Citrus Sinensis ID: 041916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLKGEQSLNTNIPQALLDFTCMHAIRPLENHHHLK
Secondary Structure (PSIPRED)
ccEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEcccccccccEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEcccccEEEEEcccEEEEccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEcccccccccccccccccEEEEEcccccccEEcccccccEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccEEEEEHHccccccHHHccccEEEEEEEccccEEEEEEccccHHHEEcccccccccHEEcccccEEEEEcccccEEEEEcccccccHHHEEEccccEEEEEEccccEEEEEEccccEEEEEEEccccccccccccccEEEEccccEEEEEcccEEEEEEcccccccccccEEEccccccEEEEEEEccHHHEEEEccccccEEEEEcccccccccHHcccccccHHHHHHHHHHHHHHHccccHEEcccccccccccccHHHHHHHHHHHHHHccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
ypyiynrdgtelHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVgnfrtglgrtdvmrvnpfngvvslghsggtvtmwkpttaaPLIKMlchqgpvsalafhpnghlmatsgkeckIKIWDLRKYEVLQtlpghaktldfsqkgllavgTGSFVQILGdfsgshnysrymghsmvkgyqigkvsfrpyedvlgighsmgwssilvpgsgepnfdswvanpfetsKQRREKEVRSLldklppetimlnpskigtvreakkkekptKQEREAEMEAAVEAVKGFVWknktkgrnkpskkAKKKQELVAKAKRPFLDQQLKGEQSLNTNIPQALLDFTCmhairplenhhhlk
Flexible Loop (DISEMBL)
ypyiynrdgtelHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPfetskqrrEKEVrslldklppetimlnpskigtvreakkkekptkqereaEMEAAVeavkgfvwknktkgrnkpskkakkkQELVAKAKRPFLDQQLKGEQSLNTNIPQALLDFTCMHAIRPLENHHHLK
Low Complexity Region (SEG)
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEReaemeaaveavKGFVWKNKTKGRNKPSkkakkkqelvakakRPFLDQQLKGEQSLNTNIPQALLDFTCMHAIRPLENHHHLK
Disordered region (IsUnstruct)
**YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWV*************************************************************VKGFVW******************************************IPQALLDFTCMHA***********
Disordered Region (DISOPRED)
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAK********************************************************************************************
Disordered Region (DISEMBL)
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFET**********SLLDKLPPETIMLNPSKIGTV*******************AAVEAVKGFVWKNKT*****************AKAKRPFLDQQLKGEQSLNTNIPQALLDFTCMHAIRPLENHHHLK
Disordered Region (DISPRO)
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAA*****G************PSKKAKKKQELVAKAKRPFLDQQLKGEQSL***IPQALLDFTCMHAIRPLE******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLKGEQSLNTNIPQALLDFTCMHAIRPLENHHHLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
Q9P4X3	520	Probable U3 small nucleol	yes	no	0.888	0.613	0.426	3e-67
Q9Z0H1	622	WD repeat-containing prot	yes	no	0.894	0.516	0.419	1e-62
P40055	554	U3 small nucleolar RNA-as	yes	no	0.729	0.472	0.419	1e-61
O15213	610	WD repeat-containing prot	no	no	0.885	0.521	0.416	1e-61
Q5TJE7	612	WD repeat-containing prot	yes	no	0.894	0.524	0.419	3e-61
Q8TC44	478	POC1 centriolar protein h	no	no	0.376	0.282	0.282	5e-10
Q5RD06	451	POC1 centriolar protein h	no	no	0.376	0.299	0.275	2e-09
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.534	0.125	0.248	3e-09
P49695	742	Probable serine/threonine	no	no	0.532	0.257	0.273	4e-09
Q7ZVF0	416	POC1 centriolar protein h	no	no	0.456	0.394	0.267	6e-09

>sp|Q9P4X3|UTP7_SCHPO Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=3 SV=1

 Score =  255 bits (652), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 143/335 (42%), Positives = 199/335 (59%), Gaps = 16/335 (4%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           Y Y+Y+  GTE+HCLK H  V  L FL  H LL SI   G L+YQDV+ G++V   RTG+
Sbjct: 164 YVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGNAGYLKYQDVSTGQLVAEHRTGM 223

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           G + V+  NP N V  +GH+ G VT+W P++  PL+KML H+GPV  LA + +G  M T+
Sbjct: 224 GASHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTA 283

Query: 121 GKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY 178
           G +  +K+WDLR Y+ L +   P  A+ L  S +GLLAVG G    I  D   +     Y
Sbjct: 284 GADSLLKVWDLRTYKELHSYYTPTPAQRLTLSDRGLLAVGWGPHATIWKDALRTKQNFPY 343

Query: 179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRRE 238
           M H ++    +  + + PYED+LGIGH+ G+ SI+VPGSGEPN+DS+  +PF + KQR+E
Sbjct: 344 MNH-LLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQE 402

Query: 239 KEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTK 298
            EVR LL+KL PE I LN   IG V      ++     R+AE E      + +V K K +
Sbjct: 403 TEVRQLLEKLRPEMISLNADFIGNV------DRAAPSLRKAEAEEEKPPEEKWVPKAKAR 456

Query: 299 GRNKPSKKAKKKQELVAKAKRPFLDQ-QLKGEQSL 332
           G+N   ++  +K        R  +DQ +LK E+SL
Sbjct: 457 GKNSALRRYLRKH------ARNVVDQRRLKVEKSL 485

Involved in nucleolar processing of pre-18S ribosomal RNA.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9Z0H1|WDR46_MOUSE WD repeat-containing protein 46 OS=Mus musculus GN=Wdr46 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 139/331 (41%), Positives = 199/331 (60%), Gaps = 10/331 (3%)

Query: 3   YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
           YIY+  G ELHC++    V +L+FL  HFLLA+ ++ G L Y DV++G+IV       GR
Sbjct: 259 YIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSVGKIVTALNVRAGR 318

Query: 63  TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
             VM  NP+N V+ LGHS GTV++W P    PL K+LCH+G V A+A    G  MATSG 
Sbjct: 319 LSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMATSGL 378

Query: 123 ECKIKIWDLR-KYEVL--QTLPGHAKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYS 176
           + ++KI+DLR  ++ L  +TLP  A  L FSQ+GLL  G G  V I    G  S      
Sbjct: 379 DHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQ 438

Query: 177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR 236
            Y+ H +  G+  G + F P+EDVLG+GHS G++S+LVPG+ EPNFD    NP+ + KQR
Sbjct: 439 PYLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRSRKQR 496

Query: 237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNK 296
           +E EV++LL+K+P E I LNP  +  V     +++  K+ER   +    +A   F  K K
Sbjct: 497 QEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQ--KKERIERLGYDPDAKAAFQPKAK 554

Query: 297 TKGRNKPSKKAKKKQELVAKAKRPFLDQQLK 327
            KGR+  +   K+K++++ +  R  + Q L+
Sbjct: 555 QKGRSSTASLVKRKKKVMDQEHRDKVRQSLE 585

Mus musculus (taxid: 10090)

>sp|P40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP7 PE=1 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 176/281 (62%), Gaps = 19/281 (6%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           Y +IY+ +GTELH LK+H     L FL  H+LL +  + G L+Y DV+ G++V   RT  
Sbjct: 173 YTFIYDHEGTELHRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVSTGQLVSELRTKA 232

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           G T  M  NP+N V+ LGHS GTV++W P+   PL+K+L  +GPV+++A   +G+ MAT+
Sbjct: 233 GPTMAMAQNPWNAVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATT 292

Query: 121 GKECKIKIWDLRKYEVL---QTLPGHAKTLDFSQKGLLAVGTGSFVQILGD---FSGS-- 172
           G +  +KIWD+R ++ L   ++LP     +  S  GLLA+  G  V +  D    SG   
Sbjct: 293 GADRSMKIWDIRNFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSK 352

Query: 173 ----------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222
                     H  + YM H +  G ++  + F P+ED+LG+GH  G ++++VPG+GE N+
Sbjct: 353 PCFGSMGGNPHRNTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANY 411

Query: 223 DSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTV 263
           D+   NPFET KQR+E+EVR+LL+KLP +TI L+P+ IG+V
Sbjct: 412 DALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSV 452

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O15213|WDR46_HUMAN WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/334 (41%), Positives = 199/334 (59%), Gaps = 16/334 (4%)

Query: 3   YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
           +IY+  G ELHC++    V +L+FL  HFLLA+ ++ G L Y DV++G+IV       GR
Sbjct: 260 HIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGR 319

Query: 63  TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
            DVM  NP+N V+ LGHS GTV++W P    PL K+LCH+G V A+A    G  MATSG 
Sbjct: 320 LDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGL 379

Query: 123 ECKIKIWDLR-KYEVL--QTLPGHAKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYS 176
           + ++KI+DLR  Y+ L  +TLP  A  L FSQ+GLL  G G  V I    G  S      
Sbjct: 380 DHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQ 439

Query: 177 RYMGHSM---VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETS 233
            Y+ H +   V G Q     F P+EDVLG+GH+ G +S+LVPG+GEPNFD   +NP+ + 
Sbjct: 440 PYLTHRLSGPVHGLQ-----FCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSR 494

Query: 234 KQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVW 293
           KQR+E EV++LL+K+P E I L+P  +  V     ++   K+E+   +    +A   F  
Sbjct: 495 KQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQ--GKKEQIERLGYDPQAKAPFQP 552

Query: 294 KNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLK 327
           K K KGR+  +   K+K++++ +  R  + Q L+
Sbjct: 553 KPKQKGRSSTASLVKRKRKVMDEEHRDKVRQSLQ 586

Homo sapiens (taxid: 9606)

>sp|Q5TJE7|WDR46_CANFA WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/331 (41%), Positives = 199/331 (60%), Gaps = 10/331 (3%)

Query: 3   YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
           +IY+  G ELHC++    V +L+FL  HFLLA+ ++ G L Y DV++G+IV       GR
Sbjct: 261 HIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGR 320

Query: 63  TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
            DVM  NP+N V+ LGHS GTV++W P    PL K+LCH+G V A+A    G  MATSG 
Sbjct: 321 LDVMTKNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGL 380

Query: 123 ECKIKIWDLR-KYEVL--QTLPGHAKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYS 176
           + ++KI+DLR  ++ L  +TLP  A  L FSQ+GLLA G    V I    G  S      
Sbjct: 381 DHQLKIFDLRGMFQPLSARTLPQGAGHLAFSQRGLLAAGMSDVVNIWMGQGMASPPSLEQ 440

Query: 177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR 236
            Y+ H +  G+  G + F P+EDVLG+GHS G +S+LVPG+ EPNFD    NP+ + KQR
Sbjct: 441 PYLTHRL-SGHVHG-LHFCPFEDVLGLGHSGGITSMLVPGAAEPNFDGLENNPYRSQKQR 498

Query: 237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNK 296
           +E EV++LL+K+P E I L+P  +  V     +++  K+ER   +    EA   F  K K
Sbjct: 499 QEWEVKALLEKVPAELICLDPRALAEVDVISLEQE--KKERIERLGYDPEAKAPFQPKPK 556

Query: 297 TKGRNKPSKKAKKKQELVAKAKRPFLDQQLK 327
            KGR+  +   K++++++ K  R  + Q L+
Sbjct: 557 QKGRSSTASLVKRRRKVMDKEHRDKVRQSLE 587

Canis familiaris (taxid: 9615)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           L+ S ++   ++  D T  + V NF   +G  + +  NP    ++   S  TV +W    
Sbjct: 158 LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRV 217

Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK---TLD 148
              L     H G V+ ++FHP+G+ + T+  +  +KI DL +  ++ TL GH     T+ 
Sbjct: 218 NKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVS 277

Query: 149 FSQKGLLAVGTGSFVQIL 166
           FS+ G L    G+  Q+L
Sbjct: 278 FSKGGELFASGGADTQVL 295

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           L+ S ++   ++  D T  + V NF   +G  + +  NP    ++   S  TV +W    
Sbjct: 158 LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRV 217

Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK---TLD 148
              L     H G V+ ++FHP+ + + T+  +  +KI DL +  ++ TL GH     T+ 
Sbjct: 218 NKLLQHYQVHSGGVNCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQGHTGPVFTVS 277

Query: 149 FSQKGLLAVGTGSFVQIL 166
           FS+ G L    G+  Q+L
Sbjct: 278 FSKGGELFASGGADTQVL 295

Required for ciliogenesis.

Pongo abelii (taxid: 9601)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 9    GTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67
            G EL   K H + V  + F ++  +LAS +    +R  D++ G+ +  F+    R   + 
Sbjct: 896  GKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV 955

Query: 68   VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIK 127
             +P + +++ G S  TV +W  ++   L     H G V ++AF+ +G ++AT   +  ++
Sbjct: 956  FSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVR 1015

Query: 128  IWDLRKYEVLQTLPGH---AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM 183
            +WD+   +      GH    +++ FS  G +LA G+      L D S  +      GH+ 
Sbjct: 1016 LWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTS 1075

Query: 184  VKGYQIGKVSFRPYEDVLGIG 204
                 +  V F P   +L  G
Sbjct: 1076 C----VRSVVFSPDGAMLASG 1092

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 10/201 (4%)

Query: 9   GTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67
           G ELH L+ H   V  + F  +  LLAS +    +R  DV   E    F         + 
Sbjct: 491 GDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIA 550

Query: 68  VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIK 127
            +P   +V+ G   GT  +W   T      +  H   V A+AF P+G ++A+  ++  I+
Sbjct: 551 FSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIR 610

Query: 128 IWDL---RKYEVLQTLPGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM 183
           +WD+   ++ +VLQ    +  +L FS  G +L  G+ S V  L D +       + GH+ 
Sbjct: 611 LWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVH-LWDVASGEALHTFEGHT- 668

Query: 184 VKGYQIGKVSFRPYEDVLGIG 204
                +  V+F P   +L  G
Sbjct: 669 ---DWVRAVAFSPDGALLASG 686

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 15  LKEHGAVLKL-QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73
           L+EH   ++  +F  +  L+ S++    ++  D +  +++  F    G +  +  +P + 
Sbjct: 140 LREHNNWVRCARFSPDGQLMVSVSDDRTVKLWDASSRQLIHTFCEPGGYSSYVDFHPSST 199

Query: 74  VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
            ++   S  TV +W   T   L     H   V+AL+FHP+G+ + T+  +  +KI DL +
Sbjct: 200 CIATASSDNTVRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDLLE 259

Query: 134 YEVLQTLPGH---AKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYSRYM 179
             +L TL GH   A  + FS+ G      GS  Q++    +F  S +YSR +
Sbjct: 260 GRLLYTLHGHQGSASCVSFSRSGDQFASAGSDQQVMVWRTNF-DSVDYSRVL 310

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
296090366	536	unnamed protein product [Vitis vinifera]	0.927	0.621	0.820	1e-160
359486916	610	PREDICTED: probable U3 small nucleolar R	0.927	0.545	0.820	1e-160
224109894	537	predicted protein [Populus trichocarpa]	0.908	0.607	0.825	1e-159
356576345	535	PREDICTED: probable U3 small nucleolar R	0.922	0.618	0.804	1e-158
356535525	535	PREDICTED: probable U3 small nucleolar R	0.952	0.639	0.762	1e-156
255580620	526	WD-repeat protein, putative [Ricinus com	0.908	0.619	0.825	1e-154
449442126	536	PREDICTED: probable U3 small nucleolar R	0.958	0.641	0.769	1e-152
297829594	536	transducin family protein [Arabidopsis l	0.905	0.606	0.759	1e-140
30681364	536	transducin/WD40 domain-containing protei	0.905	0.606	0.756	1e-139
12322776	548	hypothetical protein; 61080-58687 [Arabi	0.905	0.593	0.756	1e-139

>gi|296090366|emb|CBI40185.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/334 (82%), Positives = 309/334 (92%), Gaps = 1/334 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNRDGTELHCLKEHG+VLKLQFL+NHFLLASINKFGQL YQDVTMGE+VGN+RTGL
Sbjct: 179 YPYIYNRDGTELHCLKEHGSVLKLQFLKNHFLLASINKFGQLHYQDVTMGEMVGNYRTGL 238

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRT VM+VNPFNGVV LGHSGG VTMWKPT++APL+KMLCH GP+SALAFHPNGHLMAT+
Sbjct: 239 GRTAVMQVNPFNGVVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHPNGHLMATA 298

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           G + KIK+WDLRK+EVLQTLPGHAKTLDFSQKGLLA GTGSFVQILGDFSG+ NYSRYMG
Sbjct: 299 GMDKKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGTENYSRYMG 358

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HSM KGYQIGKV FRPYEDVL IGHSMGWS IL+PGSGEPNFDSWVANPFETSKQRREKE
Sbjct: 359 HSMAKGYQIGKVLFRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFETSKQRREKE 418

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           V SLLDKLPPETIML+P+KIGTVR+++K+EKPTKQER+AEMEAAVE  K    + K KG+
Sbjct: 419 VHSLLDKLPPETIMLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIPLRKKMKGK 478

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQLKGEQSLNT 334
           NKPSKK KK++E VA+AK+PFL++Q++ E++L+T
Sbjct: 479 NKPSKKVKKREEAVARAKKPFLERQME-EENLST 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486916|ref|XP_002269978.2| PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/334 (82%), Positives = 309/334 (92%), Gaps = 1/334 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNRDGTELHCLKEHG+VLKLQFL+NHFLLASINKFGQL YQDVTMGE+VGN+RTGL
Sbjct: 253 YPYIYNRDGTELHCLKEHGSVLKLQFLKNHFLLASINKFGQLHYQDVTMGEMVGNYRTGL 312

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRT VM+VNPFNGVV LGHSGG VTMWKPT++APL+KMLCH GP+SALAFHPNGHLMAT+
Sbjct: 313 GRTAVMQVNPFNGVVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHPNGHLMATA 372

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           G + KIK+WDLRK+EVLQTLPGHAKTLDFSQKGLLA GTGSFVQILGDFSG+ NYSRYMG
Sbjct: 373 GMDKKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGTENYSRYMG 432

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HSM KGYQIGKV FRPYEDVL IGHSMGWS IL+PGSGEPNFDSWVANPFETSKQRREKE
Sbjct: 433 HSMAKGYQIGKVLFRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFETSKQRREKE 492

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           V SLLDKLPPETIML+P+KIGTVR+++K+EKPTKQER+AEMEAAVE  K    + K KG+
Sbjct: 493 VHSLLDKLPPETIMLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIPLRKKMKGK 552

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQLKGEQSLNT 334
           NKPSKK KK++E VA+AK+PFL++Q++ E++L+T
Sbjct: 553 NKPSKKVKKREEAVARAKKPFLERQME-EENLST 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109894|ref|XP_002315346.1| predicted protein [Populus trichocarpa] gi|222864386|gb|EEF01517.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/326 (82%), Positives = 304/326 (93%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNRDG ELHCLKEHGAV +LQFL+NHFLLASINKFGQLRYQDVTMGE++ NFRTGL
Sbjct: 179 YPYIYNRDGVELHCLKEHGAVTRLQFLKNHFLLASINKFGQLRYQDVTMGEMISNFRTGL 238

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM+ NPFNGVV+LGHSGGTV+MWKPT+A PL+KMLCH GP++A+AFHP+GHLMATS
Sbjct: 239 GRTDVMQANPFNGVVALGHSGGTVSMWKPTSAVPLVKMLCHPGPITAMAFHPDGHLMATS 298

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           GKE KIKIWD+RK+EVLQT+ GHAKTLDFSQKGLLA GTGSFVQ+ GDFSGS NYSR+MG
Sbjct: 299 GKEKKIKIWDVRKFEVLQTIRGHAKTLDFSQKGLLAAGTGSFVQVFGDFSGSRNYSRHMG 358

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HS+VKGYQIGKV+FRPYEDVLGIGHS GWSSIL+PGSGEPNFD+W+ANPFET+KQRREKE
Sbjct: 359 HSIVKGYQIGKVAFRPYEDVLGIGHSTGWSSILIPGSGEPNFDTWLANPFETTKQRREKE 418

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           + SLLDKLPPETIML+PSKIGTV+ AKKKEKPTK+E EA+MEAAVEA KG   KNKTKG+
Sbjct: 419 IHSLLDKLPPETIMLDPSKIGTVKSAKKKEKPTKKEMEADMEAAVEAAKGTAIKNKTKGK 478

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQL 326
           NKPSK A KK+E+V +AK+PFLDQQ+
Sbjct: 479 NKPSKIAVKKKEIVVRAKKPFLDQQM 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576345|ref|XP_003556293.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/333 (80%), Positives = 304/333 (91%), Gaps = 2/333 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNR+GTELHCLKEHG VL+LQFL NHFLLASINKFGQLRYQDVTMG +VGNFRTGL
Sbjct: 179 YPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGL 238

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRT+VM+VNPFNGVVSLGHSGGTVTMWKPT+A+PL+KMLCH GPVSALAFH NGHLMAT+
Sbjct: 239 GRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATA 298

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           GK+ KIK+WDLRK+EVLQTLPGHA TLDFSQKGLLA G GS +Q+L D SG+ NYS+YM 
Sbjct: 299 GKDKKIKLWDLRKFEVLQTLPGHATTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSKYMT 358

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HSMVKGYQIGK+ FRPYEDVLGIGHSMGWSSIL+PG+GEPNFDSWVANPFETSKQRREKE
Sbjct: 359 HSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKE 418

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           +RSLLDKLPPETIML+PSKIGTV+   ++EKPTKQEREAE+EA VEA KG   K KTKGR
Sbjct: 419 IRSLLDKLPPETIMLDPSKIGTVK--PRREKPTKQEREAEIEADVEAAKGKKLKKKTKGR 476

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQLKGEQSLN 333
           NKP K+ +KKQE VA+ KRP+L+Q+++ E+S++
Sbjct: 477 NKPGKRVQKKQEAVARVKRPYLEQKIQEEESIS 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535525|ref|XP_003536295.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 308/353 (87%), Gaps = 11/353 (3%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNR+GTELHCLKEHG VL+LQFL NHFLLASINKFGQLRYQDVTMG +VGNFRTGL
Sbjct: 179 YPYIYNREGTELHCLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGL 238

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRT+VM+VNPFNGVVSLGHSGGTVTMWKPT+A+PL+KMLCH GPVSALAFH NG LMAT+
Sbjct: 239 GRTNVMQVNPFNGVVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGLLMATA 298

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           GK+ KIK+WDLRK+EVLQTLPGHA TLDFSQKGLLA G GS +QIL D SG+ NYS+YM 
Sbjct: 299 GKDKKIKLWDLRKFEVLQTLPGHANTLDFSQKGLLACGNGSLIQILRDVSGTQNYSKYMT 358

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HSMVKGYQIGK+ FRPYEDVLGIGHSMGWSSIL PG+GEPNFDSWVANPFETSKQRREKE
Sbjct: 359 HSMVKGYQIGKLVFRPYEDVLGIGHSMGWSSILTPGAGEPNFDSWVANPFETSKQRREKE 418

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           +RSLLDKLPPETIML+PSKIGTV+   ++E+PTKQEREAE+EA VEA KG   K KTKGR
Sbjct: 419 IRSLLDKLPPETIMLDPSKIGTVK--PRRERPTKQEREAEIEAGVEAAKGMKLKKKTKGR 476

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQLKGEQSL---------NTNIPQALLDFT 344
           NKP K+ +KKQE V++ KRP+L+Q+++ E+S+         +  +P++L  F 
Sbjct: 477 NKPGKRVQKKQEAVSRVKRPYLEQKIQEEESISRKKQKTSEDVELPKSLQRFA 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580620|ref|XP_002531133.1| WD-repeat protein, putative [Ricinus communis] gi|223529282|gb|EEF31253.1| WD-repeat protein, putative [Ricinus communis]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/326 (82%), Positives = 293/326 (89%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIY RDGTELHCL+ HGAVL+LQFLRNHFLLASINK GQL YQD+TMG ++GN RTGL
Sbjct: 168 YPYIYYRDGTELHCLEGHGAVLRLQFLRNHFLLASINKLGQLHYQDITMGGMIGNIRTGL 227

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM VNPFN VV+LGH+GG VTMWKPT+AAPLIKMLCH GPV A+AFHPNGHLMATS
Sbjct: 228 GRTDVMEVNPFNAVVALGHAGGRVTMWKPTSAAPLIKMLCHPGPVLAMAFHPNGHLMATS 287

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           G E KIKIWDLRK+EVLQT+PGHAKTLDFSQ GLLA GTGS+VQILGDFSGS +YSRYMG
Sbjct: 288 GMERKIKIWDLRKFEVLQTIPGHAKTLDFSQNGLLATGTGSYVQILGDFSGSQSYSRYMG 347

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           H MVKGY+I KV FRPYEDVLGIGHSMGWSSIL PGSGEPNFDSW+ANPFETSKQRREKE
Sbjct: 348 HPMVKGYEIRKVLFRPYEDVLGIGHSMGWSSILTPGSGEPNFDSWLANPFETSKQRREKE 407

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           VR+LLDKLPPETIML+PSKIGTVR  KK++KPTKQE  AEMEAAVEAVK    KNKTKGR
Sbjct: 408 VRTLLDKLPPETIMLDPSKIGTVRPVKKRDKPTKQEIAAEMEAAVEAVKDVAVKNKTKGR 467

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQL 326
           +K S K KK++EL+ K KRPFLDQQ+
Sbjct: 468 SKASNKLKKRKELIDKVKRPFLDQQM 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442126|ref|XP_004138833.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus] gi|449528879|ref|XP_004171429.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/352 (76%), Positives = 306/352 (86%), Gaps = 8/352 (2%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           YPYIYNR+GTELHCLKEHG+V +LQFL+NHFLL SINKFGQL YQDVT G +VG+FRTGL
Sbjct: 179 YPYIYNREGTELHCLKEHGSVRRLQFLKNHFLLVSINKFGQLHYQDVTTGSMVGSFRTGL 238

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM+VNPFNGV++ GHSGG+V MWKPT++APL+KMLCH GPVSALAFHPNGHLMATS
Sbjct: 239 GRTDVMQVNPFNGVIATGHSGGSVAMWKPTSSAPLVKMLCHPGPVSALAFHPNGHLMATS 298

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG 180
           G E KIK+WDLRK+EVLQTLPGHAKTLDFSQKGLLA GTGSFVQILGDFSG+ NY+RYM 
Sbjct: 299 GAERKIKLWDLRKFEVLQTLPGHAKTLDFSQKGLLAYGTGSFVQILGDFSGAQNYNRYMA 358

Query: 181 HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKE 240
           HSM KGYQIGK+ FRPYEDVLGIGHSMGWSSIL+PGSGEPNFD+WVANPFETSKQRREKE
Sbjct: 359 HSMAKGYQIGKILFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKE 418

Query: 241 VRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGR 300
           VRSLLDKLPPETI LNP+KIGT+   KKKEK TK+ER+AE EAAV+A KG   K KTKGR
Sbjct: 419 VRSLLDKLPPETISLNPTKIGTLMAVKKKEKKTKKERDAEEEAAVDAAKGITMKKKTKGR 478

Query: 301 NKPSKKAKKKQELVAKAKRPFLDQQLKGEQ--------SLNTNIPQALLDFT 344
           NKP+K+ KKK E++ KAKRPFL +Q+K E+        S    +P++L  F 
Sbjct: 479 NKPTKREKKKHEIIEKAKRPFLHEQIKEEELSRKKSRLSEEVELPKSLQRFA 530

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829594|ref|XP_002882679.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328519|gb|EFH58938.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/328 (75%), Positives = 282/328 (85%), Gaps = 3/328 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           Y YIY RDGTELHCLKE G V +L+FL+NHFLLAS+NK GQL YQDVT G +V + RTG 
Sbjct: 180 YAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNKSGQLHYQDVTHGGMVASIRTGK 239

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM VNP+NGVV+LGHSGGTVTMWKPT+ APL++M CH GPVS++AFHPNGHLMATS
Sbjct: 240 GRTDVMEVNPYNGVVALGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATS 299

Query: 121 GKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKGLLAVGTGSFVQILGDFSG--SHNYSR 177
           GKE KIKIWDLRK+E +QT+   HAKTL FSQKGLLA GTGSFVQILGD SG  SHNYSR
Sbjct: 300 GKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYSR 359

Query: 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
           YM HSMVKGYQI K+ FRPYEDV+GIGHSMGWSSIL+PGSGEPNFDSWVANPFETSKQRR
Sbjct: 360 YMNHSMVKGYQIEKLMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRR 419

Query: 238 EKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKT 297
           EKEV SLLDKLPPETIML+PSKIG +R ++++EKP++ E EAE E A+EA K    KNKT
Sbjct: 420 EKEVHSLLDKLPPETIMLDPSKIGAMRPSRRREKPSRGEIEAEKEVAIEAAKSTELKNKT 479

Query: 298 KGRNKPSKKAKKKQELVAKAKRPFLDQQ 325
           KGRNKPSK+ KKK+E+V  AKR F +Q+
Sbjct: 480 KGRNKPSKRTKKKKEMVENAKRTFPEQE 507

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681364|ref|NP_187664.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|8567783|gb|AAF76355.1| hypothetical protein [Arabidopsis thaliana] gi|28393802|gb|AAO42310.1| unknown protein [Arabidopsis thaliana] gi|29824319|gb|AAP04120.1| unknown protein [Arabidopsis thaliana] gi|332641401|gb|AEE74922.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/328 (75%), Positives = 279/328 (85%), Gaps = 3/328 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           Y YIY RDGTELHCLKE G V +L+FL+NHFLLAS+N  GQL YQDVT G +V + RTG 
Sbjct: 180 YAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGK 239

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM VNP+N VV LGHSGGTVTMWKPT+ APL++M CH GPVS++AFHPNGHLMATS
Sbjct: 240 GRTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATS 299

Query: 121 GKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKGLLAVGTGSFVQILGDFSG--SHNYSR 177
           GKE KIKIWDLRK+E +QT+   HAKTL FSQKGLLA GTGSFVQILGD SG  SHNY+R
Sbjct: 300 GKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTR 359

Query: 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
           YM HSMVKGYQI KV FRPYEDV+GIGHSMGWSSIL+PGSGEPNFDSWVANPFETSKQRR
Sbjct: 360 YMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRR 419

Query: 238 EKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKT 297
           EKEV SLLDKLPPETIML+PSKIG +R +++KEKP++ E EAE E A+EA K    KNKT
Sbjct: 420 EKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKT 479

Query: 298 KGRNKPSKKAKKKQELVAKAKRPFLDQQ 325
           KGRNKPSK+ KKK+E+V  AKR F +Q+
Sbjct: 480 KGRNKPSKRTKKKKEMVENAKRTFPEQE 507

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322776|gb|AAG51373.1|AC011560_5 hypothetical protein; 61080-58687 [Arabidopsis thaliana]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/328 (75%), Positives = 279/328 (85%), Gaps = 3/328 (0%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
           Y YIY RDGTELHCLKE G V +L+FL+NHFLLAS+N  GQL YQDVT G +V + RTG 
Sbjct: 192 YAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGK 251

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
           GRTDVM VNP+N VV LGHSGGTVTMWKPT+ APL++M CH GPVS++AFHPNGHLMATS
Sbjct: 252 GRTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATS 311

Query: 121 GKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKGLLAVGTGSFVQILGDFSG--SHNYSR 177
           GKE KIKIWDLRK+E +QT+   HAKTL FSQKGLLA GTGSFVQILGD SG  SHNY+R
Sbjct: 312 GKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTR 371

Query: 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
           YM HSMVKGYQI KV FRPYEDV+GIGHSMGWSSIL+PGSGEPNFDSWVANPFETSKQRR
Sbjct: 372 YMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRR 431

Query: 238 EKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKT 297
           EKEV SLLDKLPPETIML+PSKIG +R +++KEKP++ E EAE E A+EA K    KNKT
Sbjct: 432 EKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKT 491

Query: 298 KGRNKPSKKAKKKQELVAKAKRPFLDQQ 325
           KGRNKPSK+ KKK+E+V  AKR F +Q+
Sbjct: 492 KGRNKPSKRTKKKKEMVENAKRTFPEQE 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2075750	536	AT3G10530 "AT3G10530" [Arabido	0.905	0.606	0.710	8e-124
POMBASE|SPAC959.03c	520	SPAC959.03c "U3 snoRNP-associa	0.766	0.528	0.462	3.8e-62
CGD|CAL0005357	527	orf19.4835 [Candida albicans (	0.754	0.514	0.458	7.1e-61
UNIPROTKB|Q5APD0	527	CaO19.12298 "Putative uncharac	0.754	0.514	0.458	7.1e-61
MGI|MGI:1931871	622	Wdr46 "WD repeat domain 46" [M	0.902	0.520	0.410	2.2e-57
FB|FBgn0030000	609	CG2260 [Drosophila melanogaste	0.816	0.481	0.422	1.6e-56
UNIPROTKB|O15213	610	WDR46 "WD repeat-containing pr	0.821	0.483	0.432	5.3e-56
WB|WBGene00009211	580	wdr-46 [Caenorhabditis elegans	0.724	0.448	0.425	4.3e-54
UNIPROTKB|G4NCA1	556	MGG_01100 "Small nucleolar rib	0.727	0.469	0.410	3.8e-53
ASPGD|ASPL0000002969	535	AN6265 [Emericella nidulans (t	0.816	0.547	0.381	3.5e-52

TAIR|locus:2075750 AT3G10530 "AT3G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
 Identities = 233/328 (71%), Positives = 260/328 (79%)

Query:     1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
             Y YIY RDGTELHCLKE G V +L+FL+NHFLLAS+N  GQL YQDVT G +V + RTG 
Sbjct:   180 YAYIYGRDGTELHCLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGK 239

Query:    61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             GRTDVM VNP+N VV LGHSGGTVTMWKPT+ APL++M CH GPVS++AFHPNGHLMATS
Sbjct:   240 GRTDVMEVNPYNSVVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATS 299

Query:   121 GKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKGLLAVGTGSFVQILGDFSG--SHNYSR 177
             GKE KIKIWDLRK+E +QT+   HAKTL FSQKGLLA GTGSFVQILGD SG  SHNY+R
Sbjct:   300 GKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTR 359

Query:   178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
             YM HSMVKGYQI KV FRPYEDV+GIGHSMGWSSIL+PGSGEPNFDSWVANPFETSKQRR
Sbjct:   360 YMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRR 419

Query:   238 EKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXXKGFVWKNKT 297
             EKEV SLLDKLPPETIML+PSKIG +R +++KEKP++ E            K    KNKT
Sbjct:   420 EKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKT 479

Query:   298 KGRNKPSXXXXXXXXXXXXXXRPFLDQQ 325
             KGRNKPS              R F +Q+
Sbjct:   480 KGRNKPSKRTKKKKEMVENAKRTFPEQE 507

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

POMBASE|SPAC959.03c SPAC959.03c "U3 snoRNP-associated protein Utp7 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 129/279 (46%), Positives = 173/279 (62%)

Query:     1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
             Y Y+Y+  GTE+HCLK H  V  L FL  H LL SI   G L+YQDV+ G++V   RTG+
Sbjct:   164 YVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGNAGYLKYQDVSTGQLVAEHRTGM 223

Query:    61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             G + V+  NP N V  +GH+ G VT+W P++  PL+KML H+GPV  LA + +G  M T+
Sbjct:   224 GASHVLHQNPHNAVEHVGHANGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTA 283

Query:   121 GKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY 178
             G +  +K+WDLR Y+ L +   P  A+ L  S +GLLAVG G    I  D   +     Y
Sbjct:   284 GADSLLKVWDLRTYKELHSYYTPTPAQRLTLSDRGLLAVGWGPHATIWKDALRTKQNFPY 343

Query:   179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRRE 238
             M H ++    +  + + PYED+LGIGH+ G+ SI+VPGSGEPN+DS+  +PF + KQR+E
Sbjct:   344 MNH-LLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQE 402

Query:   239 KEVRSLLDKLPPETIMLNPSKIGTV-REAKKKEKPTKQE 276
              EVR LL+KL PE I LN   IG V R A    K   +E
Sbjct:   403 TEVRQLLEKLRPEMISLNADFIGNVDRAAPSLRKAEAEE 441

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

CGD|CAL0005357 orf19.4835 [Candida albicans (taxid:5476)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 127/277 (45%), Positives = 172/277 (62%)

Query:     1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
             Y +IY+  GTELH LK+H     L FL  HFLL +    G L+Y DV+ G++V   RT L
Sbjct:   167 YTFIYDNQGTELHRLKQHIEATLLDFLPYHFLLVTAGHTGFLKYHDVSTGQLVSELRTKL 226

Query:    61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             G T  M+ NP+N V  LGH  GTV+MW P    PL+K+   +GP+  LA    G  MA +
Sbjct:   227 GPTQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLAIDREGKYMAVA 286

Query:   121 GKECKIKIWDLRKYEVLQTLPGH--AKTLDFSQKGLLAVGTGSFVQILGDF-SGSHNYSR 177
               +  +KIWD+RK++ +        A +LD S  GLL+VG G  V I  D   G H    
Sbjct:   287 AADKTLKIWDIRKFKEVDNYYSQTPASSLDISDTGLLSVGWGPHVTIWKDILKGKHQSEP 346

Query:   178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
             YM H ++ G +I K  F P+ED+LG+GH  G++SI+VPGSGE N+D+   NP+E+ KQR+
Sbjct:   347 YMNH-LIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPGSGEANYDALELNPYESVKQRQ 405

Query:   238 EKEVRSLLDKLPPETIMLNPSKIGTV--REAKKKEKP 272
             ++EVRSLLDKLP +TI L+P+ IGTV  R +  + KP
Sbjct:   406 QQEVRSLLDKLPADTIALDPNVIGTVDKRASTVRLKP 442

GO:0003674 "molecular_function" evidence=ND

GO:0030686 "90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q5APD0 CaO19.12298 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 127/277 (45%), Positives = 172/277 (62%)

Query:     1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
             Y +IY+  GTELH LK+H     L FL  HFLL +    G L+Y DV+ G++V   RT L
Sbjct:   167 YTFIYDNQGTELHRLKQHIEATLLDFLPYHFLLVTAGHTGFLKYHDVSTGQLVSELRTKL 226

Query:    61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             G T  M+ NP+N V  LGH  GTV+MW P    PL+K+   +GP+  LA    G  MA +
Sbjct:   227 GPTQAMKHNPWNAVTCLGHGNGTVSMWAPNMPEPLVKLQVARGPIRDLAIDREGKYMAVA 286

Query:   121 GKECKIKIWDLRKYEVLQTLPGH--AKTLDFSQKGLLAVGTGSFVQILGDF-SGSHNYSR 177
               +  +KIWD+RK++ +        A +LD S  GLL+VG G  V I  D   G H    
Sbjct:   287 AADKTLKIWDIRKFKEVDNYYSQTPASSLDISDTGLLSVGWGPHVTIWKDILKGKHQSEP 346

Query:   178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
             YM H ++ G +I K  F P+ED+LG+GH  G++SI+VPGSGE N+D+   NP+E+ KQR+
Sbjct:   347 YMNH-LIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPGSGEANYDALELNPYESVKQRQ 405

Query:   238 EKEVRSLLDKLPPETIMLNPSKIGTV--REAKKKEKP 272
             ++EVRSLLDKLP +TI L+P+ IGTV  R +  + KP
Sbjct:   406 QQEVRSLLDKLPADTIALDPNVIGTVDKRASTVRLKP 442

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1931871 Wdr46 "WD repeat domain 46" [Mus musculus (taxid:10090)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 137/334 (41%), Positives = 190/334 (56%)

Query:     3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
             YIY+  G ELHC++    V +L+FL  HFLLA+ ++ G L Y DV++G+IV       GR
Sbjct:   259 YIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSVGKIVTALNVRAGR 318

Query:    63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
               VM  NP+N V+ LGHS GTV++W P    PL K+LCH+G V A+A    G  MATSG 
Sbjct:   319 LSVMAQNPYNAVIHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMATSGL 378

Query:   123 ECKIKIWDLR-KYEVL--QTLPGHAKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYS 176
             + ++KI+DLR  ++ L  +TLP  A  L FSQ+GLL  G G  V I    G  S      
Sbjct:   379 DHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQ 438

Query:   177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR 236
              Y+ H +  G+  G + F P+EDVLG+GHS G++S+LVPG+ EPNFD    NP+ + KQR
Sbjct:   439 PYLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRSRKQR 496

Query:   237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXXKGFVWKNK 296
             +E EV++LL+K+P E I LNP  +  V     +++  K+ER             F  K K
Sbjct:   497 QEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQ--KKERIERLGYDPDAKAAFQPKAK 554

Query:   297 TKGRNKPSXXXXXXXXXXXXXXRPFLDQQLKGEQ 330
              KGR+  +              R  + Q L+ +Q
Sbjct:   555 QKGRSSTASLVKRKKKVMDQEHRDKVRQSLEQQQ 588

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0030000 CG2260 [Drosophila melanogaster (taxid:7227)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 130/308 (42%), Positives = 182/308 (59%)

Query:     3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
             Y Y++ GTELHC+K    V +L FL  HFLLA+ N  G   + DV++GE+VGNF TGLG 
Sbjct:   238 YFYDKKGTELHCIKRLNRVNRLDFLPYHFLLAAGNSAGYASWLDVSIGELVGNFNTGLGD 297

Query:    63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
               ++R NP NGV+ +G   G V+MW P    PL K+LCH   +SALA  P G  + T+G 
Sbjct:   298 IRMLRHNPRNGVLCIGGGRGVVSMWSPKVREPLAKLLCHSTAMSALAVEPKGQYLVTAGL 357

Query:   123 ECKIKIWDLRK--YEVLQT---LPGHAKTLDFSQKGLLAVGTGSFVQILGDF---SGSHN 174
             +  +K+WD+R   ++   T   L   A  LD SQ+G+LA+  G++++   D     GS +
Sbjct:   358 DRAVKVWDIRMLVHDKPLTHFQLRLPANELDVSQRGMLALSQGTYLETYSDLLSGGGSGD 417

Query:   175 YSR--YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFET 232
              +R  Y+       +  G + F PYEDVLG+  + G+ S+LVPGSGEPNFD+   NP+ET
Sbjct:   418 GTRLPYI-RQRCDAFVHG-LRFCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDNPYET 475

Query:   233 SKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXXKGFV 292
             SKQRRE EV +LL+K+PPE I L+P +I  V     +EK   + +           K   
Sbjct:   476 SKQRREHEVHALLEKIPPELITLDPQEITGVDAPTLQEKIDAKRKLFHLKAPRINMKS-- 533

Query:   293 WKNKTKGR 300
              ++K KGR
Sbjct:   534 -RHKMKGR 540

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|O15213 WDR46 "WD repeat-containing protein 46" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 132/305 (43%), Positives = 182/305 (59%)

Query:     3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
             +IY+  G ELHC++    V +L+FL  HFLLA+ ++ G L Y DV++G+IV       GR
Sbjct:   260 HIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGR 319

Query:    63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
              DVM  NP+N V+ LGHS GTV++W P    PL K+LCH+G V A+A    G  MATSG 
Sbjct:   320 LDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGL 379

Query:   123 ECKIKIWDLR-KYEVL--QTLPGHAKTLDFSQKGLLAVGTGSFVQIL---GDFSGSHNYS 176
             + ++KI+DLR  Y+ L  +TLP  A  L FSQ+GLL  G G  V I    G  S      
Sbjct:   380 DHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQ 439

Query:   177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR 236
              Y+ H +  G   G + F P+EDVLG+GH+ G +S+LVPG+GEPNFD   +NP+ + KQR
Sbjct:   440 PYLTHRL-SGPVHG-LQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSRKQR 497

Query:   237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXXKGFVWKNK 296
             +E EV++LL+K+P E I L+P  +  V     ++   K+E+             F  K K
Sbjct:   498 QEWEVKALLEKVPAELICLDPRALAEVDVISLEQG--KKEQIERLGYDPQAKAPFQPKPK 555

Query:   297 TKGRN 301
              KGR+
Sbjct:   556 QKGRS 560

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00009211 wdr-46 [Caenorhabditis elegans (taxid:6239)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 115/270 (42%), Positives = 166/270 (61%)

Query:     1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
             Y Y+Y+  GTELHCLK      +L+FL +HFLL   ++   L Y DV++G+ V +F T  
Sbjct:   231 YTYVYDNLGTELHCLKTMYDTARLEFLPHHFLLVGSSRNSFLNYVDVSVGKQVASFATKS 290

Query:    61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             G  DVM  NP N ++  GH+ GTV++W P +  PL+K+L H   V  +A    G+ MAT+
Sbjct:   291 GTLDVMCQNPANAIIHTGHTNGTVSLWSPNSKEPLVKILTHLSAVKGIAVDDQGNYMATT 350

Query:   121 GKECKIKIWDLRKYEVLQ--TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYS-- 176
             G + K +IWD+R +  L   +LP     +  SQK  +A   G+ VQ+   F G HN +  
Sbjct:   351 GLDRKCRIWDVRMFRQLHAYSLPFGVSNVAISQKMNVACAVGNHVQV---FRGMHNGTCK 407

Query:   177 -RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQ 235
               Y+ H+   G  +  + F P+EDVLGIGH+ G++S+LVPG+G+PN D+  +NP+ET  Q
Sbjct:   408 EPYLVHNC--GGVVTDLRFVPWEDVLGIGHAGGFTSMLVPGAGDPNVDTLRSNPYETKSQ 465

Query:   236 RREKEVRSLLDKLPPETIMLNPSKIGTVRE 265
             R+E+E++ LLDK+ PE I LNP  I  V E
Sbjct:   466 RKEREIKQLLDKIQPELISLNPDDINKVNE 495

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|G4NCA1 MGG_01100 "Small nucleolar ribonucleoprotein complex subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 110/268 (41%), Positives = 170/268 (63%)

Query:     3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
             Y+Y+R+G ELH L++H  V  ++FL  HFLL + +  G L+YQD + G+IV    + LG 
Sbjct:   200 YLYDRNGVELHNLRKHINVTHMEFLPYHFLLCTASDTGMLKYQDTSTGQIVSEVASKLGP 259

Query:    63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
             T  +  NP+N ++ +GH+ GTVT+W P ++ PL+K+L H+GPV +LA    G  M ++G+
Sbjct:   260 TQSLVQNPWNAILHMGHNNGTVTLWSPNSSDPLVKLLAHKGPVRSLAIDREGRYMVSTGQ 319

Query:   123 ECKIKIWDLRKYEVLQTLPGH--AKTLDFSQKGLLAVGTGSFVQIL-GDFS-GSHNYSRY 178
             + ++ +WD+R ++ +        A ++  S  GL AVG G+   I  G F   +    + 
Sbjct:   320 DSRMAVWDIRMFKEVNNYFTRTPASSVAISDSGLTAVGWGTHTTIWKGLFDKNAATQEKV 379

Query:   179 MGHSMV---KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQ 235
                 +    +G ++ +V + P+EDVLGIGH  G+SSILVPG+GE NFD+   NP+ET KQ
Sbjct:   380 QSPYLTWGGEGRRVERVRWCPFEDVLGIGHDGGFSSILVPGAGEANFDALEINPYETVKQ 439

Query:   236 RREKEVRSLLDKLPPETIMLNPSKIGTV 263
             R+E EV+SLL+KL PE I L+P+ +G +
Sbjct:   440 RQESEVKSLLNKLQPEMIALDPNFVGNL 467

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000002969 AN6265 [Emericella nidulans (taxid:162425)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 117/307 (38%), Positives = 173/307 (56%)

Query:     3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
             YIY+  G ELH L        L+FL  HFLLAS    G L+Y D + G++V    T +G 
Sbjct:   178 YIYDSQGVELHNLDRIVEPCFLEFLPYHFLLASAQMSGHLKYTDTSTGQLVAEIPTKVGA 237

Query:    63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
                +  NP+N ++ +GH  GTVT+W P T  PL+K L H+GPV ++A    G  M ++G+
Sbjct:   238 PTSLAQNPWNAIMHVGHQNGTVTLWSPNTQTPLVKALVHRGPVRSMAIDRQGRYMVSTGQ 297

Query:   123 ECKIKIWDLRKYEVLQTLPGH--AKTLDFSQKGLLAVGTGSFVQIL-GDFSGSHN----- 174
             + K+++WD+R Y  + +   H     +  S +GL AVG G+ V +  G F  +       
Sbjct:   298 DLKMQVWDIRMYREVHSYSCHQPGAAVSISDRGLTAVGWGTQVSVWRGLFDAATADVGKV 357

Query:   175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSK 234
              S YM      G +I  + + PYED+LG+ H  G++SI+VPG+GEPNFD+   NP+E  K
Sbjct:   358 QSPYMSWGG-DGQRIENLRWAPYEDILGVAHDKGFASIIVPGAGEPNFDALEVNPYENPK 416

Query:   235 QRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXXKGFVWK 294
             QR+E EVR+LL+KL P  I L+P+ +G V      +K +++E+           K    K
Sbjct:   417 QRQEAEVRALLNKLQPGMISLDPNFVGKVDTVS--DKRSREEKDLDRRPEDTIEK---LK 471

Query:   295 NKTKGRN 301
             N+ +GRN
Sbjct:   472 NRGRGRN 478

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.935
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•		0.922
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.917
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.902
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.898
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.897
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•		0.878
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.875
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.869
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•	•		•		0.857

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam08149	80	pfam08149, BING4CT, BING4CT (NUC141) domain	5e-47
smart01033	80	smart01033, BING4CT, BING4CT (NUC141) domain	2e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|149288 pfam08149, BING4CT, BING4CT (NUC141) domain

 Score =  153 bits (390), Expect = 5e-47
 Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 1/80 (1%)

Query: 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
           YM H    G +I  V F P+EDVLGIGHS G+SSI+VPGSGEPNFDS  ANPFET KQRR
Sbjct: 2   YMTH-NKPGSKISSVRFCPFEDVLGIGHSGGFSSIIVPGSGEPNFDSLEANPFETKKQRR 60

Query: 238 EKEVRSLLDKLPPETIMLNP 257
           E+EVRSLL+KLPPETI L+P
Sbjct: 61  EREVRSLLEKLPPETISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|198101 smart01033, BING4CT, BING4CT (NUC141) domain

