 NL 1020 (1184)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.79  E-value=0.0034  Score=63.33  Aligned_cols=56  Identities=13%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE  313 (624)
Q Consensus       258 ~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele  313 (624)
                      ++..+++.+..++..++.++.+.+.++...+..+......+...+.++.....+++
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~  149 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE  149 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.56  E-value=0.017  Score=58.21  Aligned_cols=6  Identities=0%  Similarity=-0.064  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 041911          301 KKRELN  306 (624)
Q Consensus       301 k~~ele  306 (624)
                      .+.+++
T Consensus       144 ~~~~~~  149 (256)
T 3na7_A          144 LESLVE  149 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.08  E-value=0.18  Score=46.62  Aligned_cols=113  Identities=19%  Similarity=0.215  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 041911          199 NISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVE  278 (624)
Q Consensus       199 e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~  278 (624)
                      +++.+..+.......+..+++.+......+.+.+..-......-..|+.+++.+..+|+.+++..+.....+.-+++.+.
T Consensus        29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id  108 (155)
T 2efr_A           29 LLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID  108 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444444444444334444555677888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          279 SLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       279 ~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      ..+.++...+..+..+..+|+..-.++.++...
T Consensus       109 ~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~  141 (155)
T 2efr_A          109 DLEDELYAQKLKYKAISEEMKQLEDKVEELLSK  141 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888777777777777766666555555544333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.88  E-value=0.33  Score=46.27  Aligned_cols=89  Identities=7%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             HHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 041911          214 LRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ---KLDSMRKQ  290 (624)
Q Consensus       214 le~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~---el~~~~~e  290 (624)
                      +..++..+..+..........|-..+.....++.+.....+.+...+..+++...++..++.++.++..   .+...+.+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE  169 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDE  169 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444455666677777777778888888888888888888888875331   12233444


Q ss_pred             HHHHHHHHHHHH
Q 041911          291 QKKYFDDVELKK  302 (624)
Q Consensus       291 ~~~l~kEle~k~  302 (624)
                      +..+-.|+..++
T Consensus       170 ~rDLk~El~v~~  181 (189)
T 2v71_A          170 ARDLRQELAVRE  181 (189)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHh
Confidence            555555554443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.74  E-value=0.36  Score=44.64  Aligned_cols=120  Identities=14%  Similarity=0.169  Sum_probs=56.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041911          193 LAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL  272 (624)
Q Consensus       193 l~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~  272 (624)
                      +.......+.+...+.++..++......+.++...-.....+-......+..+..+++++..+...++.....+...|..
T Consensus        30 LEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~  109 (155)
T 2efr_A           30 LERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD  109 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444333333333334444444555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI  312 (624)
Q Consensus       273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel  312 (624)
                      ++.++...+........++...+.++......+-.+..+|
T Consensus       110 lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A          110 LEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            5555555555555555555555555555555555544444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.62  E-value=0.45  Score=44.33  Aligned_cols=109  Identities=13%  Similarity=0.053  Sum_probs=44.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH
Q 041911          173 ELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKEL  252 (624)
Q Consensus       173 e~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el  252 (624)
                      ..+++...++...+...+....+++..+..+......+..++..+...+..-...-......+.+..+-+.++...++..
T Consensus        30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~  109 (168)
T 3o0z_A           30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444444433333333333322222222333333333334444444


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          253 SVKFHSEEEKLELLHRKVRLHENEVESLE  281 (624)
Q Consensus       253 ~~eL~~~e~eleq~~~ki~~~ekel~~~~  281 (624)
                      ...+..+..+-.++..+|.+++++.-+.+
T Consensus       110 k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A          110 KHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444444444455555555444444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.16  E-value=1.2  Score=58.99  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          240 KELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY  311 (624)
Q Consensus       240 ~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke  311 (624)
                      ..+...+.+++++..+|..++.+++.+..+...++.+....+.++..+.+=+.+|-.|-..=...++.+...
T Consensus      2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A         2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence            334444444444444555555555555555555555555555555555555555555555444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.10  E-value=3.3  Score=54.84  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             HHhhHHHHhHHHHHHHHhhhhhhHHHHHHHHHH
Q 041911          405 DRSQDLEVKEREFEERVKEFELREKEFDSIRKA  437 (624)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~  437 (624)
                      .-+......-.....++.+.+..+.+++..++.
T Consensus      2368 ~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R~~ 2400 (3245)
T 3vkg_A         2368 STLETLKKETTEIALKVEETETVMQEISEVSAL 2400 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666677777777777777776664