 Score =  149 bits (379), Expect = 2e-45
 Identities = 54/80 (67%), Positives = 65/80 (81%), Gaps = 1/80 (1%)

Query: 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRR 237
           YM H +  G ++  V F P+EDVLGIGH+ G+SSI+VPG+GEPNFDS  ANPFET KQRR
Sbjct: 2   YMTHGL-PGSRVESVRFCPFEDVLGIGHAGGFSSIIVPGAGEPNFDSLEANPFETRKQRR 60

Query: 238 EKEVRSLLDKLPPETIMLNP 257
           E+EVRSLL+KLPPE I L+P
Sbjct: 61  EREVRSLLEKLPPELISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 8   DGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVM 66
            G  L  LK H G V  +    +   LAS +    +R  D+  GE V           V 
Sbjct: 40  TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVS 97

Query: 67  --RVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC 124
               +P   ++S      T+ +W   T   L  +  H   V+++AF P+G  +A+S ++ 
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 125 KIKIWDLRKYEVLQTLPGHAK---TLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMG 180
            IK+WDLR  + + TL GH     ++ FS  G  L   +      L D S         G
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217

Query: 181 HS 182
           H 
Sbjct: 218 HE 219

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 53/205 (25%)

Query: 7   RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD- 64
             G  +  L  H   V  + F  +  +L+S ++   ++  DV  G+ +   R   G TD 
Sbjct: 81  ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDW 137

Query: 65  VM--RVNPFNGVVS----------------------LGHSG------------------- 81
           V     +P    V+                       GH+G                   
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 82  -GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140
            GT+ +W  +T   L  +  H+  V+++AF P+G+L+A+  ++  I++WDLR  E +QTL
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 141 PGHAK---TLDFSQKGLLAVGTGSF 162
            GH     +L +S  G   + +GS 
Sbjct: 258 SGHTNSVTSLAWSPDG-KRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 11  ELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT----DV 65
               LK H G V  + F  +  LLA+ +  G ++  D+  GE+    RT  G T    DV
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---LRTLKGHTGPVRDV 57

Query: 66  MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK 125
                   + S G S  T+ +W   T   +  +  H   VS++AF P+G ++++S ++  
Sbjct: 58  AASADGTYLAS-GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116

Query: 126 IKIWDLRKYEVLQTLPGH---AKTLDFSQKGLLAVG 158
           IK+WD+   + L TL GH     ++ FS  G     
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 4e-12
 Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 7   RDGTELHCLKEHGA-VLKLQFL-RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD 64
           R G  L  L  H   V  L F      L+AS +  G +R  D++ G+++ +  +G   + 
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 65  VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKE 123
           V   +P   +++ G S GT+ +W   +++ L++ L  H   V ++AF P+G L+A+   +
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 124 CKIKIWDLRKYEVLQ--TLPGHA---KTLDFSQKGLLAVGTGS---FVQILGDFSGSHNY 175
             +++WDL   ++L   TL GH     +L FS  G L V  GS    +++  D       
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW-DLRTGKPL 364

Query: 176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212
               GHS V       VSF P   V+  G + G   +
Sbjct: 365 KTLEGHSNVLS-----VSFSPDGRVVSSGSTDGTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-09
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 12/182 (6%)

Query: 28  RNHFLLASINKFGQLRYQDV-TMGEIVGNFRTGLGRTDVMRVNPFNGV-VSLGHSGGTVT 85
            N  LLAS +  G ++  D+ T G+++            +  +P   +  S     GT+ 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQ-TLPGH 143
           +W   T  PL  +  H  PVS+LAF P+G L+ A+   +  I++WDL   ++L+ TL GH
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 144 AKTL--DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199
           + ++   FS  G  L +  +   +++    S S       GHS      +  V+F P   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS----SSVLSVAFSPDGK 297

Query: 200 VL 201
           +L
Sbjct: 298 LL 299

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 13/37 (35%), Positives = 25/37 (67%)

Query: 94  PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130
            L  +  H GPV+++AF P+G+L+A+   +  +++WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 91  TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130
           +   L  +  H GPV+++AF P+G  +A+   +  IK+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 12/135 (8%)

Query: 3   YIYN-RDGTELHCLKEH-GAVLKLQFL--RNHFLLASINKFGQLRYQDVTMGEIVGNFRT 58
            +++ R G  +  L  H G V  + F       L +S +  G ++  D++ G+ +G  R 
Sbjct: 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKLWDLSTGKCLGTLR- 216

Query: 59  GLGRTDV---MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH 115
             G  +    +  +P   +++ G   GT+ +W   T   +  +  H   V++LA+ P+G 
Sbjct: 217 --GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274

Query: 116 LMATSGKECKIKIWD 130
            +A+   +  I+IWD
Sbjct: 275 RLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 4e-06
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 8   DGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG--NFRTGLGRTD 64
             + L  L  H  +VL + F  +  LLAS +  G +R  D+  G+++     +   G   
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 65  VMRVNP-FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE 123
            +  +P  + +VS G   GT+ +W   T    +K L     V +++F P+G ++++   +
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTG-KPLKTLEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 124 CKIKIWDLRKYEVLQTLPGHAK---TLDFSQKGLLAVGTGSFVQI 165
             +++WDL    +L+ L GH     +LDFS  G       S   I
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 19  GAVLKLQFLRNHFLLASINKF-GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77
           G V  L F  +  LL S     G +R  D+  G+ +           V   +P   VVS 
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS-FSPDGRVVSS 387

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135
           G + GTV +W  +T + L  +  H   V++L F P+G  +A+   +  I++WDL+   
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 14/123 (11%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQTLPGH-------AKTLDFSQK 152
           H+  ++++AF P+G L+ +   +  IK+WDL    +++++L G                 
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 153 GLLAVGTGSFVQI-LGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210
            +L   +     + L D S      R   GHS      +  ++F P   +L  G S+  +
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES----VTSLAFSPDGKLLASGSSLDGT 179

Query: 211 SIL 213
             L
Sbjct: 180 IKL 182

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.83
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.83
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.79
KOG2048	691	consensus WD40 repeat protein [General function pr	99.79
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.76
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG2321	703	consensus WD40 repeat protein [General function pr	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
PRK02889	427	tolB translocation protein TolB; Provisional	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.72
KOG2096	420	consensus WD40 repeat protein [General function pr	99.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
PF08149	80	BING4CT: BING4CT (NUC141) domain; InterPro: IPR012	99.7
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG2139	445	consensus WD40 repeat protein [General function pr	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
KOG1963	792	consensus WD40 repeat protein [General function pr	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
KOG1963	792	consensus WD40 repeat protein [General function pr	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.5
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.49
KOG4227	609	consensus WD40 repeat protein [General function pr	99.48
PRK04043	419	tolB translocation protein TolB; Provisional	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG1334	559	consensus WD40 repeat protein [General function pr	99.36
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
KOG2314	698	consensus Translation initiation factor 3, subunit	99.34
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
KOG1334	559	consensus WD40 repeat protein [General function pr	99.3
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.25
KOG2695	425	consensus WD40 repeat protein [General function pr	99.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.23
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.09
KOG2315	566	consensus Predicted translation initiation factor	99.09
KOG2314	698	consensus Translation initiation factor 3, subunit	99.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.05
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.02
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.93
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.92
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.92
COG4946	668	Uncharacterized protein related to the periplasmic	98.92
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.91
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.89
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.88
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.86
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.82
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.81
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.8
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.79
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.79
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.76
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.74
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.74
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.71
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.68
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.67
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.65
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.58
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.54
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.51
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.5
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.41
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.4
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.38
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.32
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.31
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.23
COG3391	381	Uncharacterized conserved protein [Function unknow	98.23
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.14
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.11
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.07
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.07
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.07
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.06
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.05
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.01
PRK13616	591	lipoprotein LpqB; Provisional	98.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
PRK13616	591	lipoprotein LpqB; Provisional	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.92
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.83
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.75
KOG2395	644	consensus Protein involved in vacuole import and d	97.72
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.65
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.62
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.61
KOG3621	726	consensus WD40 repeat-containing protein [General	97.61
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.55
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.5
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.35
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.23
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.16
PHA02713	557	hypothetical protein; Provisional	97.02
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.97
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.97
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.89
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.86
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.85
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.75
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.7
KOG2444	238	consensus WD40 repeat protein [General function pr	96.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.64
PHA02713	557	hypothetical protein; Provisional	96.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.6
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.53
PRK10115	686	protease 2; Provisional	96.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.38
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.34
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	96.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.3
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.3
PRK13684	334	Ycf48-like protein; Provisional	96.25
PRK13684	334	Ycf48-like protein; Provisional	96.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.12
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	96.05
COG5167	776	VID27 Protein involved in vacuole import and degra	95.85
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.81
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.73
PHA03098	534	kelch-like protein; Provisional	95.7
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.67
PHA03098	534	kelch-like protein; Provisional	95.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.57
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	95.47
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.45
KOG2444	238	consensus WD40 repeat protein [General function pr	95.36
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.29
PHA02790	480	Kelch-like protein; Provisional	95.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.21
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.02
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.9
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.73
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.59
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.53
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.51
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.5
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.33
PHA02790	480	Kelch-like protein; Provisional	94.09
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.96
KOG2247	615	consensus WD40 repeat-containing protein [General	93.89
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.7
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.67
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.57
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.57
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.44
COG5167	776	VID27 Protein involved in vacuole import and degra	93.36
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.35
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.12
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.11
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.05
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.03
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.9
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.82
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.37
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.36
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.28
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.99
KOG2247	615	consensus WD40 repeat-containing protein [General	91.97
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.73
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.51
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.48
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.41
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.38
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.06
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.14
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.04
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.91
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.77
PRK13614	573	lipoprotein LpqB; Provisional	89.56
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.36
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.11
PRK13615	557	lipoprotein LpqB; Provisional	88.87
PRK10115	686	protease 2; Provisional	88.86
COG4590	733	ABC-type uncharacterized transport system, permeas	88.26
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.13
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.91
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	87.74
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.08
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.97
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.69
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.23
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.81
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.66
COG5276	370	Uncharacterized conserved protein [Function unknow	84.3
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.89
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.82
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.6
PRK13615	557	lipoprotein LpqB; Provisional	83.21
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.92
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.83
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	82.78
PRK13613	599	lipoprotein LpqB; Provisional	82.41
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.97

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-53  Score=366.19  Aligned_cols=338  Identities=50%  Similarity=0.834  Sum_probs=293.8

Q ss_pred             CeEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      |+||||..|.++++++.|..+..+.|.|.+.+|++++..|.+.+.|+++|+.+..+....+.+..|+.+|.+..+.+|..
T Consensus       192 y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  192 YVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             eEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEE
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVG  158 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~  158 (359)
                      +|+|.+|.+++.+++..+.+|.++|.+|+++++|+|++|+|.|..++|||+|+...++++  +.+...+++|..|++++|
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~  351 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS  351 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeee
Confidence            999999999999999999999999999999999999999999999999999998877776  457799999999999999


Q ss_pred             cCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccChhhh
Q 041916          159 TGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR  236 (359)
Q Consensus       159 ~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~~~~~  236 (359)
                      .+..+.||.....  .....+|..|..  +.+|.++.|+|..++|.+|+..|+.+++++|+++++++.|+.+||++.+|+
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQR  429 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQR  429 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhhhcc--CcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHH
Confidence            9999999974332  356678888874  448999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhcCCCCceeeCCCCCeeeecccccCCcchHHHHHHHHHHHHhhcccccccCCCCCCchhhHHHhhhhhhhc
Q 041916          237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAK  316 (359)
Q Consensus       237 ~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~k~~~~k~~~~~~  316 (359)
                      ++.+|+++|+++||++|++||+.|+.++....+.++++.+.   ............++.|++||++..|  .+++++|++
T Consensus       430 qE~EVr~LLeKippElIsLdp~~i~~vd~~~~~~~k~e~~~---~~~~~~~~~~~~pr~K~Kgr~s~~k--~k~~knvvd  504 (545)
T KOG1272|consen  430 QEKEVRSLLEKIPPELISLDPRVIGIVDEPSLEEKKDEIER---LFEEKPPEAGALPRHKTKGRNSGAK--RKKKKNVVD  504 (545)
T ss_pred             hHHHHHHHHhhCChHhEEechhhccccCcccchhhHHHHHH---HhcccCcccccCchhhhccCCchHH--HHHHHHHHH
Confidence            99999999999999999999999999998877666333221   1122233344567788999998887  444457777


Q ss_pred             ccchhHHHHHH-hhhcc-----------CcCCccccccccc
Q 041916          317 AKRPFLDQQLK-GEQSL-----------NTNIPQALLDFTC  345 (359)
Q Consensus       317 ~~~~~~~~~~~-~~~~~-----------~~~~~~~l~~~~~  345 (359)
                      ++|.++++.++ +++++           ....+.+|+||.+
T Consensus       505 ~~r~~ve~~le~~k~~q~~~~~~~~~~ea~k~~~aLdRf~~  545 (545)
T KOG1272|consen  505 DARLFVEQSLEKEKRKQAVKKEQGVKDEAAKKPSALDRFKR  545 (545)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHhhcC
Confidence            77777777554 22211           2344899999964

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-38  Score=270.09  Aligned_cols=227  Identities=20%  Similarity=0.271  Sum_probs=198.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +.||+ .++..+.+|.+|..- .++.|+|.  +..||||+.||++++|++.+..++..+.+|...|..++|+|+|.+|++
T Consensus       199 ~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~T  278 (459)
T KOG0272|consen  199 VKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGT  278 (459)
T ss_pred             eeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeee
Confidence            68999 888999999999986 99999996  568999999999999999998999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG-  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g-  153 (359)
                      +|.|.+-++||++++..+....+|...|.+++|+|||.+++|||.|..-+|||+|++.++..+.+   +|.+++|+|+| 
T Consensus       279 asfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  279 ASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY  358 (459)
T ss_pred             cccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce
Confidence            99999999999999998888889999999999999999999999999999999999999998854   57999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEcCCCCCccccccCCCcc
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFE  231 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~  231 (359)
                       ++++|.|++++|||++.. ..+.++.+|..    -|+.|+|+| .|.+|++            ++.|+++++|....+.
T Consensus       359 ~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~n----lVS~Vk~~p~~g~fL~T------------asyD~t~kiWs~~~~~  421 (459)
T KOG0272|consen  359 HLATGSSDNTCKVWDLRMR-SELYTIPAHSN----LVSQVKYSPQEGYFLVT------------ASYDNTVKIWSTRTWS  421 (459)
T ss_pred             EEeecCCCCcEEEeeeccc-ccceecccccc----hhhheEecccCCeEEEE------------cccCcceeeecCCCcc
Confidence             888999999999998765 56888899976    899999999 5655555            4455555566555554


Q ss_pred             Ch--hhhchhhhhhhh
Q 041916          232 TS--KQRREKEVRSLL  245 (359)
Q Consensus       232 ~~--~~~~~~~v~~~~  245 (359)
                      ..  .++++..|-++-
T Consensus       422 ~~ksLaGHe~kV~s~D  437 (459)
T KOG0272|consen  422 PLKSLAGHEGKVISLD  437 (459)
T ss_pred             cchhhcCCccceEEEE
Confidence            43  345566665553

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-37  Score=256.83  Aligned_cols=223  Identities=19%  Similarity=0.303  Sum_probs=198.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEE-EEEecCCCCeEEEEEcC-----CC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNFRTGLGRTDVMRVNP-----FN   72 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp-----~~   72 (359)
                      |+++|| .+..+.++.++|..- .|++|+|||..||+|+.||+|++||..+|+++ ..+.+|...|++++|.|     ..
T Consensus       138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~  217 (480)
T KOG0271|consen  138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC  217 (480)
T ss_pred             eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence            689999 899999999999996 99999999999999999999999999998765 67899999999999976     35


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEE
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDF  149 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~  149 (359)
                      ++||+++.||.|+|||+..+.++..+.+|..+|+|+.|--+| +|++|+.|++|++|+...|.+++.+.+   .|+.++.
T Consensus       218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal  296 (480)
T KOG0271|consen  218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL  296 (480)
T ss_pred             cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence            789999999999999999999999999999999999997654 899999999999999999998888854   3677766


Q ss_pred             c-----------C------------------------C-c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEE
Q 041916          150 S-----------Q------------------------K-G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGK  191 (359)
Q Consensus       150 s-----------~------------------------~-g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  191 (359)
                      |           |                        + +  +++++.|.++.+|+.....+++..+.+|+.    -|+.
T Consensus       297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~----lVn~  372 (480)
T KOG0271|consen  297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA----LVNH  372 (480)
T ss_pred             cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh----heee
Confidence            5           1                        1 2  788889999999998777778889999977    8999


Q ss_pred             EEEeeCCCEEEEEcCCCeEE------------------------------EEEcCCCCCccccccCC
Q 041916          192 VSFRPYEDVLGIGHSMGWSS------------------------------ILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       192 ~~~~p~~~~l~~~~~dg~~~------------------------------i~~~~~~d~~~~~~~~~  228 (359)
                      +.|+||++++++++-|..++                              ++++++.|.++++|++.
T Consensus       373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence            99999999999999888544                              46889999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=264.03  Aligned_cols=209  Identities=18%  Similarity=0.215  Sum_probs=192.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|+ .+-.++..|.+|..- ..++|+|+|++|+|++.|.+-++||+.++..+....+|...|.+++|+|||.++++|
T Consensus       242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG  321 (459)
T KOG0272|consen  242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG  321 (459)
T ss_pred             ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence            588999 555889999999875 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCC-c-
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQK-G-  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~-g-  153 (359)
                      +.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++++|||+|...++.++++   -|+.+.|+|. | 
T Consensus       322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~  401 (459)
T KOG0272|consen  322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY  401 (459)
T ss_pred             CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence            9999999999999999999999999999999999999999999999999999999999998865   4799999994 4 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       +++++.|++++||...+. .++..+.+|..    .|.++..+|++.++++++.|.++++|.
T Consensus       402 fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~----kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  402 FLVTASYDNTVKIWSTRTW-SPLKSLAGHEG----KVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEEcccCcceeeecCCCc-ccchhhcCCcc----ceEEEEeccCCceEEEeccCceeeecc
Confidence             888999999999996555 78899999977    899999999999988877777666654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-35  Score=268.60  Aligned_cols=201  Identities=19%  Similarity=0.274  Sum_probs=184.1

Q ss_pred             CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916            8 DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus         8 ~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      .+....++-+|.++ .++.|+|+.++|++||.|++|++|.+.+..++..+++|..||+++.|+|.|.++|+||.|++.++
T Consensus       440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL  519 (707)
T KOG0263|consen  440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL  519 (707)
T ss_pred             CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence            34455678899998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCC
Q 041916           87 WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGS  161 (359)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~  161 (359)
                      |......+++.+.+|.+.|.|+.|+|+++|+++||.|.+|++||+.+|..++.|   .++|.+++|||+|  +++++.||
T Consensus       520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence            999999999999999999999999999999999999999999999999999999   4578999999999  77788899


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .|.+||+.++ ..+..+.+|..    .|.++.|+.+|..|++|+.|..+.+|
T Consensus       600 ~I~iWDl~~~-~~v~~l~~Ht~----ti~SlsFS~dg~vLasgg~DnsV~lW  646 (707)
T KOG0263|consen  600 LIKIWDLANG-SLVKQLKGHTG----TIYSLSFSRDGNVLASGGADNSVRLW  646 (707)
T ss_pred             cEEEEEcCCC-cchhhhhcccC----ceeEEEEecCCCEEEecCCCCeEEEE
Confidence            9999998777 78888888866    89999999999877776666555554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-35  Score=246.88  Aligned_cols=248  Identities=17%  Similarity=0.234  Sum_probs=204.3

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      +-..+.+|.++ .|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||..||+|+.||+|++||+
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            34567899998 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcce-EEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc-eEEEEc
Q 041916           90 TTAAPL-IKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG-LLAVGT  159 (359)
Q Consensus        90 ~~~~~~-~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g-l~~~~~  159 (359)
                      .+++++ ..+.+|...|++++|.|     .+++||+++.||+|+|||+..+.++..+.   .+|+|+.|--+| +++++.
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~  266 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQ  266 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCC
Confidence            998765 56889999999999987     67799999999999999999999998884   579999999999 889999


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-----------eCCCE-------------------------EEE
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-----------PYEDV-------------------------LGI  203 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~~~~-------------------------l~~  203 (359)
                      |++|++|+...+ .....+.+|..    .|+.++.+           |.++.                         |++
T Consensus       267 DrtIkvw~a~dG-~~~r~lkGHah----wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS  341 (480)
T KOG0271|consen  267 DRTIKVWRALDG-KLCRELKGHAH----WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS  341 (480)
T ss_pred             CceEEEEEccch-hHHHhhcccch----heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence            999999996664 77888888865    78777666           44444                         899


Q ss_pred             EcCCCeEEE-------------------------------EEcCCCCCccccccCCC--ccChhhhchhhhhhhhhcCCC
Q 041916          204 GHSMGWSSI-------------------------------LVPGSGEPNFDSWVANP--FETSKQRREKEVRSLLDKLPP  250 (359)
Q Consensus       204 ~~~dg~~~i-------------------------------~~~~~~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~  250 (359)
                      |+.|..+.+                               +++++.|..+++|+...  |......+-..|..+...-..
T Consensus       342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence            998885443                               57788999999999753  334455566666666533333


Q ss_pred             CceeeCCCCCeeee
Q 041916          251 ETIMLNPSKIGTVR  264 (359)
Q Consensus       251 ~~i~~~~~~~~~~~  264 (359)
                      .++ ++.+...++.
T Consensus       422 RLl-VS~SkDsTLK  434 (480)
T KOG0271|consen  422 RLL-VSGSKDSTLK  434 (480)
T ss_pred             cEE-EEcCCCceEE
Confidence            343 3334344443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=228.65  Aligned_cols=212  Identities=17%  Similarity=0.201  Sum_probs=181.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--CCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--LGRTDVMRVNPF--NGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~--~~~   74 (359)
                      ++++|| .+|+..+.|.+|... .+++|+||...+++|+.|.+|.+||+- |.+..++..+  .+.|+|++|+|+  +.+
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            479999 888999999999986 999999999999999999999999987 5555555543  788999999998  689


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--CCceeEEEcCC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--GHAKTLDFSQK  152 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~i~~~~~s~~  152 (359)
                      |++++.|++|++||+++.+....+.+|.+.++.+++||||.+.++|+.||.+.+||++.++.+..+.  ..|.+++|+|+
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn  244 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN  244 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999994  47899999999


Q ss_pred             c-eEEEEcCCcEEEEcCCCCCCccceeecccC-----CCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          153 G-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM-----VKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       153 g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      . .++++.+..|+|||+.+. ..+..+.....     .......+++|+++|..|++|..|+.+.+|-
T Consensus       245 rywL~~at~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  245 RYWLCAATATSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             ceeEeeccCCceEEEeccch-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9 677777888999998765 33333221111     0133578899999999999988888776664

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-33  Score=224.74  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=174.9

Q ss_pred             eEEEe------CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916            2 PYIYN------RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         2 v~iwd------~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      +.+|+      ..|..++.|.+|... ..+..++||++.++++.|+++++||+.+|+..+.|.+|...|.+++|+||++.
T Consensus        40 ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q  119 (315)
T KOG0279|consen   40 IIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ  119 (315)
T ss_pred             EEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce
Confidence            56776      346778999999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL  147 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  147 (359)
                      |++|+.|.+|.+|++-. .+..++..  +.+.|+|+.|+|+  ..+|+++|.|++|++||+++.+....+   .+.++.+
T Consensus       120 ivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~  198 (315)
T KOG0279|consen  120 IVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV  198 (315)
T ss_pred             eecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence            99999999999999874 45555543  3789999999997  788999999999999999999888888   4568999


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccc
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSW  225 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~  225 (359)
                      ++||||  .++++.||.+.+||+..+ +.++.+...     ..|.+++|+|+..+|+.+.             +..|+||
T Consensus       199 ~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~-----~~v~sl~fspnrywL~~at-------------~~sIkIw  259 (315)
T KOG0279|consen  199 TVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAF-----DIVNSLCFSPNRYWLCAAT-------------ATSIKIW  259 (315)
T ss_pred             EECCCCCEEecCCCCceEEEEEccCC-ceeEeccCC-----CeEeeEEecCCceeEeecc-------------CCceEEE
Confidence            999999  556778999999998877 444444433     2899999999865554433             3447777


Q ss_pred             cCCC
Q 041916          226 VANP  229 (359)
Q Consensus       226 ~~~~  229 (359)
                      +..+
T Consensus       260 dl~~  263 (315)
T KOG0279|consen  260 DLES  263 (315)
T ss_pred             eccc
Confidence            7643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=218.25  Aligned_cols=207  Identities=16%  Similarity=0.226  Sum_probs=178.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      ||++|. .+|.+..+++....- +.++..|++..||+++.. .|++||+++++  ++.+|.+|...|+++.|..+|+.++
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy   99 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY   99 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE
Confidence            689999 999999999887764 999999999999998855 89999999875  6899999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQK  152 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~  152 (359)
                      +||.||+++|||++...+.+.+ .|..+|+++..+|+...|++|..+|.|++||++...+...+    ..+|.++...|+
T Consensus       100 TgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d  178 (311)
T KOG0315|consen  100 TGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD  178 (311)
T ss_pred             ecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence            9999999999999986655555 47799999999999999999999999999999998776666    347899999999


Q ss_pred             c--eEEEEcCCcEEEEcCCCCC-----CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          153 G--LLAVGTGSFVQILGDFSGS-----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 g--l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      |  ++++...|.+++|++.+..     .++..+..|..    .+..+.+||++++|+++++|..+.||
T Consensus       179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~----~il~C~lSPd~k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG----HILRCLLSPDVKYLATCSSDKTVKIW  242 (311)
T ss_pred             CcEEEEecCCccEEEEEccCCCccccceEhhheecccc----eEEEEEECCCCcEEEeecCCceEEEE
Confidence            9  4555566999999987642     23344556654    89999999999999999999877764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=223.22  Aligned_cols=197  Identities=16%  Similarity=0.225  Sum_probs=177.9

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd   88 (359)
                      ....+.+|.+- .|+.|.+| ..|+|++.|.+..+||+.+|+.+..|.+|.+.|.++.++| +++.+++|+.|+..+|||
T Consensus       137 v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD  215 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD  215 (343)
T ss_pred             eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence            35679999997 99999885 4678999999999999999999999999999999999999 899999999999999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCC
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGS  161 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~  161 (359)
                      ++.+.++++|.+|.+.|++|.|.|+|.-|++|+.|++.++||+|..+.+..+     ..+|++++||..|  ++++..|.
T Consensus       216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~  295 (343)
T KOG0286|consen  216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF  295 (343)
T ss_pred             ccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence            9999999999999999999999999999999999999999999998888877     2468999999999  67777899


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++.+||...+ +....+.+|..    .|+++..+|||..|++|+.|.+++||
T Consensus       296 ~c~vWDtlk~-e~vg~L~GHeN----RvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  296 TCNVWDTLKG-ERVGVLAGHEN----RVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             ceeEeecccc-ceEEEeeccCC----eeEEEEECCCCcEEEecchhHheeec
Confidence            9999997666 67778888876    99999999999888887666655554

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-32  Score=221.72  Aligned_cols=213  Identities=15%  Similarity=0.187  Sum_probs=186.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC------eEEEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG------EIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      +.||| .+...++-+.-...- ..++|+|.|+++|.|+.|+...||++.+.      ...+.+.+|.+.+.|+.|-+| .
T Consensus        79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~  157 (343)
T KOG0286|consen   79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-N  157 (343)
T ss_pred             EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-C
Confidence            57999 888888888877774 99999999999999999999999999865      355678999999999999885 5


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEE
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDF  149 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~  149 (359)
                      .|++||.|.++.+||+.+++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.++++|.   +.|+++.|
T Consensus       158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF  237 (343)
T ss_pred             ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence            788999999999999999999999999999999999999 99999999999999999999999999994   46899999


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      .|+|  +++++.|+++++||++.+ +.+..|....  ...+|++++|+..|++|.+|..|..+.+|.+-.+
T Consensus       238 fP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~  305 (343)
T KOG0286|consen  238 FPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG  305 (343)
T ss_pred             ccCCCeeeecCCCceeEEEeecCC-cEEeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence            9999  888899999999998876 5555555332  3457999999999999998888877666654433

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=217.06  Aligned_cols=211  Identities=16%  Similarity=0.205  Sum_probs=195.6

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .++.+..+.++ ..+.|+-||+|.++++.|.+|++|++..|.++.++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            46778888887 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--ceeeEec---cCCceeEEEcCCceEEEEcCCcEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK--YEVLQTL---PGHAKTLDFSQKGLLAVGTGSFVQ  164 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~---~~~i~~~~~s~~gl~~~~~d~~i~  164 (359)
                      ++|+.++.|.+|.+.|+.+.|+.+...+++|+.|.++++||.|+  .+|++.+   ...|.++..+...+++++.||+++
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR  168 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence            99999999999999999999999999999999999999999987  4678877   567899999988899999999999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------------------------
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI--------------------------------  212 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i--------------------------------  212 (359)
                      .||++.+ ....-+.+|      +|++++|+++++.+++++.++.+++                                
T Consensus       169 tydiR~G-~l~sDy~g~------pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth  241 (307)
T KOG0316|consen  169 TYDIRKG-TLSSDYFGH------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH  241 (307)
T ss_pred             EEEeecc-eeehhhcCC------cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence            9998877 667778887      8999999999999999999997665                                


Q ss_pred             EEcCCCCCccccccCC
Q 041916          213 LVPGSGEPNFDSWVAN  228 (359)
Q Consensus       213 ~~~~~~d~~~~~~~~~  228 (359)
                      +++|+.||.+.+|++-
T Consensus       242 V~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLV  257 (307)
T ss_pred             EEeccCCceEEEEEec
Confidence            6889999999999973

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-33  Score=234.10  Aligned_cols=212  Identities=17%  Similarity=0.234  Sum_probs=185.9

Q ss_pred             CeEEEeCCCcEEEEeccCC-Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYNRDGTELHCLKEHG-AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|+.....++.+.+|. .. ++++|+|+...+++|+.||+|+|||....+.-..+.+|.-.|.+++|+|...+|++|
T Consensus       161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg  240 (464)
T KOG0284|consen  161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG  240 (464)
T ss_pred             eEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence            5788987777777777766 44 999999999999999999999999999888888899999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--  153 (359)
                      |.|..|++||++++.++.++.+|...|..+.|+|++++|+++|.|..+++||+|+.+.+..+.   ..+.++.|+|-.  
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~  320 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES  320 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence            999999999999999999999999999999999999999999999999999999877777774   468999999965  


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                       +.++|.||.|..|.+.........-.+|..    .|++++|+|-|.+|++|+.|..+++|.-+
T Consensus       321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~----~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG----EIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ceeeccCCCceEEEeccccccccCCCccccc----ceeeeeccccceeEeecCCCcceeeeccC
Confidence             677889999999997644344444556654    89999999999888887777777777544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1e-31  Score=244.98  Aligned_cols=170  Identities=26%  Similarity=0.397  Sum_probs=162.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|. .+..++..+++|..+ +++.|+|.|.|+||+|.|++-++|......+++.+.+|.+.|.|+.|+|+..++++|
T Consensus       474 svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG  553 (707)
T KOG0263|consen  474 SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG  553 (707)
T ss_pred             ceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence            589999 888999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      |.|.+|++||+.+|..++.|.+|.++|++++|+|+|.+|++|+.||.|.+||+.++.++..+   .+.|.++.||.+|  
T Consensus       554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence            99999999999999999999999999999999999999999999999999999999988877   5678999999999  


Q ss_pred             eEEEEcCCcEEEEcCCC
Q 041916          154 LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~  170 (359)
                      ++++|.|++|++||+..
T Consensus       634 Lasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  634 LASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEecCCCCeEEEEEchh
Confidence            77788999999999654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.7e-31  Score=242.70  Aligned_cols=215  Identities=22%  Similarity=0.291  Sum_probs=186.0

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEEC-CCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDV-TMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      .+++|+ ..+.  ....+.+|... ++++|+|++.++++++.|++|+|||+ ..+..+.++.+|...|++++|+|+++++
T Consensus       182 ~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i  261 (456)
T KOG0266|consen  182 LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLL  261 (456)
T ss_pred             cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEE
Confidence            367888 5666  67778888886 99999999999999999999999999 5668999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec----cC-CceeEE
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL----PG-HAKTLD  148 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~----~~-~i~~~~  148 (359)
                      ++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++.  ++..+    .. +++++.
T Consensus       262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  341 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ  341 (456)
T ss_pred             EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence            999999999999999999999999999999999999999999999999999999999998  55555    22 579999


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      |+|++  +++++.|+.+++||+..+ .....+.+|.. ....+.+..+++.+.++++|+.|+.+.+|...+
T Consensus       342 fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  342 FSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSN-LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             ECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCC-cceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            99999  777788899999997766 67778888854 112455566677888888888888777777655

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.9e-31  Score=226.93  Aligned_cols=209  Identities=22%  Similarity=0.315  Sum_probs=190.4

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      .++||+.+|..+.+|..|.++ .++.|+..|.||++++-|+++.+||..+|.....+.-|..+-..+.|-.+ ..+++++
T Consensus       258 ~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~  336 (524)
T KOG0273|consen  258 EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSS  336 (524)
T ss_pred             EEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecC
Confidence            378999999999999999998 99999999999999999999999999999999999999888788899654 5789999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc---
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG---  153 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g---  153 (359)
                      .||.|+|+-+....|+.++.+|.++|.++.|+|.|.+|+++|.|++++||.+....+.+.+   ...|..+.|+|.|   
T Consensus       337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~  416 (524)
T KOG0273|consen  337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT  416 (524)
T ss_pred             CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999887776666   4568899999875   


Q ss_pred             --------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          154 --------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       154 --------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                              +++++.|++|++||...+ .++..+..|+.    +|.+++|+|+|+++++|+.||.+.+|.+
T Consensus       417 ~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~----pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  417 SNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQE----PVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             CCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCC----ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence                    788899999999998777 78888989877    9999999999999999999998887754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.98  E-value=3.7e-30  Score=205.44  Aligned_cols=212  Identities=14%  Similarity=0.185  Sum_probs=177.3

Q ss_pred             CeEEEe-CCCc--EEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|++|| +++.  ++.+|.+|.. ++++.|..+|+.++|||.||+++|||++...+.+.+. |..+|+++..+|+...|+
T Consensus        62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence            489999 5554  6899999955 6999999999999999999999999999877666665 669999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eeeEec---cCCcee
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY------EVLQTL---PGHAKT  146 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~---~~~i~~  146 (359)
                      +|..+|.|++||+....+...+. .-..+|.++++.|||.+|+.+...|..++|++-+.      .|+..+   .+++..
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~  220 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR  220 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence            99999999999998775554443 33457999999999999999999999999999764      344444   568999


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +.+||++  +++++.|.+++||+..+.-+....+.+|+.    .+++++||.||.||++|+.|+..++|....
T Consensus       221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r----WvWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR----WVWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc----eEEeeeeccCccEEEecCCCCceeeccccc
Confidence            9999999  788889999999996655344456667755    899999999999999988887777666443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=6.5e-31  Score=219.63  Aligned_cols=214  Identities=14%  Similarity=0.208  Sum_probs=193.7

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      +....+.+|.+- .|+++.|....|++|+.|++|+|||+.+|+...++.+|...|..+++|+-..|+++++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            345678899996 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcE
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFV  163 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i  163 (359)
                      +...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+|+...+..+.   .+|.++.+.|-.  +++++.|++|
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv  301 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV  301 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence            99999999999999999999999999999999999999999999999999884   468888888755  9999999999


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE----------------------------EEEEc
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS----------------------------SILVP  215 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~----------------------------~i~~~  215 (359)
                      ++||+..+ +....+..|..    .|.+++.+|....+++++.|.+-                            .++++
T Consensus       302 rlWDl~ag-kt~~tlt~hkk----svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~  376 (460)
T KOG0285|consen  302 RLWDLRAG-KTMITLTHHKK----SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS  376 (460)
T ss_pred             EEeeeccC-ceeEeeecccc----eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEE
Confidence            99998777 66677777765    89999999999999988887721                            24788


Q ss_pred             CCCCCccccccCC
Q 041916          216 GSGEPNFDSWVAN  228 (359)
Q Consensus       216 ~~~d~~~~~~~~~  228 (359)
                      |++.+.+..|+..
T Consensus       377 G~dng~~~fwdwk  389 (460)
T KOG0285|consen  377 GGDNGSIMFWDWK  389 (460)
T ss_pred             cCCceEEEEEecC
Confidence            9999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-31  Score=230.24  Aligned_cols=221  Identities=17%  Similarity=0.247  Sum_probs=191.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg   78 (359)
                      |.||+ .+.....++...... .+++|..||.+||.|+..|.|+|||+.+...++.+.+|..+++.+.|+|++ ..+++|
T Consensus        50 vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   50 VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence            56777 555556667777776 999999999999999999999999988877889999999999999999965 678889


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEec--cCCceeEEEcCCc-
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~s~~g-  153 (359)
                      ++|+.+++||+.+......+.+|.+.|+|.+|+| .+++++|||.||+|++||+|.. ..+.++  ..+|.++.+-|.| 
T Consensus       130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs  209 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS  209 (487)
T ss_pred             CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC
Confidence            9999999999998886667889999999999999 4668999999999999999987 677777  4589999999998 


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      +++.+.++.+++||+.++.+.+.....|..    .|+|+++..++..|++|+-||.+++|. .+.-..+.-|.+
T Consensus       210 ~iasAgGn~vkVWDl~~G~qll~~~~~H~K----tVTcL~l~s~~~rLlS~sLD~~VKVfd-~t~~Kvv~s~~~  278 (487)
T KOG0310|consen  210 LIASAGGNSVKVWDLTTGGQLLTSMFNHNK----TVTCLRLASDSTRLLSGSLDRHVKVFD-TTNYKVVHSWKY  278 (487)
T ss_pred             EEEEcCCCeEEEEEecCCceehhhhhcccc----eEEEEEeecCCceEeecccccceEEEE-ccceEEEEeeec
Confidence            887778899999999888777777777876    899999999999999999999999888 344455666665

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-30  Score=216.92  Aligned_cols=214  Identities=20%  Similarity=0.269  Sum_probs=192.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|.||| .+|+...++.+|... ..+++|+-+.||++++.|+.|+.||+...+.++.+.+|.+.|.|++.+|.-..|++|
T Consensus       174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~  253 (460)
T KOG0285|consen  174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG  253 (460)
T ss_pred             eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec
Confidence            589999 999999999999997 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-e
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-L  154 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l  154 (359)
                      +.|.+++|||+++...+..+.+|..+|.++.+.|-...+++||.|++|++||++.++...++   ...+.+++.+|.. +
T Consensus       254 grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~  333 (460)
T KOG0285|consen  254 GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL  333 (460)
T ss_pred             CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh
Confidence            99999999999999999999999999999999998888999999999999999999887777   4568999999998 6


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP  220 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~  220 (359)
                      ++.+.-..|+-|++..+ ..+..+.+|..    -|++++...| .++++|+.+|.+.+|..-++.+
T Consensus       334 fASas~dnik~w~~p~g-~f~~nlsgh~~----iintl~~nsD-~v~~~G~dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  334 FASASPDNIKQWKLPEG-EFLQNLSGHNA----IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHN  393 (460)
T ss_pred             hhccCCccceeccCCcc-chhhccccccc----eeeeeeeccC-ceEEEcCCceEEEEEecCcCcc
Confidence            66666778999998777 55566777765    7888887776 5788999999888887665543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.1e-30  Score=203.08  Aligned_cols=211  Identities=19%  Similarity=0.246  Sum_probs=189.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|+ ..|.+++++.+|..- ..++.+.|...|++|+.|..|.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|
T Consensus        40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg  119 (307)
T KOG0316|consen   40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG  119 (307)
T ss_pred             eEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence            589999 899999999999886 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cCCceeEEEcCCc--
Q 041916           79 HSGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG--  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g--  153 (359)
                      +.|.++++||.++.  +|++.+....+.|.+|.++  ++.|++|+.||+++.||+|.|.....+ ..+|++++|+++|  
T Consensus       120 sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc  197 (307)
T KOG0316|consen  120 SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC  197 (307)
T ss_pred             cccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence            99999999998764  6888888888899999874  568999999999999999999987776 6789999999999  


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      .++++.|++|++.|-.++ +.+..|.+|.. .. .=...+++.....+++|+.||.+.+|.-.
T Consensus       198 ~La~~l~stlrLlDk~tG-klL~sYkGhkn-~e-ykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  198 SLASSLDSTLRLLDKETG-KLLKSYKGHKN-ME-YKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             EEEeeccceeeecccchh-HHHHHhccccc-ce-eeeeeeecccceeEEeccCCceEEEEEec
Confidence            888899999999996565 89999999964 22 34566788888899999999998888644

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.5e-29  Score=200.59  Aligned_cols=214  Identities=16%  Similarity=0.233  Sum_probs=179.5

Q ss_pred             EEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCC---eEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916           11 ELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMG---EIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTV   84 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v   84 (359)
                      .++.+++|.+- ..++|+|- |.+|||||.|..|++|+...+   .+...+. +|...|.+++|+|.|++|++||.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            46788999994 99999998 889999999999999999853   3443342 688999999999999999999999999


Q ss_pred             EEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec---cCCceeEEEcCCc--e
Q 041916           85 TMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL---PGHAKTLDFSQKG--L  154 (359)
Q Consensus        85 ~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~---~~~i~~~~~s~~g--l  154 (359)
                      .||.-..+  +++.++.+|...|.|++|+++|++||+|+.|.+|-+|.+..   ..++..+   ...|..+.|+|..  |
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            99975543  67888999999999999999999999999999999999874   3455555   3468899999976  8


Q ss_pred             EEEEcCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE-------------------
Q 041916          155 LAVGTGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL-------------------  213 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~-------------------  213 (359)
                      ++++.|++|++|....+  -.+.+.+.+|..    .|.+++|+|.|..|++++.|+.++||                   
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN----TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPW  241 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccc----eEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeee
Confidence            88999999999985422  245677778865    89999999999999999999987774                   


Q ss_pred             -----EcCCCCCccccccCC
Q 041916          214 -----VPGSGEPNFDSWVAN  228 (359)
Q Consensus       214 -----~~~~~d~~~~~~~~~  228 (359)
                           .++++|+.|+++...
T Consensus       242 ~~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  242 DNGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             cccceEeccCCCEEEEEEec
Confidence                 456777778777643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.2e-31  Score=224.77  Aligned_cols=193  Identities=20%  Similarity=0.311  Sum_probs=170.6

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      ..++.|..+ +++.|++++.+++||+.+|.|++|+..-.. +..+..| ...|++++|+|....++++|.||+|+|||..
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~  210 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR  210 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence            345679888 999999999999999999999999987444 4455554 4899999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEE
Q 041916           91 TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQI  165 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i  165 (359)
                      ..+....+.+|.-.|.++.|+|.-.+|+++|.|..|++||.+++.++.++   ...|..+.|+|++  |+++|.|..+++
T Consensus       211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence            99888889999999999999999999999999999999999999998888   5578999999999  888999999999


Q ss_pred             EcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEE
Q 041916          166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSS  211 (359)
Q Consensus       166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~  211 (359)
                      ||+++. +.+..+.+|..    .|+++.|+|-. .+|++|+.||.+.
T Consensus       291 ~DiR~m-kEl~~~r~Hkk----dv~~~~WhP~~~~lftsgg~Dgsvv  332 (464)
T KOG0284|consen  291 FDIRTM-KELFTYRGHKK----DVTSLTWHPLNESLFTSGGSDGSVV  332 (464)
T ss_pred             EehhHh-HHHHHhhcchh----hheeeccccccccceeeccCCCceE
Confidence            998754 67788888876    89999999964 5778888888433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.3e-29  Score=227.19  Aligned_cols=210  Identities=19%  Similarity=0.253  Sum_probs=185.9

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +-||+ .+-.-+...++|... ++++++|||+++|||+.||.|+|||..+|-|..+|..|.+.|+.+.|+..|+.++++|
T Consensus       332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS  411 (893)
T KOG0291|consen  332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS  411 (893)
T ss_pred             EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence            45788 666667777889887 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEec---cCCceeEEEcCCc-
Q 041916           80 SGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-  153 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-  153 (359)
                      -||+|+.||+......+++.. .+-...|++..|.|..+..|+.|. .|.+|++.+|+.+-.+   +++|.+++|+|+| 
T Consensus       412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS  491 (893)
T ss_pred             cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence            999999999999988888874 344678999999999999999886 6999999999998888   6789999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                       +++++.|.+|++||+........++....     .+.+++|.|+|+.|++++.||.+.+|.+-
T Consensus       492 ~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSSSGTVETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             eEEeccccceEEEEEeeccCceeeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence             88899999999999766544555554332     69999999999999999999999998753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=217.39  Aligned_cols=209  Identities=12%  Similarity=0.146  Sum_probs=186.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +|++|| .+|+....+++|.+. ..++|+..|.+|++++.|-.+.+||..+ .+++....+|...|.+++|-|.|.+|++
T Consensus       131 tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS  210 (406)
T KOG0295|consen  131 TIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS  210 (406)
T ss_pred             eEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee
Confidence            589999 999999999999997 9999999999999999998899999986 4677788899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC--
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK--  152 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~--  152 (359)
                      ++.|.+|+.|++.++-++.+|.+|+..|..+..+.||.++|+++.|.+|++|-+.+..+...+   +.+|-+++|-|.  
T Consensus       211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~  290 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS  290 (406)
T ss_pred             cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc
Confidence            999999999999999999999999999999999999999999999999999999998665555   557888888652  


Q ss_pred             ------------c---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          153 ------------G---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       153 ------------g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                                  +   +.+++.|++|++||+.++ .++.++.+|..    .|.+++|+|.|+||+++.+|+.+++|.
T Consensus       291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdn----wVr~~af~p~Gkyi~ScaDDktlrvwd  362 (406)
T KOG0295|consen  291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDN----WVRGVAFSPGGKYILSCADDKTLRVWD  362 (406)
T ss_pred             CcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccc----eeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence                        2   667788999999999888 78888888866    999999999999888876666555554

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.1e-28  Score=225.50  Aligned_cols=201  Identities=13%  Similarity=0.212  Sum_probs=166.7

Q ss_pred             EeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           14 CLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      .+.+|.+. ++++|+| ++.+|++|+.|++|++||+.++       .++..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            46788886 9999999 7899999999999999999765       3567888999999999999985 69999999999


Q ss_pred             EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----CceeEEEcCCc--eEEE
Q 041916           84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----HAKTLDFSQKG--LLAV  157 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~i~~~~~s~~g--l~~~  157 (359)
                      |+|||+.++..+..+.+|.+.|.+++|+|+|.+|++++.|++|++||+++++.+..+.+    .+..+.|++++  ++++
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            99999999998889999999999999999999999999999999999999988877733    23567888886  6665


Q ss_pred             E----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEcCC
Q 041916          158 G----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVPGS  217 (359)
Q Consensus       158 ~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~~~  217 (359)
                      +    .|+.|++||+.+...+......+   ....+....|++++.+|++|+ .||.+++|....
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            5    36899999987654444433322   122466678999999988877 488888876544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.2e-29  Score=223.03  Aligned_cols=213  Identities=18%  Similarity=0.213  Sum_probs=195.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|.||| .+...+..+.-..-+ ++..|-+..+.+++|+.|..|+||+..+++.+..|..|..-|.|++.+|...+++++
T Consensus        36 ~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts  115 (794)
T KOG0276|consen   36 DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS  115 (794)
T ss_pred             eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec
Confidence            478999 888899999887777 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc
Q 041916           79 HSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g  153 (359)
                      |+|-+|++||-... .+.++|.+|...|.+++|+| |.+.+|++|.|++|++|.+....+..++.+   .|+|+++-+.|
T Consensus       116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence            99999999998754 67889999999999999999 788999999999999999999888888844   68999999988


Q ss_pred             ----eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 ----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 ----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                          +++++.|.+++|||..+. .+++++.+|..    .|..++|+|.-.++++|+.||+++||.+.+.
T Consensus       196 dkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~----Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTN----NVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             CcceEEecCCCceEEEeecchH-HHHHHhhcccc----cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence                788888999999998776 78999999976    8999999999999999999998888876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.2e-30  Score=220.93  Aligned_cols=210  Identities=20%  Similarity=0.313  Sum_probs=181.6

Q ss_pred             eEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916            2 PYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSL   77 (359)
Q Consensus         2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s   77 (359)
                      |+||+  .++.+++++.+|..+ ..++|+++|..++|+|.|+.|++||+.+|+++..+... ..++|+.|+|++ +.+++
T Consensus       239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~  317 (503)
T KOG0282|consen  239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLV  317 (503)
T ss_pred             EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEE
Confidence            78999  679999999999998 99999999999999999999999999999999998754 578999999998 89999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g  153 (359)
                      |+.|+.|+.||+++++.++.+..|-+.|..|.|-++|..+++++.|+++++|+.+..-++...    .....++..+|++
T Consensus       318 G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~  397 (503)
T KOG0282|consen  318 GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG  397 (503)
T ss_pred             ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence            999999999999999999999999999999999999999999999999999999987766555    2356899999999


Q ss_pred             --eEEEEcCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 --LLAVGTGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 --l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        +++-+.|+.|.+|.+...  ......+.+|.. .+. -..+.|||||.+|++|+.+|.+.+|.
T Consensus       398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGy-s~~v~fSpDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGY-SCQVDFSPDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CeehhhccCceEEEEecccccccCHhhhhcceec-cCc-eeeEEEcCCCCeEEeecCCccEEEee
Confidence              555578999999985432  234456778865 444 46789999999999988888666653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=211.17  Aligned_cols=208  Identities=17%  Similarity=0.220  Sum_probs=185.8

Q ss_pred             eEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +.+||  ....++..+.+|... .++.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||.+++++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence            56788  234567778889887 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCceeeEecc--
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---------------GHLMATSGKECKIKIWDLRKYEVLQTLP--  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  141 (359)
                      +.|.+|++|-+.++++...+..|.-+|.+++|.|.               +.++.+++.|++|++||+.++.++.++.  
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh  333 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH  333 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence            99999999999999999999999999999999772               2589999999999999999999999994  


Q ss_pred             -CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          142 -GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       142 -~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       ..|..++|+|.|  ++++..|+++++||+.+. .+...+..|..    -++++.|+.+..++++|+-|..+.+|-
T Consensus       334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~h----fvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcc----eeEEEecCCCCceEEeccccceeeeee
Confidence             469999999999  788889999999998776 67777777766    899999999998888877777666553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.3e-28  Score=211.37  Aligned_cols=210  Identities=19%  Similarity=0.293  Sum_probs=168.0

Q ss_pred             CeEEEe-CCCcEEEEec---cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--------------------
Q 041916            1 YPYIYN-RDGTELHCLK---EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--------------------   55 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~---~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------   55 (359)
                      .|+||| .+|+.+..|.   +|.+. .+++|+||+..++|++.|.+++|||+.+++++.+                    
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~  292 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH  292 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence            478999 9999999998   78887 9999999999999999999999999987655443                    


Q ss_pred             -----------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-----------EEEecc
Q 041916           56 -----------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL-----------IKMLCH  101 (359)
Q Consensus        56 -----------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~-----------~~~~~h  101 (359)
                                             +.+|...|+++..+|++.+|++|+.||.|.-|+..++..-           ..+..+
T Consensus       293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~  372 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS  372 (603)
T ss_pred             EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence                                   4589999999999999999999999999999997654221           101000


Q ss_pred             C----------------------------------------------------------------------CCeEEEEEc
Q 041916          102 Q----------------------------------------------------------------------GPVSALAFH  111 (359)
Q Consensus       102 ~----------------------------------------------------------------------~~v~~i~~~  111 (359)
                      .                                                                      -...+++++
T Consensus       373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~  452 (603)
T KOG0318|consen  373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS  452 (603)
T ss_pred             CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence            0                                                                      012679999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceee-----EeccCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCC
Q 041916          112 PNGHLMATSGKECKIKIWDLRKYEVL-----QTLPGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMV  184 (359)
Q Consensus       112 ~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~  184 (359)
                      |++..+++|+.|+.|++|.+......     ....++|+++++||++ +++++ ..+.+.+||..+.......+.-|.. 
T Consensus       453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta-  531 (603)
T KOG0318|consen  453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA-  531 (603)
T ss_pred             CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee-
Confidence            99999999999999999999875532     2237899999999999 55544 5689999998777554444444654 


Q ss_pred             CCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          185 KGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       185 ~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                         .|.+++|+|+...+++|+.|-.+.+|.
T Consensus       532 ---kI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  532 ---KINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             ---eEEEEEeCCCceEEEeccccceEEEEE
Confidence               999999999999999988887665543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=9.6e-28  Score=201.17  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=182.8

Q ss_pred             EEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      +||+ .+|.....+.+|.+. +++.|+.+|.+||||+.+|.|+||...++.....+...-..+.=|.|+|.+..|++|+.
T Consensus        89 flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~  168 (399)
T KOG0296|consen   89 FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST  168 (399)
T ss_pred             EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC
Confidence            7999 999999999999997 99999999999999999999999999999988888766677888999999999999999


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------------------
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------------------  140 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------  140 (359)
                      ||.|.+|.+.+......+.+|..++++-.|.|+|+.++++..||+|++||+.++.++..+                    
T Consensus       169 DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~  248 (399)
T KOG0296|consen  169 DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL  248 (399)
T ss_pred             CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence            999999999988888889999999999999999999999999999999999876654431                    


Q ss_pred             ------------------------------------------------------------------------------cC
Q 041916          141 ------------------------------------------------------------------------------PG  142 (359)
Q Consensus       141 ------------------------------------------------------------------------------~~  142 (359)
                                                                                                    +.
T Consensus       249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~  328 (399)
T KOG0296|consen  249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED  328 (399)
T ss_pred             EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC
Confidence                                                                                          11


Q ss_pred             CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          143 HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       143 ~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|..+.|.++. +++++.+|.|+.||.+++ .....|.+|..    .|.+++++|+++.+++++.|+...+|-.
T Consensus       329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  329 GVTKLKWLNTDYLLTACANGKVRQWDARTG-QLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             ceEEEEEcCcchheeeccCceEEeeecccc-ceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            23444566644 788888999999998777 78889999987    9999999999999999999888777653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=3.3e-28  Score=225.79  Aligned_cols=201  Identities=24%  Similarity=0.371  Sum_probs=175.8

Q ss_pred             CeEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +|+|||  ..+..+.++.+|... ++++|+|+++++++|+.|++|+|||+.+++++..+.+|.+.|++++|++++++|++
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence            589999  455889999999997 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCc--ceEEEeccCCC--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC------ceeE
Q 041916           78 GHSGGTVTMWKPTTAA--PLIKMLCHQGP--VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH------AKTL  147 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~--~~~~~~~h~~~--v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------i~~~  147 (359)
                      ++.||.|++||+.++.  +...+..+...  ++++.|+|++.++++++.|+.+++||++.+.++..+.++      +.+.
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence            9999999999999998  55667666555  999999999999999999999999999999888877432      2333


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc-cCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH-SMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ..++.+  +++++.|+.|++||+.++ ..+..+.+| ..    .+..+.|+|...++++++.
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~----~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKA----AVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCC----ceeccccCCCcCeeeecCc
Confidence            446666  788889999999998775 677778888 44    8999999999988877663

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=219.84  Aligned_cols=209  Identities=20%  Similarity=0.271  Sum_probs=186.5

Q ss_pred             EEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      .+|. .+-.+++.+.-.... ..++|+..|..||.|+. -|.+-||+..+...+...++|...+++++++|||+++|+|+
T Consensus       290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~  369 (893)
T KOG0291|consen  290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA  369 (893)
T ss_pred             EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence            4677 677788888877555 99999999999998875 48999999999988999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--C--CceeEEEcCCc-e
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--G--HAKTLDFSQKG-L  154 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~--~i~~~~~s~~g-l  154 (359)
                      .||.|+|||..++-++.+|..|.+.|+.+.|+..|+.++++|.||+|+.||+..++..++|.  .  ...|++..|.| +
T Consensus       370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999983  3  34899999999 4


Q ss_pred             E-EEEcCC-cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          155 L-AVGTGS-FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       155 ~-~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      + +++.|. .|.+|++.++ +.+..+.+|.+    ||.+++|+|.+..|++|+.|.++++|..-
T Consensus       450 V~AG~~d~F~IfvWS~qTG-qllDiLsGHEg----PVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTG-QLLDILSGHEG----PVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             EEeeccceEEEEEEEeecC-eeeehhcCCCC----cceeeEEccccCeEEeccccceEEEEEee
Confidence            4 445554 7999999888 78889999977    99999999999999999999888886443

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.8e-27  Score=219.45  Aligned_cols=212  Identities=15%  Similarity=0.110  Sum_probs=165.5

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcC
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE--------IVGNFRTGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~sp   70 (359)
                      |.+|+ .....+..+.+|.+. .+++|+|+ +.+||||+.||+|++||+.++.        ++..+.+|...|.+++|+|
T Consensus        56 I~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P  135 (568)
T PTZ00420         56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP  135 (568)
T ss_pred             EEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence            56777 445567889999886 99999997 7899999999999999997642        3456788999999999999


Q ss_pred             CCCE-EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---Ccee
Q 041916           71 FNGV-VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKT  146 (359)
Q Consensus        71 ~~~~-l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~  146 (359)
                      ++.. |++|+.||+|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+.+   .+.+
T Consensus       136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s  214 (568)
T PTZ00420        136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT  214 (568)
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence            9865 5789999999999999988777665 667899999999999999999999999999999998887743   2222


Q ss_pred             -----EEEcCCc--eEEEEcCC----cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          147 -----LDFSQKG--LLAVGTGS----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       147 -----~~~s~~g--l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                           ..|++++  ++++|.++    .|+|||+.....++..+..+.  ..+.+......+++.++++|+.|+.+++|..
T Consensus       215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence                 2345776  77777664    799999876545554443322  1223444444556888889889998888875


Q ss_pred             C
Q 041916          216 G  216 (359)
Q Consensus       216 ~  216 (359)
                      .
T Consensus       293 ~  293 (568)
T PTZ00420        293 S  293 (568)
T ss_pred             c
Confidence            4

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.1e-28  Score=201.94  Aligned_cols=204  Identities=18%  Similarity=0.221  Sum_probs=176.7

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      +..+.+|.+. +.+.|+|+|.+||||+.|..|.+|++. ..+-...+++|.+.|..+.|.+|++.|++++.|.+|+.||+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            3456789887 999999999999999999999999965 34556788899999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                      .+|+.+..+.+|.+-|+++.-+.-|. ++.+++.|+++++||+|+..+++++  +.+++++.|...+  +++++-|+.|+
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence            99999999999999999988554444 5678889999999999999999999  5689999999988  99999999999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFET  232 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~  232 (359)
                      +||++.+ .....+.+|..    +|+.+..+|+|.++.+-+.            |..+++|++.||..
T Consensus       200 vWd~r~~-d~~~~lsGh~D----tIt~lsls~~gs~llsnsM------------d~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  200 VWDLRKN-DGLYTLSGHAD----TITGLSLSRYGSFLLSNSM------------DNTVRVWDVRPFAP  250 (338)
T ss_pred             eeccccC-cceEEeecccC----ceeeEEeccCCCccccccc------------cceEEEEEecccCC
Confidence            9998776 67888888876    9999999999987766444            55566666665543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4.8e-27  Score=204.68  Aligned_cols=212  Identities=24%  Similarity=0.356  Sum_probs=184.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|++|+ .++.....+..|... ..+.|+|++.+|++++.+|.|.+||+.+++.+..+..|...+.++.|+|++.+++++
T Consensus        32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  111 (289)
T cd00200          32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS  111 (289)
T ss_pred             EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence            378999 777778888888887 799999999999999999999999999888888899999899999999998899988


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      +.||.|.+||+.+++....+..|...|.+++|+|++.++++++.|+.|.+||+++++++..+   ...+.+++|+|++  
T Consensus       112 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence            88999999999988888888889999999999999999998888999999999988877766   3478999999998  


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +++++.++.|.+||+..+ .....+..|..    .+.+++|+|++.++++++.+|.+.+|....
T Consensus       192 l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         192 LLSSSSDGTIKLWDLSTG-KCLGTLRGHEN----GVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             EEEecCCCcEEEEECCCC-ceecchhhcCC----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            777778999999997665 45555555544    899999999988888887788777776543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=5.4e-27  Score=204.38  Aligned_cols=208  Identities=23%  Similarity=0.387  Sum_probs=181.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|++|+ .++..+..+..|... .++.|+|++.++++++.++.|.+||+.+++....+..|...+.+++|+|++.+++++
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  153 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS  153 (289)
T ss_pred             eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence            478999 666788888888865 999999999999988889999999999999999999999999999999999999988


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-e
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-L  154 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l  154 (359)
                      +.||.|.+||+++++++..+..|...|.++.|+|++..+++++.|+.|.+||++++.++..+   ...+.+++|+|++ +
T Consensus       154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (289)
T cd00200         154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL  233 (289)
T ss_pred             cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence            88999999999999988889999999999999999999999999999999999998887777   4578999999988 5


Q ss_pred             EEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          155 LAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       155 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++++. ++.|++||+.++ .....+..|..    .|.+++|+|++.+|++++.||.+.+|
T Consensus       234 ~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         234 LASGSEDGTIRVWDLRTG-ECVQTLSGHTN----SVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             EEEEcCCCcEEEEEcCCc-eeEEEccccCC----cEEEEEECCCCCEEEEecCCCeEEec
Confidence            55554 999999997665 45555555544    89999999999999998888866665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2.9e-27  Score=206.76  Aligned_cols=212  Identities=17%  Similarity=0.283  Sum_probs=189.5

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +++|| +|.-+-.+.+|... ++++|-|.. ..++||+.|++|.+|+=...+.-.+++.|...|+|+.|+|||..+++.+
T Consensus       131 ~F~~D-SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  131 VFLWD-SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEEec-CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence            45676 57777889999998 999999974 6799999999999999877788889999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------CCceeEEEc
Q 041916           80 SGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------GHAKTLDFS  150 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~i~~~~~s  150 (359)
                      .||.|.+||-.+++.+..+.   +|.+.|.+++|+||+..++|++.|.++++||+.+.+++.++.      ..-..+.|-
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq  289 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ  289 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence            99999999999999999988   999999999999999999999999999999999999999882      223556677


Q ss_pred             CCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          151 QKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       151 ~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      .+.+++++.+|+|.+++.... .++..+.+|..    .|+++..+|++.+|++|+.||.+.-|..+++.
T Consensus       290 kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK----~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  290 KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK----SITALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             CCeEEEEEcCcEEEEecccCC-Chhheeccccc----ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence            566999999999999997666 48888999977    89999999999999999999988888776654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-26  Score=187.75  Aligned_cols=206  Identities=17%  Similarity=0.192  Sum_probs=170.2

Q ss_pred             CeEEEeCC-C---cEEEEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCC
Q 041916            1 YPYIYNRD-G---TELHCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd~~-g---~~~~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      .|+||+.. +   .+...+. +|... ++++|+|.|++||++|.|.++.||.-..+  +++..+.+|...|-|++|+++|
T Consensus        38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence            37899933 3   2333443 57776 99999999999999999999999997654  6889999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CceeeEecc---CC
Q 041916           73 GVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR---KYEVLQTLP---GH  143 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~---~~  143 (359)
                      ++||+++.|..|-+|.+..+   .+...++.|...|..+.|+|...+|+++|.|.+|++|+-.   .+.++.++.   +.
T Consensus       118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T  197 (312)
T KOG0645|consen  118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT  197 (312)
T ss_pred             CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce
Confidence            99999999999999998744   4677788999999999999999999999999999999766   356788884   36


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      |-+++|+|.|  +++++.|++++||-..+.     .-..|    ...+..+.|.  ...|++++.|+.+.+|....
T Consensus       198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~----sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMH----SRALYDVPWD--NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             EEEEEecCCCceEEEecCCcceEeeeeccC-----cchhc----ccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence            8999999999  888999999999975432     11122    2378888888  56788888888888877553

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=195.70  Aligned_cols=216  Identities=20%  Similarity=0.288  Sum_probs=184.0

Q ss_pred             eEEEeCCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916            2 PYIYNRDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSL   77 (359)
Q Consensus         2 v~iwd~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s   77 (359)
                      |.+|+..|.  -...+++|.++ ..+.|.+|++.|+++|.|.+|+.||+.+|++...+++|...|+++.-+.-| .++.+
T Consensus        71 I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S  150 (338)
T KOG0265|consen   71 IVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS  150 (338)
T ss_pred             EEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe
Confidence            789994444  36788899998 999999999999999999999999999999999999999999999855445 57788


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG-  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g-  153 (359)
                      |+.||+++|||+++..++.++. .+-+++++.|..++..+.+|+-|+.|++||+|.....+.+.+   +|+.+..+|+| 
T Consensus       151 gsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs  229 (338)
T KOG0265|consen  151 GSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS  229 (338)
T ss_pred             cCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence            9999999999999988887764 356799999999999999999999999999999999998854   68999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCC---CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 -LLAVGTGSFVQILGDFS---GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                       +++-+.|.++++||.+.   +..++..+.+|.....-....++|+|+++.+.+|+.|.++.+|.+.+.
T Consensus       230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence             88889999999999754   334466677765333445678899999999999999988888876553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.2e-26  Score=230.30  Aligned_cols=212  Identities=15%  Similarity=0.206  Sum_probs=175.6

Q ss_pred             CeEEEe-CC----Cc----EEEEeccCCCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916            1 YPYIYN-RD----GT----ELHCLKEHGAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~----g~----~~~~l~~h~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp   70 (359)
                      +|+||+ ..    +.    .+..+.++..+.+++|+|. +.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+|
T Consensus       506 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p  585 (793)
T PLN00181        506 KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS  585 (793)
T ss_pred             EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC
Confidence            478998 32    11    2334555655689999884 78999999999999999999999999999999999999997


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCc
Q 041916           71 -FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH-PNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHA  144 (359)
Q Consensus        71 -~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i  144 (359)
                       ++.+|++|+.||+|++||++++..+..+..+ ..|.++.|+ ++|.+|++|+.|+.|++||+++.. ++..+   ...|
T Consensus       586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V  664 (793)
T PLN00181        586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV  664 (793)
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence             7889999999999999999999888888754 679999995 579999999999999999999865 44444   4578


Q ss_pred             eeEEEcCCc-eEEEEcCCcEEEEcCCCC-----CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          145 KTLDFSQKG-LLAVGTGSFVQILGDFSG-----SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      .++.|.+.. +++++.|+.|++||+...     ..++..+.+|..    .+..++|+|++.+|++|+.||.+.+|....
T Consensus       665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~----~i~~v~~s~~~~~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN----VKNFVGLSVSDGYIATGSETNEVFVYHKAF  739 (793)
T ss_pred             EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC----CeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence            999998555 888999999999997643     134556666654    789999999999999999999999987543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=205.72  Aligned_cols=203  Identities=18%  Similarity=0.296  Sum_probs=170.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      ||.||| .+-.++..+.+|++. .|+.|.  .+.+++|+.|.+|++||+.+|+++.++-+|...|..+.|+  +.+++++
T Consensus       218 TikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtc  293 (499)
T KOG0281|consen  218 TIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTC  293 (499)
T ss_pred             ceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEe
Confidence            689999 788889999999997 999995  5699999999999999999999999999999999999997  4699999


Q ss_pred             eCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCc---eeEEEcCC
Q 041916           79 HSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA---KTLDFSQK  152 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i---~~~~~s~~  152 (359)
                      |.|.++.+||+.....   ...+.+|...|+.+.|+  .+++++++.|.+|++|++.+++.++++.++-   .|+.+...
T Consensus       294 SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~r  371 (499)
T KOG0281|consen  294 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR  371 (499)
T ss_pred             cCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCe
Confidence            9999999999987653   34466999999999985  5699999999999999999999999997654   44444333


Q ss_pred             ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916          153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                      -++++++|++|++||...+ .++..+.+|..    -|.++.|..  +.            +++|+.||.+++|+++
T Consensus       372 lvVSGSSDntIRlwdi~~G-~cLRvLeGHEe----LvRciRFd~--kr------------IVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  372 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVRCIRFDN--KR------------IVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             EEEecCCCceEEEEecccc-HHHHHHhchHH----hhhheeecC--ce------------eeeccccceEEEEecc
Confidence            2778889999999998776 78889999966    799999974  33            4455666666666654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.5e-28  Score=212.90  Aligned_cols=216  Identities=16%  Similarity=0.222  Sum_probs=184.5

Q ss_pred             cEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           10 TELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      ..++++.+|+.. +++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|..++|+++|..+++++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            357889999986 9999999 789999999999999999987 8899999999999999999999999999999999999


Q ss_pred             EeCCCCcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcC
Q 041916           87 WKPTTAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTG  160 (359)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d  160 (359)
                      ||+.+|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+   -+.|..+.|-++|  +++.+.|
T Consensus       285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            99999999988863 3467899999988 88999999999999999999999888   3678999999999  8888899


Q ss_pred             CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE------------------------------
Q 041916          161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS------------------------------  210 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~------------------------------  210 (359)
                      +.++||+.... .++.....+   ....+.++..+|++.++++-+.|..+                              
T Consensus       364 ks~riWe~~~~-v~ik~i~~~---~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  364 KSVRIWENRIP-VPIKNIADP---EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             ccEEEEEcCCC-ccchhhcch---hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            99999996655 233222222   11267788889999888877766633                              


Q ss_pred             -----EEEEcCCCCCccccccCCCc
Q 041916          211 -----SILVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       211 -----~i~~~~~~d~~~~~~~~~~~  230 (359)
                           ..+++|.++|.+.+|+.++.
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhh
Confidence                 34789999999999998754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=195.92  Aligned_cols=209  Identities=18%  Similarity=0.286  Sum_probs=177.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      -+||| .+|.+++.|.+-.-+.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|++++
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa  162 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence            36899 899999998654445999999999999999999999999998754 5678899999999999998888999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eE
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LL  155 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~  155 (359)
                      .|++|++||.+++..+.++. .+.+|+++.++++|.+|.++ ..+.|.+||..+..++..+  +..|.+.+++|+.  ++
T Consensus       163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV  240 (334)
T ss_pred             cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence            99999999999999998886 46789999999999877665 4578999999999999888  6678999999987  77


Q ss_pred             EEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +++.|..++.||..++. .+..+ .+|.+    +|.++.|+|+|...++|+.||++++|.+..
T Consensus       241 aGged~~~~kfDy~Tge-Ei~~~nkgh~g----pVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGE-EIGSYNKGHFG----PVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ecCcceEEEEEeccCCc-eeeecccCCCC----ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            77889999999988884 44444 56644    999999999998777777776666665543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.7e-28  Score=204.30  Aligned_cols=211  Identities=19%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             EEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-
Q 041916           12 LHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK-   88 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd-   88 (359)
                      +..|.+|.+- .|++=+|.. ..++||+.||.|+|||+.+..+...+.+|.+.|..|++..  ..+++++.|.+|+.|- 
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            4567888875 999999976 7899999999999999999999999999999999999876  5566777777666664 


Q ss_pred             -------------------------------------CCCCcceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 041916           89 -------------------------------------PTTAAPLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWD  130 (359)
Q Consensus        89 -------------------------------------~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd  130 (359)
                                                           ..-..|+..+....+.|.++.|+|- ...|++|+.|+.|.+||
T Consensus       137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence                                                 3333455556655677899999994 45678888999999999


Q ss_pred             cCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          131 LRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       131 ~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      +|++.+++.+  ....+.|+|+|.+  +++++.|..++.||++.-..++..+.+|..    .|.++.|+|.|+-+++|+.
T Consensus       217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs----AV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS----AVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccce----eEEEeccCCCcchhccccc
Confidence            9999998877  5567899999977  778889999999999888788888888865    8999999999999999988


Q ss_pred             CCeEEE-------------------------------EEcCCCCCccccccCC
Q 041916          207 MGWSSI-------------------------------LVPGSGEPNFDSWVAN  228 (359)
Q Consensus       207 dg~~~i-------------------------------~~~~~~d~~~~~~~~~  228 (359)
                      |..++|                               +++|++|+++++|..+
T Consensus       293 DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  293 DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            886665                               4667777777777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.9e-27  Score=210.62  Aligned_cols=207  Identities=13%  Similarity=0.162  Sum_probs=182.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNP-FNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~   76 (359)
                      .|+||+ .++..++.|..|.+- +|++.+|.-.+++|+|.|-+|++||...+ .+.++|.+|..-|.+++|+| |.+.+|
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence            489999 999999999999997 99999999999999999999999999764 68889999999999999999 568999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ  151 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~  151 (359)
                      ++|-|++|++|.+.+..+..++.+|...|+|+.+-+  |-.+|++|+.|.+|++||..+..|++++.|   .|+.+.|+|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP  237 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence            999999999999999999999999999999999987  447999999999999999999999999965   478999999


Q ss_pred             Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      .-  +++|+.||+++||+..+- .....+. .   ....+++++-.+.+..+++|...|.+.+
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty-~lE~tLn-~---gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTY-KLEKTLN-Y---GLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCcEEEEecCCccEEEecCcce-ehhhhhh-c---CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            88  788899999999995543 2222222 2   2338999999999999999999996544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=9.3e-27  Score=201.11  Aligned_cols=207  Identities=20%  Similarity=0.328  Sum_probs=185.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      ++.||| .+|+....+.-|..+ ..+.|-.+. -+++++.|+.|+|+-+....++.++.+|.++|.+|.|+|.|.+|+++
T Consensus       299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~  377 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC  377 (524)
T ss_pred             cEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence            467999 899999999999998 889998654 57889999999999999889999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---------CCEEEEEeCCCeEEEEEcCCceeeEec---cCCcee
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---------GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKT  146 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~  146 (359)
                      |.|++++||.+........+++|...|..+.|+|+         +..+++++.|++|++||+..+.+++.|   ..+|.+
T Consensus       378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS  457 (524)
T ss_pred             cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence            99999999999999999999999999999999984         457999999999999999999999999   458999


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++|||+|  +++++.||.|.+|+..++ ..+..+.+..     .|..++|+.+|+.|.++-.||.+.++.
T Consensus       458 vafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~~~~-----~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  458 VAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQGTG-----GIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             EEecCCCcEEEecCCCCeeEeccccch-heeEeecCCC-----eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            9999999  677788999999998776 5666666543     599999999999999999998776654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2e-27  Score=190.42  Aligned_cols=211  Identities=14%  Similarity=0.221  Sum_probs=176.4

Q ss_pred             CeEEEe--CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEE
Q 041916            1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGVV   75 (359)
Q Consensus         1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l   75 (359)
                      +++|||  ....+++.++.|..- .++.|++ ++..++++|.|++|++|+...++.+.++.+|...|...+|+|. .+++
T Consensus        84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf  163 (311)
T KOG0277|consen   84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF  163 (311)
T ss_pred             eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence            478999  455689999999885 9999998 4677888899999999999999999999999999999999994 6899


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEeccC---CceeEEEc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTLPG---HAKTLDFS  150 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s  150 (359)
                      +++|.||++++||++..-....+..|...|.+..|+. +.+.++||+.|+.|+.||+|+. .++..+.+   .|..+.||
T Consensus       164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            9999999999999987655555899999999999998 6677999999999999999985 46777744   48999999


Q ss_pred             CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEEcCCCeEEEEEc
Q 041916          151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~~~i~~~  215 (359)
                      |..   +++++.|=+++|||.......+..+.-|+.    -+..+.|++. +.+++.++-|+.+.+|.+
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE----Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE----FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cchhhHhhhccccceEEecccccchhhhhhhhccce----EEeccccccccCceeeecccccceeeecc
Confidence            987   778889999999998877677777777754    7889999885 345666555555554443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=4.5e-26  Score=226.29  Aligned_cols=211  Identities=18%  Similarity=0.233  Sum_probs=172.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN-PFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~   76 (359)
                      +|+||| .++..+..+.+|.+. ++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..+.++.|+ +++.+|+
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA  634 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence            489999 888899999999886 9999997 7899999999999999999999988888765 679999995 5789999


Q ss_pred             EEeCCCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eeeEecc---CCcee
Q 041916           77 LGHSGGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY------EVLQTLP---GHAKT  146 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~---~~i~~  146 (359)
                      +|+.||.|++||+++.. ++..+.+|...|+++.|. ++.+|++++.|++|++||++.+      .++..+.   ..+.+
T Consensus       635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            99999999999998765 567788999999999997 7889999999999999999853      4566663   45788


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceee--------ccc-CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM--------GHS-MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~-~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++|+|++  +++++.|+.|.+|+.... .+...+.        +.. ..+...|.+++|+|++..|++|+.+|.+.+|.
T Consensus       714 v~~s~~~~~lasgs~D~~v~iw~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        714 VGLSVSDGYIATGSETNEVFVYHKAFP-MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEECCCC-CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            9999998  777888999999996543 1111110        000 00234699999999999998888887766653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=9.7e-27  Score=196.08  Aligned_cols=209  Identities=18%  Similarity=0.285  Sum_probs=171.8

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEe-cC--CCEEEEEecCCeEEEEECCCCeE----EEEEecCCCCeEEEEEcCCC
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFL-RN--HFLLASINKFGQLRYQDVTMGEI----VGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s-~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~   72 (359)
                      .++|||..|++.+++.+|.++ .+++|. ++  ...|++++.|.++++|-...+..    +....+|..+|.++...++|
T Consensus       126 ~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg  205 (423)
T KOG0313|consen  126 TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG  205 (423)
T ss_pred             eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC
Confidence            368999999999999999998 766664 33  34699999999999999987753    33445999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCC-------------------------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916           73 GVVSLGHSGGTVTMWKPT-------------------------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIK  127 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~-------------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~  127 (359)
                      ..+++|+.|.+|.+|+..                         ++.|+.++.+|..+|.++.|++ ...+++++.|.+|+
T Consensus       206 tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk  284 (423)
T KOG0313|consen  206 TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIK  284 (423)
T ss_pred             CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEE
Confidence            999999999999999921                         2346778899999999999988 67899999999999


Q ss_pred             EEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCCCE-
Q 041916          128 IWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDV-  200 (359)
Q Consensus       128 iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~-  200 (359)
                      .||+.++..+.++  +..+.+++.+|..  +++++.|..|++||++++.  .....+.+|..    .|.++.|+|...+ 
T Consensus       285 ~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n----wVssvkwsp~~~~~  360 (423)
T KOG0313|consen  285 VWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN----WVSSVKWSPTNEFQ  360 (423)
T ss_pred             EEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh----hhhheecCCCCceE
Confidence            9999999988877  5578999999987  6677789999999988753  34467788866    9999999998764 


Q ss_pred             EEEEcCCCeEEEEE
Q 041916          201 LGIGHSMGWSSILV  214 (359)
Q Consensus       201 l~~~~~dg~~~i~~  214 (359)
                      |++|+.|+.+.+|.
T Consensus       361 ~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  361 LVSGSYDNTVKLWD  374 (423)
T ss_pred             EEEEecCCeEEEEE
Confidence            44444555444443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=3.6e-27  Score=203.03  Aligned_cols=202  Identities=18%  Similarity=0.250  Sum_probs=165.6

Q ss_pred             EeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe-------EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           14 CLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE-------IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      .|.+|..- ++|+|++. .-+|++++.|+.|++||+....       +...+.+|...|..++|+|-. .+|++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            78899995 99999996 4678999999999999997532       456788999999999999954 68899999999


Q ss_pred             EEEEeCC--CCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEecc---CCceeEEEcCCc---
Q 041916           84 VTMWKPT--TAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTLP---GHAKTLDFSQKG---  153 (359)
Q Consensus        84 v~lwd~~--~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~---~~i~~~~~s~~g---  153 (359)
                      +.|||++  +.++.....+|.+.|+|++|+| ++..|||||.|++|.+||+|+. .+++++.   ..|.++.|||+.   
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence            9999999  5566777889999999999999 6677999999999999999985 4677774   468999999987   


Q ss_pred             eEEEEcCCcEEEEcCCCCC----------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccc
Q 041916          154 LLAVGTGSFVQILGDFSGS----------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFD  223 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~  223 (359)
                      ++++|.|+.+.+||+..-+          .+...+..|.+ |...|..+.|+|+..+++           .+.+.|+.+.
T Consensus       332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG-H~~kV~DfsWnp~ePW~I-----------~SvaeDN~Lq  399 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG-HTAKVSDFSWNPNEPWTI-----------ASVAEDNILQ  399 (422)
T ss_pred             eEecccCCcEEEEeccccccccChhhhccCCcceeEEecC-cccccccccCCCCCCeEE-----------EEecCCceEE
Confidence            6667789999999975422          23455667776 777999999999998653           3455566666


Q ss_pred             cccC
Q 041916          224 SWVA  227 (359)
Q Consensus       224 ~~~~  227 (359)
                      +|.+
T Consensus       400 IW~~  403 (422)
T KOG0264|consen  400 IWQM  403 (422)
T ss_pred             Eeec
Confidence            6765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=5e-28  Score=200.20  Aligned_cols=223  Identities=16%  Similarity=0.188  Sum_probs=186.7

Q ss_pred             CeEEEe-CCCcEEEEec--------cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc
Q 041916            1 YPYIYN-RDGTELHCLK--------EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVN   69 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~--------~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s   69 (359)
                      +|.+|| .+|+....++        -+..+ .|++||.|...||+|+.||.|++|.+.+|.|++.|. .|...|+|+.||
T Consensus       236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS  315 (508)
T KOG0275|consen  236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS  315 (508)
T ss_pred             eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence            367999 8887654443        34555 999999999999999999999999999999999997 899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCc
Q 041916           70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHA  144 (359)
Q Consensus        70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i  144 (359)
                      .|+..+++++.|.++++--+.+|+++..+.+|.+.|+...|.+||+++++++.||+|++|+..+..|+.+|.     .+|
T Consensus       316 rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~v  395 (508)
T KOG0275|consen  316 RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPV  395 (508)
T ss_pred             cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999982     367


Q ss_pred             eeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc--CCCC
Q 041916          145 KTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP--GSGE  219 (359)
Q Consensus       145 ~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~--~~~d  219 (359)
                      .++-.-|..   +++|...++|+|.++. + +.+..+..-. ..++...+++.+|.|.++.+.+.|+...-|..  |.-+
T Consensus       396 nsv~~~PKnpeh~iVCNrsntv~imn~q-G-QvVrsfsSGk-REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  396 NSVILLPKNPEHFIVCNRSNTVYIMNMQ-G-QVVRSFSSGK-REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE  472 (508)
T ss_pred             eeEEEcCCCCceEEEEcCCCeEEEEecc-c-eEEeeeccCC-ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence            888887766   8888888999999853 3 4444443322 24557788899999999999999997665543  3334


Q ss_pred             Ccccccc
Q 041916          220 PNFDSWV  226 (359)
Q Consensus       220 ~~~~~~~  226 (359)
                      ..+.+-+
T Consensus       473 ~tl~VhE  479 (508)
T KOG0275|consen  473 RTLPVHE  479 (508)
T ss_pred             eeeeccc
Confidence            4444433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.6e-26  Score=206.11  Aligned_cols=208  Identities=17%  Similarity=0.229  Sum_probs=172.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-----------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-----------------------   55 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------   55 (359)
                      .||+|+ .+|........+.. ++++.|+++|.+||+|..+|.|.|||..+.+.+..                       
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs  277 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS  277 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec
Confidence            489999 77775554444344 59999999999999999999999999753221111                       


Q ss_pred             -------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCC
Q 041916           56 -------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGH  115 (359)
Q Consensus        56 -------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~  115 (359)
                                         +.+|...|..+.|++|+.++|+|+.|+.+.|||.....+...+..|...|.+++|+| ...
T Consensus       278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~  357 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG  357 (484)
T ss_pred             CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence                               346888899999999999999999999999999988899999999999999999999 677


Q ss_pred             EEEEEe--CCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCc
Q 041916          116 LMATSG--KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGY  187 (359)
Q Consensus       116 ~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  187 (359)
                      +||+|+  .|+.|++||..++..+...  .+.|.+|.|++..  ++++-  .++.|.||+..+. ..+..+.+|..    
T Consensus       358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~----  432 (484)
T KOG0305|consen  358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTS----  432 (484)
T ss_pred             ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcc----
Confidence            888875  6999999999999999888  5689999999998  55543  4689999997664 67788888876    


Q ss_pred             ceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          188 QIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       188 ~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .|..++++|||..+++|+.|.++++|
T Consensus       433 RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  433 RVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             eeEEEEECCCCCEEEEecccCcEEec
Confidence            89999999999888775555544443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=4.2e-27  Score=213.20  Aligned_cols=208  Identities=16%  Similarity=0.239  Sum_probs=177.2

Q ss_pred             CeEEEe-CCC----cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeE-----EE----EEecCCCCeE
Q 041916            1 YPYIYN-RDG----TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEI-----VG----NFRTGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~-----~~----~~~~~~~~v~   64 (359)
                      +|++|. .++    .++....+|... .+++++..+ .+|+++|.|++|++|++...+.     +.    ....|...|+
T Consensus       388 svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN  467 (775)
T KOG0319|consen  388 SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN  467 (775)
T ss_pred             eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence            478884 222    245667789887 999997755 7899999999999999976221     11    2346999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC--
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG--  142 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--  142 (359)
                      |++.+|+..+||+||.|.+.+||++.+...+.++.+|...|.|+.|+|..+.++|+|.|++|+||.+.++.++.+|.|  
T Consensus       468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~  547 (775)
T KOG0319|consen  468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT  547 (775)
T ss_pred             ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999965  


Q ss_pred             -CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          143 -HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       143 -~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                       .|..+.|-.+|  +++++.||-|++|++.++ .+...+..|..    .|++++.+|.+.++++|+.||.+.+|
T Consensus       548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~D----rvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHND----RVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             ceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccc----eeEEEeecCccceeEecCCCeEEEEe
Confidence             47788898888  999999999999998777 78899999976    99999999999777666666544443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.6e-27  Score=214.26  Aligned_cols=216  Identities=16%  Similarity=0.239  Sum_probs=171.8

Q ss_pred             EEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--------------------------------C--------
Q 041916           13 HCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--------------------------------G--------   50 (359)
Q Consensus        13 ~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~--------   50 (359)
                      ..+. .|.+. +++.||+||+|||+||.|+.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3455 78887 9999999999999999999999998754                                0        


Q ss_pred             --------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916           51 --------------------EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAF  110 (359)
Q Consensus        51 --------------------~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~  110 (359)
                                          +++..|.+|.+.|..+.||.+ ++|++++.|.+|+||++....++..| .|.+.|+||+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaF  417 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAF  417 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEe
Confidence                                122236789999999999975 58999999999999999999999888 49999999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeec--ccC
Q 041916          111 HP-NGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMG--HSM  183 (359)
Q Consensus       111 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~  183 (359)
                      +| |.+||++|+-||.|+||++...+.+.-.  ..-|++++|+|+|  .++|+.+|.+++|+.... +.......  +..
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~  496 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNK  496 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccC
Confidence            99 8899999999999999999987766544  6679999999999  778889999999995443 33222211  100


Q ss_pred             --CCCcceEEEEEeeCCC-EEEEEcCCCeEEE--------------------------------EEcCCCCCccccccCC
Q 041916          184 --VKGYQIGKVSFRPYED-VLGIGHSMGWSSI--------------------------------LVPGSGEPNFDSWVAN  228 (359)
Q Consensus       184 --~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i--------------------------------~~~~~~d~~~~~~~~~  228 (359)
                        ..+..|+++.|.|... .|++.+.|..++|                                +++++.|..|.+|+..
T Consensus       497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence              0122799999997544 4666677765554                                6778899999999975


Q ss_pred             Ccc
Q 041916          229 PFE  231 (359)
Q Consensus       229 ~~~  231 (359)
                      .+.
T Consensus       577 ~~~  579 (712)
T KOG0283|consen  577 SFN  579 (712)
T ss_pred             CCc
Confidence            544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.3e-27  Score=187.55  Aligned_cols=200  Identities=19%  Similarity=0.323  Sum_probs=166.5

Q ss_pred             EEEeccCCCeEEEEEecCC-CEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 041916           12 LHCLKEHGAVLKLQFLRNH-FLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        12 ~~~l~~h~~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd   88 (359)
                      ...+.-..+...++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++- +..++++|.||+|++|+
T Consensus        54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~  133 (311)
T KOG0277|consen   54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD  133 (311)
T ss_pred             EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence            3444455556999999975 6788899999999999643 3578889999999999999985 46788889999999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEcC
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGTG  160 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~d  160 (359)
                      ++-++.+.++.+|..-|...+|+| .+++++++|.|+++++||++.. +.+. +   ...+.++.|+.-.   +++++.|
T Consensus       134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCC
Confidence            999999999999999999999999 7889999999999999999873 4333 4   3478999999865   7788899


Q ss_pred             CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      +.|++||+++-..++..+.+|..    .|..+.|+|...           .++.+++.|.++++|+.
T Consensus       213 ~~vr~wDir~~r~pl~eL~gh~~----AVRkvk~Sph~~-----------~lLaSasYDmT~riw~~  264 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPLFELNGHGL----AVRKVKFSPHHA-----------SLLASASYDMTVRIWDP  264 (311)
T ss_pred             ceEEEEehhhccccceeecCCce----EEEEEecCcchh-----------hHhhhccccceEEeccc
Confidence            99999999988778888888876    999999999764           44555666666666664

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.6e-26  Score=190.19  Aligned_cols=204  Identities=14%  Similarity=0.264  Sum_probs=170.2

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------------C------eEEEEEecCCCCeEEEEEcCCC
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------------G------EIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      -..+..|..+ .+.+|+|||.++|+|+.|.+|+|+|+..            |      -.++++..|..+|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            4567789998 9999999999999999999999999861            1      2567788899999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCc
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHA  144 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i  144 (359)
                      .+|++|+.|++|++||+........+.  ....+|++|+|+|.|.+|++|..-.++++||+.+.++...-      .+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            999999999999999987543322222  23457999999999999999999999999999998875544      4679


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +++.+|+.|  +++++.||.|++||-.++ .++..+ ..|   .++.|.+..|..+|+|+++.+.|..+.+|-.+++.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH---~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAH---GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhc---CCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            999999999  778899999999997666 455544 455   46789999999999999998888888887655543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=213.78  Aligned_cols=210  Identities=14%  Similarity=0.182  Sum_probs=182.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|++|| +-|.++..|..|.++ +.++|+|++.+++|||.|-.|++|+..+.+++.++.+|...|..+.|++.-..|+|+
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA  111 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA  111 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc
Confidence            378999 899999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------------------
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-----------------------  135 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------------  135 (359)
                      |+|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+|++||+...+                       
T Consensus       112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf  191 (1202)
T KOG0292|consen  112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF  191 (1202)
T ss_pred             cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence            999999999999999999999999999999999999999999999999999985311                       


Q ss_pred             ----e-e-EeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          136 ----V-L-QTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       136 ----~-~-~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                          . + +.+.|   .|+-++|+|.-  +++++.|..|++|.+.... =.+.+..+|..    +|.++-|+|..+.+++
T Consensus       192 g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n----nVssvlfhp~q~lIlS  267 (1202)
T KOG0292|consen  192 GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN----NVSSVLFHPHQDLILS  267 (1202)
T ss_pred             CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC----CcceEEecCccceeEe
Confidence                0 0 11123   46788999987  7778888999999864431 12345667765    8999999999988888


Q ss_pred             EcCCCeEEEEE
Q 041916          204 GHSMGWSSILV  214 (359)
Q Consensus       204 ~~~dg~~~i~~  214 (359)
                      .+.|+.+++|.
T Consensus       268 nsEDksirVwD  278 (1202)
T KOG0292|consen  268 NSEDKSIRVWD  278 (1202)
T ss_pred             cCCCccEEEEe
Confidence            88888777653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.2e-26  Score=187.06  Aligned_cols=196  Identities=18%  Similarity=0.312  Sum_probs=149.6

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEe
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--VVSLGHSGGTVTMWK   88 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~sg~~dg~v~lwd   88 (359)
                      +..+..|.+. ++++.+  +.++|+||.|-+|+|||+.....+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            4556788887 999884  78999999999999999999999999999999999999998764  899999999999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCC-----------------------
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGH-----------------------  143 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~-----------------------  143 (359)
                      ......+.++.+|.+.|+.++++|.|++.++.+.|+.+++||+-.|+.-..+  ...                       
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i  193 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDI  193 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEE
Confidence            9999999999999999999999999999999999999999999776532222  222                       


Q ss_pred             -----------------ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE--eeCCCEEEE
Q 041916          144 -----------------AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF--RPYEDVLGI  203 (359)
Q Consensus       144 -----------------i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~  203 (359)
                                       +.++.|...+ +++++.++.|.+||... ..+...+.+|..    .|-++.+  .|++.+|++
T Consensus       194 ~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~----RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  194 YQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHEN----RVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-Cccceeeecchh----heeeeEEEecCCceEEEE
Confidence                             2333344444 55555566666666433 355556666654    6666653  244555555


Q ss_pred             EcCCCeEEEEE
Q 041916          204 GHSMGWSSILV  214 (359)
Q Consensus       204 ~~~dg~~~i~~  214 (359)
                      +++||.+.+|.
T Consensus       269 aSSDG~I~vWd  279 (362)
T KOG0294|consen  269 ASSDGFIKVWD  279 (362)
T ss_pred             eccCceEEEEE
Confidence            55555444443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=4.3e-26  Score=206.72  Aligned_cols=214  Identities=18%  Similarity=0.221  Sum_probs=178.7

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CE
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFN-GV   74 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~   74 (359)
                      .+++|+..+..-..+.+|.+. .+++...+|-+|+||+.|.++++|.+..+    -++....+|...|.+++++..+ .+
T Consensus       347 ~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf  426 (775)
T KOG0319|consen  347 ELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF  426 (775)
T ss_pred             ceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence            367888444444589999998 99997677889999999999999987443    2566778999999999997765 68


Q ss_pred             EEEEeCCCeEEEEeCCCCc----c-eE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---
Q 041916           75 VSLGHSGGTVTMWKPTTAA----P-LI----KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---  142 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~----~-~~----~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---  142 (359)
                      |+++|.|+++++|++...+    + ..    +..+|...|++++++|+..++||||.|.+.++|++.....+.++.+   
T Consensus       427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            9999999999999987521    1 11    2347999999999999999999999999999999998888888855   


Q ss_pred             CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          143 HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       143 ~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      .+.++.|+|..  +++++.|.+|+||.+.+. .++.++.+|..    .|..+.|-.++..|++++.||.+++|..-..+
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~----aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTS----AVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccc----eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            58999999987  788889999999998776 78999999977    89999999999988888888777766654443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-25  Score=179.05  Aligned_cols=208  Identities=15%  Similarity=0.205  Sum_probs=174.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +.||- .+|+.+-++.+|.+. +|+..+-+..+|++|+.|.++++||+.+|+++..++.. .+|..+.|+++|++++...
T Consensus        34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~t  112 (327)
T KOG0643|consen   34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILAST  112 (327)
T ss_pred             ceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEe
Confidence            45787 799999999999998 99999999999999999999999999999999999854 7899999999999887764


Q ss_pred             -----CCCeEEEEeCC-------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCC
Q 041916           80 -----SGGTVTMWKPT-------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGH  143 (359)
Q Consensus        80 -----~dg~v~lwd~~-------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~  143 (359)
                           ..+.|.++|++       ...|...+..+.+.++.+.|.|-+.+|++|..||.|..||++++..+..-    ...
T Consensus       113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~  192 (327)
T KOG0643|consen  113 DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK  192 (327)
T ss_pred             hhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc
Confidence                 34679999988       45678888889999999999999999999999999999999998554332    568


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC------------------------------------------------
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSH------------------------------------------------  173 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~------------------------------------------------  173 (359)
                      |+.|+++|+.  +++++.|.+-++||..+-..                                                
T Consensus       193 Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy  272 (327)
T KOG0643|consen  193 INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY  272 (327)
T ss_pred             cccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence            9999999999  88899999999999654210                                                


Q ss_pred             ------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          174 ------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       174 ------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                            .+..+.+|    -++|++++|+|+|+..++|+.||.+++..
T Consensus       273 h~i~eEEigrvkGH----FGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  273 HLIFEEEIGRVKGH----FGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             HHHHHHHhcccccc----ccCcceeEECCCCcccccCCCCceEEEEE
Confidence                  01112234    34899999999999888888888877764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.3e-25  Score=181.10  Aligned_cols=216  Identities=16%  Similarity=0.262  Sum_probs=177.6

Q ss_pred             EEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeC
Q 041916           13 HCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS--GGTVTMWKP   89 (359)
Q Consensus        13 ~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~--dg~v~lwd~   89 (359)
                      +.++...+ ++++.|+++|.+|++++.|.+|++||..+|+.+.++..+.-.|..++|......++.++.  |.+|+..++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            44555344 499999999999999999999999999999999999999888999999776666666665  889999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCceeEEEcCCc-eEEEEcCC-cEEEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKTLDFSQKG-LLAVGTGS-FVQIL  166 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~g-l~~~~~d~-~i~i~  166 (359)
                      .+.+.++.|.+|...|++|+.+|-+..+++++.|++|++||+|..++...+. ..-..++|+|.| +++++.++ .|++|
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLy  167 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLY  167 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEE
Confidence            9999999999999999999999988999999999999999999888776663 345678999999 66666554 99999


Q ss_pred             cCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE---------------------------------
Q 041916          167 GDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI---------------------------------  212 (359)
Q Consensus       167 d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i---------------------------------  212 (359)
                      |++.- ..+...+.-... .....+.+.|+|+|++|+.++..+.+.+                                 
T Consensus       168 D~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  168 DLRSFDKGPFTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             EecccCCCCceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence            98764 233333332211 3447899999999999999888874433                                 


Q ss_pred             EEcCCCCCccccccCCC
Q 041916          213 LVPGSGEPNFDSWVANP  229 (359)
Q Consensus       213 ~~~~~~d~~~~~~~~~~  229 (359)
                      +++|++|+.+.+|++..
T Consensus       247 vl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EEEecCCCcEEEEEcCC
Confidence            67788899999999853

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.1e-26  Score=211.26  Aligned_cols=210  Identities=16%  Similarity=0.247  Sum_probs=184.3

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      .+.+++|+|....++++-.+|.|++||.+-+.++..|..|.++|..++|+|.+.+++||++|..|++|+..+.+++.++.
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~   90 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL   90 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--
Q 041916          100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGS--  172 (359)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~--  172 (359)
                      +|-+.|+.+.|++.-.+|+++|.|.+|+||+..+.+++..+.|   .|.|..|+|..  +++++-|-+|+|||+..-.  
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk  170 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK  170 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence            9999999999999999999999999999999999999999965   48999999966  8889999999999963210  


Q ss_pred             -C-------------------------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------
Q 041916          173 -H-------------------------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI--------------  212 (359)
Q Consensus       173 -~-------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i--------------  212 (359)
                       .                         ....+.+|    +..|+-++|+|.-.++++|++|..+++              
T Consensus       171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc  246 (1202)
T KOG0292|consen  171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC  246 (1202)
T ss_pred             CCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence             0                         01123344    347999999999999999999996655              


Q ss_pred             ------------------EEcCCCCCccccccCCCccCh
Q 041916          213 ------------------LVPGSGEPNFDSWVANPFETS  233 (359)
Q Consensus       213 ------------------~~~~~~d~~~~~~~~~~~~~~  233 (359)
                                        +.+.+.|++|++|+++.-...
T Consensus       247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             hcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence                              577889999999998754433