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.69  E-value=1.4  Score=41.12  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ  290 (624)
Q Consensus       247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e  290 (624)
                      +.+.++..++.++..++++..........+......++-..+++
T Consensus        90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe  133 (168)
T 3o0z_A           90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.60  E-value=0.99  Score=54.23  Aligned_cols=7  Identities=14%  Similarity=0.187  Sum_probs=2.7

Q ss_pred             hhhhHhh
Q 041911           36 VLLFTVQ   42 (624)
Q Consensus        36 I~~y~~r   42 (624)
                      ++.|..|
T Consensus       849 ~Rg~laR  855 (1080)
T 2dfs_A          849 LRGYLVR  855 (1080)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.16  E-value=2.3  Score=40.46  Aligned_cols=56  Identities=14%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911          174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV  229 (624)
Q Consensus       174 ~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~  229 (624)
                      .+......+...|.+++..-+++....-.....+.++...+...-+++.=+..++.
T Consensus        99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444444444444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.08  E-value=0.81  Score=39.19  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=35.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 041911          196 KQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHEN  275 (624)
Q Consensus       196 lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ek  275 (624)
                      ++.+.+.+....+.+...+...+........+|.+...++.-...++..++.++.++...|...++......-.+..+.+
T Consensus        14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R   93 (101)
T 3u1c_A           14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444434444444433333344455555555555555544444444444444444444


Q ss_pred             HH
Q 041911          276 EV  277 (624)
Q Consensus       276 el  277 (624)
                      +|
T Consensus        94 ri   95 (101)
T 3u1c_A           94 RI   95 (101)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.57  E-value=1.6  Score=37.25  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=10.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041911          248 SIKELSVKFHSEEEKLELLHRKVRLH  273 (624)
Q Consensus       248 ql~el~~eL~~~e~eleq~~~ki~~~  273 (624)
                      .+.+.......++.+...+..+|..+
T Consensus        73 kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           73 SLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.38  E-value=1.6  Score=37.32  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911          200 ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEV  277 (624)
Q Consensus       200 ~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel  277 (624)
                      .+.+......+...+...+.........|.+...++.....++..+..++..+..+|...+.......-.+..+.++|
T Consensus        18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333444444444444444444444444444444444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.87  E-value=4.7  Score=48.40  Aligned_cols=19  Identities=21%  Similarity=0.261  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 041911          237 REKKELELTQSSIKELSVK  255 (624)
Q Consensus       237 ~~~~el~~le~ql~el~~e  255 (624)
                      ....+...++.++.++...
T Consensus      1027 ~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A         1027 ELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444445555554433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.25  E-value=2.6  Score=38.49  Aligned_cols=43  Identities=21%  Similarity=0.197  Sum_probs=15.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911          159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNIS  201 (624)
Q Consensus       159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e  201 (624)
                      +.+..++.+...-.+.....+.++...+.-.+..+.......+
T Consensus        55 ~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae   97 (147)
T 2b9c_A           55 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE   97 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.89  E-value=4.6  Score=32.92  Aligned_cols=71  Identities=11%  Similarity=0.144  Sum_probs=35.6

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 041911          253 SVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKD  323 (624)
Q Consensus       253 ~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~  323 (624)
                      +.++..+..+.+....+...++.+++..+......+.++..+.+.+...+.+++..+..+......|+..+
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555555555555555555555555555444444444443333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=89.80  E-value=10  Score=33.62  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK  310 (624)
Q Consensus       262 eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~k  310 (624)
                      .+..+...-..++..+.....++...+..+..+..+-...+.++..+.+
T Consensus        70 ~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444444444443333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.07  E-value=5.4  Score=32.50  Aligned_cols=10  Identities=40%  Similarity=0.498  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 041911          241 ELELTQSSIK  250 (624)
Q Consensus       241 el~~le~ql~  250 (624)
                      ++..+++++.
T Consensus        56 eld~~ee~l~   65 (81)
T 1ic2_A           56 ELDKYSESLK   65 (81)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=84.84  E-value=16  Score=30.50  Aligned_cols=66  Identities=12%  Similarity=0.195  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911          165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL  230 (624)
Q Consensus       165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~  230 (624)
                      +++....+-.+..+...+...+...+..+..-...+..-...|+.....+.....++...+..|..
T Consensus         8 ~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~E   73 (114)
T 2xzr_A            8 IEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINE   73 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHH
Confidence            333333333444444444334433333333333333333333334444444444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=84.69  E-value=25  Score=38.14  Aligned_cols=22  Identities=5%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             cCCCCCCh--HHHHHHHHHhhhcc
Q 041911          545 RLAPAFDG--EELESLLCIVAQHR  566 (624)
Q Consensus       545 gl~s~fd~--~el~~l~~~v~~~~  566 (624)
                      |-..+|..  -+...||...+..+
T Consensus       485 g~ld~~~~rhpd~~~ff~~~stg~  508 (562)
T 3ghg_A          485 GTLDGFRHRHPDEAAFFDTASTGK  508 (562)
T ss_dssp             ------------------------
T ss_pred             cchhhhhhhCcchHhhccccccCc
Confidence            55555533  44444555444433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.73  E-value=26  Score=32.06  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=13.0

Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911          160 LLKNLIKECCDEIELREKKVGEVQRSIEERE  190 (624)
Q Consensus       160 ~~~~~ieE~~kele~lekeleele~~Ieeke  190 (624)
                      .+...+.+........+.....++.+++++.
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT   92 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLT   92 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.35  E-value=11  Score=40.88  Aligned_cols=30  Identities=13%  Similarity=0.021  Sum_probs=15.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 041911          194 AYKQRNISSIQTLIEDYEEVLRDKEKSYGE  223 (624)
Q Consensus       194 ~~lq~e~e~l~~eieel~eele~kEe~l~~  223 (624)
                      +..-..+..++..|+++..+|..+|--|..
T Consensus       127 dnQlsnIrvLQsnLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          127 IEKVQHIQLLQKNVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555555555555555443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.37  E-value=21  Score=29.99  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911          245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEV  277 (624)
Q Consensus       245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel  277 (624)
                      |-.....+...+.....++..+...+.|....+
T Consensus        58 ~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL   90 (96)
T 3q8t_A           58 YQREYSEFKRQQLELDDELKSVENQMRYAQMQL   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333343344444444444444433333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.27  E-value=11  Score=33.56  Aligned_cols=8  Identities=13%  Similarity=0.252  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 041911          270 VRLHENEV  277 (624)
Q Consensus       270 i~~~ekel  277 (624)
                      |.+++.++
T Consensus        86 i~~lE~eL   93 (131)
T 3tnu_A           86 IGSVEEQL   93 (131)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=81.96  E-value=25  Score=30.46  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLE  281 (624)
Q Consensus       239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~  281 (624)
                      +..-..++.+.....+-|...+..+++.-.+...++.++.++.
T Consensus        62 Eq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe  104 (111)
T 2v66_B           62 EQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666677777777777777777777776543

>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B

Probab=81.43  E-value=34  Score=31.80  Aligned_cols=106  Identities=20%  Similarity=0.187  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HhhHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 041911          187 EEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL---------VLCETKLEREKKELELTQSSIKELSVKFH  257 (624)
Q Consensus       187 eeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I---------~~~e~~ie~~~~el~~le~ql~el~~eL~  257 (624)
                      +.+-..|.....++.-....++.+.+.+.--++++.....--         ......+.+...-..-+..++..+...-.
T Consensus        34 d~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~  113 (170)
T 3l4q_C           34 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRT  113 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444455455555555555555555554333100         00111112222222334555666555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK  292 (624)
Q Consensus       258 ~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~  292 (624)
                      .++..+.........+++++.+.+|++....+.-.
T Consensus       114 ~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD  148 (170)
T 3l4q_C          114 KLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD  148 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56666666666677777777777777666554443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.30  E-value=5.5  Score=35.71  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=14.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041911          158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEREK  191 (624)
Q Consensus       158 l~~~~~~ieE~~kele~lekeleele~~Ieeke~  191 (624)
                      +..+...+.+........+.....++.+++++..
T Consensus        48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa   81 (135)
T 2e7s_A           48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   81 (135)
T ss_dssp             HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444433

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=80.02  E-value=31  Score=30.44  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=26.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911          248 SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK  292 (624)
Q Consensus       248 ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~  292 (624)
                      .+.+++..|+...+=.+.+..-|+.+.++++...-.+...-..++
T Consensus        99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE  143 (167)
T 4gkw_A           99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFE  143 (167)
T ss_dssp             HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666777777777777777777665544443333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	624
d1ab4a_	493	e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxI	2e-04

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} Length = 493

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA Gyrase A
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 13/178 (7%)

Query: 165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE--DYEEVLRDKEKSYG 222
           +K+         ++V  V R      ++   +   + ++   +   D    L     +  
Sbjct: 318 LKDIIAAFVRHRREV--VTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPA 375

Query: 223 EVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282
           E K +LV    +L      LE       + + +    E +  +      L E + +++  
Sbjct: 376 EAKTALVANPWQLGNVAAMLER----AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI-- 429

Query: 283 KLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEF 340
            LD +R Q+    +  +L   E  E+   I EL + L S D+ ++ +++ +E   ++F
Sbjct: 430 -LD-LRLQKLTGLEHEKLLD-EYKELLDQIAELLRILGSADRLMEVIREELELVREQF 484

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00