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=8.8e-25  Score=203.68  Aligned_cols=192  Identities=17%  Similarity=0.231  Sum_probs=153.0

Q ss_pred             EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc--------ceEEEeccCCCeE
Q 041916           36 INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAA--------PLIKMLCHQGPVS  106 (359)
Q Consensus        36 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~  106 (359)
                      |+.++.|++|++.....+..+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            566889999999887888899999999999999997 7899999999999999997642        3456789999999


Q ss_pred             EEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916          107 ALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH  181 (359)
Q Consensus       107 ~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~  181 (359)
                      +++|+|++.. |++++.|++|++||++++..+..+  ...|.+++|+|+|  +++++.|+.|+|||++++ ..+..+.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecc
Confidence            9999998876 578999999999999998876665  5579999999999  555667999999998776 566677777


Q ss_pred             cCCC-CcceEEEEEeeCCCEEEEEcCCC----eEE---------------------------------EEEcCCCCCccc
Q 041916          182 SMVK-GYQIGKVSFRPYEDVLGIGHSMG----WSS---------------------------------ILVPGSGEPNFD  223 (359)
Q Consensus       182 ~~~~-~~~v~~~~~~p~~~~l~~~~~dg----~~~---------------------------------i~~~~~~d~~~~  223 (359)
                      .... ...+....|++++.+|++++.++    .+.                                 ++++|++|++++
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            5400 01123334568888888876553    222                                 256778999999


Q ss_pred             cccCC
Q 041916          224 SWVAN  228 (359)
Q Consensus       224 ~~~~~  228 (359)
                      +|++.
T Consensus       289 ~~e~~  293 (568)
T PTZ00420        289 YYQHS  293 (568)
T ss_pred             EEEcc
Confidence            99984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=196.01  Aligned_cols=209  Identities=16%  Similarity=0.216  Sum_probs=161.6

Q ss_pred             eEEEeCCCcEEEEe-------------ccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeE-EEEEe-----cCC
Q 041916            2 PYIYNRDGTELHCL-------------KEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEI-VGNFR-----TGL   60 (359)
Q Consensus         2 v~iwd~~g~~~~~l-------------~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~   60 (359)
                      .+|+|++|.++..+             ++|... +|.+|+|+. ..++|++.||+++|||+...+. +..+.     +..
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            46788888765433             467776 999999974 6789999999999999986542 23333     233


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceE-EEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA--PLI-KMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKY-  134 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~--~~~-~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-  134 (359)
                      -+++.++|+|+|..||+|+.||.|.+|+.....  +.. .-.+|..  .|+||+||+||++|++-|.|+++++||+|.. 
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            478999999999999999999999999975432  222 2347887  8999999999999999999999999999985 


Q ss_pred             eeeEecc-----CCceeEEEcCCc--eEEEEc------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          135 EVLQTLP-----GHAKTLDFSQKG--LLAVGT------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       135 ~~~~~~~-----~~i~~~~~s~~g--l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      +++....     -+-+.++|||+.  ++++.+      .|.+.+||..+- ..++.+.-.    +..|..+.|+|--+.+
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~----~aSvv~~~WhpkLNQi  472 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDIS----TASVVRCLWHPKLNQI  472 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce-eeEEEecCC----CceEEEEeecchhhhe
Confidence            4666552     245889999999  455432      378999996554 333333322    3489999999999999


Q ss_pred             EEEcCCCeEEEEEc
Q 041916          202 GIGHSMGWSSILVP  215 (359)
Q Consensus       202 ~~~~~dg~~~i~~~  215 (359)
                      .+|+.||.+++++.
T Consensus       473 ~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  473 FAGSGDGTAHVYYD  486 (641)
T ss_pred             eeecCCCceEEEEC
Confidence            99999999888874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.6e-25  Score=193.07  Aligned_cols=205  Identities=20%  Similarity=0.324  Sum_probs=169.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~   76 (359)
                      .|+||| .+...+..+.+|..+ ..+.|+|++ ..|++|++|+.+++||+.+......+.+|.+.|.|.+|+|.+ .+++
T Consensus        91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence            377888 555567888999998 999999964 678889999999999999988777899999999999999965 5899


Q ss_pred             EEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcC
Q 041916           77 LGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQ  151 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~  151 (359)
                      +||.||.|++||+++. ..+.++ .|..+|.++.+-|.|..|++++. ..|++||+.+|. .+..+   ...|+|+.+..
T Consensus       171 tGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS  248 (487)
T ss_pred             ecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence            9999999999999987 445554 58889999999999999999986 589999999654 33333   44689999999


Q ss_pred             Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++  ++++|-|+.+++||+ +..+.+..+. ..    ++|.+++.+|+++.+++|..+|.+.+-
T Consensus       249 ~~~rLlS~sLD~~VKVfd~-t~~Kvv~s~~-~~----~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDT-TNYKVVHSWK-YP----GPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             CCceEeecccccceEEEEc-cceEEEEeee-cc----cceeeEEecCCCceEEEecccceeeee
Confidence            88  999999999999994 3323333332 22    389999999999999999999966554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.5e-24  Score=174.80  Aligned_cols=221  Identities=19%  Similarity=0.262  Sum_probs=180.5

Q ss_pred             CeEEEe-CCCcEEEEeccCC-CeEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHG-AVLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~-~~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|+||| .+|..++++..+. ++..++|......++.++.  |.+|++.++.+.+.++.|.+|...|+.++.+|-+..++
T Consensus        37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~Fl  116 (311)
T KOG1446|consen   37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFL  116 (311)
T ss_pred             eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEE
Confidence            478999 9999999988764 4577888776666666665  88999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec------cCCceeEE
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL------PGHAKTLD  148 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~------~~~i~~~~  148 (359)
                      +++.|++|++||++..++...+.....  ..++|+|.|-++|++.....|++||+|+.  .|..++      ....+.|.
T Consensus       117 S~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~  194 (311)
T KOG1446|consen  117 SSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE  194 (311)
T ss_pred             ecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE
Confidence            999999999999998888777654333  34899999999999998889999999985  355555      23568999


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccccc
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWV  226 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~  226 (359)
                      |||+|  ++.+...+.+++.|.-+| .....+..+.. .+.--.+.+|+||++++++|+.||.+.+|...++ ..+-.|.
T Consensus       195 FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~-~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~  271 (311)
T KOG1446|consen  195 FSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPN-AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLR  271 (311)
T ss_pred             EcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccC-CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEec
Confidence            99999  777777899999997666 57777777754 2222367899999999999999999999987443 3344444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4.2e-25  Score=205.12  Aligned_cols=209  Identities=19%  Similarity=0.272  Sum_probs=176.7

Q ss_pred             CeEEEe-CCCcEEEE-eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHC-LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~-l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +|.+|| .++..+.+ +.+|.+. .+++|..-+.+|++|+.|.++++||+.+|.+...+.+|.+.|.++...+  ..+++
T Consensus       229 tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~s  306 (537)
T KOG0274|consen  229 TLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVS  306 (537)
T ss_pred             eeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEee
Confidence            467999 88888887 9999997 9999987778999999999999999999999999999999999988654  57888


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC-Cc
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ-KG  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~-~g  153 (359)
                      |+.|.+|++|++.++..+..+.+|.++|+++..+  +.++++|+.|++|++||++++++++.+.+   .|.++.+.+ .-
T Consensus       307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~  384 (537)
T KOG0274|consen  307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENR  384 (537)
T ss_pred             ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcce
Confidence            9999999999999999999999999999999997  78999999999999999999999999954   588998888 55


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCcc
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFE  231 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~  231 (359)
                      +++++.|++|++||+.+...++..+..|..    .+.++.+  .+.+|++++.            |+.+++|+....+
T Consensus       385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~----~v~~l~~--~~~~Lvs~~a------------D~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTS----LVSSLLL--RDNFLVSSSA------------DGTIKLWDAEEGE  444 (537)
T ss_pred             EEeeeeccceEeecCCchhhhhhhhcCCcc----ccccccc--ccceeEeccc------------cccEEEeecccCc
Confidence            999999999999998766467778888754    5544443  3555555444            4556666555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=2.7e-26  Score=191.47  Aligned_cols=204  Identities=15%  Similarity=0.283  Sum_probs=171.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      ||+||| .+|+++.++-+|.+. ..+.|+.  .+++|++.|.+|.+||+....   +.+.+.+|...|+.+.|+.  ++|
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyI  333 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYI  333 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceE
Confidence            689999 999999999999987 9999974  589999999999999998654   3455779999999999964  599


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC---ceeEEEcCC
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH---AKTLDFSQK  152 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---i~~~~~s~~  152 (359)
                      +++|.|.+|++|++.++..+.++.+|...|-|+.+  .|+++++|+.|.+|++||+..|.+++.+.|+   |.++.|...
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k  411 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK  411 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence            99999999999999999999999999999988876  6889999999999999999999999999664   899999988


Q ss_pred             ceEEEEcCCcEEEEcCCCCCCc--------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916          153 GLLAVGTGSFVQILGDFSGSHN--------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS  224 (359)
Q Consensus       153 gl~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~  224 (359)
                      .+++++.||+|++||+..+..+        +..+..|.+    .|..+.|...  .            +++.+.|.+|-+
T Consensus       412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg----RVFrLQFD~f--q------------IvsssHddtILi  473 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG----RVFRLQFDEF--Q------------IISSSHDDTILI  473 (499)
T ss_pred             eeeeccccceEEEEecccccCCcccccchHHHhhhhccc----eeEEEeecce--E------------EEeccCCCeEEE
Confidence            8999999999999998776433        233444544    8999998753  2            344555666677


Q ss_pred             ccCC
Q 041916          225 WVAN  228 (359)
Q Consensus       225 ~~~~  228 (359)
                      |+..
T Consensus       474 WdFl  477 (499)
T KOG0281|consen  474 WDFL  477 (499)
T ss_pred             EEcC
Confidence            7764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=7.4e-25  Score=187.66  Aligned_cols=209  Identities=21%  Similarity=0.281  Sum_probs=171.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--LGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~   76 (359)
                      .|+||. ....+...+..|.++ +.+..+|.|.||+++++||+..+.|+++|..+......  .-.+++.+|+|||.+|.
T Consensus       284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg  363 (506)
T KOG0289|consen  284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG  363 (506)
T ss_pred             eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe
Confidence            378999 666677788889987 99999999999999999999999999999988776643  33589999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQK  152 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~  152 (359)
                      +|..||.|++||+.++..+..|.+|.++|.+|+|+.+|-||++++.|+.|++||+|..+...++    ...+.+++|.+.
T Consensus       364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence            9999999999999999999999999999999999999999999999999999999998877776    235899999999


Q ss_pred             c--eEEEEcCCcEEEEcCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          153 G--LLAVGTGSFVQILGDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 g--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      |  +.++|.+=+|++++-.+. -..+..+..|.+    ..+.+.|....+++++++.|...+++
T Consensus       444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             CCeEEeecceeEEEEEecccccceeeehhhhccc----ccceeeecccceEEeeccchhheEEe
Confidence            9  444444445555542111 123333444433    78899999999999888888754443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=1.5e-26  Score=185.01  Aligned_cols=218  Identities=16%  Similarity=0.216  Sum_probs=190.1

Q ss_pred             CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916            7 RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVT   85 (359)
Q Consensus         7 ~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~   85 (359)
                      .+|.=+-+|.+|.+. ++...+.+...-|+++.|-+-++||.-+|..+++|. |..-|..++|+.|.++|++|+.+..++
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllr  125 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR  125 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence            456668899999997 888888888888999999999999999999999987 778899999999999999999999999


Q ss_pred             EEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCC
Q 041916           86 MWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGS  161 (359)
Q Consensus        86 lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~  161 (359)
                      |||++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++..++++  +.+|+++.++++| +++.+..+
T Consensus       126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs  205 (334)
T KOG0278|consen  126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS  205 (334)
T ss_pred             hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc
Confidence            99998764 56778899999999999998899999999999999999999999888  7899999999999 99999999


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE------------------------------
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS------------------------------  211 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~------------------------------  211 (359)
                      .|.+||..+- ..+..+....     .|.+...+|+..++++|+.|+.+.                              
T Consensus       206 sV~Fwdaksf-~~lKs~k~P~-----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG  279 (334)
T KOG0278|consen  206 SVKFWDAKSF-GLLKSYKMPC-----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG  279 (334)
T ss_pred             eeEEeccccc-cceeeccCcc-----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence            9999996554 4444444332     699999999999999998887332                              


Q ss_pred             -EEEcCCCCCccccccCCCcc
Q 041916          212 -ILVPGSGEPNFDSWVANPFE  231 (359)
Q Consensus       212 -i~~~~~~d~~~~~~~~~~~~  231 (359)
                       ++.+|+.||++++|..++-.
T Consensus       280 E~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  280 ELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ceeeccCCCceEEEEEecCCC
Confidence             36889999999999987643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=4e-25  Score=208.61  Aligned_cols=209  Identities=18%  Similarity=0.229  Sum_probs=173.3

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEcCC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------------------GEIVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~   71 (359)
                      .+.+...|.+. +|+.|+|||.+||+|++|+.|.||....                  .+++..+.+|.+.|..++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            35677889887 9999999999999999999999999872                  1367788999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---------C
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---------G  142 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~  142 (359)
                      +.+|++++.|++|.+|+..+...+..+.+|.+.|-.++|+|-|+|||+-+.|++|++|++.++...+.+.         .
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999988877766662         2


Q ss_pred             CceeEEEcCCc-eEEEE-----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-------------CC----
Q 041916          143 HAKTLDFSQKG-LLAVG-----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-------------ED----  199 (359)
Q Consensus       143 ~i~~~~~s~~g-l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------~~----  199 (359)
                      ....+.||||| ++++.     ....+.|.+ +..-..-..+.+|..    ++.+++|+|.             ..    
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~Iie-R~tWk~~~~LvGH~~----p~evvrFnP~lfe~~~~ng~~~~~~~~y~  295 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIE-RGTWKVDKDLVGHSA----PVEVVRFNPKLFERNNKNGTSTQPNCYYC  295 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEe-cCCceeeeeeecCCC----ceEEEEeChHHhccccccCCccCCCcceE
Confidence            46889999999 55443     225788887 344355667888876    9999999981             11    


Q ss_pred             EEEEEcCCCeEEEEEcCCCCCcccc
Q 041916          200 VLGIGHSMGWSSILVPGSGEPNFDS  224 (359)
Q Consensus       200 ~l~~~~~dg~~~i~~~~~~d~~~~~  224 (359)
                      ++|+|+.|+.+.+|.++...+.+-+
T Consensus       296 i~AvgSqDrSlSVW~T~~~RPl~vi  320 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTALPRPLFVI  320 (942)
T ss_pred             EEEEecCCccEEEEecCCCCchhhh
Confidence            5777888888877766555444433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=2.6e-26  Score=190.05  Aligned_cols=186  Identities=15%  Similarity=0.233  Sum_probs=159.5

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~   92 (359)
                      +-|..|||||++|++|+-||.|.+||..+|+....        |--+..+|.|+.||.|..++|+|+.||.|++|.+.+|
T Consensus       216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence            47889999999999999999999999999975443        3346789999999999999999999999999999999


Q ss_pred             cceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEE
Q 041916           93 APLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQIL  166 (359)
Q Consensus        93 ~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~  166 (359)
                      .++..|. +|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..|.+   .|+...|+++|  ++++++||+|++|
T Consensus       296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW  375 (508)
T KOG0275|consen  296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW  375 (508)
T ss_pred             hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence            9999998 9999999999999999999999999999999999999999954   58999999999  9999999999999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCe
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGW  209 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~  209 (359)
                      +..+. .++.++....  .+.+|+++..-|.+ ..++++.....
T Consensus       376 ~~Ktt-eC~~Tfk~~~--~d~~vnsv~~~PKnpeh~iVCNrsnt  416 (508)
T KOG0275|consen  376 HGKTT-ECLSTFKPLG--TDYPVNSVILLPKNPEHFIVCNRSNT  416 (508)
T ss_pred             cCcch-hhhhhccCCC--CcccceeEEEcCCCCceEEEEcCCCe
Confidence            97766 5666665442  45578887777654 34555544443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=196.36  Aligned_cols=250  Identities=18%  Similarity=0.260  Sum_probs=198.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      .|.||+ .+++++.++... .+.+..|.|.++++++|...|.+.+||+.+...+.++++|.+.+++++.+||+..+++||
T Consensus       395 SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s  473 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS  473 (888)
T ss_pred             cEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence            378999 789999999775 458999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCC-----Cc--ceEEE-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916           80 SGGTVTMWKPTT-----AA--PLIKM-----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHA  144 (359)
Q Consensus        80 ~dg~v~lwd~~~-----~~--~~~~~-----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i  144 (359)
                      .|.+|++||..-     +.  .+..+     ..-.+.|.|+++||||.+|+++=-|.+|++|-+.+.+...++   .-||
T Consensus       474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV  553 (888)
T KOG0306|consen  474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV  553 (888)
T ss_pred             CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence            999999999531     11  11111     123567999999999999999999999999999998876666   3479


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF  222 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~  222 (359)
                      .|+.+|||+  ++++|.|.+|++|-+..| .+-..+.+|..    .|.++.|.|....            |++++.|+.+
T Consensus       554 ~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdD----Svm~V~F~P~~~~------------FFt~gKD~kv  616 (888)
T KOG0306|consen  554 LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDD----SVMSVQFLPKTHL------------FFTCGKDGKV  616 (888)
T ss_pred             eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccC----ceeEEEEccccee------------EEEecCcceE
Confidence            999999999  888999999999998777 77888888876    8999999998744            4555666677


Q ss_pred             ccccCCCccCh--hhhchhhhhhhhhcCCCCceeeCCCCCeeeeccccc
Q 041916          223 DSWVANPFETS--KQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKK  269 (359)
Q Consensus       223 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~  269 (359)
                      +.|+...|+..  ..++..+|..+.- .|.....++.+..-+++.+++.
T Consensus       617 KqWDg~kFe~iq~L~~H~~ev~cLav-~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  617 KQWDGEKFEEIQKLDGHHSEVWCLAV-SPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             EeechhhhhhheeeccchheeeeeEE-cCCCCeEEeccCCceeEeeecc
Confidence            77776655542  3345556666542 2333344555555666666543

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.9e-24  Score=200.28  Aligned_cols=193  Identities=15%  Similarity=0.180  Sum_probs=151.0

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-------------GNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTM   86 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~l   86 (359)
                      ++...+++++..+++++.+.....|+...+..+             ..+.+|.++|.+++|+| ++.+|++|+.||+|++
T Consensus        23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI  102 (493)
T PTZ00421         23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG  102 (493)
T ss_pred             cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            344556667666677777777777776544322             13678999999999999 7889999999999999


Q ss_pred             EeCCCC-------cceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916           87 WKPTTA-------APLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        87 wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      ||+.++       .++..+.+|...|.+++|+|++ ++|++++.|++|++||+.++..+..+   ...|.+++|+|+|  
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l  182 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL  182 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence            998764       3567888999999999999975 68999999999999999999887777   3468999999999  


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc----CCCeEEEEEcCC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH----SMGWSSILVPGS  217 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----~dg~~~i~~~~~  217 (359)
                      +++++.|+.|++||+.++ ..+..+..|..   ..+..+.|.+++..+++++    .|+.+.+|....
T Consensus       183 Latgs~Dg~IrIwD~rsg-~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        183 LCTTSKDKKLNIIDPRDG-TIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             EEEecCCCEEEEEECCCC-cEEEEEecCCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            777888999999998776 45566666742   2356788999888777654    356666666543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=182.54  Aligned_cols=194  Identities=15%  Similarity=0.251  Sum_probs=163.4

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .+.+|..|.+. .+++.+|+.++++||+.|..-.+|++.+|..+..+.+|...|+++.||.+|.+||+|+-+|.|.||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            36789999997 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                      .++.....+...-..+.-+.|+|.+..|+.|+.||.|.+|.+.+....+.+.   .++++=.|.|+|  ++++..||+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            9998888886556678889999999999999999999999999977777774   468899999999  88888999999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +||+.++ .++..+..-   .+....++.++..+..++.|+.++
T Consensus       216 ~Wn~ktg-~p~~~~~~~---e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  216 VWNPKTG-QPLHKITQA---EGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             EEecCCC-ceeEEeccc---ccCcCCccccccccceeEeccCCc
Confidence            9998887 444433311   112455555555555555555555

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=186.11  Aligned_cols=209  Identities=18%  Similarity=0.233  Sum_probs=180.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +-++| ..++.+.+|++|... +.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++
T Consensus       243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs  322 (506)
T KOG0289|consen  243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS  322 (506)
T ss_pred             eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec
Confidence            45788 778889999999987 9999999999999999999999999988888888899999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-
Q 041916           80 SGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-  153 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-  153 (359)
                      .||+..+.|++++..+.....  ..-.+++++|+|||..|.+|+.|+.|++||+.++..+..|   .++|..++|+.+| 
T Consensus       323 ~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY  402 (506)
T KOG0289|consen  323 NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY  402 (506)
T ss_pred             CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce
Confidence            999999999999988776653  2235899999999999999999999999999999888888   4679999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       +++++.|+.|++||++.. .....+...   ....+.++.|.+.|.+|++++.+=.+.++.
T Consensus       403 ~Lat~add~~V~lwDLRKl-~n~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  403 WLATAADDGSVKLWDLRKL-KNFKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EEEEEecCCeEEEEEehhh-cccceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence             667778888999998766 445555444   233799999999999999997665444443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=5.4e-25  Score=199.95  Aligned_cols=210  Identities=13%  Similarity=0.239  Sum_probs=178.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-----CeE--EEEEe-----cCCCCeEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-----GEI--VGNFR-----TGLGRTDVMR   67 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~~~   67 (359)
                      +.||| .....+-+++.|.+. ++++.+||+..+++||.|.+|++||..-     |..  +-.+.     .-...|.|+.
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            45677 666777788899998 9999999999999999999999999741     111  11111     1235799999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916           68 VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHA  144 (359)
Q Consensus        68 ~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i  144 (359)
                      +||||.+|+++--|.+|.||-+++.+...++.+|.-||.|+..+||+++++|||.|..|++|-+.-|.|-..+   ...|
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv  595 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV  595 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988877   4679


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF  222 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~  222 (359)
                      .++.|-|..  ++++|.|+.|+-||.. ....++.+.+|..    .|++++.+|+|.+++++            +.|.++
T Consensus       596 m~V~F~P~~~~FFt~gKD~kvKqWDg~-kFe~iq~L~~H~~----ev~cLav~~~G~~vvs~------------shD~sI  658 (888)
T KOG0306|consen  596 MSVQFLPKTHLFFTCGKDGKVKQWDGE-KFEEIQKLDGHHS----EVWCLAVSPNGSFVVSS------------SHDKSI  658 (888)
T ss_pred             eEEEEcccceeEEEecCcceEEeechh-hhhhheeeccchh----eeeeeEEcCCCCeEEec------------cCCcee
Confidence            999999988  8999999999999944 3477888888876    89999999999877664            455567


Q ss_pred             ccccCC
Q 041916          223 DSWVAN  228 (359)
Q Consensus       223 ~~~~~~  228 (359)
                      ++|+..
T Consensus       659 RlwE~t  664 (888)
T KOG0306|consen  659 RLWERT  664 (888)
T ss_pred             Eeeecc
Confidence            777654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.1e-26  Score=205.91  Aligned_cols=204  Identities=19%  Similarity=0.292  Sum_probs=172.9

Q ss_pred             eEEEe-CC---CcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCE
Q 041916            2 PYIYN-RD---GTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGV   74 (359)
Q Consensus         2 v~iwd-~~---g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~   74 (359)
                      |-+|| ..   ...+..|..|... +++.|++. .++|++||.||+|++||++..+...++.+....|..++|+|. +..
T Consensus       112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~  191 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK  191 (839)
T ss_pred             EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce
Confidence            67899 32   3456688899987 99999986 578999999999999999998888888888889999999994 578


Q ss_pred             EEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec--cCCceeEEE
Q 041916           75 VSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL--PGHAKTLDF  149 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~  149 (359)
                      ++++...|.+.+||++.. .+...+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.+  ++.++  -.++.++.|
T Consensus       192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW  271 (839)
T KOG0269|consen  192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW  271 (839)
T ss_pred             EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence            999999999999999976 4567788999999999999999999999999999999998754  34444  468999999


Q ss_pred             cCCc---eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCe
Q 041916          150 SQKG---LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGW  209 (359)
Q Consensus       150 s~~g---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~  209 (359)
                      -|..   |.+++  .|-.|+|||++...-+...+..|..    .++.++|.. |-..|.+++.||.
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~----~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD----SVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCc----cccceeccCCCceeeEeecCccH
Confidence            9987   55444  4679999999888777888888865    789999976 4457788888884

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.4e-24  Score=178.16  Aligned_cols=184  Identities=18%  Similarity=0.220  Sum_probs=140.4

Q ss_pred             eEEEEEec-CCCEEEEEecCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLR-NHFLLASINKFGQLRYQDVTM-GEIV-GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      +.+|+||| ...+++.+|.||+|++|++.. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~  108 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQ  108 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceee
Confidence            39999999 567777999999999999986 3433 334568999999999999999999999999999999998 4666


Q ss_pred             EeccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCC
Q 041916           98 MLCHQGPVSALAFHPNGH--LMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSH  173 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~  173 (359)
                      +..|.++|.++.|-+...  .|+|||.|.+|+.||+|...++.++  +..+.++..-..-++++..++.|.+|++.++..
T Consensus       109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t  188 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT  188 (347)
T ss_pred             eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence            788999999999988666  7999999999999999999998877  667777766555467777889999999866532


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ........   -...+.+|+..++.+..+.|+..|
T Consensus       189 e~k~~~Sp---Lk~Q~R~va~f~d~~~~alGsiEG  220 (347)
T KOG0647|consen  189 EFKRIESP---LKWQTRCVACFQDKDGFALGSIEG  220 (347)
T ss_pred             hhhhhcCc---ccceeeEEEEEecCCceEeeeecc
Confidence            22211111   112344555444444444444444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=3.9e-24  Score=172.72  Aligned_cols=196  Identities=18%  Similarity=0.220  Sum_probs=169.3

Q ss_pred             EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916           14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~   92 (359)
                      .+++|..+ +.+.|+.+|.+|.+|+.|.+..+|=..+|+.+.++.+|.+.|+|+..+-+...+++|+.|.+++|||+.+|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47889999 99999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCC-------ceeeEec---cCCceeEEEcCCc--eE
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGK-----ECKIKIWDLRK-------YEVLQTL---PGHAKTLDFSQKG--LL  155 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~---~~~i~~~~~s~~g--l~  155 (359)
                      +.+..+.. ..+|..+.|+++|++++.++.     .+.|.++|++.       ..|...+   ...++.+-|+|-+  ++
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99998864 678999999999999887764     46899999983       3455555   4578999999999  78


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++..+|.|.+||..++...+.....|..    .|++++|+|+..++++++.|....+|.
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~----~Ind~q~s~d~T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSS----KINDLQFSRDRTYFITGSKDTTAKLVD  218 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhcc----ccccccccCCcceEEecccCccceeee
Confidence            8889999999999888677776666654    899999999998777766655444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.7e-25  Score=201.45  Aligned_cols=204  Identities=16%  Similarity=0.154  Sum_probs=171.8

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lw   87 (359)
                      ++++.|.+|.+- ..|+||.+ ++|++++.|.+|++|++....|+..|. |...|+|++|+| |.++|++|+-||.|+||
T Consensus       360 kP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             cchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            456788999986 99999976 478899999999999999999999987 899999999999 66899999999999999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----------cCCceeEEEcCCc---
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----------PGHAKTLDFSQKG---  153 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------~~~i~~~~~s~~g---  153 (359)
                      ++...+.+.-... ..-|++++|.|||++.++|+.+|.+++|++...+....+           ...|+.+.|.|..   
T Consensus       438 sI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~  516 (712)
T KOG0283|consen  438 SISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE  516 (712)
T ss_pred             ecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence            9987655443333 478999999999999999999999999999987765544           1259999999865   


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +++.+.|..|+|||+... .++..+.++..  ...-....|+.||++|++|+.|..+.+|-..+.+
T Consensus       517 vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n--~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  517 VLVTSNDSRIRIYDGRDK-DLVHKFKGFRN--TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEEecCCCceEEEeccch-hhhhhhccccc--CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            889999999999997554 67777777643  3345678999999999999999999999864433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=8.3e-25  Score=188.65  Aligned_cols=208  Identities=13%  Similarity=0.195  Sum_probs=175.8

Q ss_pred             cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 041916           17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL   95 (359)
Q Consensus        17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~   95 (359)
                      .|... .+++.||||+|||+|+.|..|.|||+++++.+..+.+|.+.|.+++|-.....+++++.|++|.+|++.....+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            66666 99999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC
Q 041916           96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~  172 (359)
                      .++.+|++.|.+|....-++.+.+|+.|+++++|++..-. .+..- .+.+.|++|-.+. +++++.+|.|.+|++....
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence            9999999999999988888888888899999999995432 22222 4578999998887 9999999999999987764


Q ss_pred             CccceeecccCCCC-------cceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916          173 HNYSRYMGHSMVKG-------YQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS  224 (359)
Q Consensus       173 ~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~  224 (359)
                      .....-..|...+.       ..|++++..|..+++++|+.+|.+++|.+..+-..+.+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~  418 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL  418 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence            44444445544232       27999999999999999988888888887766444443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.2e-24  Score=167.46  Aligned_cols=191  Identities=17%  Similarity=0.156  Sum_probs=158.4

Q ss_pred             ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE-----EEEEecCCCCeEEEEEcCC----CCEEEEEe-CCCeE
Q 041916           16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI-----VGNFRTGLGRTDVMRVNPF----NGVVSLGH-SGGTV   84 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp~----~~~l~sg~-~dg~v   84 (359)
                      +.|.+. .|.+|+|+|.+|++|++|.+|++.-.....+     -..|.-|.+.|..++|-.+    +.+|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            467776 9999999999999999999999987654322     2457789999999999653    35677654 57889


Q ss_pred             EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----------cCCceeEEEcCCc-
Q 041916           85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----------PGHAKTLDFSQKG-  153 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~s~~g-  153 (359)
                      ++-|...++.+..+.+|.+-|.++- +=+|-++++|+.|.+|++||+|-..++.++          ...|.+++..|.| 
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence            9999999999999999999998762 336789999999999999999998888877          1357899999999 


Q ss_pred             eE-EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          154 LL-AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       154 l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      ++ ++-.|..+.+||++.+ ..++.+..|..    .|.++.|+|...||++++.|..+++
T Consensus       245 ll~sg~~dssc~lydirg~-r~iq~f~phsa----dir~vrfsp~a~yllt~syd~~ikl  299 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRGG-RMIQRFHPHSA----DIRCVRFSPGAHYLLTCSYDMKIKL  299 (350)
T ss_pred             eeeeccCCCceEEEEeeCC-ceeeeeCCCcc----ceeEEEeCCCceEEEEecccceEEE
Confidence            44 4557899999997655 88888888876    8999999999999999998876554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.1e-24  Score=186.53  Aligned_cols=197  Identities=17%  Similarity=0.176  Sum_probs=169.8

Q ss_pred             CCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------
Q 041916           19 GAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT-------   90 (359)
Q Consensus        19 ~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~-------   90 (359)
                      .++ .+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+.||.+|++||.||.|.+|++.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            444 999999999999999899999999999999999999999999999999999999999999999999853       


Q ss_pred             --CCcceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCc
Q 041916           91 --TAAPLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSF  162 (359)
Q Consensus        91 --~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~  162 (359)
                        +.+++..|..|.-+|+++...+.  ..+++|+|.|.++++||+..+..+.++  +..+.+++.+|.+  +++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence              34678889999999999998774  457999999999999999999988777  7789999999998  888899999


Q ss_pred             EEEEcCCCCC---------------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          163 VQILGDFSGS---------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       163 i~i~d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      |.+.++....               .....+.+|.  .+.+|+|++.+-||..|++|+.||.+.+|...+
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~--~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE--NESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeecccc--CCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            9998764321               1123344553  235899999999999999999999988887655

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=191.11  Aligned_cols=213  Identities=15%  Similarity=0.185  Sum_probs=179.7

Q ss_pred             eEEEeCCC-c--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDG-T--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g-~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |.+|+..| +  .+.+|.+..+. +++.|.+++.++++++.|+.+++|++...+...++.+|.+.|+++.|......+++
T Consensus       199 Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs  278 (459)
T KOG0288|consen  199 IKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS  278 (459)
T ss_pred             hhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence            57888333 2  46777787776 99999999999999999999999999999999999999999999999887777999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--  153 (359)
                      |+.|.+|++||+....+..++.. .+.+.+|+.+  +..+++|..|++|++||+|+..++...  .+.|+++..+++|  
T Consensus       279 gs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~  355 (459)
T KOG0288|consen  279 GSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLE  355 (459)
T ss_pred             ccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeE
Confidence            99999999999998777666542 3456777776  557889999999999999999998888  5689999999999  


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +++++.|.++.++|+++. ....++.......+..++.+.|||++.|+++|+.||.+.||..-++
T Consensus       356 lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  356 LLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             EeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            889999999999998776 6666776665545667999999999999999888887777665443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=3.3e-24  Score=199.20  Aligned_cols=201  Identities=21%  Similarity=0.352  Sum_probs=168.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +++||| .+|.+.+.+.+|... .++...  ..++++|+.|.+|++|++.++.++..+.+|.++|+++..+  +.++++|
T Consensus       272 t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsg  347 (537)
T KOG0274|consen  272 TERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSG  347 (537)
T ss_pred             cEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEE
Confidence            589999 999999999999998 888774  4578889999999999999999999999999999999987  7899999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEeccCC---ceeEEEcCCce
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTLPGH---AKTLDFSQKGL  154 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~---i~~~~~s~~gl  154 (359)
                      +.||+|.+||+.+++++.++.+|.+.|.++.+.+. ..+++|+.|++|++||+++. +++..+.++   +.++.+...-+
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~L  426 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFL  426 (537)
T ss_pred             ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccccee
Confidence            99999999999999999999999999999988765 89999999999999999999 898888544   45555555558


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeec-ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMG-HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++++.|++|++||..++ .....+.+ |..    .|..+++.  ...+++++.+|.+.+|
T Consensus       427 vs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~----~v~~l~~~--~~~il~s~~~~~~~l~  479 (537)
T KOG0274|consen  427 VSSSADGTIKLWDAEEG-ECLRTLEGRHVG----GVSALALG--KEEILCSSDDGSVKLW  479 (537)
T ss_pred             EeccccccEEEeecccC-ceeeeeccCCcc----cEEEeecC--cceEEEEecCCeeEEE
Confidence            88999999999997666 66666666 433    68777776  3444444444433333

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=184.64  Aligned_cols=211  Identities=16%  Similarity=0.147  Sum_probs=174.2

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      ..+.+..|.+- .-+.||++|+||||++.|.+..||++...   +...++.+|..+|..+.||||.++|++++.|-.+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            35667788875 99999999999999999999999998654   347788899999999999999999999999999999


Q ss_pred             EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc----CCceeEEEcCCc--eEEEEc
Q 041916           87 WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----GHAKTLDFSQKG--LLAVGT  159 (359)
Q Consensus        87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~i~~~~~s~~g--l~~~~~  159 (359)
                      ||+.+|.....+. +|...+.+.+|.|||..+++|+.|++|..||+.. ..+..+.    ..|.++++++||  +++++.
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9999998887765 4457899999999999999999999999999974 3344442    358999999999  888889


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE-----------------------------
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS-----------------------------  210 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~-----------------------------  210 (359)
                      |..|++|+..+. .....+..+.     +|++++.|.+++++++.-.+..+                             
T Consensus       375 d~~i~l~~~e~~-~dr~lise~~-----~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  375 DKKIRLYNREAR-VDRGLISEEQ-----PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             ccceeeechhhh-hhhccccccC-----ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence            999999996543 2222333333     79999999999888775544422                             


Q ss_pred             ----EEEEcCCCCCccccccCC
Q 041916          211 ----SILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       211 ----~i~~~~~~d~~~~~~~~~  228 (359)
                          .++.+|+.|+.+++|+..
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~  470 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRI  470 (519)
T ss_pred             CCCcceEEecCCCceEEEEEcc
Confidence                457899999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=185.07  Aligned_cols=224  Identities=16%  Similarity=0.118  Sum_probs=178.2

Q ss_pred             eEEEe--CC--CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN--RD--GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd--~~--g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l   75 (359)
                      ..||.  .+  -+..+++-+|..+ .-+.||||.++|++|+.|..+.+||+.+|.+...+.. +...+.+++|.|||..+
T Consensus       248 aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~  327 (519)
T KOG0293|consen  248 AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF  327 (519)
T ss_pred             EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCcee
Confidence            34565  22  3357888899887 9999999999999999999999999999998877764 45689999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe--ccCCceeEEEcCC
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT--LPGHAKTLDFSQK  152 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~i~~~~~s~~  152 (359)
                      ++|+.|+++..||++ |.....+.+-. ..|.+++..+||+++++.+.|..|++|+..+......  ...+|+++++|.+
T Consensus       328 V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d  406 (519)
T KOG0293|consen  328 VTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD  406 (519)
T ss_pred             EecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC
Confidence            999999999999987 44455555433 3589999999999999999999999999887554433  3678999999999


Q ss_pred             c-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEE-----------------
Q 041916          153 G-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSI-----------------  212 (359)
Q Consensus       153 g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i-----------------  212 (359)
                      | ++.+ -.+..+++||+... ..+..|.+|..  +.-+..-||.- +..++++|+.|+.+.|                 
T Consensus       407 ~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq--~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  407 GKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQ--GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             CcEEEEEcccCeeEEeecchh-hHHHHhhcccc--cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence            9 4444 46789999998744 77888888864  22344555654 4489999999997776                 


Q ss_pred             --------------EEcCCCCCccccccCCC
Q 041916          213 --------------LVPGSGEPNFDSWVANP  229 (359)
Q Consensus       213 --------------~~~~~~d~~~~~~~~~~  229 (359)
                                    ++++++|++|++|...+
T Consensus       484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  484 TVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                          46778888888887654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=5e-25  Score=192.42  Aligned_cols=195  Identities=17%  Similarity=0.191  Sum_probs=153.5

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC---------------------------CeEEEE-------
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM---------------------------GEIVGN-------   55 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~---------------------------~~~~~~-------   55 (359)
                      .-..|++|+.+ .++++.|.|..|+|||.|-+|++||+..                           |..+..       
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            34567888887 9999999999999999999999999852                           111100       


Q ss_pred             -------------------------EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcc-eEEEe-----ccCC
Q 041916           56 -------------------------FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAP-LIKML-----CHQG  103 (359)
Q Consensus        56 -------------------------~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~-~~~~~-----~h~~  103 (359)
                                               .++|...++|.+|+|.. ..+++++.||++++||++..+. +..+.     +..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence                                     24788889999999986 5789999999999999986543 33332     3345


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH  173 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~  173 (359)
                      ++++.+|+|||++||+|+.||+|.+||.+...  +...+      ...|+||+||++|  |++-|.|+++++||++...+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            78999999999999999999999999986643  22222      2369999999999  88889999999999988767


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      ++....+-.  ...+-+.++|+|+.++|++|++-
T Consensus       399 pL~~~tgL~--t~~~~tdc~FSPd~kli~TGtS~  430 (641)
T KOG0772|consen  399 PLNVRTGLP--TPFPGTDCCFSPDDKLILTGTSA  430 (641)
T ss_pred             chhhhcCCC--ccCCCCccccCCCceEEEecccc
Confidence            766555442  34467899999999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.3e-23  Score=169.25  Aligned_cols=217  Identities=17%  Similarity=0.225  Sum_probs=181.9

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +|++|| ..+++...+....+-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+. .-.++.++|+-++.+++...
T Consensus        88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~  166 (313)
T KOG1407|consen   88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN  166 (313)
T ss_pred             eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec
Confidence            489999 9999998888777768899999999999999999999999998887766553 34678899998888888888


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L  154 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l  154 (359)
                      ..|.|.|......+++.++.+|+....||.|+|+|++||+|+.|..+.+||+...-+++.+   .-+|..++||.+|  +
T Consensus       167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l  246 (313)
T KOG1407|consen  167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML  246 (313)
T ss_pred             CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence            8899999999999999999999999999999999999999999999999999987777766   5689999999999  6


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      ++++.|..|-|-++.+|.+... +.     ..++...++|+|...+|+.+.+|...   .+....++++++-.
T Consensus       247 ASaSEDh~IDIA~vetGd~~~e-I~-----~~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG~  310 (313)
T KOG1407|consen  247 ASASEDHFIDIAEVETGDRVWE-IP-----CEGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFGL  310 (313)
T ss_pred             eccCccceEEeEecccCCeEEE-ee-----ccCCceeEEecCCCceeeEEecCCCC---ccccccceeEEecC
Confidence            6677889999999888844332 22     23389999999999999988877532   23334566666643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=9.4e-24  Score=178.16  Aligned_cols=205  Identities=14%  Similarity=0.165  Sum_probs=167.5

Q ss_pred             eEEEe-CCCcE----EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-------------------------CC
Q 041916            2 PYIYN-RDGTE----LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-------------------------MG   50 (359)
Q Consensus         2 v~iwd-~~g~~----~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-------------------------~~   50 (359)
                      +++|- ..+..    ++.-++|.+. -+++..++|..+++|+.|.+|.||+..                         ++
T Consensus       171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            55665 33332    3344589987 999999999999999999999999932                         12


Q ss_pred             eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916           51 EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD  130 (359)
Q Consensus        51 ~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd  130 (359)
                      .++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.+ ...++++..+|..++|++|+.|..|++||
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecC
Confidence            36667889999999999988 67899999999999999999998888765 45689999999999999999999999999


Q ss_pred             cCCce---eeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          131 LRKYE---VLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       131 ~~~~~---~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      .|++.   +.++|   .+.|.++.|+|..   +++++.|+++++||+++...++..+.+|..    .|.++.|.. +.++
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D----Kvl~vdW~~-~~~I  403 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND----KVLSVDWNE-GGLI  403 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc----eEEEEeccC-CceE
Confidence            99853   34445   4568999999988   888999999999999888668888888865    899999986 4456


Q ss_pred             EEEcCCCeEEEE
Q 041916          202 GIGHSMGWSSIL  213 (359)
Q Consensus       202 ~~~~~dg~~~i~  213 (359)
                      ++|+.|..++++
T Consensus       404 vSGGaD~~l~i~  415 (423)
T KOG0313|consen  404 VSGGADNKLRIF  415 (423)
T ss_pred             EeccCcceEEEe
Confidence            665555544443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=172.55  Aligned_cols=131  Identities=18%  Similarity=0.275  Sum_probs=113.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCC--EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHF--LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|+||| ....++..+-.|.+. +++.|.++-.  .|++|+.||.|.+|++....++.++++|.+.|+.++.+|.|.+.+
T Consensus        64 tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL  143 (362)
T KOG0294|consen   64 TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL  143 (362)
T ss_pred             cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence            689999 888888899999987 9999998754  899999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                      +.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+
T Consensus       144 sVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~  198 (362)
T KOG0294|consen  144 SVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDN  198 (362)
T ss_pred             EEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence            999999999999988875444431 1223459999999999888875 588888765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=185.64  Aligned_cols=205  Identities=18%  Similarity=0.153  Sum_probs=173.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +++|+ .++.+.++|.+|.+- +++.|.-....+++|+.|.+|++||+....|..++. ..+.+..|+.+  ...+++|.
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc
Confidence            68999 889999999999996 999998877779999999999999999988877765 33567777776  46789999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------CCceeEEEcCC
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------GHAKTLDFSQK  152 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~i~~~~~s~~  152 (359)
                      .|++|++||+++..+...+..+. .|+++..+++|..+++++.|.++.+.|+++......+.       ...+.+.|||+
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            99999999999999988887654 89999999999999999999999999999998887772       24688999999


Q ss_pred             c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          153 G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +  +++|+.||.|+||++.++ ++...+....  ....|++++|+|.|..|++++.++.+.+|
T Consensus       399 ~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~--s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFTG-KLEKVLSLST--SNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CceeeeccCCCcEEEEEccCc-eEEEEeccCC--CCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9  667788999999997776 4544444332  22269999999999999998888776665

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=168.23  Aligned_cols=194  Identities=14%  Similarity=0.192  Sum_probs=161.2

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWK   88 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd   88 (359)
                      ..+++|... .+++|+.+|..|++|+.|+++.+|++..+..+..  ..+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            345667776 9999999999999999999999999987755433  45788899999998854 7899999999999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEE-EEcCCcEE
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLA-VGTGSFVQ  164 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~-~~~d~~i~  164 (359)
                      ++++++...+....+.| -++|+|+|.++++++.|..|.+.|.++.+.+...  ...+..++|+-++ ++. ....|.|.
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            99999998887544444 5899999999999999999999999999887776  4567889998766 444 44459999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      |.....- ++++.+.+|+.    ...+|.|+|+|+++++|+.|..+++
T Consensus       173 ILsypsL-kpv~si~AH~s----nCicI~f~p~GryfA~GsADAlvSL  215 (313)
T KOG1407|consen  173 ILSYPSL-KPVQSIKAHPS----NCICIEFDPDGRYFATGSADALVSL  215 (313)
T ss_pred             EEecccc-ccccccccCCc----ceEEEEECCCCceEeeccccceeec
Confidence            9986644 78888889965    8999999999999999777764444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.7e-25  Score=201.16  Aligned_cols=194  Identities=19%  Similarity=0.288  Sum_probs=172.1

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .+..|.+|..+ .++.|+++..+|++|+.+|+|++||+..++.++++.+|...+..+.|+|.+.+.++|+.|+.+.+||+
T Consensus        62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence            34568899998 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                      +...+...+.+|...|.++.|+|+|.++++++.|.++++||++.|+.+..|+   +.+.++.|+|..  +..++.|++++
T Consensus       142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            9888999999999999999999999999999999999999999999999885   788999999998  55678899999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      +||+.+- ..+......    ...|.+.+|+|++..+.+|.....
T Consensus       222 f~dletf-e~I~s~~~~----~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  222 FWDLETF-EVISSGKPE----TDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eecccee-EEeeccCCc----cCCceeeeecCCceeeecCchhhh
Confidence            9997654 233322222    237999999999999888876653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.3e-23  Score=164.24  Aligned_cols=213  Identities=14%  Similarity=0.183  Sum_probs=166.0

Q ss_pred             CeEEEe--CCC--cEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYN--RDG--TELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd--~~g--~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~   71 (359)
                      +|+|+.  .+|  ..+.+|.+|.++ ..++|..  .|.+||+++.||.|.||.-.+|.  ....+..|...|++++|.|.
T Consensus        34 tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph  113 (299)
T KOG1332|consen   34 TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH  113 (299)
T ss_pred             cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccc
Confidence            478888  444  578999999998 9999966  79999999999999999988774  34566789999999999986


Q ss_pred             --CCEEEEEeCCCeEEEEeCCCC-c--ceEEEeccCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEEcC
Q 041916           72 --NGVVSLGHSGGTVTMWKPTTA-A--PLIKMLCHQGPVSALAFHPN---G-----------HLMATSGKECKIKIWDLR  132 (359)
Q Consensus        72 --~~~l~sg~~dg~v~lwd~~~~-~--~~~~~~~h~~~v~~i~~~~~---~-----------~~l~~~~~d~~i~iwd~~  132 (359)
                        |-.|++++.||.|.|.+.+.. .  ......+|.-.|++++|.|.   |           ..|++|+.|..|+||+..
T Consensus       114 eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  114 EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence              468999999999999998754 1  22334589999999999984   4           569999999999999998


Q ss_pred             Cce--eeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          133 KYE--VLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       133 ~~~--~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      ++.  .-..+   .+-|..++|.|.-      +++++.||++.||...........-.-+.  ....++++.|++.|.+|
T Consensus       194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~L  271 (299)
T KOG1332|consen  194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNIL  271 (299)
T ss_pred             CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEE
Confidence            853  22234   4568999999964      78889999999997543222222222222  12279999999999999


Q ss_pred             EEEcCCCeEEEEEc
Q 041916          202 GIGHSMGWSSILVP  215 (359)
Q Consensus       202 ~~~~~dg~~~i~~~  215 (359)
                      ++++.|..+.+|..
T Consensus       272 aVs~GdNkvtlwke  285 (299)
T KOG1332|consen  272 AVSGGDNKVTLWKE  285 (299)
T ss_pred             EEecCCcEEEEEEe
Confidence            88777776666653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=177.35  Aligned_cols=198  Identities=15%  Similarity=0.237  Sum_probs=158.5

Q ss_pred             cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           10 TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIV---GNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      .++.++.+|..- ++|+|||-. ..|+||..-+.|++|...+|.-.   ..|.+|...|-.++|||.. ..|++||.||+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            457889999988 999999942 34788888899999999987532   3466799999999999975 68999999999


Q ss_pred             EEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec---cCCceeEEEcCCc--
Q 041916           84 VTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        84 v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      |+|||++.+.  +.....+|.+.|+.|+|+..-.+||+|+.||+++|||+|+   ++++..|   .++|+++.|+|..  
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            9999999873  3334479999999999999888999999999999999997   4567666   6799999999976  


Q ss_pred             -eEEEEcCCcEEEEcCCCCC---------------CccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCe
Q 041916          154 -LLAVGTGSFVQILGDFSGS---------------HNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGW  209 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~  209 (359)
                       ++++|.|.+|.+||+....               -+.+.+.-|.+  ...+-.+.|+++-. +|++.+.||+
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccce
Confidence             7778899999999975421               12334555642  23578899998754 5666666774

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=1.6e-23  Score=197.79  Aligned_cols=188  Identities=12%  Similarity=0.178  Sum_probs=152.3

Q ss_pred             cCCC-e-EEEEEecCCCEEEEEe--cCCeEEEEECCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916           17 EHGA-V-LKLQFLRNHFLLASIN--KFGQLRYQDVTM------------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus        17 ~h~~-~-~~l~~s~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      +|.+ . .+++.+|||..+|||+  .||.++||+...            .+.+.+...|.+.|+|+.|+|||.+||+|++
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            4444 4 8999999999999999  899999999752            2356677789999999999999999999999


Q ss_pred             CCeEEEEeCCC------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916           81 GGTVTMWKPTT------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--  140 (359)
Q Consensus        81 dg~v~lwd~~~------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  140 (359)
                      |+.|.+|.-..                  .+.+..+.+|.+.|.+++|+|++.+|++++.|++|.+||.++++.+..+  
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            99999998652                  1245677899999999999999999999999999999999999888887  


Q ss_pred             -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeeccc--CCCCcceEEEEEeeCCCEEEEEc
Q 041916          141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHS--MVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                       .+.|-.+.|.|-|  +++-+.|++|+||.+..- .....+..+-  ......+..+.|+|||.+|++..
T Consensus       170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ccccccceEECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence             4568999999999  555678899999995442 2222222210  11234689999999999998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.4e-22  Score=166.91  Aligned_cols=204  Identities=16%  Similarity=0.159  Sum_probs=169.0

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      +.++.|+|.+..|++++.||++++||+........++ |..++.+++|.+ ...+++|+.||.|+++|++++.. ..+..
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igt   92 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGT   92 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeecc
Confidence            4999999998888888999999999998876555555 889999999987 46788999999999999998754 44567


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcccee
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~  178 (359)
                      |..+|+||.+++-...+++||.|++|++||.|...++..+  ...|.++..+.+.|++++.+..+.+||+++.....+..
T Consensus        93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~r  172 (323)
T KOG1036|consen   93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRR  172 (323)
T ss_pred             CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhc
Confidence            9999999999998889999999999999999986666666  45788888888779999999999999998875555333


Q ss_pred             ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE-------------------------------------------EEc
Q 041916          179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI-------------------------------------------LVP  215 (359)
Q Consensus       179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i-------------------------------------------~~~  215 (359)
                      ...   -...+.++++-|++.-+++++.+|.+.+                                           |++
T Consensus       173 eS~---lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT  249 (323)
T KOG1036|consen  173 ESS---LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT  249 (323)
T ss_pred             ccc---ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence            222   2347899999998888888888883332                                           788


Q ss_pred             CCCCCccccccCCCc
Q 041916          216 GSGEPNFDSWVANPF  230 (359)
Q Consensus       216 ~~~d~~~~~~~~~~~  230 (359)
                      |+.||-+.+|+..+-
T Consensus       250 gGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  250 GGSDGIVNIWDLFNR  264 (323)
T ss_pred             cCCCceEEEccCcch
Confidence            999999999997543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1e-23  Score=177.03  Aligned_cols=211  Identities=14%  Similarity=0.230  Sum_probs=168.5

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-------------------------------
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-------------------------------   48 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-------------------------------   48 (359)
                      |.||| .+..+..+|..|.+. ..|++..  ..++++|.|.+|+.|-+.                               
T Consensus        91 VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~  168 (433)
T KOG0268|consen   91 VKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQ  168 (433)
T ss_pred             EEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCce
Confidence            78999 888899999999987 9999876  567788888887777632                               


Q ss_pred             -------CCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE
Q 041916           49 -------MGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS  120 (359)
Q Consensus        49 -------~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~  120 (359)
                             ...++.++......|.++.|+|.. .+|++|+.|+.|.|||++++.|+..+.- ...-+.|+|+|.+-.+++|
T Consensus       169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a  247 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAA  247 (433)
T ss_pred             eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeec
Confidence                   223444455555678899999965 5788888999999999999999877642 3345789999988889999


Q ss_pred             eCCCeEEEEEcCCc-eeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916          121 GKECKIKIWDLRKY-EVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF  194 (359)
Q Consensus       121 ~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  194 (359)
                      +.|..++.||+|.. .++..+.+   .|.+++|||.|  ++++|.|.+|+||....+ .....|...   .-+.|.++.|
T Consensus       248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-~SRdiYhtk---RMq~V~~Vk~  323 (433)
T KOG0268|consen  248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-HSRDIYHTK---RMQHVFCVKY  323 (433)
T ss_pred             cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC-cchhhhhHh---hhheeeEEEE
Confidence            99999999999985 46666644   56899999999  999999999999996554 444444433   2247999999


Q ss_pred             eeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          195 RPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       195 ~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +.|.+++++||.|+.+++|-.-..+
T Consensus       324 S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  324 SMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             eccccEEEecCCCcceeeeecchhh
Confidence            9999999999999999999865543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.5e-23  Score=171.98  Aligned_cols=209  Identities=12%  Similarity=0.151  Sum_probs=181.4

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEEC------CC-----------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDV------TM-----------------------   49 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~------~~-----------------------   49 (359)
                      +-+||. .+|.++.++.+|.+. +++.|++.+.++++++.|++-.||..      ..                       
T Consensus       171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~  250 (481)
T KOG0300|consen  171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT  250 (481)
T ss_pred             ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence            357999 999999999999997 99999999999999999999999972      10                       


Q ss_pred             -----------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916           50 -----------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA  118 (359)
Q Consensus        50 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  118 (359)
                                 .-++..+.+|.+.|.+..|-..|..+++++.|.+..+||+.++.++..+.+|....+.++-+|..++++
T Consensus       251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV  330 (481)
T ss_pred             ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence                       024566889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEEcCCce-eeEecc---CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916          119 TSGKECKIKIWDLRKYE-VLQTLP---GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS  193 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~-~~~~~~---~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  193 (359)
                      +++.|.+.++||+|..- .+..|.   ..|+++.|.-+. +++++.|.+|++||+.+...++..+....     +++.++
T Consensus       331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-----~~NRva  405 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-----PANRVA  405 (481)
T ss_pred             EeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC-----ccceeE
Confidence            99999999999999643 345554   468999999888 89999999999999988877777776543     799999


Q ss_pred             EeeCCCEEEEEcCCCeEEEEE
Q 041916          194 FRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       194 ~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+..+.+++.-+.+..+++|.
T Consensus       406 vs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  406 VSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             eecCCceEEeccCCceEEEEe
Confidence            999888888877776666655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.2e-23  Score=170.73  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCC---CC-----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----
Q 041916           67 RVNPFNGVVSLGHSGGTVTMWKPT---TA-----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY----  134 (359)
Q Consensus        67 ~~sp~~~~l~sg~~dg~v~lwd~~---~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~----  134 (359)
                      +.||+|+++++++.---|.+|.+-   .|     ..+..+.+|.+.|.+++|+|++..+++.|.||++++||+.-.    
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~  314 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG  314 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence            345555555555555555555532   11     123457799999999999999999999999999999998531    


Q ss_pred             ---eeeEec-------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          135 ---EVLQTL-------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       135 ---~~~~~~-------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                         +.+...       .+....++++|.| .++++.+..|++|...++......-..|.    ..|.+++|+|+|+++++
T Consensus       315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~----~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS----TTISSISYSSDGKYIAT  390 (420)
T ss_pred             CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc----CceeeEEecCCCcEEee
Confidence               122222       2334589999999 99999999999999877643333334444    48999999999999999


Q ss_pred             EcCCCeEEEEEcCCCCCccccccC
Q 041916          204 GHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       204 ~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      ++..-..-+-.+.+.+..+..|+.
T Consensus       391 cGdr~vrv~~ntpg~~~~V~~~~~  414 (420)
T KOG2096|consen  391 CGDRYVRVIRNTPGWHSRVVKLNR  414 (420)
T ss_pred             ecceeeeeecCCCchhhHHHHhhc
Confidence            877643333335556666666653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.3e-23  Score=183.24  Aligned_cols=209  Identities=16%  Similarity=0.192  Sum_probs=165.4

Q ss_pred             CeEEEeCC--C--cEEEEec---cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYNRD--G--TELHCLK---EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd~~--g--~~~~~l~---~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~   71 (359)
                      +|+|||.+  |  ..+..|.   ...-++++..+|||+.|++|+.-.+|.|||+....+  ...+......+.+++.+||
T Consensus       441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD  520 (705)
T KOG0639|consen  441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  520 (705)
T ss_pred             eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc
Confidence            58999932  2  2333333   333358888999999999999999999999986543  2334444456778999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      .++.++++.||.|.|||+.+...+..|++|.+.+.||.+++||..|.||+-|.+|+.||+|.+..+...  ...|.++..
T Consensus       521 akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~  600 (705)
T KOG0639|consen  521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY  600 (705)
T ss_pred             cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence            999999999999999999999999999999999999999999999999999999999999998876554  789999999


Q ss_pred             cCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          150 SQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       150 s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|.+ ++++| .++.+.|... ++ .....+.-|    .+-|.++.|.+.|+++++.+.|.....|-+
T Consensus       601 cP~~dWlavGMens~vevlh~-sk-p~kyqlhlh----eScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHT-SK-PEKYQLHLH----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             CCCccceeeecccCcEEEEec-CC-ccceeeccc----ccEEEEEEecccCceeeecCchhhhhhccC
Confidence            9999 66666 4578888763 22 233333333    448999999999998888777765544443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=8.5e-23  Score=176.16  Aligned_cols=194  Identities=17%  Similarity=0.261  Sum_probs=153.1

Q ss_pred             cCCC-eEEEEEecCC-CEEEEEecCCeEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           17 EHGA-VLKLQFLRNH-FLLASINKFGQLRYQDVTMGE----------IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        17 ~h~~-~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      .|.+ ++.+.+-|+. .++|+.+..+.|.|||.....          +-..+.+|...-.+++|++.. ..|++|+.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            3444 5888898864 677888889999999986421          223678898877889999964 57999999999


Q ss_pred             EEEEeCCCCc-------ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--ceeeEec---cCCceeEEEc
Q 041916           84 VTMWKPTTAA-------PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK--YEVLQTL---PGHAKTLDFS  150 (359)
Q Consensus        84 v~lwd~~~~~-------~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~--~~~~~~~---~~~i~~~~~s  150 (359)
                      |++||++...       +...+.+|.+.|..++|+| +..+|++++.|+.+.|||+|+  .++....   .+.+.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999987542       3556779999999999999 566789999999999999995  3333333   5689999999


Q ss_pred             CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916          151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV  214 (359)
Q Consensus       151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~  214 (359)
                      |-+   +++++.|++|.+||+++...++..+.+|..    .|.+|.|+|... +|++++.|+.+.+|.
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d----ev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED----EVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCc----ceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            987   666778999999999988888888888866    899999999864 455544454444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.6e-23  Score=186.39  Aligned_cols=204  Identities=15%  Similarity=0.221  Sum_probs=175.7

Q ss_pred             eEEEe--CCCc-----EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEE-cC
Q 041916            2 PYIYN--RDGT-----ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRV-NP   70 (359)
Q Consensus         2 v~iwd--~~g~-----~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-sp   70 (359)
                      |++|+  ....     .+..++.|.+- +.++...+++.|+++|.|.+|++|+...+  -++.++..|...|.|++. .+
T Consensus        49 i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak  128 (735)
T KOG0308|consen   49 IRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK  128 (735)
T ss_pred             EEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc
Confidence            67887  2222     36778889886 99999899999999999999999999877  578889999999999999 78


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcc--eE--------EEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           71 FNGVVSLGHSGGTVTMWKPTTAAP--LI--------KML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~~~~~--~~--------~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      +..++|+|+-|+.|.+||++++..  +.        .+. ++..+|.+++-++.|..|++|+..+.|++||.++.+.+..
T Consensus       129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk  208 (735)
T KOG0308|consen  129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK  208 (735)
T ss_pred             CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee
Confidence            889999999999999999997732  22        223 7888999999999999999999999999999999887777


Q ss_pred             cc---CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          140 LP---GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       140 ~~---~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      +.   ..|.++..+++|  ++++++||+|++||+... .++.++..|..    .|+++..+|+-..+.+|+.||.+
T Consensus       209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e----~VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKE----GVWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             eeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccC----ceEEEeeCCCcceEEecCCCCcE
Confidence            74   458999999999  999999999999997554 78888888865    69999999999999999999943

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=5.9e-23  Score=169.28  Aligned_cols=168  Identities=18%  Similarity=0.303  Sum_probs=143.4

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lw   87 (359)
                      .+++|-.|.+. +++.|+|...+|++|+.|++|++||.......+.++  ....+|.++.|+|.|.+|++|..-.++++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            46788889887 999999999999999999999999997543222222  244689999999999999999999999999


Q ss_pred             eCCCCcceEEE---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEE
Q 041916           88 KPTTAAPLIKM---LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAV  157 (359)
Q Consensus        88 d~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~  157 (359)
                      |+++.++...-   ..|.+.|+++.+++.|++.++++.||.|++||--+++|+.++     ...|.+..|+.+|  +++.
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence            99998876553   368999999999999999999999999999999999999998     2368999999999  7888


Q ss_pred             EcCCcEEEEcCCCCCCccceee
Q 041916          158 GTGSFVQILGDFSGSHNYSRYM  179 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~  179 (359)
                      |.|..+++|.+.++ ..+..|.
T Consensus       324 G~DS~vkLWEi~t~-R~l~~Yt  344 (430)
T KOG0640|consen  324 GKDSTVKLWEISTG-RMLKEYT  344 (430)
T ss_pred             CCcceeeeeeecCC-ceEEEEe
Confidence            89999999998776 4444443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=1.2e-22  Score=183.27  Aligned_cols=216  Identities=13%  Similarity=0.173  Sum_probs=183.7

Q ss_pred             CeEEEeCCCcE---EEEeccCCCe--EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYNRDGTE---LHCLKEHGAV--LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd~~g~~---~~~l~~h~~~--~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      ++++|+..+..   .+.+.+|.+.  .+++|.+ ++-.|++|+.|++|.+|.+.+..++..+.+|.+.|.|+....++. 
T Consensus        36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-  114 (745)
T KOG0301|consen   36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-  114 (745)
T ss_pred             ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-
Confidence            47889843332   4667878875  4488876 555699999999999999999999999999999999999777776 


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ  151 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~  151 (359)
                      +++||.|.++++|-+  +++...+.+|+..|+++++-|++ .++|||.|.+|++|.-  ++.+++|.+   .|..+++-|
T Consensus       115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~  189 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD  189 (745)
T ss_pred             eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence            999999999999976  45666789999999999999988 8999999999999986  677788854   579999999


Q ss_pred             Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE-----------------
Q 041916          152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL-----------------  213 (359)
Q Consensus       152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~-----------------  213 (359)
                      ++ +++|+.||.|++|++ ++ ..+..+.+|+.    -|.++...+++..+++++.|++++||                 
T Consensus       190 ~~~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiW  263 (745)
T KOG0301|consen  190 DSHFLSCSNDGSIRLWDL-DG-EVLLEMHGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIW  263 (745)
T ss_pred             CCCeEeecCCceEEEEec-cC-ceeeeeeccce----EEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceE
Confidence            96 999999999999996 44 67788888866    89999988899999999999988774                 


Q ss_pred             ----------EcCCCCCccccccCC
Q 041916          214 ----------VPGSGEPNFDSWVAN  228 (359)
Q Consensus       214 ----------~~~~~d~~~~~~~~~  228 (359)
                                ++|+.||.+++|...
T Consensus       264 sa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  264 SAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEeeCCCEEEeccCceEEEEEec
Confidence                      668888999998875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=9.5e-23  Score=184.01  Aligned_cols=210  Identities=17%  Similarity=0.206  Sum_probs=173.4

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|.+|. .+..++.+|.+|..- .|++...++. |+|||.|.++++|-.  +++...+.+|..+|++++.-|.+ .+++|
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence            467888 677789999999986 8888777776 999999999999986  57777899999999999999987 88999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEE-EcCCc-
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLD-FSQKG-  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~-~s~~g-  153 (359)
                      |.|.+|++|.-  ++.+.+|.+|.+-|+.+++-|++ .|++|+.||.|++||+ ++.++..+   ...+.+++ ..+++ 
T Consensus       158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL  233 (745)
T ss_pred             cCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence            99999999974  77899999999999999998875 4789999999999999 67777777   44688888 44555 


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC----CCCCcccccc
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG----SGEPNFDSWV  226 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~----~~d~~~~~~~  226 (359)
                      ++++|.|++++||+..   .+.+.+. |   ++..|+++.+-++|+ +++|++||.+++|...    ..+..++.++
T Consensus       234 Ivs~gEDrtlriW~~~---e~~q~I~-l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~evl~afd  302 (745)
T KOG0301|consen  234 IVSTGEDRTLRIWKKD---ECVQVIT-L---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDEVLKAFD  302 (745)
T ss_pred             EEEecCCceEEEeecC---ceEEEEe-c---CccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHHHHHHHH
Confidence            8899999999999843   3444443 3   344899999999887 6789999999999765    4444555544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.1e-23  Score=163.89  Aligned_cols=197  Identities=17%  Similarity=0.215  Sum_probs=157.8

Q ss_pred             ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 041916           16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~   89 (359)
                      ..|.+. ..+...-.|..||||+.|++|+|+.++..   +.+.++.+|.+||..++|..  .|.+||+++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            356665 66666668999999999999999999764   46889999999999999965  7899999999999999997


Q ss_pred             CCCc--ceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCc-e-ee----EeccCCceeEEEcCC---c---
Q 041916           90 TTAA--PLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKY-E-VL----QTLPGHAKTLDFSQK---G---  153 (359)
Q Consensus        90 ~~~~--~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~-~-~~----~~~~~~i~~~~~s~~---g---  153 (359)
                      .++.  .......|...|++|+|.|  .|-.|++++.||.|.+.+.++. . ..    ...+-.+++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            7663  3445668999999999998  5678999999999999998864 1 11    111346799999885   3   


Q ss_pred             ----------eEEEEcCCcEEEEcCCCCCCc-cceeecccCCCCcceEEEEEeeCC----CEEEEEcCCCeEEEEEcC
Q 041916          154 ----------LLAVGTGSFVQILGDFSGSHN-YSRYMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       154 ----------l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~~i~~~~  216 (359)
                                |+++|.|+.|+||+...+.=. ...+.+|..    .|.+++|+|.-    .+|++++.||.+-||...
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d----wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD----WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch----hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence                      788999999999997665222 234677765    89999999975    478888899888777765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=9e-23  Score=175.47  Aligned_cols=190  Identities=13%  Similarity=0.139  Sum_probs=153.7

Q ss_pred             eEEEEEecC-------CCEEEEEecCCeEEEEECCCCeE---EE------------------EEecCCCCeEEEEEcCCC
Q 041916           21 VLKLQFLRN-------HFLLASINKFGQLRYQDVTMGEI---VG------------------NFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus        21 ~~~l~~s~~-------~~~l~s~~~dg~i~iwd~~~~~~---~~------------------~~~~~~~~v~~~~~sp~~   72 (359)
                      +.|++|...       |+++|.|+.|..|.|||+.-...   ..                  .-.+|...|..|+|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            378888542       58999999999999999863211   11                  122588888899998764


Q ss_pred             -CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---ceeeEeccCCceeE
Q 041916           73 -GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK---YEVLQTLPGHAKTL  147 (359)
Q Consensus        73 -~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~i~~~  147 (359)
                       +.|||||.|.+|.+||+.+++|..++..|.+.|.++.|+| .+.+|++||.|++|.+.|+|.   ......+.+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence             6899999999999999999999999999999999999999 577899999999999999995   23344558899999


Q ss_pred             EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916          148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV  214 (359)
Q Consensus       148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~  214 (359)
                      +|.|..   ++++..||+|+-+|++..+.++..+..|..    +|.++++++.-. +|++++.++.+.+|.
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~----~ISgl~~n~~~p~~l~t~s~d~~Vklw~  402 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD----EISGLSVNIQTPGLLSTASTDKVVKLWK  402 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC----CcceEEecCCCCcceeeccccceEEEEe
Confidence            999987   666778899999999988889999999976    999999998765 344555555444443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.2e-22  Score=165.27  Aligned_cols=205  Identities=16%  Similarity=0.125  Sum_probs=155.3

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      ..|+.|++.|.+||+|..||.|.|||+.|......+.+|..+|++++||++|+.|+++|.|..|.+||+..|.++..+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            69999999999999999999999999999998889999999999999999999999999999999999998876654431


Q ss_pred             ---------cCC---------------------C----------------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916          101 ---------HQG---------------------P----------------VSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus       101 ---------h~~---------------------~----------------v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                               |+.                     +                -.+..|++.|+++++|...|.+.+||..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence                     110                     0                022346777899999999999999999999


Q ss_pred             eeeEec---c-CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC---CCccceeecc---cCCCCcceEEEEEeeCCCEEE
Q 041916          135 EVLQTL---P-GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG---SHNYSRYMGH---SMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       135 ~~~~~~---~-~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~---~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      +++..+   . ..|.++.++..|  ++.-+.|..|+.|++..-   +.....-..|   ...+..+-.+++|+.+|.|++
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~  265 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC  265 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence            998887   2 468899999999  777889999999986521   0111111111   001223567899999999999


Q ss_pred             EEcCCCe-EEEEEcCCCCCcccccc
Q 041916          203 IGHSMGW-SSILVPGSGEPNFDSWV  226 (359)
Q Consensus       203 ~~~~dg~-~~i~~~~~~d~~~~~~~  226 (359)
                      +|+.... ..||-. +....+++..
T Consensus       266 a~s~~aHaLYIWE~-~~GsLVKILh  289 (405)
T KOG1273|consen  266 AGSARAHALYIWEK-SIGSLVKILH  289 (405)
T ss_pred             eccccceeEEEEec-CCcceeeeec
Confidence            8885543 333332 2333455544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.3e-23  Score=190.00  Aligned_cols=192  Identities=16%  Similarity=0.285  Sum_probs=154.7

Q ss_pred             EEEEEec-CCCEEEEEecCCeEEEEECCC---CeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceE
Q 041916           22 LKLQFLR-NHFLLASINKFGQLRYQDVTM---GEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        22 ~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      ..+.|.. +.++|||++..|.|.+||+..   .+.+..|..|...++++.|++.. .+|++||.||+|++||++......
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            5566664 468999999999999999986   45667888999999999999865 789999999999999999999888


Q ss_pred             EEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916           97 KMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDF  169 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~  169 (359)
                      ++.+....|++|.|+| .+.+|+++...|.+.+||+|... +...+   .++|.|+.|+|++  +++||.|++|+|||+.
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t  250 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT  250 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence            8988889999999999 67889999999999999999753 44444   7899999999998  7778899999999975


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCCeEEEEEcCCCCCccccccC
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      +. ........+   ..++|.+|.|-|...+. ++++.-          .|..|.+|++
T Consensus       251 ~~-~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDv  295 (839)
T KOG0269|consen  251 DS-RAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMV----------VDTSVHVWDV  295 (839)
T ss_pred             CC-CccceeEEe---ecceeeeeeeccCccchhhhhhcc----------ccceEEEEee
Confidence            44 333323223   45699999999988753 333322          3555666665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.4e-22  Score=181.65  Aligned_cols=171  Identities=17%  Similarity=0.247  Sum_probs=152.6

Q ss_pred             CeEEEe-CCC--cEEEEeccCCCe-EEEEE-ecCCCEEEEEecCCeEEEEECCCC--eEEEE--------Ee-cCCCCeE
Q 041916            1 YPYIYN-RDG--TELHCLKEHGAV-LKLQF-LRNHFLLASINKFGQLRYQDVTMG--EIVGN--------FR-TGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--------~~-~~~~~v~   64 (359)
                      +|.+|+ ..+  -++.++..|.+- .|+++ -++..++||||.|+.|.+||+.+|  ..+.+        +. ++..+|.
T Consensus        96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY  175 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY  175 (735)
T ss_pred             eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence            589999 444  578899999996 99999 778899999999999999999987  23332        22 6778999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---c
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---P  141 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~  141 (359)
                      +++.++.|..|++|+..+.+++||+++++.+..+.+|.+.|.++..++||+.++++|.||+|++||++..+++.++   .
T Consensus       176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888   4


Q ss_pred             CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          142 GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       142 ~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      ..+.++..+|+-  +++|+.||.|..=|+++.
T Consensus       256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            458888889877  899999999999998774

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=6.6e-22  Score=166.98  Aligned_cols=223  Identities=18%  Similarity=0.316  Sum_probs=162.2

Q ss_pred             CCC-eEEEEEecC--CCEEEEEecCCeEEEEECCC----------------CeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916           18 HGA-VLKLQFLRN--HFLLASINKFGQLRYQDVTM----------------GEIVGNFRTGLGRTDVMRVNPFN-GVVSL   77 (359)
Q Consensus        18 h~~-~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~s   77 (359)
                      |.+ ++.+..++.  ..+.|+-+..|.|.|||+..                .+++.++.+|.+.=..++|||-. ..|++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            444 477766664  46778888899999999852                24677888999888999999943 35888


Q ss_pred             EeCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCce---eeEe--ccCCceeEE
Q 041916           78 GHSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYE---VLQT--LPGHAKTLD  148 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~---~~~~--~~~~i~~~~  148 (359)
                      |..-+.|++|.+.++.-   ...+.+|...|..++|||. ...|++||.||+|+|||+|.+.   ++..  +.+.|+.|+
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS  309 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS  309 (440)
T ss_pred             CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence            88889999999888642   2345579999999999994 5679999999999999999972   3322  266899999


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCC--CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFS--GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS  224 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~  224 (359)
                      |+.+-  +++++.||++.|||++.  ...++..+.-|..    +|+++.|+|...           +++..++.|..+.+
T Consensus       310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~----pItsieW~p~e~-----------s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA----PITSIEWHPHED-----------SVIAASGEDNQITI  374 (440)
T ss_pred             ccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC----CeeEEEeccccC-----------ceEEeccCCCcEEE
Confidence            99887  56667789999999875  3356667777765    999999999875           44555667777788


Q ss_pred             ccCCCccChhhhchhhhhhhhhcCCCCceeeC
Q 041916          225 WVANPFETSKQRREKEVRSLLDKLPPETIMLN  256 (359)
Q Consensus       225 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~  256 (359)
                      |++.--.......... ..-|.++||.++.+.
T Consensus       375 WDlsvE~D~ee~~~~a-~~~L~dlPpQLLFVH  405 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEA-AEGLQDLPPQLLFVH  405 (440)
T ss_pred             EEeeccCChhhhcccc-ccchhcCCceeEEEe
Confidence            8764221111111111 111456777776554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.7e-21  Score=157.92  Aligned_cols=189  Identities=16%  Similarity=0.232  Sum_probs=147.5

Q ss_pred             ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 041916           16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd   88 (359)
                      .+|.+. +++.|.+.|+.+|+|+.|++|+|||...    ..+....+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468887 9999999999999999999999999643    347788899999999999965  479999999999999997


Q ss_pred             CC--C-------CcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC------ceeeEec----------c
Q 041916           89 PT--T-------AAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRK------YEVLQTL----------P  141 (359)
Q Consensus        89 ~~--~-------~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~------~~~~~~~----------~  141 (359)
                      -.  +       .....++....+.|++|.|.|  -|-.||+++.||.|+||+.-.      +...+.+          .
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            42  1       123445666788999999999  577899999999999997654      3333333          2


Q ss_pred             CCceeEEEcCCc----eEEEEcCC------cEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCC----CEEEEE
Q 041916          142 GHAKTLDFSQKG----LLAVGTGS------FVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYE----DVLGIG  204 (359)
Q Consensus       142 ~~i~~~~~s~~g----l~~~~~d~------~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~  204 (359)
                      .+..|+.|+|..    ++++|.+.      .+.||....+...   +..+.+|..    +|++++|.|+-    .+|+++
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d----pI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD----PIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC----cceeeeeccccCCceeeEEEe
Confidence            346899999876    77777665      8999985554322   334555544    99999999974    478999


Q ss_pred             cCCC
Q 041916          205 HSMG  208 (359)
Q Consensus       205 ~~dg  208 (359)
                      +.||
T Consensus       246 ~kDg  249 (361)
T KOG2445|consen  246 TKDG  249 (361)
T ss_pred             ecCc
Confidence            9998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.6e-22  Score=167.20  Aligned_cols=203  Identities=16%  Similarity=0.277  Sum_probs=172.9

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .+..|.+|.+- +.++.......+.+++.|.+-+||.+.+|.|+..+.+|.+.|+++.|++.+.++++++.|++..||..
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            34567788775 88887776778999999999999999999999999999999999999999999999999999999961


Q ss_pred             ------CC----------------------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916           90 ------TT----------------------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW  129 (359)
Q Consensus        90 ------~~----------------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iw  129 (359)
                            ..                                  ..|+..+.+|.+.|.+..|-..|..+++++.|.+-.+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence                  10                                  02455677899999999999999999999999999999


Q ss_pred             EcCCceeeEeccCC---ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          130 DLRKYEVLQTLPGH---AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       130 d~~~~~~~~~~~~~---i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      |+.++.++..+.++   .+.++-+|..  +++.+.|.+.++||.+..-..+..+.+|..    .|+++.|..+.+     
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd----tVTS~vF~~dd~-----  370 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD----TVTSVVFNTDDR-----  370 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc----ceeEEEEecCCc-----
Confidence            99999999999654   6778888888  667778999999998866666778888876    899999998764     


Q ss_pred             cCCCeEEEEEcCCCCCccccccCCCc
Q 041916          205 HSMGWSSILVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       205 ~~dg~~~i~~~~~~d~~~~~~~~~~~  230 (359)
                              +++|++|.++++|++...
T Consensus       371 --------vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  371 --------VVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             --------eeecCCCceEEEeeeccc
Confidence                    456788888888987544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=8.7e-22  Score=167.15  Aligned_cols=200  Identities=17%  Similarity=0.227  Sum_probs=156.7

Q ss_pred             EeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           14 CLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      .+.+|.++ ..++|+|. .+.|||||.|.+|.||.+..+       +++..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            45689987 99999994 578999999999999999754       3567788999999999999965 78999999999


Q ss_pred             EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----CceeEEEcCCc-eEEEE
Q 041916           84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----HAKTLDFSQKG-LLAVG  158 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~i~~~~~s~~g-l~~~~  158 (359)
                      |.+|++.+++.+.++. |++.|.+++|+.||.+|++++.|..|++||.|+++.+..-.+    ....+.|-.+| +++.|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999988887 999999999999999999999999999999999999887722    34667788888 77766


Q ss_pred             ----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916          159 ----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       159 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                          ++..+-+||..+-..++....-.   ....|.=--|.|+..++           +..|-+|++|+-|++.
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~iv-----------Yl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIV-----------YLCGKGDSSIRYFEIT  294 (472)
T ss_pred             cccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEE-----------EEEecCCcceEEEEec
Confidence                45799999966544432211111   22235545566666543           4455566666666553

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1e-21  Score=160.89  Aligned_cols=210  Identities=13%  Similarity=0.128  Sum_probs=167.6

Q ss_pred             ccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCe------E----EEE-----EecCCCCeEEEEEcC-CCCEEEE
Q 041916           16 KEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGE------I----VGN-----FRTGLGRTDVMRVNP-FNGVVSL   77 (359)
Q Consensus        16 ~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------~----~~~-----~~~~~~~v~~~~~sp-~~~~l~s   77 (359)
                      +.|.+. +++...+ .|+|+++|+.||.|.+||+..-.      .    +..     -.+|.-.|..+.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            457665 9999988 48999999999999999997532      0    111     125777899999999 5678999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcC
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQ  151 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~  151 (359)
                      ++.|.+++|||.++.+....|. .++.|.+-+++|-   .-++|+|..|-.|++.|+.+|..-+++.   +.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999988777664 5678889999982   3457888889999999999999988884   4689999999


Q ss_pred             Cc---eEEEEcCCcEEEEcCCCCCCccceeecccC----------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          152 KG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSM----------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       152 ~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      ..   +++++.||.|++||++....+...+..|+.          .+.+.|.+++|+.++.++++++.|..+++|.+.++
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            88   677889999999998765333333333321          13458999999999999999999999999999888


Q ss_pred             CCcccccc
Q 041916          219 EPNFDSWV  226 (359)
Q Consensus       219 d~~~~~~~  226 (359)
                      .++++-+-
T Consensus       279 ~ntl~~~g  286 (397)
T KOG4283|consen  279 RNTLREFG  286 (397)
T ss_pred             cccccccc
Confidence            88766553

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.3e-21  Score=178.40  Aligned_cols=189  Identities=14%  Similarity=0.152  Sum_probs=159.3

Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe
Q 041916           26 FLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV  105 (359)
Q Consensus        26 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v  105 (359)
                      +..++.+|++|+.+++|.+|....+..-..+.-..-++++++|+.+|.++|.||.|-.|++.++.+......+.+|.++|
T Consensus        62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV  141 (933)
T KOG1274|consen   62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV  141 (933)
T ss_pred             EeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence            33456699999999999999999887554454455789999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916          106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~  172 (359)
                      .++.|+|.+++||+.+.||.|++||+.++.+..++.           ..+..++|+|+|  +++.+.|+.|.+|+.... 
T Consensus       142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-  220 (933)
T KOG1274|consen  142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-  220 (933)
T ss_pred             eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-
Confidence            999999999999999999999999999988766652           235789999996  999999999999995554 


Q ss_pred             CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          173 HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      .....+....  ..+.+..++|+|+|.|||+++.+|.+.+|.+-.
T Consensus       221 e~~f~Lr~~~--~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  221 ELQFKLRDKL--SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeheeecccc--cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            4444443322  233499999999999999999999888887663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=7.8e-21  Score=156.26  Aligned_cols=210  Identities=14%  Similarity=0.113  Sum_probs=163.8

Q ss_pred             CeEEEe--CCCcEE-EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--E
Q 041916            1 YPYIYN--RDGTEL-HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--V   74 (359)
Q Consensus         1 ~v~iwd--~~g~~~-~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~   74 (359)
                      +|++|+  .+|..+ +....|.++ .+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+...  .
T Consensus        51 tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~c  129 (347)
T KOG0647|consen   51 TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQC  129 (347)
T ss_pred             ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcce
Confidence            589999  445544 344567787 999999999999999999999999999995 667888999999999987665  8


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-ec----cCCceeEEE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-TL----PGHAKTLDF  149 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~----~~~i~~~~~  149 (359)
                      |++||.|.+|+.||+++..++.++.- ++.+.++..  -..+++++..++.|.+|+++++.... ..    .-.+.|++.
T Consensus       130 l~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~  206 (347)
T KOG0647|consen  130 LVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC  206 (347)
T ss_pred             eEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence            99999999999999999999888763 556666655  33578889999999999998754322 22    346789998


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCC-CCccceeecccC----CC-CcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSG-SHNYSRYMGHSM----VK-GYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~----~~-~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .++.  ++.++..|.+.|..+..+ ...-.++..|..    .. -+.|++|+|+|....|+++++||...+|.
T Consensus       207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            8877  888888999998876553 233345556642    01 25789999999998888888777666665

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=169.56  Aligned_cols=224  Identities=19%  Similarity=0.248  Sum_probs=176.4

Q ss_pred             eEEEe-CCCcEEEEeccCCC-e-EEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGA-V-LKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~-~-~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +.+|| .+|..+.++++... . .++... .+.+++++. .-..|.+|.+..........--.++|.+++-+|+|.+|+.
T Consensus        20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a   98 (476)
T KOG0646|consen   20 CIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA   98 (476)
T ss_pred             eeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEe
Confidence            67899 99999988887632 2 333222 224555554 3558899998755444333334578999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------ceeeEeccC---Cce
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQTLPG---HAK  145 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~---~i~  145 (359)
                      |...|.|++|.+.+|..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++..         -.+++.|.+   +|+
T Consensus        99 g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT  178 (476)
T KOG0646|consen   99 GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT  178 (476)
T ss_pred             ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence            98999999999999999999999999999999999999999999999999998742         346666743   688


Q ss_pred             eEEEcCCc----eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE-----------
Q 041916          146 TLDFSQKG----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS-----------  210 (359)
Q Consensus       146 ~~~~s~~g----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~-----------  210 (359)
                      ++...+.|    +++++.|.++++||+..+ ..+..+...     .++.+++.+|.++.+.+|+.+|.+           
T Consensus       179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp-----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~  252 (476)
T KOG0646|consen  179 DLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFP-----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ  252 (476)
T ss_pred             EEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecC-----CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence            88888776    899999999999998777 444433322     279999999999999999999832           


Q ss_pred             -------------------------------------EEEEcCCCCCccccccCCCccC
Q 041916          211 -------------------------------------SILVPGSGEPNFDSWVANPFET  232 (359)
Q Consensus       211 -------------------------------------~i~~~~~~d~~~~~~~~~~~~~  232 (359)
                                                           .++++|+.||.+.+|++...+.
T Consensus       253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence                                                 3478999999999999865443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=4.1e-21  Score=165.34  Aligned_cols=193  Identities=20%  Similarity=0.209  Sum_probs=146.8

Q ss_pred             cCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc
Q 041916           17 EHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        17 ~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~   93 (359)
                      +|+++ .+|+|+.+ .+.|||||.|.+|.+||+.+|++..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|++...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            57776 78888875 5789999999999999999999999999999999999999965 789999999999999999543


Q ss_pred             ceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEcCCcEEE
Q 041916           94 PLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQI  165 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i  165 (359)
                      .....=...+.|-.++|+|.. ..+++++.||+|+-+|+|+. +++.++   .++|++|++++.-   +.+++.++.|.+
T Consensus       321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL  400 (463)
T ss_pred             ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence            322211235789999999954 45778889999999999985 788877   5689999998865   777889999999


Q ss_pred             EcCCCCCCccceeecccCCCCcceEEEEEeeCCCE-EEEEcCCCeEEE
Q 041916          166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSSI  212 (359)
Q Consensus       166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~dg~~~i  212 (359)
                      |++.....  .....|.. .-+...|++++|+-.+ |++|+..+..++
T Consensus       401 w~~~~~~~--~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~v  445 (463)
T KOG0270|consen  401 WKFDVDSP--KSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRV  445 (463)
T ss_pred             EeecCCCC--cccccccc-cccceeecccCCCcceEEEecCccceEEE
Confidence            99755422  22223332 2235677788887653 334333333333

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=2.7e-21  Score=167.13  Aligned_cols=200  Identities=16%  Similarity=0.151  Sum_probs=168.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |.||+ .+++.++++.+|.+. .+++|--...-|++++.|++|++|+++....+.++.+|++.|..+....-++.+.+|+
T Consensus       226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg  305 (479)
T KOG0299|consen  226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG  305 (479)
T ss_pred             EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc
Confidence            67999 999999999999997 9999998888899999999999999998888899999999999999888888888899


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cC--------Cc
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PG--------HA  144 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~--------~i  144 (359)
                      .|+++++|++... ....+.+|.+.+-|++|-.+ ..|++|+.||.|.+|++-..+++.+.       +.        .|
T Consensus       306 rDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi  383 (479)
T KOG0299|consen  306 RDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI  383 (479)
T ss_pred             ccceeEEEecccc-ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce
Confidence            9999999999543 34457789999999999754 57899999999999999988887765       12        57


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      ++++..|..  +++++.+|.|++|.+..+...+.++....  -.+.|++++|+++|..+++|.
T Consensus       384 tsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  384 TSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             eeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEccCCCEEEEec
Confidence            899999987  55667899999999887755555444332  123699999999999776653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=4e-21  Score=167.53  Aligned_cols=194  Identities=21%  Similarity=0.339  Sum_probs=165.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCC-EEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNG-VVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~-~l~   76 (359)
                      +|.||| ....+.+.+++|... +++.|+....|||+++..|.|.|..+.++.....|.... ..|.-+.|+|..+ +|.
T Consensus       102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~  181 (673)
T KOG4378|consen  102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS  181 (673)
T ss_pred             eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence            589999 655566788999986 999999999999999999999999999998877787653 4566899999875 567


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQK  152 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~  152 (359)
                      +++.+|.|.+||+....+...+. .|..+...|+|+|. ..+|++.+.|..|.+||++.......+  ..+.+.++|+++
T Consensus       182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~  261 (673)
T KOG4378|consen  182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC  261 (673)
T ss_pred             eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence            78999999999999888776654 89999999999995 456889999999999999987666555  678999999999


Q ss_pred             c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          153 G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       153 g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      |  ++++...|.|..||++....++..+..|..    .|++++|-|.-
T Consensus       262 G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~----sVt~vafq~s~  305 (673)
T KOG4378|consen  262 GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA----SVTRVAFQPSP  305 (673)
T ss_pred             ceEEEeecCCceEEEEecccCCCCceEeeeccc----ceeEEEeeecc
Confidence            9  566667899999999988888888888866    79999999865

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=2.2e-19  Score=158.67  Aligned_cols=211  Identities=11%  Similarity=0.187  Sum_probs=154.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|++|| .++..+..+..+..+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~   90 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIA   90 (300)
T ss_pred             EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEE
Confidence            378999 788888999888777889999999876 5667889999999999988877765543 5678999999877554


Q ss_pred             -eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916           79 -HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        79 -~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                       +.|+.|.+||+.+...+..+.. ...+.+++|+|+|.++++++.++ .+.+||..++..+...  ...+.+++|+|+| 
T Consensus        91 ~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  169 (300)
T TIGR03866        91 NEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK  169 (300)
T ss_pred             cCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence             5689999999998877766653 23468899999999999988765 5778899988776544  3456889999999 


Q ss_pred             -eEEEE-cCCcEEEEcCCCCCCccceeeccc--CC-CCcceEEEEEeeCCCEEEEE-cCCCeEEEEE
Q 041916          154 -LLAVG-TGSFVQILGDFSGSHNYSRYMGHS--MV-KGYQIGKVSFRPYEDVLGIG-HSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~p~~~~l~~~-~~dg~~~i~~  214 (359)
                       +++++ .++.|.+||+.++ .....+..+.  .. .......++|+|++++++++ ..++.+.+|.
T Consensus       170 ~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       170 ELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             EEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence             43444 5899999998766 3333332111  00 01124568899999975543 3344444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.2e-22  Score=184.02  Aligned_cols=193  Identities=19%  Similarity=0.304  Sum_probs=166.2

Q ss_pred             ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916           16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      -.|... .++..-..++.+++|+.|..+-+|.+.....+..+.+|.++|.++.|+++..+|++|+.+|+|++||+...+.
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~  104 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI  104 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence            346665 7777666778999999999999999988888888999999999999999999999999999999999999999


Q ss_pred             eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-eE-EEEcCCcEEEEcCC
Q 041916           95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG-LL-AVGTGSFVQILGDF  169 (359)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g-l~-~~~~d~~i~i~d~~  169 (359)
                      ++++.+|...+.++.|+|.+.++++|+.|+.+++||++...|.+.+.+   .+.++.|+|+| ++ .++.|..++|||+.
T Consensus       105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            999999999999999999999999999999999999998888888854   46889999999 44 45567999999965


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .+ .....|..|.+    .+.++.|+|..-.++.|+.|+.+.+|
T Consensus       185 ag-k~~~ef~~~e~----~v~sle~hp~e~Lla~Gs~d~tv~f~  223 (825)
T KOG0267|consen  185 AG-KLSKEFKSHEG----KVQSLEFHPLEVLLAPGSSDRTVRFW  223 (825)
T ss_pred             cc-ccccccccccc----cccccccCchhhhhccCCCCceeeee
Confidence            55 77788888876    89999999988666665555554443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=2.4e-19  Score=158.39  Aligned_cols=206  Identities=13%  Similarity=0.124  Sum_probs=151.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|++|| .+++.+..+..+..+..++|+|+++.++++ +.++.|.+||+.+++.+..+..+ ..+.+++|+|++.+++++
T Consensus        54 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~  132 (300)
T TIGR03866        54 TIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT  132 (300)
T ss_pred             eEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE
Confidence            378999 778888778777667788999999877554 56899999999998887777643 346889999999999988


Q ss_pred             eCCC-eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEecc--------C--Ccee
Q 041916           79 HSGG-TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTLP--------G--HAKT  146 (359)
Q Consensus        79 ~~dg-~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~--------~--~i~~  146 (359)
                      +.++ .+.+||+.++.....+.. ...+.+++|+|+|.+|+++ ..++.|.+||+.+++.+..+.        .  ....
T Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       133 SETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG  211 (300)
T ss_pred             ecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence            8775 467789988776555432 2345789999999988655 468999999999988766542        1  1356


Q ss_pred             EEEcCCc-e-E-EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916          147 LDFSQKG-L-L-AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILV  214 (359)
Q Consensus       147 ~~~s~~g-l-~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~  214 (359)
                      ++|+|+| . + +.+.++.+.+||+.++ .....+ .+.    ..+.+++|+|+|.+|+++. .+|.+.+|.
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~-~~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL-LVG----QRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE-EeC----CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            8899999 3 3 3445678999997655 333322 221    2688999999999877653 345444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=5.5e-20  Score=151.73  Aligned_cols=213  Identities=17%  Similarity=0.197  Sum_probs=161.5

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      ++++||-....+...-.|..+ .+++|.++ ..+++|+.||.|+.+|+.++.. ..+..|..+|.||.+++....+++||
T Consensus        36 slrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgs  113 (323)
T KOG1036|consen   36 SLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGS  113 (323)
T ss_pred             cEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcc
Confidence            466777333333333356666 99999874 5688999999999999998764 45667999999999999889999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-----ccCCceeEEEcCCc-
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-----LPGHAKTLDFSQKG-  153 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~i~~~~~s~~g-  153 (359)
                      .|++|.+||++.......+.. ...|.++..  .|+.|++|+.|..|.+||+|+.....+     ++-.+.|+++-|++ 
T Consensus       114 WD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e  190 (323)
T KOG1036|consen  114 WDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE  190 (323)
T ss_pred             cCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC
Confidence            999999999997655555543 336877766  577899999999999999998654332     24568999999965 


Q ss_pred             -eEEEEcCCcEEEEcCCCC---CCccceeecccCC-----CCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 -LLAVGTGSFVQILGDFSG---SHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                       +++++-+|.|.+=.+...   ......+..|...     -..+|++++|+|-...|++|+.||.+.+|.....
T Consensus       191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence             999999998776543332   1222344555321     1248999999999999999999999999986543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-19  Score=163.73  Aligned_cols=208  Identities=14%  Similarity=0.125  Sum_probs=168.6

Q ss_pred             CeEEEe--CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN--RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd--~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|.||+  ..--+...+.++.+.  -+++|++. ..|.+.+.+|.|.-||+.+++....+....+.|++++.+|.+..++
T Consensus        48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~  126 (691)
T KOG2048|consen   48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILA  126 (691)
T ss_pred             cEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEE
Confidence            578999  333456677777663  89999954 5577788899999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceE--EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cC----C
Q 041916           77 LGHSGGTVTMWKPTTAAPLI--KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PG----H  143 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~----~  143 (359)
                      .|+.||.+..++...+....  .+....+.|.+++|+|++..+++|+.||.|++||...+..++..       ..    -
T Consensus       127 IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  127 IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence            99999988888776664432  23345689999999999999999999999999999998776632       11    2


Q ss_pred             ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          144 AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       144 i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      |.++.|-.++ ++++.+.|+|.+||...+ ...+....|..    .|.+++..++++++++++.|+.+..+.
T Consensus       207 VWSv~~Lrd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~a----dVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  207 VWSVLFLRDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDA----DVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             EEEEEEeecCcEEEecCCceEEEEcccCc-chhhhhhhhhc----ceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            4566666777 777778899999997776 66676666655    899999999999999999998654443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.1e-19  Score=142.26  Aligned_cols=194  Identities=15%  Similarity=0.204  Sum_probs=154.3

Q ss_pred             eccCCCe-EEEEEecC----CCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           15 LKEHGAV-LKLQFLRN----HFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        15 l~~h~~~-~~l~~s~~----~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      |.-|.+. ..++|..+    +.+|++++. |..|++-|..+|+..+.+.+|.+.|.++ ++-+|.++++|+.|.+|++||
T Consensus       132 ~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwd  210 (350)
T KOG0641|consen  132 FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWD  210 (350)
T ss_pred             eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEe
Confidence            4557776 89999653    577888654 7889999999999999999999998776 233578999999999999999


Q ss_pred             CCCCcceEEEe--cc-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEE
Q 041916           89 PTTAAPLIKML--CH-----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLA  156 (359)
Q Consensus        89 ~~~~~~~~~~~--~h-----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~  156 (359)
                      ++-..++.++.  .|     .+.|.++++.|.|++|++|..|.+..+||+|.+++++.+   ...|.|+.|||..  +++
T Consensus       211 lrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt  290 (350)
T KOG0641|consen  211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT  290 (350)
T ss_pred             eeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEE
Confidence            99888877764  12     357899999999999999999999999999999999998   4579999999998  889


Q ss_pred             EEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          157 VGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++.|..|++-|+...-   -+......|..    .+..+.|+|..--+++.+.|.+..+|
T Consensus       291 ~syd~~ikltdlqgdla~el~~~vv~ehkd----k~i~~rwh~~d~sfisssadkt~tlw  346 (350)
T KOG0641|consen  291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKD----KAIQCRWHPQDFSFISSSADKTATLW  346 (350)
T ss_pred             ecccceEEEeecccchhhcCceEEEEeccC----ceEEEEecCccceeeeccCcceEEEe
Confidence            9999999999975431   12233344533    78889999988655555555444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=172.53  Aligned_cols=200  Identities=14%  Similarity=0.177  Sum_probs=164.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|.+|. .++..-..|...+-+ ++++|+.+|.++|.||.|-.|++.++.+......+++|.++|.++.|+|.+.+||+.
T Consensus        77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence            456666 555554455555566 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCce
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLC--------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAK  145 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~--------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~  145 (359)
                      +.||.|++||+.++....++.+        ....+..++|+|+|..++..+.|+.|++|+..++.....+.     ..+.
T Consensus       157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence            9999999999998876655542        13456789999998889999999999999999999887772     2378


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      +++|+|.|  +++++.+|.|.|||..+-    .   .|.  ....|++++|.|++..+..-...|.
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~----~---~~~--~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDTH----E---RHE--FKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecccc----h---hcc--ccceeEEEecCCCCCeeEEEeeccc
Confidence            99999999  566668999999997652    1   132  3447999999999987766555553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=3.1e-20  Score=171.09  Aligned_cols=206  Identities=16%  Similarity=0.195  Sum_probs=171.5

Q ss_pred             eEEEe-CCCcE-EEEeccC------CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcC
Q 041916            2 PYIYN-RDGTE-LHCLKEH------GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~g~~-~~~l~~h------~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp   70 (359)
                      .+.|+ ..... .+.|...      ..+++++.++.|++.+.|+..|+|-+|++++|-...++   ..|.++|++++...
T Consensus       424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~  503 (910)
T KOG1539|consen  424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG  503 (910)
T ss_pred             EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence            46787 33333 3444433      33499999999999999999999999999999988888   58999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916           71 FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL  147 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  147 (359)
                      -++.+++++.+|.+.+||.....++..+.. ...+.++..+.....++.+..|-.|+++|+.+.+.++.|   .+.|+++
T Consensus       504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~  582 (910)
T KOG1539|consen  504 TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM  582 (910)
T ss_pred             CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence            889999999999999999998887777653 345788999998889999999999999999999999988   4579999


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe-EEEEE
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW-SSILV  214 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-~~i~~  214 (359)
                      +|||||  +++++.|++|++||+.++ ..+..+.-.     .+++++.|+|+|++|++.+.|+. +.+|.
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~-~lID~~~vd-----~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTG-TLIDGLLVD-----SPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCc-ceeeeEecC-----CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            999999  888999999999999888 344433322     38999999999999999999853 44554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.4e-20  Score=161.40  Aligned_cols=209  Identities=17%  Similarity=0.287  Sum_probs=163.5

Q ss_pred             CeEEEe-CCCcE--EEEeccCCC--eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYN-RDGTE--LHCLKEHGA--VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd-~~g~~--~~~l~~h~~--~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |.|.|| .+++.  +..+.++..  ......||++++|+..|..|.|.+....+++.+.+++- .+.|..++|+.++..|
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKEL  359 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEE
Confidence            578999 66554  444555553  37888999999999999999999999999999998884 4789999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCe--EEEEEcCCCCEEEEEeCCCeEEEEEcCC------ceeeEec---cCCc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPV--SALAFHPNGHLMATSGKECKIKIWDLRK------YEVLQTL---PGHA  144 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~---~~~i  144 (359)
                      ++++.+|.|.+||+++..++..+.. .+.|  ++++.+++|.|||+|+..|.|.|||..+      .+|+..+   ...|
T Consensus       360 ~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I  438 (514)
T KOG2055|consen  360 LASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI  438 (514)
T ss_pred             EEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence            9999999999999999988888763 2323  5677789999999999999999999654      3566555   5689


Q ss_pred             eeEEEcCCc-eEEE-E--cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          145 KTLDFSQKG-LLAV-G--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       145 ~~~~~s~~g-l~~~-~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++|+|+|++ +++. +  ..+.+++-.+.+. ....-+..... +-+.|+|++|+|.+.+|++|..+|.+.+|
T Consensus       439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~-~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  439 TSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNT-KVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             eeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCC-cccceEEEEecCCCceEEeecCCCceeeE
Confidence            999999999 4443 3  3578888876543 22333332222 33469999999999999998888866665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=3e-20  Score=152.44  Aligned_cols=210  Identities=18%  Similarity=0.286  Sum_probs=161.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV   75 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l   75 (359)
                      |++||| ++-++...|+-...+.+-++||   .+.++|+|..+-.|++-|+.+|.+.+.+.+|.+.|.++.|+|... .|
T Consensus       125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence            689999 8888888888888888888888   367889999999999999999999999999999999999999775 58


Q ss_pred             EEEeCCCeEEEEeCCCC-cceEEE--------------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eEe
Q 041916           76 SLGHSGGTVTMWKPTTA-APLIKM--------------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQT  139 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~-~~~~~~--------------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~  139 (359)
                      ++|+.||.|++||++.. .++..+              .+|.+.|+.++|..+|.++++++.|..+++|+..+|+. +..
T Consensus       205 atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~  284 (397)
T KOG4283|consen  205 ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE  284 (397)
T ss_pred             EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc
Confidence            89999999999998743 222222              36778899999999999999999999999999988753 222


Q ss_pred             c----cCCcee----EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          140 L----PGHAKT----LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       140 ~----~~~i~~----~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      +    ...-.+    +.--..+ ++..-.++.+.++++..+ ..+..+..|..    .|.+.+|.|+-+.+.+|..|+.+
T Consensus       285 ~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k----~i~c~~~~~~fq~~~tg~~d~ni  359 (397)
T KOG4283|consen  285 FGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLK----RINCAAYRPDFEQCFTGDMNGNI  359 (397)
T ss_pred             cccccccccccceEEEeecccceEEEEecCCeEEEEEccCc-eEEEeeecccc----eeeEEeecCchhhhhccccCCcc
Confidence            2    111111    2211122 444556688999987766 56667777744    89999999988777666666554


Q ss_pred             EEEEc
Q 041916          211 SILVP  215 (359)
Q Consensus       211 ~i~~~  215 (359)
                      ..|.+
T Consensus       360 ~~w~p  364 (397)
T KOG4283|consen  360 YMWSP  364 (397)
T ss_pred             ccccc
Confidence            44444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.9e-20  Score=165.59  Aligned_cols=198  Identities=17%  Similarity=0.238  Sum_probs=156.4

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeC-------
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--VVSLGHS-------   80 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~sg~~-------   80 (359)
                      +-..+++|.+. .+++..|.|.+|++|+.||+|+||.+.+|.|+..+.. .+.|.|++|+|.+.  +||++-.       
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            34567899997 9999999999999999999999999999999998874 35789999998763  3443322       


Q ss_pred             -------------------------CCeEEEEeCC--------------CCcceEEEe----------------------
Q 041916           81 -------------------------GGTVTMWKPT--------------TAAPLIKML----------------------   99 (359)
Q Consensus        81 -------------------------dg~v~lwd~~--------------~~~~~~~~~----------------------   99 (359)
                                               ++.+-.|.-.              ..+.+..+.                      
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence                                     1223344311              011111111                      


Q ss_pred             -------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c--CCceeEEEcCCc--eEEEEcCC
Q 041916          100 -------------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P--GHAKTLDFSQKG--LLAVGTGS  161 (359)
Q Consensus       100 -------------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~--~~i~~~~~s~~g--l~~~~~d~  161 (359)
                                   ...+.|.++.|+|...+|++++. ..|++||+.....+..+ +  ..|.+++++|.|  +++++.|+
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~  629 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK  629 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence                         12456889999999999999886 67999999987777666 3  368999999988  99999999


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+..||+..+.++++.+.-|..    .+++|+|++.-.++++|+.||.+.++.
T Consensus       630 k~~WfDldlsskPyk~lr~H~~----avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEK----AVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhh----hhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999999888888898888876    899999999999999999999877765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=3.7e-20  Score=165.97  Aligned_cols=216  Identities=21%  Similarity=0.235  Sum_probs=158.8

Q ss_pred             EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 041916           14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~   89 (359)
                      ....|..+ ..+.|.|....|++++.|.++++||+.++.++..  +.+|.+.|.++||.|.+ ..|++|+.||.|.|||+
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            34568887 9999999667899999999999999999988776  88999999999999976 68999999999999998


Q ss_pred             CCCc--------------------c-------eEEEeccCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEEcCCceeeE
Q 041916           90 TTAA--------------------P-------LIKMLCHQGPVSA---LAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        90 ~~~~--------------------~-------~~~~~~h~~~v~~---i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~  138 (359)
                      +...                    +       +....++...|.+   +.+..|...||++|. |+.|++||+|......
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            5321                    1       1112234444554   555678889999887 9999999999754332


Q ss_pred             ec--------c------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          139 TL--------P------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       139 ~~--------~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      ..        +      -.+.++.....|  +++.+.|+.|++|++.+-.. +...+.++.. .. ....-..+|++.+|
T Consensus       255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~s-f~vks~lSpd~~~l  332 (720)
T KOG0321|consen  255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SS-FYVKSELSPDDCSL  332 (720)
T ss_pred             ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc-ce-eeeeeecCCCCceE
Confidence            22        1      135778888878  88888899999999866422 3333433321 11 12223558999999


Q ss_pred             EEEcCCCeEEE--------------------------------EEcCCCCCccccccCCCcc
Q 041916          202 GIGHSMGWSSI--------------------------------LVPGSGEPNFDSWVANPFE  231 (359)
Q Consensus       202 ~~~~~dg~~~i--------------------------------~~~~~~d~~~~~~~~~~~~  231 (359)
                      ++|+.|+...+                                +++++.|..+++|++.+..
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            99999985554                                3556888899999886543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=8e-21  Score=165.89  Aligned_cols=206  Identities=13%  Similarity=0.151  Sum_probs=165.4

Q ss_pred             CeEEEe-CCC--cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDG--TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|-||| ..-  .....+...... .+++.+||.++.++|..||.|.|||+.+...++.|++|...+.||..++||..|-
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW  567 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW  567 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee
Confidence            477899 322  222333333333 8899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEeccCCceeEEEcCCc-
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTLPGHAKTLDFSQKG-  153 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~i~~~~~s~~g-  153 (359)
                      +|+-|.+|+.||++++..+.... ..+.|.++.++|.+.++++|-.++.+.+.......  .++.....|.++.|.+.| 
T Consensus       568 TGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGk  646 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGK  646 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCc
Confidence            99999999999999987766543 46789999999999999999999998888776533  233336779999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                       +++.|.|+.+..|.+..+....+.-      ..++|.++..+.|.+++++|+.|....++
T Consensus       647 wfvStGkDnlLnawrtPyGasiFqsk------E~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  647 WFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             eeeecCchhhhhhccCccccceeecc------ccCcceeeeeccCceEEEecCCCcceEEE
Confidence             7888999999999876664333322      23389999999999888887777544443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=3.1e-20  Score=168.45  Aligned_cols=191  Identities=16%  Similarity=0.135  Sum_probs=158.2

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCC-cc
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF---NGVVSLGHSGGTVTMWKPTTA-AP   94 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~sg~~dg~v~lwd~~~~-~~   94 (359)
                      .++.+++.+|+|++||+|..-|.|+||++..-.....+..|...|.|+.|+-.   ..+||+++.|..|+|||+... .+
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            34589999999999999999999999999998888899999999999999753   478999999999999997532 23


Q ss_pred             eEEEeccCCC-------------------------------------------------eEEEEEcCCCCEEEEEeCCCe
Q 041916           95 LIKMLCHQGP-------------------------------------------------VSALAFHPNGHLMATSGKECK  125 (359)
Q Consensus        95 ~~~~~~h~~~-------------------------------------------------v~~i~~~~~~~~l~~~~~d~~  125 (359)
                      +.++.+|...                                                 +.++++.|...++++++.|..
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence            3444444333                                                 456777777888999999999


Q ss_pred             EEEEEcCCceeeEecc------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          126 IKIWDLRKYEVLQTLP------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       126 i~iwd~~~~~~~~~~~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      |+|||+.+++.++.|.      +....+...|.|  +++.+.|.++.+||..++ +++....+|..    .|+.+.|.+|
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE----~VTG~kF~nD  694 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSE----AVTGVKFLND  694 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcch----heeeeeeccc
Confidence            9999999999999993      456788899999  555668999999998777 78888889866    8999999999


Q ss_pred             CCEEEEEcCCCeEEEEE
Q 041916          198 EDVLGIGHSMGWSSILV  214 (359)
Q Consensus       198 ~~~l~~~~~dg~~~i~~  214 (359)
                      .+.|++.+.||.+.+|-
T Consensus       695 CkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  695 CKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             chhheeecCCceEEEEE
Confidence            98888777666555554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=6.9e-20  Score=159.87  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=155.0

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEecc
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH  101 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h  101 (359)
                      .|++......|+++|+..+.|+|||++..-+.+.+++|...|+++.++-...+||+++..|-|.|-.+.++.....|...
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~  162 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID  162 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence            67766666789999999999999999976677888999999999999998999999999999999999988877777644


Q ss_pred             CC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC
Q 041916          102 QG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       102 ~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~  172 (359)
                      .+ .|+-+.|+|..+. |.+++.+|.|.+||+....+...+    ..+...|+|+|..   ++++|.|..|.+||.... 
T Consensus       163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-  241 (673)
T KOG4378|consen  163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-  241 (673)
T ss_pred             CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-
Confidence            33 4668999997665 677899999999999988888777    5678999999988   778999999999997644 


Q ss_pred             Ccccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          173 HNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       173 ~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .....+ ..|      +..+++|.++|.+|++|+..|-+..+
T Consensus       242 ~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~Y  277 (673)
T KOG4378|consen  242 ASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAY  277 (673)
T ss_pred             cccceeeecC------CcceeeecCCceEEEeecCCceEEEE
Confidence            333333 233      89999999999999999999955544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=6.5e-19  Score=146.59  Aligned_cols=212  Identities=19%  Similarity=0.246  Sum_probs=162.0

Q ss_pred             eEEEe--CCC--cEEEEecc--CCCe-EEEEEecC----CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916            2 PYIYN--RDG--TELHCLKE--HGAV-LKLQFLRN----HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd--~~g--~~~~~l~~--h~~~-~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp   70 (359)
                      |.||.  .+|  ..++++..  |.+. ..++|+-+    ..+||.||.-|.|+|.|+.++++...+.+|...|+.+.|+|
T Consensus        66 vtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p  145 (385)
T KOG1034|consen   66 VTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHP  145 (385)
T ss_pred             EEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCC
Confidence            45566  444  33444433  5555 78888764    35789999999999999999999999999999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------
Q 041916           71 FN-GVVSLGHSGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-----------  135 (359)
Q Consensus        71 ~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------  135 (359)
                      +. ++++++|.|-+|++|++++..++..+-   +|.+.|.++.|+++|.+|+++|.|.+|.+|++...+           
T Consensus       146 ~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~  225 (385)
T KOG1034|consen  146 DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY  225 (385)
T ss_pred             CCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence            76 789999999999999999999988764   899999999999999999999999999999996210           


Q ss_pred             --------------eeEec-------------------------cCCc--------------------------------
Q 041916          136 --------------VLQTL-------------------------PGHA--------------------------------  144 (359)
Q Consensus       136 --------------~~~~~-------------------------~~~i--------------------------------  144 (359)
                                    ++..|                         .+.|                                
T Consensus       226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence                          00000                         0000                                


Q ss_pred             -----eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          145 -----KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       145 -----~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                           ...+|.|.+  ++.+...|.|.+||+....+...+-..|.. .+..|...+|+.|+.+|+...+|+++.-|.
T Consensus       306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence                 011233434  445556799999999887665555555554 677899999999999999988888665554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=9e-21  Score=180.27  Aligned_cols=200  Identities=19%  Similarity=0.261  Sum_probs=160.7

Q ss_pred             EEEeccCCCeEEEEEecCCCE----EEEEecCCeEEEEECCC---C---eEEEEEecCCCCeEEEEEcCCCC-EEEEEeC
Q 041916           12 LHCLKEHGAVLKLQFLRNHFL----LASINKFGQLRYQDVTM---G---EIVGNFRTGLGRTDVMRVNPFNG-VVSLGHS   80 (359)
Q Consensus        12 ~~~l~~h~~~~~l~~s~~~~~----l~s~~~dg~i~iwd~~~---~---~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~   80 (359)
                      +..+.....-+.++|.+.+..    ||.|..||.|.+||...   +   ..+.+...|.++|..+.|++... +||+|+.
T Consensus        58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~  137 (1049)
T KOG0307|consen   58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD  137 (1049)
T ss_pred             cccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence            344444444589999997654    88899999999999875   2   24567778999999999999764 9999999


Q ss_pred             CCeEEEEeCCCCcceEEE--eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEcCC
Q 041916           81 GGTVTMWKPTTAAPLIKM--LCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQK  152 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~  152 (359)
                      ||.|.|||++..+...++  ....+.|.+++|+. ..+.|++++.+|.+.|||+|..+++..+.     .++..++|+|+
T Consensus       138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence            999999999875543333  23467899999997 45678999999999999999998887772     34789999999


Q ss_pred             c---eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEc
Q 041916          153 G---LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVP  215 (359)
Q Consensus       153 g---l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~  215 (359)
                      +   +++++.|   -.|.+||++....+...+.+|..    .|.++.|++.+ .+|++++.|+.+-.|.+
T Consensus       218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~----GilslsWc~~D~~lllSsgkD~~ii~wN~  283 (1049)
T KOG0307|consen  218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR----GILSLSWCPQDPRLLLSSGKDNRIICWNP  283 (1049)
T ss_pred             CceeeeeecCCCCCceeEeecccccCCchhhhccccc----ceeeeccCCCCchhhhcccCCCCeeEecC
Confidence            8   6666644   48999999988888899988876    79999999987 78888888886655533

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.7e-19  Score=154.05  Aligned_cols=193  Identities=17%  Similarity=0.174  Sum_probs=161.4

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc
Q 041916           18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      |.+++++.|+|...+|++|+.|++++||-++.  ...+.++.-...||.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            55669999999999999999999999999863  235677776778999999999998 899999999999999987753


Q ss_pred             --eEEEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEc
Q 041916           95 --LIKMLCHQ-GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILG  167 (359)
Q Consensus        95 --~~~~~~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d  167 (359)
                        +..+.++. ..+....++|++++|+..|..|.|.+.-..++..+.++  ++.+..++|+.+|  +++++.+|.|.+||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence              23333443 35678889999999999999999999999999998888  7899999999999  88888899999999


Q ss_pred             CCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          168 DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +... .++..+.....   -.-+++|.++++.|||+|+..|++.|+.
T Consensus       373 l~~~-~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  373 LRQN-SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             cCCc-ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEec
Confidence            8776 66666665532   1346678889999999999999888875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.6e-19  Score=146.75  Aligned_cols=197  Identities=15%  Similarity=0.164  Sum_probs=152.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEE-------------
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVM-------------   66 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-------------   66 (359)
                      |-||| .+...-..|.+|..+ ++++||+||+.|+|+|.|..|.+||+..|.++..++- .++|+..             
T Consensus        47 vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~  125 (405)
T KOG1273|consen   47 VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVAT  125 (405)
T ss_pred             EEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEE
Confidence            67899 777888889999998 9999999999999999999999999999887766541 1222222             


Q ss_pred             ----------------------------------EEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC-CCeEEEEEc
Q 041916           67 ----------------------------------RVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVSALAFH  111 (359)
Q Consensus        67 ----------------------------------~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~i~~~  111 (359)
                                                        .|.+.|++|++|...|.+.++|..+.+++..+.-.. ..|..|.|+
T Consensus       126 ~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s  205 (405)
T KOG1273|consen  126 IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS  205 (405)
T ss_pred             EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence                                              244457789999999999999999999888887555 778999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC-------ce--eeEecc-----CCceeEEEcCCc-eEEEEc--CCcEEEEcCCCCCCc
Q 041916          112 PNGHLMATSGKECKIKIWDLRK-------YE--VLQTLP-----GHAKTLDFSQKG-LLAVGT--GSFVQILGDFSGSHN  174 (359)
Q Consensus       112 ~~~~~l~~~~~d~~i~iwd~~~-------~~--~~~~~~-----~~i~~~~~s~~g-l~~~~~--d~~i~i~d~~~~~~~  174 (359)
                      ..|..|+.-+.|+.|+.|+++.       +.  +.+.+.     ..=.+++||.+| ++.+++  ...++||....| ..
T Consensus       206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sL  284 (405)
T KOG1273|consen  206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SL  284 (405)
T ss_pred             ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-ce
Confidence            9999999999999999999863       11  223332     234788999999 444443  468999995555 67


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      +..+.+.   .+....++.|+|-...+++
T Consensus       285 VKILhG~---kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  285 VKILHGT---KGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             eeeecCC---chhheeecccccceeeeee
Confidence            7766655   3457889999998766554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.2e-19  Score=161.67  Aligned_cols=186  Identities=17%  Similarity=0.243  Sum_probs=151.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~-  100 (359)
                      +-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ 
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            445677 345666665 45899999999987766666688999999999999999999999999999999999999988 


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN  174 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~  174 (359)
                      |...|.+++|+  +..+.+|+.|+.|..+|+|..+.... +   ...|..+.|++++  +++++.|+.+.|||. ....+
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEP  335 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC-CCccc
Confidence            99999999998  67899999999999999998765444 3   4568999999999  777889999999996 44477


Q ss_pred             cceeecccCCCCcceEEEEEeeCC-CEEEEEc--CCCeEEEEEcC
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGH--SMGWSSILVPG  216 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~--~dg~~~i~~~~  216 (359)
                      ...+..|..    .|.+++|+|-. .+||+|+  .|+.+++|.+.
T Consensus       336 ~~~~~~H~a----AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  336 KFTFTEHTA----AVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             cEEEeccce----eeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            788888876    89999999965 4555543  34445554443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.83  E-value=4.2e-18  Score=149.14  Aligned_cols=212  Identities=17%  Similarity=0.247  Sum_probs=163.0

Q ss_pred             CeEEEe-CCCcEE---EEeccCCC--eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTEL---HCLKEHGA--VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~---~~l~~h~~--~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      +++.|+ ..|...   ..+..+..  +.|++|.++|. ++||..+|.|.||+..+.+.......|.+.|.+++.-.+|.+
T Consensus       223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl  301 (626)
T KOG2106|consen  223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL  301 (626)
T ss_pred             eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence            478899 555443   34555544  49999999987 679999999999999888888777799999999999998866


Q ss_pred             EEEEeCCCeEEEEeCCCC-----------cceE-----------------------------EEeccCCCeEEEEEcCCC
Q 041916           75 VSLGHSGGTVTMWKPTTA-----------APLI-----------------------------KMLCHQGPVSALAFHPNG  114 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~-----------~~~~-----------------------------~~~~h~~~v~~i~~~~~~  114 (359)
                      |- |+.|..|..||-+-.           -+++                             ...+|.+....++.+|+.
T Consensus       302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~  380 (626)
T KOG2106|consen  302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK  380 (626)
T ss_pred             ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence            55 999999999982100           0011                             123567778899999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeE--eccCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEE
Q 041916          115 HLMATSGKECKIKIWDLRKYEVLQ--TLPGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGK  191 (359)
Q Consensus       115 ~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  191 (359)
                      +.+++++.|+.+++|+  ..++..  .+..++.|+.|+|.| ++++...|...+.|..+. ..+.   .|.  .+.+++.
T Consensus       381 ~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~-~lv~---~~~--d~~~ls~  452 (626)
T KOG2106|consen  381 NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ-DLVT---IHT--DNEQLSV  452 (626)
T ss_pred             hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc-eeEE---EEe--cCCceEE
Confidence            9999999999999999  344443  347889999999999 667778899999996553 2222   222  1348999


Q ss_pred             EEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916          192 VSFRPYEDVLGIGHSMGWSSILVPGSGEPNF  222 (359)
Q Consensus       192 ~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~  222 (359)
                      ++|+|+|.+||+|+.|+.+.++....+...+
T Consensus       453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y  483 (626)
T KOG2106|consen  453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKY  483 (626)
T ss_pred             EEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence            9999999999999999998887655444433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=2.7e-19  Score=148.58  Aligned_cols=201  Identities=21%  Similarity=0.255  Sum_probs=156.8

Q ss_pred             eEEEe-CCCcEEEEecc--CC----CeEEEEEecCCCEEEEEecCCeEEEEEC-CCCeE--EEEEecC-----CCCeEEE
Q 041916            2 PYIYN-RDGTELHCLKE--HG----AVLKLQFLRNHFLLASINKFGQLRYQDV-TMGEI--VGNFRTG-----LGRTDVM   66 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~--h~----~~~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~--~~~~~~~-----~~~v~~~   66 (359)
                      |.+|| -+|+....+++  |.    ...+++|+|||.+|+.|. ...|++||+ +.|..  +.....+     .+-+.|+
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            78999 89988777764  32    238999999999998765 669999999 45542  2222222     5678999


Q ss_pred             EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc-eeeEeccCC
Q 041916           67 RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKY-EVLQTLPGH  143 (359)
Q Consensus        67 ~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~  143 (359)
                      +|+|.. ..++.|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|+. |..|-.||+|.. .++..+..+
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence            999966 58999999999999988888899999999999999999999999999885 678999999974 456666433


Q ss_pred             c----e--eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          144 A----K--TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       144 i----~--~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      +    .  -+...|.|  +++++.+|.|++||+..-...+..+..+..    .++.++++|--.++++++..
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd----~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD----TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc----cccceecCcccceeeeccCc
Confidence            3    2  34456778  455558999999998775566677777755    89999999997777776554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=7.4e-19  Score=159.62  Aligned_cols=227  Identities=17%  Similarity=0.240  Sum_probs=170.0

Q ss_pred             CeEEEe-CCCcE---EEEeccCCCe-EEEEEecC-----------CCEEEEEecCCeEEEEECCCC---eEEEE------
Q 041916            1 YPYIYN-RDGTE---LHCLKEHGAV-LKLQFLRN-----------HFLLASINKFGQLRYQDVTMG---EIVGN------   55 (359)
Q Consensus         1 ~v~iwd-~~g~~---~~~l~~h~~~-~~l~~s~~-----------~~~l~s~~~dg~i~iwd~~~~---~~~~~------   55 (359)
                      .+|||| .+-..   .+.+--|... +++..-|.           ..-+.||+.|++|++||+..+   ...+.      
T Consensus       347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~  426 (1080)
T KOG1408|consen  347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN  426 (1080)
T ss_pred             eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence            379999 43322   2334445544 66655441           124889999999999999752   11110      


Q ss_pred             ----------------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916           56 ----------------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA  107 (359)
Q Consensus        56 ----------------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~  107 (359)
                                                  .-...-.+.+++.+|+|++||+|..-|+++||++........+.+|...|.|
T Consensus       427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc  506 (1080)
T KOG1408|consen  427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC  506 (1080)
T ss_pred             hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence                                        0012335899999999999999999999999999998888899999999999


Q ss_pred             EEEcC---CCCEEEEEeCCCeEEEEEcCC-ceeeEec-------------------------------------------
Q 041916          108 LAFHP---NGHLMATSGKECKIKIWDLRK-YEVLQTL-------------------------------------------  140 (359)
Q Consensus       108 i~~~~---~~~~l~~~~~d~~i~iwd~~~-~~~~~~~-------------------------------------------  140 (359)
                      +.|+.   ..++||+++.|..|.+||+.. +.++.++                                           
T Consensus       507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~  586 (1080)
T KOG1408|consen  507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL  586 (1080)
T ss_pred             EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence            99985   456799999999999999842 1111111                                           


Q ss_pred             ---------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          141 ---------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       141 ---------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                               ...+..++..|..  +++++.|..|+|||+.++ +....+.+... +.+....+...|.|.||++...|..
T Consensus       587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~-~eG~lIKv~lDPSgiY~atScsdkt  664 (1080)
T KOG1408|consen  587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRD-HEGDLIKVILDPSGIYLATSCSDKT  664 (1080)
T ss_pred             ccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeeccccc-CCCceEEEEECCCccEEEEeecCCc
Confidence                     1124567777776  778899999999998777 66777776554 5557888999999999999999986


Q ss_pred             EEE------------------------------EEcCCCCCccccccCCC
Q 041916          210 SSI------------------------------LVPGSGEPNFDSWVANP  229 (359)
Q Consensus       210 ~~i------------------------------~~~~~~d~~~~~~~~~~  229 (359)
                      +.+                              +++.++|+.|.+|.+..
T Consensus       665 l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  665 LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            555                              57889999999999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=6.4e-19  Score=147.35  Aligned_cols=172  Identities=17%  Similarity=0.281  Sum_probs=139.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCeEEEE--EecCC-CCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGEIVGN--FRTGL-GRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~-~~v~~~~~sp~~~   73 (359)
                      .|++|| .+|+.+..++++... +.+.|..  ....+.+|+.||+|++||+++......  +..+. .+..|++-+-.++
T Consensus        51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~  130 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN  130 (376)
T ss_pred             eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC
Confidence            489999 889999999999987 9999987  457899999999999999998654443  33444 4667777776788


Q ss_pred             EEEEEe----CCCeEEEEeCCCCcc-eEEE-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce----eeEec--
Q 041916           74 VVSLGH----SGGTVTMWKPTTAAP-LIKM-LCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE----VLQTL--  140 (359)
Q Consensus        74 ~l~sg~----~dg~v~lwd~~~~~~-~~~~-~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~----~~~~~--  140 (359)
                      ++++|.    .|-.|.+||++..+. +..+ ..|.+.|+++.|+| +.++|++||.||.|.+||+....    ++..+  
T Consensus       131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~  210 (376)
T KOG1188|consen  131 IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH  210 (376)
T ss_pred             eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc
Confidence            888875    567899999998765 5544 48999999999999 67899999999999999997642    23333  


Q ss_pred             cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC
Q 041916          141 PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       141 ~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~  172 (359)
                      ...|.++.|+..+   +++.+......+|++..+.
T Consensus       211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             cceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            4568999999988   7888889999999976653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.3e-17  Score=137.73  Aligned_cols=211  Identities=10%  Similarity=0.125  Sum_probs=147.5

Q ss_pred             CeEEEe-CC--Cc--EEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECC---------CCeEEEEEecCCCCe
Q 041916            1 YPYIYN-RD--GT--ELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVT---------MGEIVGNFRTGLGRT   63 (359)
Q Consensus         1 ~v~iwd-~~--g~--~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v   63 (359)
                      +|.||| ..  |.  +-...+.|.+. ..+.|.+  .|+.+|+++.|+++.||.=.         ......++....+.|
T Consensus        36 ~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV  115 (361)
T KOG2445|consen   36 TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSV  115 (361)
T ss_pred             cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcce
Confidence            578999 33  32  45567788887 9999966  58999999999999999852         122455667778899


Q ss_pred             EEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc------ceEEEe-------ccCCCeEEEEEcC---CCCEEEEEeCC--
Q 041916           64 DVMRVNPF--NGVVSLGHSGGTVTMWKPTTAA------PLIKML-------CHQGPVSALAFHP---NGHLMATSGKE--  123 (359)
Q Consensus        64 ~~~~~sp~--~~~l~sg~~dg~v~lwd~~~~~------~~~~~~-------~h~~~v~~i~~~~---~~~~l~~~~~d--  123 (359)
                      +.+.|.|.  |-.||+++.||.|+||+....-      ....++       .+..+..|+.|+|   ...+||+|+.+  
T Consensus       116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a  195 (361)
T KOG2445|consen  116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA  195 (361)
T ss_pred             eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence            99999995  6789999999999999865432      222222       3566788999998   45678888765  


Q ss_pred             ---CeEEEEEcCCc----eeeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCC---------------
Q 041916          124 ---CKIKIWDLRKY----EVLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGS---------------  172 (359)
Q Consensus       124 ---~~i~iwd~~~~----~~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~---------------  172 (359)
                         +.+.||.....    ..+.++   +.+|++++|.|+-      +++++.|| |+||.+....               
T Consensus       196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~  274 (361)
T KOG2445|consen  196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMT  274 (361)
T ss_pred             ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcc
Confidence               47888866442    233344   5689999999974      55667788 9999975311               


Q ss_pred             -CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          173 -HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       173 -~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                       -.+..+..+.. |.+.|+.+.|+-.|..|++.+.||.+++|
T Consensus       275 ~l~v~~vs~~~~-H~~~VWrv~wNmtGtiLsStGdDG~VRLW  315 (361)
T KOG2445|consen  275 DLPVEKVSELDD-HNGEVWRVRWNMTGTILSSTGDDGCVRLW  315 (361)
T ss_pred             ccceEEeeeccC-CCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence             01112222222 44499999999999776665555544444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=2.6e-19  Score=160.61  Aligned_cols=158  Identities=18%  Similarity=0.279  Sum_probs=131.5

Q ss_pred             EEeccCCCeEEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           13 HCLKEHGAVLKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        13 ~~l~~h~~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      -.+.....++.+.|.| |...||+++.||.|++|.+..+       .+...+..|...|+++.|+|-. ..|++++.|-+
T Consensus       622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence            4444555569999999 5688999999999999999764       2456688899999999999954 68999999999


Q ss_pred             EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEeccCCc----eeEEEcCCc--eEE
Q 041916           84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTLPGHA----KTLDFSQKG--LLA  156 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~i----~~~~~s~~g--l~~  156 (359)
                      |.+||+.+++....+.+|.+.|.+++|+|||+.+|+.+.||+|++|..+.+. +++.-++++    ..+.|.-+|  +++
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence            9999999999999999999999999999999999999999999999999864 555555543    678888888  555


Q ss_pred             EEcC----CcEEEEcCCC
Q 041916          157 VGTG----SFVQILGDFS  170 (359)
Q Consensus       157 ~~~d----~~i~i~d~~~  170 (359)
                      .|.|    ..|.+||..+
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ecccccchhhhhhhhhhh
Confidence            5544    5788888543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-18  Score=154.55  Aligned_cols=193  Identities=15%  Similarity=0.209  Sum_probs=154.2

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT   83 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~   83 (359)
                      .++..|.+. +.++|.|....|++|+.||+|.+|++..        -+++.+|++|.++|.|++..+++..+++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            367778777 9999999999999999999999999932        2478899999999999999999999999999999


Q ss_pred             EEEEeCCCC----------cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee----------------
Q 041916           84 VTMWKPTTA----------APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL----------------  137 (359)
Q Consensus        84 v~lwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----------------  137 (359)
                      |+.|++...          .....+.+|.+.|+.+++|+....|++|+.||++++|+.....++                
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            999965411          123457799999999999998889999999999999987543220                


Q ss_pred             ----------------------------Eec-----c-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccce
Q 041916          138 ----------------------------QTL-----P-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSR  177 (359)
Q Consensus       138 ----------------------------~~~-----~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~  177 (359)
                                                  ..+     +     ..+.-+.++|.+  .+++..|+.|+++|..++ .++..
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s  526 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHS  526 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccchh
Confidence                                        000     0     123456677777  666778899999997666 67777


Q ss_pred             eecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       178 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      ...|..    .++++++.|+|.+|++|+.|+.+
T Consensus       527 ~~a~~~----svtslai~~ng~~l~s~s~d~sv  555 (577)
T KOG0642|consen  527 MVAHKD----SVTSLAIDPNGPYLMSGSHDGSV  555 (577)
T ss_pred             eeeccc----eecceeecCCCceEEeecCCcee
Confidence            777765    89999999999888876666533

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=1.2e-18  Score=150.83  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=159.9

Q ss_pred             eEEEeCCC-----cEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCC
Q 041916            2 PYIYNRDG-----TELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd~~g-----~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~   72 (359)
                      |-+||-.+     .-+..+..|..+ .+|.|+|. ...+++.|.||+|++-|+..+..  +.+.......+..+.|+.+.
T Consensus       212 VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~  291 (498)
T KOG4328|consen  212 VGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES  291 (498)
T ss_pred             EEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC
Confidence            67898322     125677888887 99999995 47888999999999999987643  33333355567888898888


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcc-eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCcee-----eEec--cCC
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAP-LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEV-----LQTL--PGH  143 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~-~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-----~~~~--~~~  143 (359)
                      ..++.|..=|...+||++++.. ...+.-|...|++|+++|. ..+|||+|.|++++|||+|....     +..+  ...
T Consensus       292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs  371 (498)
T KOG4328|consen  292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS  371 (498)
T ss_pred             ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence            8888888778999999998765 5566778889999999994 55699999999999999997432     3344  457


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCC---CCCCccceeecccCCCCcc--eEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDF---SGSHNYSRYMGHSMVKGYQ--IGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      |.+..|||+|  +++.+.|+.|+|||..   .. -+......|...++..  .....|.|+..++++|..-.-+.++...
T Consensus       372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             eeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence            8999999998  9999999999999962   12 1222233343323333  3446899999888887777666666544


Q ss_pred             CC
Q 041916          217 SG  218 (359)
Q Consensus       217 ~~  218 (359)
                      ++
T Consensus       451 ~~  452 (498)
T KOG4328|consen  451 GG  452 (498)
T ss_pred             CC
Confidence            33

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.80  E-value=2.9e-17  Score=143.89  Aligned_cols=206  Identities=14%  Similarity=0.132  Sum_probs=161.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---------------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---------------------------   51 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------------------   51 (359)
                      .|.||+ .+.........|.+- .+++...+|.+|- |+.|..|..||-.-.+                           
T Consensus       268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT  346 (626)
T KOG2106|consen  268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGT  346 (626)
T ss_pred             eEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEee
Confidence            478999 444445555588775 9999999997655 9999999999932000                           


Q ss_pred             -------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916           52 -------------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA  118 (359)
Q Consensus        52 -------------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  118 (359)
                                   ......+|......++.+|+..++++++.|+.+++|+  ..+++.+.. -..++.|+.|+|.| .+|
T Consensus       347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va  422 (626)
T KOG2106|consen  347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVA  422 (626)
T ss_pred             ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEE
Confidence                         0011346777888999999999999999999999999  445554433 35678999999999 999


Q ss_pred             EEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916          119 TSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF  194 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  194 (359)
                      .|+..|...+.|..+...+...  ..+++++.|+|+|  +++++.|+.|+||-+..++..+..+..+   ++++|+.+.|
T Consensus       423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~---~gs~ithLDw  499 (626)
T KOG2106|consen  423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC---SGSPITHLDW  499 (626)
T ss_pred             EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee---cCceeEEeee
Confidence            9999999999999986655444  6789999999999  6667789999999987776777777666   4479999999


Q ss_pred             eeCCCEEEEEcCCCeEEEEE
Q 041916          195 RPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       195 ~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++|+++|.+-+.|=.+-+|.
T Consensus       500 S~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  500 SSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             cCCCceEEeccCceEEEEEc
Confidence            99999998877776555553

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=9.4e-18  Score=155.25  Aligned_cols=210  Identities=18%  Similarity=0.173  Sum_probs=154.3

Q ss_pred             eEEEe--CCCcEEEEeccCCCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeE--EE----EEecCCCCeEEEEEcCCC
Q 041916            2 PYIYN--RDGTELHCLKEHGAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEI--VG----NFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd--~~g~~~~~l~~h~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~sp~~   72 (359)
                      ++||+  .....-..+.....++|+.|+|. ..+||.|..+|.|.+||+..+..  ..    ....|..+|+.+.|..+.
T Consensus       224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence            68999  34566677777777899999995 57888889999999999987654  22    223588899999997654


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCc---------------------------------------------------------
Q 041916           73 --GVVSLGHSGGTVTMWKPTTAA---------------------------------------------------------   93 (359)
Q Consensus        73 --~~l~sg~~dg~v~lwd~~~~~---------------------------------------------------------   93 (359)
                        .-+++++.||.|..|+++.-.                                                         
T Consensus       304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~  383 (555)
T KOG1587|consen  304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA  383 (555)
T ss_pred             CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence              449999999999999863210                                                         


Q ss_pred             ------ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEec---cCCceeEEEcCCc---eEEEEcC
Q 041916           94 ------PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTL---PGHAKTLDFSQKG---LLAVGTG  160 (359)
Q Consensus        94 ------~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~---~~~i~~~~~s~~g---l~~~~~d  160 (359)
                            ....+..|.++|+++.++|=+..++..+.|.+|++|... ...++..+   ...+++++|||..   ++++..+
T Consensus       384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~  463 (555)
T KOG1587|consen  384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD  463 (555)
T ss_pred             ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence                  011223467889999999976665555559999999988 66777777   3458999999988   5556678


Q ss_pred             CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      |.|.+||+....  ..+...+.. .....+.+.|++.|+.|++|...|.+.++.
T Consensus       464 G~l~iWDLl~~~--~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  464 GNLDIWDLLQDD--EEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             Cceehhhhhccc--cCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            999999986542  122222211 233678889999999999988888666655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1.8e-18  Score=152.49  Aligned_cols=190  Identities=16%  Similarity=0.199  Sum_probs=149.6

Q ss_pred             EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916            4 IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG   82 (359)
Q Consensus         4 iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg   82 (359)
                      |.+..|..-..+..|.+. .+-.|+|||.-|+|++.||.|++|. ++|....++.....+|.|++|.|+.+.++.+. .+
T Consensus        89 il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~  166 (737)
T KOG1524|consen   89 ILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG  166 (737)
T ss_pred             EecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence            334455556677889887 9999999999999999999999999 45765555656678999999999886555443 34


Q ss_pred             eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEEc
Q 041916           83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVGT  159 (359)
Q Consensus        83 ~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~~  159 (359)
                      .+.+=.+.....+..+.+|.+-|.++.|+|.++++++||.|-..++||... .++..-   ..+|++++|+|+.+++.++
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd~~~~v~S  245 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPEKDYLLWS  245 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccccceeeee
Confidence            576766666667788899999999999999999999999999999999864 333332   5689999999999666665


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      -+++++=.+.                .+.|..++|+|||..+++|+..|.+-+
T Consensus       246 ~nt~R~~~p~----------------~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  246 YNTARFSSPR----------------VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeecCCC----------------ccceEEEEEcCCCceeeccccCceEEE
Confidence            5666632221                227999999999999999999995433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.79  E-value=9.1e-18  Score=143.42  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=106.6

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--------C--------CeEEEEEecCCCCeEEEEEcCCCCE
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--------M--------GEIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      +..|..|... +++.|+|+|.+||||+.+|.|.+|-..        +        ......+.+|...|..++|+|++.+
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            4567788887 999999999999999999999999865        2        2244567789999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                      +++|+-|..+++||+..|.....+..|...|..++|.|-+.++++-+.|...+.+.+.
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            9999999999999999999999999999999999999999999998888766666553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.9e-17  Score=146.61  Aligned_cols=194  Identities=12%  Similarity=0.121  Sum_probs=153.1

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE-EEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI-VGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      ..+.+|+|+.+.+.||.+-.+|.|-||++..+=+ ...+.++ ...|.+++|++ +..|++.+.+|.|.-||+-++++..
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence            3459999999999999999999999999987643 3344444 45799999995 4567788899999999999999999


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDF  169 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~  169 (359)
                      .+....+.|++++.+|.+..++.||.||.+..++...+......     ++.+.+++|+|++  +++|+.||.|++||..
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence            99999999999999999999999999998888888777654433     5789999999999  7888899999999987


Q ss_pred             CCCCccce---eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          170 SGSHNYSR---YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       170 ~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+......   +.+-......-|+++.|-.++ .+++|.+.|.+.+|.
T Consensus       185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD  231 (691)
T ss_pred             CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence            76433311   111111022358888888654 678888888777754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=5.8e-18  Score=146.61  Aligned_cols=200  Identities=15%  Similarity=0.085  Sum_probs=154.3

Q ss_pred             EEEeccCCCe-EEEEEecCC--CEEEEEecCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916           12 LHCLKEHGAV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGE----IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT   83 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~   83 (359)
                      ...++-+.+. ++++|+|..  +++|+|+.-|.|-+||+.+.+    -+..+..|.++|.+|.|+|.+ ..+++.|.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            3445566776 999999975  588999999999999995322    355677899999999999965 68999999999


Q ss_pred             EEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE---eccCCceeEEEcCCc---e
Q 041916           84 VTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ---TLPGHAKTLDFSQKG---L  154 (359)
Q Consensus        84 v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---~~~~~i~~~~~s~~g---l  154 (359)
                      |++-|++....  +..+..-...+.++.|+.+...++.+..=|...+||+|+... ..   .....|.+++++|..   +
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99999987643  223322344567788888777777777777999999998653 22   224589999999987   8


Q ss_pred             EEEEcCCcEEEEcCCCCCCcc---ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          155 LAVGTGSFVQILGDFSGSHNY---SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +++|.|++.+|||++.-....   .....|.    -.|.++.|||.+..|++.+.|..+++|.+
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr----rsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHR----RSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceeccccc----ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            889999999999987642222   2233443    48999999999988999999988888876

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=2e-17  Score=153.29  Aligned_cols=202  Identities=14%  Similarity=0.175  Sum_probs=140.0

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |+|||.+|.....+..|... .+++|||||+.|+.++.+   ..|++||+.+++.  +..+.+   ....++|+|||+.|
T Consensus       186 i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~L  262 (429)
T PRK01742        186 VRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEE
Confidence            78899777767777787775 999999999999887653   4799999988753  333333   34578999999988


Q ss_pred             EEEe-CCCeEEEE--eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCc-eeeEeccCCceeEEEc
Q 041916           76 SLGH-SGGTVTMW--KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKY-EVLQTLPGHAKTLDFS  150 (359)
Q Consensus        76 ~sg~-~dg~v~lw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~i~~~~~s  150 (359)
                      +.++ .+|.+.||  |+.++. +..+..+...+.+++|+|||+.|+.++ .++...+|++... .....+...-.+++|+
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~S  341 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQIS  341 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCC
Confidence            8764 67865555  665554 455666777788999999999877655 5678888876532 2222222111567899


Q ss_pred             CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      |+|  +++++. ..+.+||+.++. .. .+... .    ...++.|+|+|++|++++.+|...+|..
T Consensus       342 pDG~~ia~~~~-~~i~~~Dl~~g~-~~-~lt~~-~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        342 ADGKTLVMING-DNVVKQDLTSGS-TE-VLSST-F----LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCCEEEEEcC-CCEEEEECCCCC-eE-EecCC-C----CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            999  444444 556779977663 22 22211 1    2456789999999999988887666553

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=5.1e-18  Score=152.39  Aligned_cols=211  Identities=11%  Similarity=0.105  Sum_probs=155.3

Q ss_pred             CeEEEe-CCCcEEEE--eccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe--------------------E---
Q 041916            1 YPYIYN-RDGTELHC--LKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE--------------------I---   52 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~--l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------------------~---   52 (359)
                      +++.|| .++.++..  +-+|.+. .+++|.|. ...|++|+.||.|.|||++-..                    +   
T Consensus       123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            578999 77777655  8899987 99999996 4788999999999999986321                    0   


Q ss_pred             ----EEEEecCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCcceE--------EEecc---CCCeEEEEEcCC
Q 041916           53 ----VGNFRTGLGRTDV---MRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLI--------KMLCH---QGPVSALAFHPN  113 (359)
Q Consensus        53 ----~~~~~~~~~~v~~---~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~--------~~~~h---~~~v~~i~~~~~  113 (359)
                          +.....+...|.+   +.+..|...||+++. |+.|+|||++......        .+..|   .-.+.++..+..
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence                0011123333433   445567788888877 9999999998654322        12223   235678888888


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc--eeeEeccCCc-----eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916          114 GHLMATSGKECKIKIWDLRKY--EVLQTLPGHA-----KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV  184 (359)
Q Consensus       114 ~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~i-----~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  184 (359)
                      |.+|++.+.|+.|++||+++.  .++..+.+..     ..-..+|++  +++++.|...++|.+.+.......+.+|.. 
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~-  361 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR-  361 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce-
Confidence            999888888999999999874  3455553321     223458888  888889999999998888778888899877 


Q ss_pred             CCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916          185 KGYQIGKVSFRPYED-VLGIGHSMGWSSILVP  215 (359)
Q Consensus       185 ~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~  215 (359)
                         .|++++|.|... -+++++.|-.+.+|..
T Consensus       362 ---eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  362 ---EVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             ---EEEEEeeccccCCCceeeccCcceEEEec
Confidence               899999988643 3566688888888876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.5e-19  Score=167.79  Aligned_cols=210  Identities=21%  Similarity=0.251  Sum_probs=161.8

Q ss_pred             eEEEe-CC---Cc---EEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC
Q 041916            2 PYIYN-RD---GT---ELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~---g~---~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp   70 (359)
                      |-+|| ..   +.   .+.++..|.+. ..+.|++.. ++||+|+.||.|.|||+..-+.-..+.  ...+.|.+++|+.
T Consensus        92 I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr  171 (1049)
T KOG0307|consen   92 IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR  171 (1049)
T ss_pred             eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccch
Confidence            56787 21   22   35667778886 999999974 699999999999999998654333331  2456799999987


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCC--CeEEEEEcCCCC-EEEEEeCCC---eEEEEEcCCc-eeeEec--
Q 041916           71 FN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG--PVSALAFHPNGH-LMATSGKEC---KIKIWDLRKY-EVLQTL--  140 (359)
Q Consensus        71 ~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~-~l~~~~~d~---~i~iwd~~~~-~~~~~~--  140 (359)
                      .- ..|++++.+|.+.|||++..+++..+..+.+  .+..++|+|+.. .|++++.|.   .|.+||+|.. .+++++  
T Consensus       172 kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~  251 (1049)
T KOG0307|consen  172 KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG  251 (1049)
T ss_pred             hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence            54 6789999999999999999988888875554  478999999754 477776654   6999999974 456666  


Q ss_pred             -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916          141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVP  215 (359)
Q Consensus       141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~  215 (359)
                       ...|.++.|++.+   +++++.|+.|.+|+..++ +.+..+....    ..+..+.|+|... .+++++-+|.+.|+--
T Consensus       252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             cccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCC----cceeeeeecCCCcchhhhheeccceeeeee
Confidence             4468999999977   888999999999998876 5666555543    3899999999876 7777788887777644


Q ss_pred             C
Q 041916          216 G  216 (359)
Q Consensus       216 ~  216 (359)
                      -
T Consensus       327 ~  327 (1049)
T KOG0307|consen  327 Q  327 (1049)
T ss_pred             e
Confidence            3

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.77  E-value=6.4e-16  Score=142.96  Aligned_cols=219  Identities=18%  Similarity=0.145  Sum_probs=170.6

Q ss_pred             eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCC-eE----EEEEecCCCCeEEEEEcCCC--C
Q 041916            2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMG-EI----VGNFRTGLGRTDVMRVNPFN--G   73 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~----~~~~~~~~~~v~~~~~sp~~--~   73 (359)
                      |++|-......+++..|.. +.-+  .|-|.+++++..++.|.||+..++ ..    +...+.....|+++. +|..  +
T Consensus        97 i~~~~rgk~i~~~~~~~~a~v~~l--~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLN  173 (910)
T KOG1539|consen   97 IYAYARGKHIRHTTLLHGAKVHLL--LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLN  173 (910)
T ss_pred             EEEEEccceEEEEeccccceEEEE--eeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhhee
Confidence            3444433345566667762 3222  234788999999999999999874 22    111222223377665 6765  5


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEc
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFS  150 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s  150 (359)
                      .++.|+.+|.+.+|++++++.+.+++++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+|   .+.|++++|.
T Consensus       174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFr  253 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFR  253 (910)
T ss_pred             eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEec
Confidence            7899999999999999999999999999999999999998789999999999999999999999998   3789999999


Q ss_pred             CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      .||   +++++..|.+.+||+............|.+    .|+.+.|.|....+++++.|...++|+..++||.-++...
T Consensus       254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~----sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~  329 (910)
T KOG1539|consen  254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG----SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS  329 (910)
T ss_pred             cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC----CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee
Confidence            999   445556699999998766333344445644    7999999999999999999999999998888887666544

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=1.3e-17  Score=136.72  Aligned_cols=197  Identities=18%  Similarity=0.319  Sum_probs=148.2

Q ss_pred             EEeccCCCe-EEEEEecC-CCEEEEEecC-------CeEEEEECCCC---------eEEEEEe-cCCCCeEEEEEcCCCC
Q 041916           13 HCLKEHGAV-LKLQFLRN-HFLLASINKF-------GQLRYQDVTMG---------EIVGNFR-TGLGRTDVMRVNPFNG   73 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~-~~~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~sp~~~   73 (359)
                      ..|..|.+- ..++-+|. ..+|+|+..+       ..+.||.+...         +++..+. .+.+.|.|+.|.|++.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            345556654 99999994 5677776542       24679988532         2344444 4557899999999998


Q ss_pred             EEEEEeCCCeEEEEeCCCCcc-eEEEe-----ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEec-cCC-
Q 041916           74 VVSLGHSGGTVTMWKPTTAAP-LIKML-----CHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTL-PGH-  143 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~-~~~~~-----~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-  143 (359)
                      .+++-. |..|.+|++..+.. +..+.     .|....++-+|+|  +|+.+++.+ |+++..||+|+.+....+ ..+ 
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg  214 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG  214 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence            888765 78899999987654 33332     3566788999999  788887765 789999999998877777 333 


Q ss_pred             --ceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916          144 --AKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVP  215 (359)
Q Consensus       144 --i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~  215 (359)
                        +..+.|+|+-   +++||.||.|+|||.+....++..+.+|..    .|+++.|+|..+ ++++|++|..+.++..
T Consensus       215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH----WvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH----WVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce----EEEEEEecCccceEEEecCCCceeEEEec
Confidence              8999999987   778889999999999888788888888876    999999999765 4556666665555443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=8.2e-18  Score=144.52  Aligned_cols=188  Identities=15%  Similarity=0.066  Sum_probs=142.7

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~-  100 (359)
                      .+++|+++|..|++|+.||++|||+..+...+.....|...|.++.|+|||..|++-+.| ..+||+++++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999987777777777888999999999999999999999 899999999977666542 


Q ss_pred             -cCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEEcCCcee-----eEec---cCCceeEEEcCCc-e-EEEEcCCcEE
Q 041916          101 -HQGPVSALAFHPNG---HL--MATSGKECKIKIWDLRKYEV-----LQTL---PGHAKTLDFSQKG-L-LAVGTGSFVQ  164 (359)
Q Consensus       101 -h~~~v~~i~~~~~~---~~--l~~~~~d~~i~iwd~~~~~~-----~~~~---~~~i~~~~~s~~g-l-~~~~~d~~i~  164 (359)
                       ..-....+.|+.|+   .+  ++....-+.|+.||+..+.-     ..+.   ...|++++.|++| + +.++.+|.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             22235567777766   33  33334456788887765432     1111   3479999999999 4 4566799999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      |++..+.......-..|..    .|+.+.|+|+.+++++-+.+....++.
T Consensus       307 i~~~~~lq~~~~vk~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEeceeeeeEeehhhhee----eeeeEEEcCCcCcccccccCCceeEEE
Confidence            9996655333334445544    899999999999999877776555543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.76  E-value=1.2e-17  Score=151.26  Aligned_cols=185  Identities=15%  Similarity=0.188  Sum_probs=143.6

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKF-----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVT   85 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~   85 (359)
                      ++.+-+|.-- ++++.+|+++++||++..     ..|++|+..+...+..+.+|.-.|+.|+|||||++|++.|.|.++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            4556678775 999999999999998764     5789999999888889999999999999999999999999999999


Q ss_pred             EEeCCCCc----ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEe-----ccCCceeEEEcCCc-
Q 041916           86 MWKPTTAA----PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQT-----LPGHAKTLDFSQKG-  153 (359)
Q Consensus        86 lwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~-----~~~~i~~~~~s~~g-  153 (359)
                      +|......    .......|..-|.+..|+|++.+++|+|.|.+|++|.....  +.+..     +...++.++|.|-- 
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence            99864321    12336689999999999999999999999999999998776  43333     25678999987732 


Q ss_pred             -----eEEEE-cCCcEEEEcCCCCCCc-------c-ceeecccCCCCcceEEEEEeeC
Q 041916          154 -----LLAVG-TGSFVQILGDFSGSHN-------Y-SRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       154 -----l~~~~-~d~~i~i~d~~~~~~~-------~-~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                           ++++| ..|.|.+|......+.       . .....+. .+...|+.+.|.|.
T Consensus       678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI-GPDSAVNRLLWRPT  734 (764)
T ss_pred             ccccceEEEEecccEEEEEecccccccccceeeeecccccccc-ChHHhhheeEeccc
Confidence                 56666 5699999984311110       0 1111121 24558999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=144.40  Aligned_cols=203  Identities=16%  Similarity=0.219  Sum_probs=155.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----------EEe------------
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----------NFR------------   57 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~------------   57 (359)
                      ++||| ++|..+.++++|.+. +|++|+.||..+|||+.|..|.+|+..-...+.          +|.            
T Consensus        35 lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs  114 (1081)
T KOG1538|consen   35 LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS  114 (1081)
T ss_pred             EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh
Confidence            68999 999999999999997 999999999999999999999999965321111          000            


Q ss_pred             -------------c--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCC-----
Q 041916           58 -------------T--GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNG-----  114 (359)
Q Consensus        58 -------------~--~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~-----  114 (359)
                                   .  ....|.+++|..||++++.|..||+|.+-+- ++++...+.   +..++|.+|+|+|..     
T Consensus       115 dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~  193 (1081)
T KOG1538|consen  115 DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN  193 (1081)
T ss_pred             hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence                         0  1235678889999999999999999999863 455544454   467899999999943     


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcce
Q 041916          115 HLMATSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI  189 (359)
Q Consensus       115 ~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  189 (359)
                      ..+++.....++.+|.+.. +.+.   .+.-...|+++-|+|  ++.+|.|+.+.+|. +.+ -.+.+....    +..|
T Consensus       194 di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G-vrLGTvg~~----D~WI  266 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG-VRLGTVGEQ----DSWI  266 (1081)
T ss_pred             ceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC-eEEeecccc----ceeE
Confidence            4677888888888887764 3322   234467899999999  78889999999996 444 333333332    3489


Q ss_pred             EEEEEeeCCCEEEEEcCCCeEEE
Q 041916          190 GKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       190 ~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      ++++..|++++++.|..||++--
T Consensus       267 WtV~~~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             EEEEEccCCceEEEEEccCeeeh
Confidence            99999999999999999996544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=4.5e-17  Score=135.49  Aligned_cols=188  Identities=14%  Similarity=0.198  Sum_probs=147.6

Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeEEEEEec--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcc--eEEEe
Q 041916           28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRT--GLG---RTDVMRVNPFNGVVSLGHSGGTVTMWKP-TTAAP--LIKML   99 (359)
Q Consensus        28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~sp~~~~l~sg~~dg~v~lwd~-~~~~~--~~~~~   99 (359)
                      |+..++|+.+.+.-|.+||.-+|+...++.+  |..   ...+++|+|||.+|++| ....|++||+ +.|.-  +....
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            6778999999999999999999998888774  332   45789999999999876 5668999998 45432  22211


Q ss_pred             -----ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEc-CCcEEEEc
Q 041916          100 -----CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGT-GSFVQILG  167 (359)
Q Consensus       100 -----~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~-d~~i~i~d  167 (359)
                           +..+-|.+++|+| +...++.++....+-||.-....++..+   .+.|+.++|.++|  +++++. +..|.+||
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD  279 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence                 3367899999999 5668999999999999988888888877   5689999999999  777774 68999999


Q ss_pred             CCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          168 DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ++....++..+..|.......| -+...|++++|++|+.+|.+++|..-.
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCC
Confidence            9988778888877754222222 245568899999988888888877544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=6.2e-17  Score=132.81  Aligned_cols=195  Identities=17%  Similarity=0.244  Sum_probs=147.0

Q ss_pred             cCCCe-EEEEEecCC-----CEEEEEecCCeEEEEECCC--CeE--EEEE-----ecCCCCeEEEEEcC-CCCEEEEEeC
Q 041916           17 EHGAV-LKLQFLRNH-----FLLASINKFGQLRYQDVTM--GEI--VGNF-----RTGLGRTDVMRVNP-FNGVVSLGHS   80 (359)
Q Consensus        17 ~h~~~-~~l~~s~~~-----~~l~s~~~dg~i~iwd~~~--~~~--~~~~-----~~~~~~v~~~~~sp-~~~~l~sg~~   80 (359)
                      .|.-+ +.+-|.|+.     .+|||++ | .+++|.+..  ++.  ...+     ..+..+++++.|+. +-++|.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            45555 999999975     4677654 3 799999974  221  1111     13557899999987 4589999999


Q ss_pred             CCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---c---CCceeEEEc
Q 041916           81 GGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---P---GHAKTLDFS  150 (359)
Q Consensus        81 dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~---~~i~~~~~s  150 (359)
                      |-+..|||+.++..   ...+-+|...|..|+|...+ ..||++|.||+|++||+|....-..+   +   .+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            99999999998743   44567999999999999855 46899999999999999986543333   2   356889999


Q ss_pred             CCc---eEEEEcC-CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccccc
Q 041916          151 QKG---LLAVGTG-SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWV  226 (359)
Q Consensus       151 ~~g---l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~  226 (359)
                      +..   +++...| ..|.|.|++....++..+.+|..    .|+.++|.|...           +.+.++++|...-+|+
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a----~VNgIaWaPhS~-----------~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA----SVNGIAWAPHSS-----------SHICTAGDDCQALIWD  316 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc----cccceEecCCCC-----------ceeeecCCcceEEEEe
Confidence            887   4555554 68999999888788888888876    999999999865           3344555666666676


Q ss_pred             CC
Q 041916          227 AN  228 (359)
Q Consensus       227 ~~  228 (359)
                      ++
T Consensus       317 l~  318 (364)
T KOG0290|consen  317 LQ  318 (364)
T ss_pred             cc
Confidence            64

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=2.7e-16  Score=130.76  Aligned_cols=205  Identities=10%  Similarity=0.102  Sum_probs=159.6

Q ss_pred             eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           15 LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        15 l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      +..-..+ +|.+|++|+..+|++-.+..|.||.....   +..+++..|...|++++|+|..+.|++++.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3333445 99999999999999999999999998754   4678899999999999999999999999999999999984


Q ss_pred             CC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee------e-EeccCCceeEEEcCCc--eEEEE
Q 041916           91 TA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV------L-QTLPGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus        91 ~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~-~~~~~~i~~~~~s~~g--l~~~~  158 (359)
                      .+   ++...+..+...+++|.|+|.++.||+||.-..|.+|-+....-      + ..+...|++++|+|++  +.+++
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            33   46666778899999999999999999999999999998765321      1 1225678999999999  55677


Q ss_pred             cCCcEEEEcCCC-----C--------CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          159 TGSFVQILGDFS-----G--------SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       159 ~d~~i~i~d~~~-----~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      .|+.++||...-     .        ..+...++..-...++.+..+.|+|+|..|+-.+.|+.+.+....+..
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            899999986321     0        001111111110145589999999999999999999988887765543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=2.6e-17  Score=140.15  Aligned_cols=147  Identities=21%  Similarity=0.398  Sum_probs=124.1

Q ss_pred             EEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------cceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCe
Q 041916           55 NFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTA-------APLIKMLCHQGPVSALAFHPN-GHLMATSGKECK  125 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~  125 (359)
                      .+.+|.++|..++|+|-+ ..||+||.|.+|.||.+..+       +++..+.+|...|.-++|+|. .+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            356899999999999955 78999999999999997643       467888999999999999994 567999999999


Q ss_pred             EEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          126 IKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       126 i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      |.+||+.+++.+.++  +.-|.+++|+-+|  +++++.|..|+|||.+++ ..+..-.+|   .+..-..+.|-.+|.++
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~h---eG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAH---EGAKPARAIFLASGKIF  231 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccc---cCCCcceeEEeccCcee
Confidence            999999999988777  5568999999999  788889999999998887 555555777   44567788899999865


Q ss_pred             EEEc
Q 041916          202 GIGH  205 (359)
Q Consensus       202 ~~~~  205 (359)
                      .+|-
T Consensus       232 tTGf  235 (472)
T KOG0303|consen  232 TTGF  235 (472)
T ss_pred             eecc
Confidence            5543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.7e-17  Score=144.02  Aligned_cols=203  Identities=19%  Similarity=0.186  Sum_probs=153.2

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPF--NGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~--~~~l~sg~~dg~v~lwd   88 (359)
                      ..|.+|.+. +|++|+.+|.+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|.  +.++++|..|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            567899998 999999999999999999999999999888888876 69999999999994  47899999999999999


Q ss_pred             CCC----------CcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceee-------Eec---c---CCc
Q 041916           89 PTT----------AAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVL-------QTL---P---GHA  144 (359)
Q Consensus        89 ~~~----------~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-------~~~---~---~~i  144 (359)
                      +..          ..+...+.+|...|..|+..|++ +.+.+++.||+|+-||+|.....       ..+   .   -..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            984          23455677899999999999988 78999999999999999974211       111   1   134


Q ss_pred             eeEEEcCCc---eEEEEcCCcEEEEcCCCCCC-----------------cccee-ecccCCCC-------cceEEEEEee
Q 041916          145 KTLDFSQKG---LLAVGTGSFVQILGDFSGSH-----------------NYSRY-MGHSMVKG-------YQIGKVSFRP  196 (359)
Q Consensus       145 ~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~-----------------~~~~~-~~~~~~~~-------~~v~~~~~~p  196 (359)
                      .++.++|..   +++++.|...++||.+...+                 ++.-+ .+|-....       ..++-+.|+|
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp  283 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP  283 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence            789999988   66677889999999332100                 01111 12211000       0156678999


Q ss_pred             CCCEEEEEcCCCeEEEEEc
Q 041916          197 YEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       197 ~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|.-|++.-....+.++..
T Consensus       284 NGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  284 NGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             CCcEEEEeeCCeEEEEEee
Confidence            9988777666655555543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=3.2e-15  Score=137.24  Aligned_cols=209  Identities=25%  Similarity=0.448  Sum_probs=164.1

Q ss_pred             CeEEEe-CCCc-EEEEeccCC--CeEEEEE-ecCCC-EEEEEec-CCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC
Q 041916            1 YPYIYN-RDGT-ELHCLKEHG--AVLKLQF-LRNHF-LLASINK-FGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd-~~g~-~~~~l~~h~--~~~~l~~-s~~~~-~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      .+.+|+ ..+. .+..+..+.  ....+.+ ++++. +++..+. |+.+.+||... ......+..|...|.+++|+|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  167 (466)
T COG2319          88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG  167 (466)
T ss_pred             cEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC
Confidence            367899 4454 677777744  3455555 78777 5555444 99999999998 78888999999999999999999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeE-eccCCcee-E-
Q 041916           73 GVVSLGHS-GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQ-TLPGHAKT-L-  147 (359)
Q Consensus        73 ~~l~sg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~i~~-~-  147 (359)
                      ..+++++. |+.+.+|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+..+. .+.++... + 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  247 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS  247 (466)
T ss_pred             CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeE
Confidence            98888885 99999999998888888889999999999999998 55555899999999999777777 45433222 2 


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .|+|++  +++++.++.+++|+..........+..|    ...+.++.|.|++..+++++.|+.+.+|
T Consensus       248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~~~~~  311 (466)
T COG2319         248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH----SSSVLSVAFSPDGKLLASGSSDGTVRLW  311 (466)
T ss_pred             eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC----CccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            799998  5567889999999977654423333344    3489999999988888888877766666

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=3.9e-18  Score=157.38  Aligned_cols=200  Identities=18%  Similarity=0.291  Sum_probs=160.9

Q ss_pred             EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916           14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~   92 (359)
                      .|.+|... .|..|...|.++++|++|..++||.+.++.++..+.+|.+.++.++.+.++.+++++|.|..|++|-+.++
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            35578776 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--------------eee---------------------
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--------------EVL---------------------  137 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--------------~~~---------------------  137 (359)
                      .++..+.+|.+.|++|+|+|-.    +.+.||++++||.+-.              ..+                     
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            9999999999999999999954    7788999999998600              000                     


Q ss_pred             --Ee------------c-------------------------------------cCCceeEEEcCCc---eEEEEcCCcE
Q 041916          138 --QT------------L-------------------------------------PGHAKTLDFSQKG---LLAVGTGSFV  163 (359)
Q Consensus       138 --~~------------~-------------------------------------~~~i~~~~~s~~g---l~~~~~d~~i  163 (359)
                        +.            |                                     ...+..+.++|-.   .++++.||..
T Consensus       341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence              00            0                                     0012334455544   4567889999


Q ss_pred             EEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccc
Q 041916          164 QILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFD  223 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~  223 (359)
                      .|||+..+ .++..+. +|.     .+....|+++|..++....-|...|+-+|.++...+
T Consensus       421 ~iwdi~eg-~pik~y~~gh~-----kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~  475 (1113)
T KOG0644|consen  421 IIWDIWEG-IPIKHYFIGHG-----KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK  475 (1113)
T ss_pred             EeeecccC-Ccceeeecccc-----eeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence            99997666 4444443 332     688889999999999988889888887777665443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.4e-16  Score=133.55  Aligned_cols=176  Identities=18%  Similarity=0.277  Sum_probs=134.6

Q ss_pred             CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcceE--EEeccC-CCe
Q 041916           31 FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKPTTAAPLI--KMLCHQ-GPV  105 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~~~~~~~~--~~~~h~-~~v  105 (359)
                      ..+|++-.+|+|++||..+|+.+..|+++...++.++|..  ....+.+|+.||+|++||+++.....  .+..++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4588888899999999999999999999999999999977  45789999999999999999765433  344555 456


Q ss_pred             EEEEEcCCCCEEEEEe----CCCeEEEEEcCCcee-eEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCC
Q 041916          106 SALAFHPNGHLMATSG----KECKIKIWDLRKYEV-LQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSH  173 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~  173 (359)
                      .+++.+-.++.+++|+    .|-.|.+||+|..+. +..+    ...|+++.|+|..   +++++.||.|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            6777766778888876    367899999999765 6666    4579999999987   88899999999999654421


Q ss_pred             ccceeecccCCCCcceEEEEEeeCC--CEEEEEcCCC
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYE--DVLGIGHSMG  208 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg  208 (359)
                      . ..+ -|...+++.|.++.|...+  +++...+..+
T Consensus       201 e-DaL-~~viN~~sSI~~igw~~~~ykrI~clTH~Et  235 (376)
T KOG1188|consen  201 E-DAL-LHVINHGSSIHLIGWLSKKYKRIMCLTHMET  235 (376)
T ss_pred             h-hhH-HHhhcccceeeeeeeecCCcceEEEEEccCc
Confidence            1 111 1111245589999999888  5554444443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=4.4e-17  Score=139.25  Aligned_cols=189  Identities=17%  Similarity=0.268  Sum_probs=141.2

Q ss_pred             cCCCeEEEEEecCCC-EEEEEecCCeEEEEECCCCe---------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           17 EHGAVLKLQFLRNHF-LLASINKFGQLRYQDVTMGE---------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        17 ~h~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      .|..+.++.|.++.. .|+||+.|..|++|-+..+.         .+..+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            555569999998765 99999999999999986432         34567789999999999999999999999999999


Q ss_pred             EeCC--------C--------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916           87 WKPT--------T--------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL  147 (359)
Q Consensus        87 wd~~--------~--------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  147 (359)
                      |-..        +        ......+.+|...|..++|+|++.++++++.|.++++||+..|.....+   ...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9755        2        1112345689999999999999999999999999999999999998888   3468999


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCc--cc--e--------------eecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHN--YS--R--------------YMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~--~~--~--------------~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      +|.|-+  +.+-+.|...+++++......  ..  .              -.-|...-..-...++|+|+|.+|++..
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence            999987  555666665555553221100  00  0              0111110112356689999999888743

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.4e-17  Score=144.89  Aligned_cols=188  Identities=18%  Similarity=0.276  Sum_probs=148.4

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--   99 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--   99 (359)
                      ..|+++.-..-|+.++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|.|..||+++...+.++.  
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence            445554333334445556689999999999999999888999999999999999999999999999999877666654  


Q ss_pred             ----ccCCC-----eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---eEEEEcCCcE
Q 041916          100 ----CHQGP-----VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---LLAVGTGSFV  163 (359)
Q Consensus       100 ----~h~~~-----v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i  163 (359)
                          .|++.     |+++.|+.+|-.+++|+.+|.|.|||+|+.+++..-    .-+|..+.|.+.+   .++......+
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~  296 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL  296 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence                34443     999999999999999999999999999999887655    4578999998874   4444555799


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|||-.++ .....+..     ...++.+|+-|++.+++++..++-+..++.
T Consensus       297 kiWd~~~G-k~~asiEp-----t~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  297 KIWDECTG-KPMASIEP-----TSDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             hhcccccC-Cceeeccc-----cCCcCceeeecCCceEEEecCCCcceeEEc
Confidence            99997776 44433332     227999999999999999988876555543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=5e-16  Score=127.58  Aligned_cols=189  Identities=12%  Similarity=0.119  Sum_probs=144.8

Q ss_pred             CCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 041916           18 HGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTT   91 (359)
Q Consensus        18 h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~   91 (359)
                      +..+ ++..|+. +.+++.++|-|.+..|||+.+|.   ....+-.|...|..++|...+ ..+|+.+.||.|++||++.
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            3445 8889986 67899999999999999999873   356777899999999999866 6899999999999999998


Q ss_pred             CcceEEEec---cCCCeEEEEEcC-CCCEEEEEeCC-CeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEc
Q 041916           92 AAPLIKMLC---HQGPVSALAFHP-NGHLMATSGKE-CKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGT  159 (359)
Q Consensus        92 ~~~~~~~~~---h~~~v~~i~~~~-~~~~l~~~~~d-~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~  159 (359)
                      ...-..+..   ...+...++|++ |.++||+-..| ..|.+.|+|.. .++..+   .+.|+.++|.|..   ++++|.
T Consensus       229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD  308 (364)
T KOG0290|consen  229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD  308 (364)
T ss_pred             cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence            765444432   245678899998 67788887665 47999999974 456666   5689999999987   889999


Q ss_pred             CCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEee-CCCEEEEEcCCC
Q 041916          160 GSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMG  208 (359)
Q Consensus       160 d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg  208 (359)
                      |....+||+.....  ...++....  .++.|+.+.|+| ..++++++....
T Consensus       309 D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  309 DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEecCe
Confidence            99999999865422  122222222  234799999995 467777765543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=5.9e-15  Score=135.53  Aligned_cols=208  Identities=25%  Similarity=0.405  Sum_probs=161.7

Q ss_pred             CeEEEe-CC-CcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916            1 YPYIYN-RD-GTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV   75 (359)
Q Consensus         1 ~v~iwd-~~-g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l   75 (359)
                      .+.+|+ .. +.....+..|... .+++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence            368899 44 5788889999886 99999999998888885 99999999999889999999999999999999998 56


Q ss_pred             EEEeCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eEec---cCCceeEEEc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQTL---PGHAKTLDFS  150 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~---~~~i~~~~~s  150 (359)
                      ++++.|+.|.+||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++||++.... +..+   ...+.++.|+
T Consensus       215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence            666999999999988777777 678888875 448999998999999999999999987554 3333   4578999999


Q ss_pred             CCc--eEEEEcCCcEEEEcCCCCCCccceee--cccCCCCcceEEEEEeeCCCEEEEE-cCCCeEEEEE
Q 041916          151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYM--GHSMVKGYQIGKVSFRPYEDVLGIG-HSMGWSSILV  214 (359)
Q Consensus       151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~~~i~~  214 (359)
                      |++  +++++.|+.+.+|+.... .......  .|..    .+..+.|.+++..++.+ ..++.+.+|.
T Consensus       294 ~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         294 PDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEG----PVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             CCCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCC----ceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            966  666777888999986555 3333332  4432    68889883332455444 4555444433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.3e-15  Score=139.30  Aligned_cols=200  Identities=10%  Similarity=0.090  Sum_probs=136.2

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++||.+|.....+..+... .+.+|||||+.|+..+.   +..|.+||+.+|+... +....+.+..++|+|||..|+.
T Consensus       181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~  259 (429)
T PRK03629        181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAF  259 (429)
T ss_pred             EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEE
Confidence            67888667665666666655 99999999998886542   4579999998886432 2223344557899999998775


Q ss_pred             E-eCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec--cCCceeEEE
Q 041916           78 G-HSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        78 g-~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      . +.+|  .|.+||+.++... .+..+...+....|+|||+.|+.++.+ +  .|.++|+.++......  ........|
T Consensus       260 ~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~  338 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  338 (429)
T ss_pred             EEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence            4 4455  5889999887654 344445567889999999998877754 3  4556677766443222  334567999


Q ss_pred             cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      +|+|  ++.++.+   ..|.+||+.++.  ...+... .    ...+..|+|||++|+.++.++..
T Consensus       339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~----~~~~p~~SpDG~~i~~~s~~~~~  397 (429)
T PRK03629        339 SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-F----LDETPSIAPNGTMVIYSSSQGMG  397 (429)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-C----CCCCceECCCCCEEEEEEcCCCc
Confidence            9999  4444432   368889976652  2222221 1    24467899999999998887643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=9.5e-17  Score=133.82  Aligned_cols=167  Identities=17%  Similarity=0.220  Sum_probs=133.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l   75 (359)
                      |+|.| .+++....+.+|... +.+.|.|+. ++|+++|.|.+|++||+++..++..|-   +|.+.|.++.|+++|.+|
T Consensus       117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i  196 (385)
T KOG1034|consen  117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI  196 (385)
T ss_pred             EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence            78888 888888999999997 999999974 899999999999999999999988775   699999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcc-------------------------eE---EEeccCCC-----------------------
Q 041916           76 SLGHSGGTVTMWKPTTAAP-------------------------LI---KMLCHQGP-----------------------  104 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~-------------------------~~---~~~~h~~~-----------------------  104 (359)
                      ++++.|.++.+|+++..+.                         +.   +-.-|..+                       
T Consensus       197 ~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w  276 (385)
T KOG1034|consen  197 ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCW  276 (385)
T ss_pred             eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEE
Confidence            9999999999999862110                         00   00112111                       


Q ss_pred             -------------------------------eEE--EEEcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-----cCCc
Q 041916          105 -------------------------------VSA--LAFHPNGHLMATSGKECKIKIWDLRKYEVL--QTL-----PGHA  144 (359)
Q Consensus       105 -------------------------------v~~--i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-----~~~i  144 (359)
                                                     |+-  .+|+|-+++||.|.+.|.|.+||++...+.  .++     ...|
T Consensus       277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tV  356 (385)
T KOG1034|consen  277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTV  356 (385)
T ss_pred             ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccccee
Confidence                                           122  344566778999999999999999986652  122     3468


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      ...+||.+|  ++.++.|++|.-||.
T Consensus       357 RQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  357 RQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999999999  778889999999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.7e-15  Score=140.23  Aligned_cols=198  Identities=13%  Similarity=0.099  Sum_probs=133.9

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-   76 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-   76 (359)
                      |++||.+|.....+..+... .+.+|+|||+.|+..+.+   ..|.+||+.+|+... +....+.+.+.+|+|||+.|+ 
T Consensus       178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~  256 (427)
T PRK02889        178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAV  256 (427)
T ss_pred             EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence            56777777766666666665 899999999988877642   469999999887543 333445667899999998776 


Q ss_pred             EEeCCCeEEEEe--CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--EcCCceeeE-ecc-CCceeEEE
Q 041916           77 LGHSGGTVTMWK--PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIW--DLRKYEVLQ-TLP-GHAKTLDF  149 (359)
Q Consensus        77 sg~~dg~v~lwd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iw--d~~~~~~~~-~~~-~~i~~~~~  149 (359)
                      +.+.+|...||.  +..+. ...+..+.+.+.+..|+|||+.|+.++. ++...+|  |+.++.... .+. ......+|
T Consensus       257 ~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        257 ALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             EEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence            567788766665  44443 4555556666678899999999887664 4555555  444444322 222 23456899


Q ss_pred             cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ||+|  ++.++.++   .|.+||+.++. . ..+... .    ....+.|+|+|+.|+.++.++
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~-~~lt~~-~----~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQ-V-TALTDT-T----RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCC-e-EEccCC-C----CccCceECCCCCEEEEEEecC
Confidence            9999  44444332   69999976652 2 222222 1    346789999999988877655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.6e-15  Score=139.57  Aligned_cols=197  Identities=13%  Similarity=0.133  Sum_probs=140.2

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-   76 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-   76 (359)
                      |++||.+|.....+..|... .+.+|+|||+.|+..+.   +..|.+||+.+|.. ..+..+.+.+...+|+|||..|+ 
T Consensus       184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~  262 (435)
T PRK05137        184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVM  262 (435)
T ss_pred             EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEE
Confidence            67888777777777777765 99999999998887753   46899999988865 34555666778899999998765 


Q ss_pred             EEeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEec--cCCceeEEE
Q 041916           77 LGHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        77 sg~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      +.+.+|.  |.+||+.++.. ..+..+.+.....+|+|||+.|+.++. +  ..|++||+.++......  .+.+..+.|
T Consensus       263 ~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~  341 (435)
T PRK05137        263 SLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW  341 (435)
T ss_pred             EEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence            5555555  77788887654 445556666788999999999887764 3  36888898776543322  445677899


Q ss_pred             cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      +|+|  ++..+.+   ..|.+||+..+ . ...+ ....    .+..+.|+|||+.|+..+.+
T Consensus       342 SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~l-t~~~----~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        342 SPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERIL-TSGF----LVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEECCCC-c-eEec-cCCC----CCCCCeECCCCCEEEEEEcc
Confidence            9999  4444432   36888886443 2 2222 1211    46778999999988776553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=2.4e-15  Score=139.68  Aligned_cols=197  Identities=12%  Similarity=0.064  Sum_probs=136.6

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-   76 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-   76 (359)
                      |++||.+|.....+..+... .+.+|+|||+.|+.++.   ...|.+||+.+++.. .+....+...+++|+|+|+.|+ 
T Consensus       186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~  264 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLAL  264 (433)
T ss_pred             EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEE
Confidence            67899777766667766665 89999999999888764   347999999887653 3333445556889999998765 


Q ss_pred             EEeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEe-cc-CCceeEEE
Q 041916           77 LGHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQT-LP-GHAKTLDF  149 (359)
Q Consensus        77 sg~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~-~~-~~i~~~~~  149 (359)
                      +.+.+|  .|++||+.++.. ..+..+......++|+|||++|+.++. ++  .|+++|+.++..... +. .....++|
T Consensus       265 ~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~  343 (433)
T PRK04922        265 TLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASV  343 (433)
T ss_pred             EEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence            445555  599999987764 445556556678999999999887764 34  477778777654332 22 34557899


Q ss_pred             cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      ||+|  ++..+.+   ..|.+||+.++ ... .+. +..    ....+.|+|+|++|+..+.+
T Consensus       344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~----~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        344 SPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGS----LDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCC----CCCCceECCCCCEEEEEEec
Confidence            9999  4333332   26999997665 222 222 211    34567899999988776654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.9e-16  Score=129.71  Aligned_cols=165  Identities=13%  Similarity=0.168  Sum_probs=133.6

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC---CCe-----EEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT---MGE-----IVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~-----~~~~~~~~~~~v~~~~~sp~   71 (359)
                      .|.||+..|+.+..+...... +..+.||+|+++++++..-.|++|.+-   .|.     .+.++++|...|+.++||++
T Consensus       210 ~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  210 KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             cEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            478999669999988877766 888999999999999999999999973   232     35678899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-------cceEEE----e-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           72 NGVVSLGHSGGTVTMWKPTTA-------APLIKM----L-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~-------~~~~~~----~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      ...+++.|.||++++||++-.       ..+...    . +...++ .++.+|.|..||.+.. ..+.+|..++++....
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG-SDLKVFASEDGKDYPE  367 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC-CceEEEEcccCccchh
Confidence            999999999999999997521       122221    1 112334 7999999999887654 5799999999877666


Q ss_pred             c----cCCceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916          140 L----PGHAKTLDFSQKG-LLAVGTGSFVQILG  167 (359)
Q Consensus       140 ~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d  167 (359)
                      +    .+.|++++|+++| +++.+.|..++++.
T Consensus       368 ~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  368 LEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             HHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            6    5679999999999 77777899999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.71  E-value=1.1e-15  Score=138.27  Aligned_cols=187  Identities=12%  Similarity=0.122  Sum_probs=139.2

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA------   93 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~------   93 (359)
                      .+..++|-|||..|+.+. +..+.+||+..|..+.++++|...|.|++|+.||..+++|+.|..|.+|+..-..      
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            458899999998777765 4489999999999999999999999999999999999999999999999854211      


Q ss_pred             --ceEEEe---------------------------cc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916           94 --PLIKML---------------------------CH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--  140 (359)
Q Consensus        94 --~~~~~~---------------------------~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  140 (359)
                        .++.+.                           .|  ...|.+.+|..||.+++.|-.||+|.+-+-. +++...+  
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~R  171 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIER  171 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeC
Confidence              111100                           01  2346778888889999999999999887543 3332222  


Q ss_pred             ----cCCceeEEEcCCc-------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          141 ----PGHAKTLDFSQKG-------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       141 ----~~~i~~~~~s~~g-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                          ..+|.+++|+|..       +.++..+.++.+|.+ ++ ..+..-..-    +....++.+.|+|.++..|+.|+.
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG-~~Igk~r~L----~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SG-KQIGKDRAL----NFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cc-eeecccccC----CCCchhheeccCCcEEEEccCCCc
Confidence                3478999999864       555667888999975 33 222222222    125678999999999999999998


Q ss_pred             EEEEE
Q 041916          210 SSILV  214 (359)
Q Consensus       210 ~~i~~  214 (359)
                      .+++.
T Consensus       246 L~~fT  250 (1081)
T KOG1538|consen  246 LSLFT  250 (1081)
T ss_pred             eEEEe
Confidence            77763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=7e-16  Score=126.63  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=139.1

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE-EEEEe-----cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 041916           18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI-VGNFR-----TGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~   89 (359)
                      +..+.|+.|.|++..|++-. |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+++. .|+++..||+
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~  200 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDL  200 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEc
Confidence            44569999999999998876 78999999987765 33333     2445677889999  56676654 6789999999


Q ss_pred             CCCcceEEEe-ccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCc-eeeEeccC---CceeEEEcCCc---eEEEEcC
Q 041916           90 TTAAPLIKML-CHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKY-EVLQTLPG---HAKTLDFSQKG---LLAVGTG  160 (359)
Q Consensus        90 ~~~~~~~~~~-~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s~~g---l~~~~~d  160 (359)
                      ++......+. +|-..|+++.|+|+-. +|++|+.||.|++||+|+- .++.++++   .+.++.|+|..   ++++|+|
T Consensus       201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            9887776665 7888899999999755 4899999999999999974 57788754   47999999966   8889999


Q ss_pred             CcEEEEcCCCCC----------------------------CccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCC
Q 041916          161 SFVQILGDFSGS----------------------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMG  208 (359)
Q Consensus       161 ~~i~i~d~~~~~----------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg  208 (359)
                      ..|.+|....-.                            ..+..|..|..    .|++++|+.-..++ ++-+.||
T Consensus       281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED----SVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED----SVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc----ceEEEeeccCCCeeEEEeccCc
Confidence            999998643210                            12234445543    89999999877754 3333444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.70  E-value=2.2e-16  Score=142.00  Aligned_cols=179  Identities=15%  Similarity=0.242  Sum_probs=138.8

Q ss_pred             EecCCCEEEE--EecCCeEEEEECCCC-eE----EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-----
Q 041916           26 FLRNHFLLAS--INKFGQLRYQDVTMG-EI----VGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTA-----   92 (359)
Q Consensus        26 ~s~~~~~l~s--~~~dg~i~iwd~~~~-~~----~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~-----   92 (359)
                      |+.+...+|+  ++..|.|-||+++.. +.    +-.+. ....|+.+.|.| |...|++++.||.|.+|.+..+     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            4444444443  455789999999753 21    22222 235799999999 5578999999999999997643     


Q ss_pred             --cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916           93 --APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        93 --~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                        .+...+.+|...|+++.|+| -...|++++.|-+|++||+++++....+   .+.|.+++|||+|  +++++.||+|+
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence              45667789999999999999 5678999999999999999998776666   5679999999999  88899999999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +|..+....++..-.+.   -+..-..+.|.-+|+++++.+.|.
T Consensus       746 Vy~Prs~e~pv~Eg~gp---vgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGP---VGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             EeCCCCCCCccccCCCC---ccCcceeEEEEecCcEEEEecccc
Confidence            99988776655544333   233556788999999998887775

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=3.3e-15  Score=126.55  Aligned_cols=165  Identities=19%  Similarity=0.268  Sum_probs=126.8

Q ss_pred             EEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEE
Q 041916            3 YIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG---LGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~sg   78 (359)
                      ++++ ..+..++.+.-...+.++.++.  +.|+++-.+ .|+|||+.+.+.++++..-   ...+.++.+++.+.+++.-
T Consensus        71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp  147 (391)
T KOG2110|consen   71 KVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP  147 (391)
T ss_pred             EEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence            4455 4455555555555556666643  456666544 5999999999999888754   2335555555556687763


Q ss_pred             --eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEecc-----CCceeEEEc
Q 041916           79 --HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQTLP-----GHAKTLDFS  150 (359)
Q Consensus        79 --~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-----~~i~~~~~s  150 (359)
                        ...|.|.|||+.+-+++..+.+|.+++-+++|+++|.+|||+|..|+ |++|.+.+|+.+.+|.     ..|.+++|+
T Consensus       148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence              35689999999999999999999999999999999999999999886 7999999999999992     357999999


Q ss_pred             CCc-eEEE-EcCCcEEEEcCCC
Q 041916          151 QKG-LLAV-GTGSFVQILGDFS  170 (359)
Q Consensus       151 ~~g-l~~~-~~d~~i~i~d~~~  170 (359)
                      |++ ++++ +..++|++|.+..
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEecc
Confidence            999 5555 4568999998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=2.1e-15  Score=127.70  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=113.9

Q ss_pred             CeEEEe-CCCcEEEEeccC-CCe-EEEEEec--CCCEEEEEe--cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDGTELHCLKEH-GAV-LKLQFLR--NHFLLASIN--KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h-~~~-~~l~~s~--~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      .||||| ++.+.++++..- ..+ --++++|  .+.+||.-+  ..|.|.+||+.+-+.+..+..|.+++.+++|+|+|.
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~  186 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT  186 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC
Confidence            389999 999999998865 333 3445554  556887643  368999999999999999999999999999999999


Q ss_pred             EEEEEeCCCe-EEEEeCCCCcceEEEecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           74 VVSLGHSGGT-VTMWKPTTAAPLIKMLCH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        74 ~l~sg~~dg~-v~lwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      +||++|..|+ |+|+.+.+|+.+..|+..  ...|.+++|+|++.+|++.|..++|.+|-+...
T Consensus       187 llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  187 LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999998 789999999999888732  346889999999999999999999999998753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=5.5e-16  Score=137.00  Aligned_cols=203  Identities=19%  Similarity=0.285  Sum_probs=146.5

Q ss_pred             eEEEEEe-----cCCCEEEEEecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 041916           21 VLKLQFL-----RNHFLLASINKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        21 ~~~l~~s-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~   90 (359)
                      ++|-+|+     |.+--|..|-..|.|.+.|....+....+.    .....|+|+.|-|.+ ..++++..+|.+++||..
T Consensus       171 P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~  250 (636)
T KOG2394|consen  171 PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE  250 (636)
T ss_pred             CceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence            4555663     345567778888999999976532222121    133689999999955 677788899999999742


Q ss_pred             C----------------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916           91 T----------------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--  140 (359)
Q Consensus        91 ~----------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--  140 (359)
                      -                            ..|+..+.-..+.|+.++|+|||.+||+.+.||.++|||..+.+++..+  
T Consensus       251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS  330 (636)
T KOG2394|consen  251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS  330 (636)
T ss_pred             ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh
Confidence            1                            1223333334567899999999999999999999999999987765544  


Q ss_pred             -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE----------------
Q 041916          141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL----------------  201 (359)
Q Consensus       141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l----------------  201 (359)
                       -+...|++|||||  ++++|.|.-|.||.+... +.+..-.+|.    ++|..|+|.|.-...                
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHk----SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~  405 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHK----SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDV  405 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccc----cceeeEeecccccccccccccccccccccch
Confidence             5778999999999  778889999999996554 5555555554    499999999622111                


Q ss_pred             ---------EEEcCCC-----------eEEEEEcCCCCCccccccCC
Q 041916          202 ---------GIGHSMG-----------WSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       202 ---------~~~~~dg-----------~~~i~~~~~~d~~~~~~~~~  228 (359)
                               .+++.++           ...-|-+.+.|..+.+||+.
T Consensus       406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt  452 (636)
T KOG2394|consen  406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT  452 (636)
T ss_pred             hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence                     0233333           55567888899999999985

>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.70  E-value=3.8e-17  Score=107.29  Aligned_cols=79  Identities=66%  Similarity=1.119  Sum_probs=73.4

Q ss_pred             eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccChhhhchhhhhhhhhcCCCCceeeCC
Q 041916          178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNP  257 (359)
Q Consensus       178 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~  257 (359)
                      |..|.. .+..|.++.|+|..++|.+|+..|+.+++++|+++.+++.++.|||++.+|+++.+|+.+|+|++|++|++||
T Consensus         2 Ym~h~~-~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP   80 (80)
T PF08149_consen    2 YMTHLK-PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP   80 (80)
T ss_pred             CccccC-CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence            344533 5668999999999999999999999999999999999999999999999999999999999999999999986

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.70  E-value=3e-15  Score=136.04  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=156.9

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCC---EEEEEecCCeEEEEECCCCe-------------------------
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHF---LLASINKFGQLRYQDVTMGE-------------------------   51 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~-------------------------   51 (359)
                      |.+|| ..-..+.++.+|... +|+.|.|+..   ++++|+.|+.|.+|.++...                         
T Consensus        36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~  115 (764)
T KOG1063|consen   36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMT  115 (764)
T ss_pred             EEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEE
Confidence            67888 444567889999987 9999998766   78999999888888765110                         


Q ss_pred             -------------------------------------------------------------------EEEEEecCCCCeE
Q 041916           52 -------------------------------------------------------------------IVGNFRTGLGRTD   64 (359)
Q Consensus        52 -------------------------------------------------------------------~~~~~~~~~~~v~   64 (359)
                                                                                         .+..+.+|.+.|.
T Consensus       116 ~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIr  195 (764)
T KOG1063|consen  116 CKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIR  195 (764)
T ss_pred             eeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhh
Confidence                                                                               0111457888888


Q ss_pred             EEEEcCCC---CEEEEEeCCCeEEEEeCCCCc---------------------ceEE----------EeccCCCeEEEEE
Q 041916           65 VMRVNPFN---GVVSLGHSGGTVTMWKPTTAA---------------------PLIK----------MLCHQGPVSALAF  110 (359)
Q Consensus        65 ~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~---------------------~~~~----------~~~h~~~v~~i~~  110 (359)
                      +++|...+   .+|+++|.|..|+||.+.-+.                     ....          +.+|.+.|.++.|
T Consensus       196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W  275 (764)
T KOG1063|consen  196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW  275 (764)
T ss_pred             hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence            88887644   489999999999999753211                     1111          2389999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCc--eeeEe--c---c---CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--Cccc
Q 041916          111 HPNGHLMATSGKECKIKIWDLRKY--EVLQT--L---P---GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS--HNYS  176 (359)
Q Consensus       111 ~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~--~---~---~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~--~~~~  176 (359)
                      +|.+..|++++.|.++.+|.....  --+..  +   .   +......|+|++  +++-+..|..++|......  ....
T Consensus       276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~  355 (764)
T KOG1063|consen  276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP  355 (764)
T ss_pred             ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence            999999999999999999977653  22222  2   2   235788899999  7777888999999832221  1223


Q ss_pred             eeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       177 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      .+.+|..    .|.+++|+|.|.+|++.+.|.+.++|...
T Consensus       356 ~iSGH~~----~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  356 VISGHVD----GVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             ccccccc----cceeeeecCCCCEEEEeccccceeeeccc
Confidence            3445654    89999999999999999999988887766

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7.1e-15  Score=118.02  Aligned_cols=177  Identities=12%  Similarity=0.121  Sum_probs=133.2

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE------EEEEe--c-----CCCCeEEEEEcCCCCEEE
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI------VGNFR--T-----GLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~--~-----~~~~v~~~~~sp~~~~l~   76 (359)
                      .+...++|.++ +.++|.  ..+|++|+ ||.|+=|.......      +....  .     .-..|++|...|..+-++
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            35566899998 999998  34677776 59999998753211      11111  1     223588999999887777


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------------CC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------------GH  143 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~  143 (359)
                      .++.|+.++-||+.+|+....+.+|.+.|.+++--.....+++|+.||++++||+++++++..+.             ..
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w  210 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW  210 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence            77799999999999999999999999999999986666679999999999999999999888771             12


Q ss_pred             ceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          144 AKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       144 i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      |.+++.+.+ .++||.+..+.+|.++.. .+...+.-..     ++..+.|..+
T Consensus       211 igala~~ed-WlvCGgGp~lslwhLrss-e~t~vfpipa-----~v~~v~F~~d  257 (325)
T KOG0649|consen  211 IGALAVNED-WLVCGGGPKLSLWHLRSS-ESTCVFPIPA-----RVHLVDFVDD  257 (325)
T ss_pred             eEEEeccCc-eEEecCCCceeEEeccCC-CceEEEeccc-----ceeEeeeecc
Confidence            445554444 778888899999998776 4544444321     5777888754

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.1e-15  Score=125.14  Aligned_cols=203  Identities=15%  Similarity=0.156  Sum_probs=138.8

Q ss_pred             CeEEEeCCCcEEEEeccC--CCeEEEEEecCC-CEEEEEecCCeEEEEECCCC-e-------------EEEEEecCCCCe
Q 041916            1 YPYIYNRDGTELHCLKEH--GAVLKLQFLRNH-FLLASINKFGQLRYQDVTMG-E-------------IVGNFRTGLGRT   63 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h--~~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-~-------------~~~~~~~~~~~v   63 (359)
                      .|+|||...++...++..  ..++|++|-|.+ .-|+.|... -|++|..+.. .             .+....+| .+|
T Consensus       121 vVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pV  198 (445)
T KOG2139|consen  121 VVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPV  198 (445)
T ss_pred             EEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-cee
Confidence            478999555776667654  346999999975 556666654 6999987531 1             11222344 689


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEec-
Q 041916           64 DVMRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTL-  140 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~-  140 (359)
                      ++|+|++||..+++++. |..|.|||+.++..+.......+.++-+.|||||.+|+.++-|+..++|+.. ++....-. 
T Consensus       199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l  278 (445)
T KOG2139|consen  199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL  278 (445)
T ss_pred             eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence            99999999999998874 6779999999987655444456778899999999999999999999999554 44433322 


Q ss_pred             -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCcc--------------------ceeecccCCCCcceEEEEEee
Q 041916          141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNY--------------------SRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~p  196 (359)
                       .+.|...+|+|.|   +++++...  .+|.+....+..                    ....+... ..+.+.+++|.|
T Consensus       279 gsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l-~cgeaq~lawDp  355 (445)
T KOG2139|consen  279 GSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL-CCGEAQCLAWDP  355 (445)
T ss_pred             cCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc-ccCccceeeECC
Confidence             6789999999999   44444333  334322211110                    01111111 245789999999


Q ss_pred             CCCEEEEEcCCC
Q 041916          197 YEDVLGIGHSMG  208 (359)
Q Consensus       197 ~~~~l~~~~~dg  208 (359)
                      .|.+|++.-..+
T Consensus       356 sGeyLav~fKg~  367 (445)
T KOG2139|consen  356 SGEYLAVIFKGQ  367 (445)
T ss_pred             CCCEEEEEEcCC
Confidence            999998854443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.7e-15  Score=118.15  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=121.3

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      +++|...|..+-+++++.|+.++-||+.+|+..+.+++|.+.|+++.--..+..+++|+.||++++||+++++.+..+..
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            48999999877777777899999999999999999999999999999856667889999999999999999998877653


Q ss_pred             c---------CC-CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcC
Q 041916          101 H---------QG-PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGD  168 (359)
Q Consensus       101 h---------~~-~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~  168 (359)
                      .         .+ .|.+++.+  ..+|++|+ ...+.+|.++..++...|  ++++..+.|..+.++++|..+.+.-|.+
T Consensus       197 yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             ccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeee
Confidence            2         22 35566554  44777655 467999999998877776  7899999999998999998999999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=1.3e-13  Score=123.68  Aligned_cols=213  Identities=11%  Similarity=0.053  Sum_probs=138.6

Q ss_pred             CeEEEe-C-CCc--EEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECC-CCeE--EEEEecCCCCeEEEEEcCCC
Q 041916            1 YPYIYN-R-DGT--ELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVT-MGEI--VGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd-~-~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~~~~sp~~   72 (359)
                      .|++|+ . +|.  .+..+.....+..++++|++++|++++ .++.|.+|++. ++..  +.... ..+.+..++|+|++
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g   91 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQG   91 (330)
T ss_pred             CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCC
Confidence            478899 4 354  456665545568899999999887664 57899999997 3432  22222 23456789999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCCC-c---ceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeE-------e
Q 041916           73 GVVSLGH-SGGTVTMWKPTTA-A---PLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQ-------T  139 (359)
Q Consensus        73 ~~l~sg~-~dg~v~lwd~~~~-~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-------~  139 (359)
                      ++|++++ .++.|.+|++.+. .   .+..+. +.....+++++|+|+++++++ .++.|.+||+.+...+.       .
T Consensus        92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~  170 (330)
T PRK11028         92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT  170 (330)
T ss_pred             CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence            9888776 4889999998742 2   222222 223457789999999986655 56899999998632221       1


Q ss_pred             c--cCCceeEEEcCCc--eEEEEc-CCcEEEEcCCCCCCc---cceeecccC--CCCcceEEEEEeeCCCEEEEEcC-CC
Q 041916          140 L--PGHAKTLDFSQKG--LLAVGT-GSFVQILGDFSGSHN---YSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHS-MG  208 (359)
Q Consensus       140 ~--~~~i~~~~~s~~g--l~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~-dg  208 (359)
                      .  ...+..++|+|+|  ++++.. ++.|.+|++......   ...+...+.  ........+.|+|++++|+++.. ++
T Consensus       171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~  250 (330)
T PRK11028        171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS  250 (330)
T ss_pred             cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence            1  2346789999999  445554 799999997632111   222221110  01112346889999998888743 45


Q ss_pred             eEEEEEc
Q 041916          209 WSSILVP  215 (359)
Q Consensus       209 ~~~i~~~  215 (359)
                      .+.+|..
T Consensus       251 ~I~v~~i  257 (330)
T PRK11028        251 LISVFSV  257 (330)
T ss_pred             eEEEEEE
Confidence            5555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=6.7e-14  Score=125.63  Aligned_cols=210  Identities=16%  Similarity=0.202  Sum_probs=135.9

Q ss_pred             eEEEe-C-CCcE--EEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECCC-Ce---EEEEEecCCCCeEEEEEcCCC
Q 041916            2 PYIYN-R-DGTE--LHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVTM-GE---IVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd-~-~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      |.+|+ . +|..  +........+..++|+|++++|++++. ++.|.+|++.+ +.   .+..+. +...+.+++++|++
T Consensus        59 i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g  137 (330)
T PRK11028         59 VLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN  137 (330)
T ss_pred             EEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence            56677 3 4432  233332234588999999998887764 88999999974 32   233332 23456789999999


Q ss_pred             CEEEEE-eCCCeEEEEeCCCCcceE-------EEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c--eeeEe
Q 041916           73 GVVSLG-HSGGTVTMWKPTTAAPLI-------KMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRK--Y--EVLQT  139 (359)
Q Consensus        73 ~~l~sg-~~dg~v~lwd~~~~~~~~-------~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~--~--~~~~~  139 (359)
                      ++++++ ..++.|.+||+.+...+.       ..... .....++|+|+|+++++++. +++|.+||+..  +  +.+..
T Consensus       138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~  216 (330)
T PRK11028        138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT  216 (330)
T ss_pred             CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence            887554 466999999997632221       11122 23578999999999988876 89999999973  2  23333


Q ss_pred             c---cC------CceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC-
Q 041916          140 L---PG------HAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-  206 (359)
Q Consensus       140 ~---~~------~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-  206 (359)
                      +   +.      ....+.++|+|  ++++. .++.|.+|++....... .+..+.. .+.....++|+|+|++|+++.. 
T Consensus       217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~  294 (330)
T PRK11028        217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQP-TETQPRGFNIDHSGKYLIAAGQK  294 (330)
T ss_pred             EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEe-ccccCCceEECCCCCEEEEEEcc
Confidence            3   11      12468899999  45543 46899999975543222 2222211 1224567899999998887664 


Q ss_pred             CCeEEEEEc
Q 041916          207 MGWSSILVP  215 (359)
Q Consensus       207 dg~~~i~~~  215 (359)
                      ++.+.+|..
T Consensus       295 ~~~v~v~~~  303 (330)
T PRK11028        295 SHHISVYEI  303 (330)
T ss_pred             CCcEEEEEE
Confidence            555555543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=1.8e-14  Score=118.17  Aligned_cols=144  Identities=16%  Similarity=0.278  Sum_probs=106.2

Q ss_pred             EEEEEecCCCEEEEEec----------CCeEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 041916           22 LKLQFLRNHFLLASINK----------FGQLRYQDVTM-GEIVGNFRT-GLGRTDVMRVNPFNGVVSLG--HSGGTVTMW   87 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg--~~dg~v~lw   87 (359)
                      ..+.|+|+|.+|+.-..          -|...+|.++. +..+..+.. ..++|.+++|+|+|..|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            67889999977665332          13345555522 234444443 34579999999999886554  467799999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEecc-CCceeEEEcCCc--eEEEE---
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTLP-GHAKTLDFSQKG--LLAVG---  158 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~g--l~~~~---  158 (359)
                      |++ ++++..+  +...++.|.|+|+|++|++++.   .|.|.+||+++.+.+..+. ..++.++|||+|  +++++   
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence            996 6566665  3567889999999999999874   3679999999999988883 457999999999  44443   


Q ss_pred             ---cCCcEEEEcC
Q 041916          159 ---TGSFVQILGD  168 (359)
Q Consensus       159 ---~d~~i~i~d~  168 (359)
                         .|+.++||+.
T Consensus       166 r~~~dng~~Iw~~  178 (194)
T PF08662_consen  166 RLRVDNGFKIWSF  178 (194)
T ss_pred             ceeccccEEEEEe
Confidence               3688999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.5e-13  Score=114.57  Aligned_cols=167  Identities=16%  Similarity=0.212  Sum_probs=129.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCC--CeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLG--RTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s   77 (359)
                      |.||| ....++.++.-...+.++.++++  .|++.- .+.|.||... +.+.++.+..-..  ...+++-+.+..+||.
T Consensus        77 viIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   77 VIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             EEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence            68999 77888999988888899999876  344443 5699999987 4556666654322  2333333333345554


Q ss_pred             -EeCCCeEEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEec-----cCCceeEE
Q 041916           78 -GHSGGTVTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQTL-----PGHAKTLD  148 (359)
Q Consensus        78 -g~~dg~v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~-----~~~i~~~~  148 (359)
                       |-.-|.|.|-|+.....  ...+.+|.+.|.|++.+.+|..+||+|..|+ |+|||..+|..+.++     ...|.+++
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia  233 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA  233 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence             44569999999886554  5678899999999999999999999999986 899999999999999     34689999


Q ss_pred             EcCCc-eEEEEcC-CcEEEEcCCCC
Q 041916          149 FSQKG-LLAVGTG-SFVQILGDFSG  171 (359)
Q Consensus       149 ~s~~g-l~~~~~d-~~i~i~d~~~~  171 (359)
                      |||++ ++++++| |+|+||.+...
T Consensus       234 FSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  234 FSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999 6666655 99999987553

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=1.1e-14  Score=121.38  Aligned_cols=203  Identities=16%  Similarity=0.182  Sum_probs=153.8

Q ss_pred             eEEEe---CC-CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-C--eEEEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN---RD-GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-G--EIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd---~~-g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~--~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      |.||.   .+ -+..++++.|... ++++|+|..+.|++|+.|..-++|.... +  ++...+.-++...+++.|+|.++
T Consensus        34 vhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en  113 (361)
T KOG1523|consen   34 VHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN  113 (361)
T ss_pred             EEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc
Confidence            45665   22 3467999999998 9999999999999999999999999843 3  34455566888999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcce----EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----C-----------
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPL----IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-----K-----------  133 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~----~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-----~-----------  133 (359)
                      .||+||....|.||-+.....-    ..-..+.+.|+++.|+|++-+|++|+.|+..++|..-     .           
T Consensus       114 kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~  193 (361)
T KOG1523|consen  114 KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKM  193 (361)
T ss_pred             eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCC
Confidence            9999999999999987654321    1122567889999999999999999999999998541     1           


Q ss_pred             --ceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          134 --YEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       134 --~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                        |..+.++   .+.+..+.|+|+|  +.-++.|+.+.+-|.....+.+........    +..++.|-.+...+++|..
T Consensus       194 PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l----P~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  194 PFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL----PLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             cHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC----CceeeEeecCCceeecCCC
Confidence              1222333   3568999999999  777899999999995544333443333334    8889999887766666555


Q ss_pred             CC
Q 041916          207 MG  208 (359)
Q Consensus       207 dg  208 (359)
                      -+
T Consensus       270 c~  271 (361)
T KOG1523|consen  270 CG  271 (361)
T ss_pred             CC
Confidence            44

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=4.9e-15  Score=126.41  Aligned_cols=216  Identities=15%  Similarity=0.102  Sum_probs=157.6

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------CeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------GEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTV   84 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v   84 (359)
                      +.+.+|.++ +++.|+.++++|++|+.|..+++|++..      .+++..... |.+.|.|++|...+..+++|..+|+|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            345678998 9999999999999999999999999863      345544433 55889999999999999999999999


Q ss_pred             EEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec-----cCCceeEEEcCCc---
Q 041916           85 TMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL-----PGHAKTLDFSQKG---  153 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-----~~~i~~~~~s~~g---  153 (359)
                      .+-|+.+.+.+..+.  ...+.|..+..+|..+.|++.+.++.|.+||.|... +..-+     +....++-|+|-.   
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999988776654  234589999999999999999999999999999754 22222     4456888999987   


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCC--CcceEEEEEeeCCCEEEEE--------------------cC---CC
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK--GYQIGKVSFRPYEDVLGIG--------------------HS---MG  208 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~--------------------~~---dg  208 (359)
                      +++.+..+-+.+||.+....++..+.....-+  .....++.|+|.|..|.+-                    +.   +|
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            55566678899999766544443332221100  1123556677766544321                    00   12


Q ss_pred             eE-------------EEEEcCCCCCccccccCC
Q 041916          209 WS-------------SILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       209 ~~-------------~i~~~~~~d~~~~~~~~~  228 (359)
                      ..             .-+.+|+.+-++.+|.+.
T Consensus       290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             ceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence            11             126789999999999985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.64  E-value=8.1e-14  Score=129.30  Aligned_cols=198  Identities=14%  Similarity=0.135  Sum_probs=136.9

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |+++|.+|.....+..+... .+.+|+|||++|+.++..   ..|++||+.++.... +..+.+.+.+++|+|+|..|+.
T Consensus       172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~  250 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAV  250 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence            66777666666666666664 889999999999887643   489999999886533 3345566778999999987664


Q ss_pred             -EeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec--cCCceeEEE
Q 041916           78 -GHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        78 -g~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                       .+.++  .|++||+.++.. ..+..+........|+|||+.|+.++.. +  .|+++|+.+++.....  ......+.|
T Consensus       251 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~  329 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW  329 (417)
T ss_pred             EECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence             44444  588899887643 3444455556678999999998776643 2  6888898876543322  345678899


Q ss_pred             cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +|+|  ++.++.++   .|.+||+.++  ....+....     ......|+|++++|+.++.++
T Consensus       330 spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       330 SPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDTG-----LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCCC-----CCCCceECCCCCEEEEEEeCC
Confidence            9999  44455443   7888987654  222222221     234568999999888877765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=2.3e-14  Score=117.65  Aligned_cols=152  Identities=16%  Similarity=0.274  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CcceEEEe-ccCCCeEEEEEcCCCCEEEEEe--CCCeEEEE
Q 041916           64 DVMRVNPFNGVVSLGHS----------GGTVTMWKPTT-AAPLIKML-CHQGPVSALAFHPNGHLMATSG--KECKIKIW  129 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~----------dg~v~lwd~~~-~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iw  129 (359)
                      ..+.|+|+|.+|++-..          -|...+|.++. ..+...+. ...++|.+++|+|+|+.|+++.  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999977665332          13455555532 23444444 2456799999999999976653  56799999


Q ss_pred             EcCCceeeEec-cCCceeEEEcCCc--eEEEEc---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          130 DLRKYEVLQTL-PGHAKTLDFSQKG--LLAVGT---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       130 d~~~~~~~~~~-~~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      |++ ++++..+ ...+..+.|||+|  +++++.   .|.|.+||..+. ..+.... |.     .++.++|+|+|++|++
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~~-----~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-HS-----DATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-cC-----cEEEEEEcCCCCEEEE
Confidence            997 6777777 5578999999999  555553   367999997644 3333322 22     5789999999999999


Q ss_pred             EcCCCeEEEEEcCCCCCccccccCCC
Q 041916          204 GHSMGWSSILVPGSGEPNFDSWVANP  229 (359)
Q Consensus       204 ~~~dg~~~i~~~~~~d~~~~~~~~~~  229 (359)
                      ++....      -..|+.+++|+...
T Consensus       161 a~t~~r------~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  161 ATTSPR------LRVDNGFKIWSFQG  180 (194)
T ss_pred             EEeccc------eeccccEEEEEecC
Confidence            876531      23578889998753

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4e-14  Score=119.83  Aligned_cols=180  Identities=15%  Similarity=0.298  Sum_probs=131.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC----Ccc
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTT----AAP   94 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~----~~~   94 (359)
                      ...++|++.-.-+|++..|-+|++||-.. .+...++. ....|+|++|-|.+ ..|+.|+..| |++|....    +.+
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~  178 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN  178 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence            37889999767788999999999999876 55555553 34579999999976 5677777765 89997542    111


Q ss_pred             e----------EEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEE
Q 041916           95 L----------IKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus        95 ~----------~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~  158 (359)
                      +          ....+| .+|+++.|++||..+++++. |..|.+||..++..+.-.   .+.++-+.|||||  ++++.
T Consensus       179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence            1          111234 58999999999999999884 678999999987654433   4678899999999  88899


Q ss_pred             cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          159 TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       159 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      .|+..++|+.... -.......-.+    .|...+|+|+|++|+.+....
T Consensus       258 ~davfrlw~e~q~-wt~erw~lgsg----rvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  258 CDAVFRLWQENQS-WTKERWILGSG----RVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             ccceeeeehhccc-ceecceeccCC----ceeeeeecCCCCEEEEEEcCC
Confidence            9999999963332 11122222212    799999999999876655443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=118.31  Aligned_cols=207  Identities=15%  Similarity=0.192  Sum_probs=149.6

Q ss_pred             eEEEe-CCCcEEEEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE--------------EE--------
Q 041916            2 PYIYN-RDGTELHCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG--------------NF--------   56 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~--------   56 (359)
                      |.+|+ .+...+..++ .|... +.+.-.|+ ..|.+-+.|+.+.+|++.-+..+.              .+        
T Consensus        37 V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~e  115 (323)
T KOG0322|consen   37 VKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSE  115 (323)
T ss_pred             EEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcch
Confidence            67888 5666666777 34444 88888887 457788899999999987532111              00        


Q ss_pred             -------------------------------ecCCCCeEEEEEcC-CC--CEEEEEeCCCeEEEEeCCCCc---------
Q 041916           57 -------------------------------RTGLGRTDVMRVNP-FN--GVVSLGHSGGTVTMWKPTTAA---------   93 (359)
Q Consensus        57 -------------------------------~~~~~~v~~~~~sp-~~--~~l~sg~~dg~v~lwd~~~~~---------   93 (359)
                                                     .+..+.+.|..|.. .+  -++++|-.+|.|.+||++++.         
T Consensus       116 qll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~  195 (323)
T KOG0322|consen  116 QLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS  195 (323)
T ss_pred             hheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc
Confidence                                           01123344444322 22  257778899999999999873         


Q ss_pred             -ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--ee-e---Eec-cCCceeEEEcCCc--eEEEEcCCcE
Q 041916           94 -PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EV-L---QTL-PGHAKTLDFSQKG--LLAVGTGSFV  163 (359)
Q Consensus        94 -~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~-~---~~~-~~~i~~~~~s~~g--l~~~~~d~~i  163 (359)
                       .+.....|..+|.++.|.+.-..=++|+.+..+..|.+.-.  .+ +   .++ .-.+..+.+-||+  ++++|.|+.|
T Consensus       196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~Ri  275 (323)
T KOG0322|consen  196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRI  275 (323)
T ss_pred             ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcE
Confidence             23334478999999999986666678888888999988642  21 1   122 3468899999999  7788999999


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +||+.++. .++..+.-|..    .|++++|+|+..++++++.|+.+++|-
T Consensus       276 RVyswrtl-~pLAVLkyHsa----gvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  276 RVYSWRTL-NPLAVLKYHSA----GVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             EEEEeccC-Cchhhhhhhhc----ceeEEEeCCCCchhhhccCCceEEeee
Confidence            99998777 67788888865    899999999999999988888777763

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.3e-14  Score=134.61  Aligned_cols=186  Identities=15%  Similarity=0.178  Sum_probs=125.0

Q ss_pred             eEEEe-CCCcE--EEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEE--EECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTE--LHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRY--QDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |++|| .+|..  +..+.+|.  ..++|+|||+.|++++ .+|.+.|  ||+.++. +..+..+...+...+|+|||..|
T Consensus       230 i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i  306 (429)
T PRK01742        230 LVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSI  306 (429)
T ss_pred             EEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEE
Confidence            78899 55543  33333332  5789999999887764 5776555  5666665 44566676778899999999977


Q ss_pred             EEEe-CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cCCceeEEEcCCc
Q 041916           76 SLGH-SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG  153 (359)
Q Consensus        76 ~sg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g  153 (359)
                      +.++ .+|...||+++..........+.+  .+++|+|||++|++++.++ +.+||+.++...... .....+++|+|+|
T Consensus       307 ~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG  383 (429)
T PRK01742        307 LFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG  383 (429)
T ss_pred             EEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC
Confidence            6554 578888887654322222224443  4578999999998888765 566999988654322 2234678899999


Q ss_pred             --eEEEEcCCcEEEEcCCC-CCCccceeecccCCCCcceEEEEEeeC
Q 041916          154 --LLAVGTGSFVQILGDFS-GSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       154 --l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                        ++.++.++.+.+|.+.. .+.....+..|..    .+..++|+|.
T Consensus       384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g----~~~~p~wsp~  426 (429)
T PRK01742        384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG----QVKFPAWSPY  426 (429)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCceEEccCCCC----CCCCcccCCC
Confidence              66666777777776422 2245566665544    6888999985

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=4.7e-16  Score=135.21  Aligned_cols=202  Identities=12%  Similarity=0.109  Sum_probs=165.3

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      |-.+| .++.....+.....+.++.|..+.+++|++- ...++|||- .|..++.++.| ..|..+.|-|..-+|++++.
T Consensus       153 lAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~  229 (545)
T KOG1272|consen  153 LAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASE  229 (545)
T ss_pred             eeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhhc-Cchhhhcccchhheeeeccc
Confidence            44556 6677777777666778899998888888775 568999994 58888888877 57899999999999999999


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eE
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LL  155 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~  155 (359)
                      .|.+..-|+.+|+.+..+....+.+..++-+|-+-.+-+|...|+|.+|...+.+++..+   .++|.+|++.++|  ++
T Consensus       230 ~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa  309 (545)
T KOG1272|consen  230 AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA  309 (545)
T ss_pred             CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe
Confidence            999999999999999999888899999999999999999999999999999998886655   7899999999999  77


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++|.|..|+|||+++-.++......|      +...++||..|  |++.+....+.+|-
T Consensus       310 TtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  310 TTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ecccccceeEeeeccccccceeecCC------Ccccccccccc--ceeeecCCeeeeeh
Confidence            88899999999988764333333334      67778888655  44555555566664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=3.6e-14  Score=134.64  Aligned_cols=219  Identities=14%  Similarity=0.210  Sum_probs=157.1

Q ss_pred             eEEEe-CCCcEEEEeccCCC----eEEEEEec--CCCEEEEEecCCeEEEEECCC-----CeEEEEEec-------CCCC
Q 041916            2 PYIYN-RDGTELHCLKEHGA----VLKLQFLR--NHFLLASINKFGQLRYQDVTM-----GEIVGNFRT-------GLGR   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~----~~~l~~s~--~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~-------~~~~   62 (359)
                      |.||| ..++.+..|..+..    ++.+.+-.  |..+|++|+.||.|+||+-..     .+.+..+.+       ..+.
T Consensus      1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred             EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence            78999 88888888876543    47777765  457899999999999998532     233333321       1122


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee---e
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV---L  137 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~  137 (359)
                      -..+.|.....+|++++.-..|+|||......+..+. +...-|++++-+- .|+.+++|..||.|++||.|...+   +
T Consensus      1168 ~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1168 GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred             CeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence            2456787777777777778899999998776666554 3344577776553 579999999999999999997533   3


Q ss_pred             Eec---cC--CceeEEEcCCc---eEEEEcCCcEEEEcCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          138 QTL---PG--HAKTLDFSQKG---LLAVGTGSFVQILGDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       138 ~~~---~~--~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ..+   ..  +|..+.+.+.|   +++++.+|.|++||++.. ......+..|.. -++.++++..++....+++|+. +
T Consensus      1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~-yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE-YGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred             eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc-cCccceeeeeccCCCeeeecCc-c
Confidence            332   22  38899998887   899999999999998774 222233334421 2446999999999999999999 8


Q ss_pred             eEEEEEcCCCCCcc
Q 041916          209 WSSILVPGSGEPNF  222 (359)
Q Consensus       209 ~~~i~~~~~~d~~~  222 (359)
                      .+.||...+..-++
T Consensus      1326 ~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNI 1339 (1387)
T ss_pred             eEEEEecChhhhcc
Confidence            88888766554333

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=9.2e-15  Score=130.07  Aligned_cols=161  Identities=16%  Similarity=0.230  Sum_probs=133.4

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----------eEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----------EIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +.+.+|++|.++ .|+++++++..+++|+.||+|+.|++...          .....+.+|.+.|+.+++|+....|+++
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc  414 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC  414 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence            458899999998 99999999999999999999999966421          2345678999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEe------------------cc----------------------------------CCCeE
Q 041916           79 HSGGTVTMWKPTTAAPLIKML------------------CH----------------------------------QGPVS  106 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~------------------~h----------------------------------~~~v~  106 (359)
                      +.||+|++|+.....+ .++.                  .|                                  ...+.
T Consensus       415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            9999999998754433 0000                  00                                  12356


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      -+.++|.+.+.+++..|+.|+++|..++.+++..   ...++++++.|+|  +++++.|+.+.+|.+...
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            7888999999999999999999999999998887   4468999999999  778889999999986443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=3.8e-14  Score=136.33  Aligned_cols=219  Identities=16%  Similarity=0.102  Sum_probs=156.4

Q ss_pred             EeCCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            5 YNRDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         5 wd~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |+..|..+..+..|... ..++.++.+ .+++|||.||+|++||+..-       +...++..-.+.+.++.+.+.+..+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            67789999999999886 888887765 99999999999999998641       1222333345788999999999999


Q ss_pred             EEEeCCCeEEEEeCCCC--cc-----eEEEecc-CCCe-EEEEEcC-CC-CEEEEEeCCCeEEEEEcCCceeeEec----
Q 041916           76 SLGHSGGTVTMWKPTTA--AP-----LIKMLCH-QGPV-SALAFHP-NG-HLMATSGKECKIKIWDLRKYEVLQTL----  140 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~--~~-----~~~~~~h-~~~v-~~i~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----  140 (359)
                      |+|+.||.|.+.++...  ..     ......+ .+.+ ..-+|.. .+ ..++.+..-+.|..||+++......+    
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            99999999999998752  11     1111111 2233 3333332 23 37888888899999999986655544    


Q ss_pred             -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC---EEEEEc--CCCeEEE
Q 041916          141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED---VLGIGH--SMGWSSI  212 (359)
Q Consensus       141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~~~~--~dg~~~i  212 (359)
                       .|.|++++.+|.+  ++.|+..|.+.+||++.+.....--..    ...++..+..+|...   +.++++  ..+.+++
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence             5779999999999  677778899999998876322222222    234788888877544   444444  4567888


Q ss_pred             EEcCCCCCccccccC
Q 041916          213 LVPGSGEPNFDSWVA  227 (359)
Q Consensus       213 ~~~~~~d~~~~~~~~  227 (359)
                      |....+.+..-+|..
T Consensus      1270 wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWAS 1284 (1431)
T ss_pred             eecccCcceEEEEcC
Confidence            887777888778866

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.3e-13  Score=128.72  Aligned_cols=222  Identities=17%  Similarity=0.218  Sum_probs=155.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCC---CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE--------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNH---FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR--------   67 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--------   67 (359)
                      .|.||. .+|.+++.+.+|..+ +.+.+.|..   .++.+++.||.|++||...+..+.++..+. ++.++.        
T Consensus        38 ~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~  116 (792)
T KOG1963|consen   38 FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADI  116 (792)
T ss_pred             EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCc
Confidence            378999 999999999999998 999998853   577899999999999999888777655321 222222        


Q ss_pred             ---------------------------------------------------EcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916           68 ---------------------------------------------------VNPFNGVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        68 ---------------------------------------------------~sp~~~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                                                                         +++.|.+.+.. .+..+.+|.........
T Consensus       117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~  195 (792)
T KOG1963|consen  117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHT  195 (792)
T ss_pred             cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccceee
Confidence                                                               22222221111 12345566655533110


Q ss_pred             E---E-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--c-----eeeEeccCCceeEEEcCCc--eEEEEcCCcE
Q 041916           97 K---M-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK--Y-----EVLQTLPGHAKTLDFSQKG--LLAVGTGSFV  163 (359)
Q Consensus        97 ~---~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~--~-----~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i  163 (359)
                      .   . ..|.-.+++.++||+++++|++..||.|.+|.--.  .     ..++-....|.+++|+++|  +++||..+.+
T Consensus       196 ~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL  275 (792)
T KOG1963|consen  196 SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL  275 (792)
T ss_pred             ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEE
Confidence            0   0 13555689999999999999999999999995322  1     1222225689999999999  9999999999


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCc
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~  230 (359)
                      .+|.+.++.+..-+-.      +++|..+.++||+.+.++...|..+.++-.....-...+-.+.|.
T Consensus       276 v~Wq~~T~~kqfLPRL------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  276 VLWQLETGKKQFLPRL------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             EEEeecCCCccccccc------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence            9999888753222222      348999999999999999999998887765554444444444443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=7.4e-14  Score=132.59  Aligned_cols=192  Identities=15%  Similarity=0.204  Sum_probs=140.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc---ceE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTAA---PLI   96 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~~---~~~   96 (359)
                      .-++|.....+|+++|.-..|+|||+....++..+... ...|+++.-+- .|++|++|..||.|++||.+...   .+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            44577665556666666889999999988777776643 34566665433 46899999999999999988653   466


Q ss_pred             EEeccCCC--eEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceee------Eec-cC-CceeEEEcCCc-eEEEEcCCcEE
Q 041916           97 KMLCHQGP--VSALAFHPNGHL-MATSGKECKIKIWDLRKYEVL------QTL-PG-HAKTLDFSQKG-LLAVGTGSFVQ  164 (359)
Q Consensus        97 ~~~~h~~~--v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~------~~~-~~-~i~~~~~s~~g-l~~~~~d~~i~  164 (359)
                      .+..|...  |..+.+.+.|-- |++|+.||.|.+||+|+....      ... -| ..+++..+++. ++++|..+.|.
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEE
Confidence            67788887  999999987655 999999999999999984211      111 13 48999999999 88877779999


Q ss_pred             EEcCCCCCCccceeecccC---CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          165 ILGDFSGSHNYSRYMGHSM---VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ||++..  ..+..+..+..   .....+.+++|+|.--.+++|+.|.++.++-+
T Consensus      1329 Iy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1329 IYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             EEecCh--hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            999543  22222222211   13346799999999988999888887777654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=5.1e-15  Score=130.96  Aligned_cols=92  Identities=23%  Similarity=0.313  Sum_probs=87.0

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      ++.++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|||||++|++|+.|-.|.||.+...+.+..=++
T Consensus       293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence            48899999999999999999999999999888888887778999999999999999999999999999999998888899


Q ss_pred             cCCCeEEEEEcC
Q 041916          101 HQGPVSALAFHP  112 (359)
Q Consensus       101 h~~~v~~i~~~~  112 (359)
                      |.+.|+.|+|+|
T Consensus       373 HkSWVs~VaFDp  384 (636)
T KOG2394|consen  373 HKSWVSVVAFDP  384 (636)
T ss_pred             cccceeeEeecc
Confidence            999999999998

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=5.9e-13  Score=123.88  Aligned_cols=197  Identities=12%  Similarity=0.040  Sum_probs=132.1

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |+++|.+|.....+..+... ....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.|+.
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEE
Confidence            56677666666666666665 899999999988776543   479999999886533 3333445567899999987764


Q ss_pred             -EeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEec-cC-CceeEEE
Q 041916           78 -GHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQTL-PG-HAKTLDF  149 (359)
Q Consensus        78 -g~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~-~~-~i~~~~~  149 (359)
                       .+.+|  .|.+||+.++.. ..+..+........|+|||+.|+..+. +  ..|+++|+.+++..... .+ ......|
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~  338 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL  338 (430)
T ss_pred             EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence             44455  588889987754 345555666778899999998877664 3  36888888777643322 22 3456789


Q ss_pred             cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      +|+|  ++..+. ++  .|.+||+.++. . ..+. ...    ......|+|+|+.++..+.+
T Consensus       339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~-~~lt-~~~----~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        339 SADGKTLVMVHRQDGNFHVAAQDLQRGS-V-RILT-DTS----LDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCCCEEEEEEccCCceEEEEEECCCCC-E-EEcc-CCC----CCCCceECCCCCEEEEEEec
Confidence            9999  433332 33  58889976652 2 2222 211    22356899999998876654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.2e-13  Score=127.26  Aligned_cols=210  Identities=14%  Similarity=0.149  Sum_probs=151.8

Q ss_pred             cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--C--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916           17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--G--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT   91 (359)
Q Consensus        17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~   91 (359)
                      .|.-. +|.++||+++++|+|..||.|.+|.--.  +  .....+.-|...|++++|+++|.+|++|+..|.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            35555 9999999999999999999999997432  1  23456777889999999999999999999999999999999


Q ss_pred             CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------------cCCceeEEEcCC-c-eE
Q 041916           92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------------PGHAKTLDFSQK-G-LL  155 (359)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~i~~~~~s~~-g-l~  155 (359)
                      ++ ..-+..-.++|..+.++||+.+.+....|..|.+..+.+.....++              .+-.+.++++|. + ++
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            87 3444556789999999999999999999999999987554332222              122477889994 3 77


Q ss_pred             EEEcCCcEEEEcCCCCCCccceee-cccCCC-----CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCC
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYM-GHSMVK-----GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANP  229 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~-----~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~  229 (359)
                      ..+..|.|.+||+.+......... .+....     .-.+++++.+-.|.+++++-..  ...+....+.-.+++|..++
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~--~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR--IDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee--ehhhhccCceEEEEEEEEcC
Confidence            788899999999887643322111 010001     1257788888889999886433  12222233344556665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=4.7e-13  Score=114.43  Aligned_cols=182  Identities=13%  Similarity=0.121  Sum_probs=137.1

Q ss_pred             CEEEEEecCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEeCC--CeEEEEeCCCCcceEEEecc--
Q 041916           31 FLLASINKFGQLRYQDVTMGE----IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSG--GTVTMWKPTTAAPLIKMLCH--  101 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~d--g~v~lwd~~~~~~~~~~~~h--  101 (359)
                      ..|++|-.+|.+.+|....+.    .+..+..+ .++..|.-+|.. .++++|+..  ..+.+||+.+.+.+..-..-  
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence            357788889999999988543    34445444 456666666654 456668888  78999999887544432211  


Q ss_pred             -------CCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEE
Q 041916          102 -------QGPVSALAFHPN--GHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQIL  166 (359)
Q Consensus       102 -------~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~  166 (359)
                             +-.++++.|-|.  ...||+++.-+.|++||.+.+ +|+..|   ..+++++...|+|  ++++..-+.+..|
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF  274 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence                   224678899886  788999999999999999975 577777   6789999999999  7777788999999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      |++.+......+.+..+    .|.++..+|.+.+|++++-|.+++|+..-.
T Consensus       275 D~r~~kl~g~~~kg~tG----sirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  275 DLRGGKLLGCGLKGITG----SIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cccCceeeccccCCccC----CcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            98777433344666655    899999999999999988888777766443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.4e-14  Score=122.43  Aligned_cols=148  Identities=20%  Similarity=0.305  Sum_probs=114.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--  141 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  141 (359)
                      .+++|+++|..+++|+.||++++|+..+...+.....|...|.++.|+|||.+|++.+.| ..+||+..++.++....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            579999999999999999999999977777777788899999999999999999999999 89999999997766652  


Q ss_pred             ---CCceeEEEcCCc-----eEEEEc--CCcEEEEcCCCCC-----CccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          142 ---GHAKTLDFSQKG-----LLAVGT--GSFVQILGDFSGS-----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       142 ---~~i~~~~~s~~g-----l~~~~~--d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                         .....+.|+.++     ++++..  .+.|..|++..-.     +..+....+.     .|++++.+++|++++.|+.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~-----siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK-----SISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC-----cceeEEEcCCCcEEEEecc
Confidence               235677787765     444432  3566665533211     1122222332     6999999999999999999


Q ss_pred             CCeEEEEEcCC
Q 041916          207 MGWSSILVPGS  217 (359)
Q Consensus       207 dg~~~i~~~~~  217 (359)
                      +|.+.++.+-+
T Consensus       302 dGsVai~~~~~  312 (398)
T KOG0771|consen  302 DGSVAIYDAKS  312 (398)
T ss_pred             CCcEEEEEece
Confidence            99888877543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.57  E-value=2.3e-14  Score=126.89  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=127.2

Q ss_pred             CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916           31 FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAF  110 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~  110 (359)
                      ..|+.++.||.+.+.+- .++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-...++.-...+|.|++|
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            46888899999999984 5777788999999999999999999999999999999998 445333333345668999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916          111 HPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK  185 (359)
Q Consensus       111 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  185 (359)
                      .|+++.++.|.. +.+.+=-+.....+..+   .+-|.++.|+|..  ++++|.|-..+|||. .+ ..+.....|.   
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G-~~Lf~S~~~e---  227 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QG-ANLFTSAAEE---  227 (737)
T ss_pred             CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cC-cccccCChhc---
Confidence            998887766654 45666555554434334   5668999999988  778889999999993 44 3444444444   


Q ss_pred             CcceEEEEEeeCCCEEEEEcCC
Q 041916          186 GYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       186 ~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                       .+|++++|.|+ ..+++++.+
T Consensus       228 -y~ITSva~npd-~~~~v~S~n  247 (737)
T KOG1524|consen  228 -YAITSVAFNPE-KDYLLWSYN  247 (737)
T ss_pred             -cceeeeeeccc-cceeeeeee
Confidence             49999999999 555665543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=3e-13  Score=115.62  Aligned_cols=182  Identities=15%  Similarity=0.182  Sum_probs=143.0

Q ss_pred             EEEEeccCCCeEEEEEecCC-CEEEEEecC--CeEEEEECCCCeEEEEEecCC---------CCeEEEEEcCC--CCEEE
Q 041916           11 ELHCLKEHGAVLKLQFLRNH-FLLASINKF--GQLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPF--NGVVS   76 (359)
Q Consensus        11 ~~~~l~~h~~~~~l~~s~~~-~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~--~~~l~   76 (359)
                      .+..+..+.+...|.-+|.. .++|+||..  ..+.+||+...+.+.+-+.-.         -.++++.|-|.  ...||
T Consensus       141 ~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fa  220 (412)
T KOG3881|consen  141 KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFA  220 (412)
T ss_pred             cceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEE
Confidence            34445555555666666643 566778888  899999999886665543211         13567889887  78999


Q ss_pred             EEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcC
Q 041916           77 LGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQ  151 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~  151 (359)
                      +++.-+.|++||++.+ .|+..+.....+++++...|+|+++++|..-+.+..||+|.++.... +   .|.|+++..+|
T Consensus       221 t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp  300 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP  300 (412)
T ss_pred             EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC
Confidence            9999999999999865 57888888888999999999999999999999999999999987666 3   68899999999


Q ss_pred             Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      .+  ++++|-|..|+|+|+.+.......|...      .++++.+.++-
T Consensus       301 ~~~~las~GLDRyvRIhD~ktrkll~kvYvKs------~lt~il~~~~~  343 (412)
T KOG3881|consen  301 THPVLASCGLDRYVRIHDIKTRKLLHKVYVKS------RLTFILLRDDV  343 (412)
T ss_pred             CCceEEeeccceeEEEeecccchhhhhhhhhc------cccEEEecCCc
Confidence            98  7778899999999988754444555544      67778777653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=7.4e-14  Score=125.17  Aligned_cols=199  Identities=15%  Similarity=0.226  Sum_probs=155.8

Q ss_pred             EeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           14 CLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        14 ~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      .++....++.+.|+..|.||++...   ...|.|+++..+.....|+-..+.|.++.|+|...+|++++. ..|++||+.
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~  595 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS  595 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh
Confidence            3444455599999999999998754   468899999887777777767788999999999988888765 469999998


Q ss_pred             CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc-eE-EEEcCCcEE
Q 041916           91 TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG-LL-AVGTGSFVQ  164 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g-l~-~~~~d~~i~  164 (359)
                      ....+..+....-.|.+++.+|.|..|+.++.|+.+..||+.-+ ++.+++   ...+++++|++.- |+ +++.||++.
T Consensus       596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            87777777666778999999999999999999999999999764 455555   5578999999988 55 555669988


Q ss_pred             EEcCC------CCC--CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          165 ILGDF------SGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       165 i~d~~------~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ||.-.      .+.  -++..+.+|.......|.++.|+|...+|++++.||.+++|
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            87521      110  13345667755334458899999999999999888887776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.4e-12  Score=121.37  Aligned_cols=198  Identities=14%  Similarity=0.104  Sum_probs=127.4

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |+++|.+|.....+..+... .+..|+|||+.|+..+.+   ..|.+||+.+++... +....+.....+|+|||+.|+.
T Consensus       200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEE
Confidence            45566556554555555555 889999999988876542   369999998876432 2222334457899999987764


Q ss_pred             -EeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEe-ccC-CceeEEE
Q 041916           78 -GHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQT-LPG-HAKTLDF  149 (359)
Q Consensus        78 -g~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~-~~~-~i~~~~~  149 (359)
                       .+.+|.  |.+||+.+++. ..+..+.......+|+|||++|+..+. +  ..|.++|+.+++.... +.+ .....+|
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~  357 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSI  357 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeE
Confidence             556665  77788877653 444455556778999999998877654 3  3577778877764332 222 3456799


Q ss_pred             cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +|+|  ++..+. ++  .|.++|+.++.  ...+....     ......|+|+|+.|+..+.++
T Consensus       358 SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~~-----~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        358 TPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTSTR-----LDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCCC-----CCCCceECCCCCEEEEEEecC
Confidence            9999  433333 34  45667765552  22222221     123457999999887766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.3e-12  Score=121.00  Aligned_cols=187  Identities=16%  Similarity=0.135  Sum_probs=122.6

Q ss_pred             eEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEE-ecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASI-NKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|+ .+|+.. .+....+ ...+.|+|||..|+.. +.+|  .|.+||+.++.... +..+...+....|+|||+.|+
T Consensus       225 i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~  302 (429)
T PRK03629        225 LVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLA  302 (429)
T ss_pred             EEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEE
Confidence            67777 555432 2322223 3678999999988754 3344  59999998887544 444445678899999999887


Q ss_pred             EEeCC-Ce--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEecc-CCceeEEE
Q 041916           77 LGHSG-GT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQTLP-GHAKTLDF  149 (359)
Q Consensus        77 sg~~d-g~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~-~~i~~~~~  149 (359)
                      ..+.+ |.  |.++|+.++.. ..+..+...+.+++|+|||++|+..+.+   ..|.+||+.++....... .......|
T Consensus       303 f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~  381 (429)
T PRK03629        303 YTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSI  381 (429)
T ss_pred             EEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceE
Confidence            77654 44  55557766543 3344444456779999999998876643   358899998876432222 23457889


Q ss_pred             cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +|||  ++.++.++   .+.++++ ++ .....+..|..    .+...+|+|-
T Consensus       382 SpDG~~i~~~s~~~~~~~l~~~~~-~G-~~~~~l~~~~~----~~~~p~Wsp~  428 (429)
T PRK03629        382 APNGTMVIYSSSQGMGSVLNLVST-DG-RFKARLPATDG----QVKFPAWSPY  428 (429)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEEC-CC-CCeEECccCCC----CcCCcccCCC
Confidence            9999  55555553   4777775 33 34455555544    6788888873

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.52  E-value=8.7e-14  Score=113.07  Aligned_cols=138  Identities=16%  Similarity=0.235  Sum_probs=110.1

Q ss_pred             CEEEEEecCCeEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cc--eE
Q 041916           31 FLLASINKFGQLRYQDVTMGE----------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA--AP--LI   96 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~--~~--~~   96 (359)
                      .+|++|-.+|.+.+||+.++.          .......|..+|.++.+.+.-..=++|+.+-.+..|+++..  .+  ..
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            356778889999999999983          33344578899999999876666677888888999987643  21  11


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      .+.-....|..+.+-||++.+||++.|+.|++|..++..++..+   .+.|++++|+|+.  +++++.|+.|.+|++
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22222345788999999999999999999999999999988777   5789999999995  777889999999985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.8e-12  Score=119.24  Aligned_cols=186  Identities=14%  Similarity=0.221  Sum_probs=121.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|| .+|.. ..+..+.+. .+++|+|||..|+ +.+.+|  .|++||+.+++. ..+..+......++|+|||+.|+
T Consensus       230 l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~  307 (433)
T PRK04922        230 IYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY  307 (433)
T ss_pred             EEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence            77888 55554 334444455 6889999998775 445454  699999988874 44555555567889999999888


Q ss_pred             EEeC-CCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEeccC-CceeEEE
Q 041916           77 LGHS-GGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTLPG-HAKTLDF  149 (359)
Q Consensus        77 sg~~-dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~-~i~~~~~  149 (359)
                      .++. +|.  |+++|+.+++. ..+..+......++|+|||++|+..+.++   .|.+||+.++.......+ ....+.|
T Consensus       308 f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~  386 (433)
T PRK04922        308 FTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSF  386 (433)
T ss_pred             EEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceE
Confidence            7664 444  66677766653 22332334455789999999998776443   699999988765432222 4567899


Q ss_pred             cCCc--eEEEEc---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee
Q 041916          150 SQKG--LLAVGT---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       150 s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      +|+|  ++..+.   .+.|.++++. + .....+..+..    .+..++|+|
T Consensus       387 spdG~~i~~~s~~~g~~~L~~~~~~-g-~~~~~l~~~~g----~~~~p~wsp  432 (433)
T PRK04922        387 APNGSMVLYATREGGRGVLAAVSTD-G-RVRQRLVSADG----EVREPAWSP  432 (433)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC-C-CceEEcccCCC----CCCCCccCC
Confidence            9999  343333   2467888753 3 23344433322    566777776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1e-11  Score=114.65  Aligned_cols=198  Identities=11%  Similarity=0.062  Sum_probs=122.1

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCE--E-EEEecC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFL--L-ASINKF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~--l-~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |++.|.+|.....+...... .+-.|||||..  + ++...+  ..|.+.++.+|+.. .+....+.....+|||||+.|
T Consensus       167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~L  245 (428)
T PRK01029        167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLL  245 (428)
T ss_pred             EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEE
Confidence            45666666666666665555 78899999864  2 233333  46888899877643 333344455678999999887


Q ss_pred             EEEeC-----CCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEEcCC-ceeeEec---
Q 041916           76 SLGHS-----GGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSG-KECK--IKIWDLRK-YEVLQTL---  140 (359)
Q Consensus        76 ~sg~~-----dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~--i~iwd~~~-~~~~~~~---  140 (359)
                      +..+.     +..+.+|++..+   .+......+.+.....+|+|||+.|+..+ .+|.  |.++++.. +.....+   
T Consensus       246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~  325 (428)
T PRK01029        246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK  325 (428)
T ss_pred             EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence            76543     223445776653   33332323334456789999999887765 4564  44445542 2222222   


Q ss_pred             cCCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          141 PGHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       141 ~~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ...+....|||+|  ++.++.+   ..|.+||+.++. . ..+.....    .+..+.|+|||+.|+..+.
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~----~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPE----NKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCC----CccceEECCCCCEEEEEEC
Confidence            3456789999999  4444332   479999976662 2 22322211    4677899999998875443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.50  E-value=1.7e-14  Score=133.63  Aligned_cols=164  Identities=22%  Similarity=0.324  Sum_probs=133.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |+||. .++.++..+++|.+- +.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.|++++|+|-.    +.+
T Consensus       214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss  289 (1113)
T KOG0644|consen  214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSS  289 (1113)
T ss_pred             eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCC
Confidence            68999 888999999999987 999999998999999999999999999999999999999999999999953    667


Q ss_pred             CCCeEEEEeCC---------------------------------------------------------------------
Q 041916           80 SGGTVTMWKPT---------------------------------------------------------------------   90 (359)
Q Consensus        80 ~dg~v~lwd~~---------------------------------------------------------------------   90 (359)
                      .||++++||.+                                                                     
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~  369 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV  369 (1113)
T ss_pred             CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccce
Confidence            88888888753                                                                     


Q ss_pred             --------------CCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC
Q 041916           91 --------------TAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK  152 (359)
Q Consensus        91 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~  152 (359)
                                    ++..++.+.+|...+..+.++| +.....+++.||...|||+-.|.+++.+   .+.+....||++
T Consensus       370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd  449 (1113)
T KOG0644|consen  370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD  449 (1113)
T ss_pred             eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence                          1111111224566677888888 5555678999999999999999888777   345778899999


Q ss_pred             c-eEEEEcC-CcEEEEcCC
Q 041916          153 G-LLAVGTG-SFVQILGDF  169 (359)
Q Consensus       153 g-l~~~~~d-~~i~i~d~~  169 (359)
                      | -++++.+ |.++|....
T Consensus       450 gts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  450 GTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             CceEecCCCCCceEEeccC
Confidence            9 5565554 889988743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.50  E-value=3.4e-12  Score=118.63  Aligned_cols=184  Identities=17%  Similarity=0.199  Sum_probs=131.2

Q ss_pred             CeEEEEECCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcc--eEEE----eccCCCeEEEEEc
Q 041916           40 GQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAAP--LIKM----LCHQGPVSALAFH  111 (359)
Q Consensus        40 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~--~~~~----~~h~~~v~~i~~~  111 (359)
                      +.+.+|++... .+-..+. ....|.|++|+|. ..+++.|+.+|.|.+||++.+..  ...+    ..|..+++.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            57999999876 3333443 4578999999995 47888899999999999987654  2222    3689999999997


Q ss_pred             CC--CCEEEEEeCCCeEEEEEcCCcee-eEec--------------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCC-
Q 041916          112 PN--GHLMATSGKECKIKIWDLRKYEV-LQTL--------------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFS-  170 (359)
Q Consensus       112 ~~--~~~l~~~~~d~~i~iwd~~~~~~-~~~~--------------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~-  170 (359)
                      .+  +.-+++++.||.|..|+++.... +...              ...++++.|.|..   +++|+.+|.|.--+... 
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            64  34499999999999999987432 1111              1346899998866   78888889888743221 


Q ss_pred             --CC----CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------------------------
Q 041916          171 --GS----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI--------------------------------  212 (359)
Q Consensus       171 --~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i--------------------------------  212 (359)
                        ..    +....+..|    .++|+++.++|.+.-++..+.|..++|                                
T Consensus       381 ~~~~~~~~~~~~~~~~h----~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav  456 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITH----IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV  456 (555)
T ss_pred             ccccccccccccccccc----CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence              21    112233334    449999999999875555444665444                                


Q ss_pred             EEcCCCCCccccccCC
Q 041916          213 LVPGSGEPNFDSWVAN  228 (359)
Q Consensus       213 ~~~~~~d~~~~~~~~~  228 (359)
                      |+++.++|++.+||+.
T Consensus       457 F~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  457 FATVDGDGNLDIWDLL  472 (555)
T ss_pred             EEEEcCCCceehhhhh
Confidence            6777889999999984

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.4e-13  Score=122.36  Aligned_cols=160  Identities=13%  Similarity=0.206  Sum_probs=122.9

Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP--NGHLMATSGKECKIKIWD  130 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd  130 (359)
                      ..+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||+-..+++..+. +|...|.++.|-|  +...+++|..|..|++||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            5678999999999999999999999999999999998888888876 8999999999999  556789999999999999


Q ss_pred             cCCce----------eeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccc------eeecccCCCCcc
Q 041916          131 LRKYE----------VLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYS------RYMGHSMVKGYQ  188 (359)
Q Consensus       131 ~~~~~----------~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~  188 (359)
                      +...+          ....+   ...|..|+..|++   +.+++.||+|+-||++....+..      .+..... ..-.
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-~lie  202 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-QLIE  202 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch-hhhe
Confidence            98521          22222   3457778888888   88999999999999876322111      1111100 1124


Q ss_pred             eEEEEEeeCC-CEEEEEcCCCeEEEEE
Q 041916          189 IGKVSFRPYE-DVLGIGHSMGWSSILV  214 (359)
Q Consensus       189 v~~~~~~p~~-~~l~~~~~dg~~~i~~  214 (359)
                      ..++..+|.. .+|++|+.+-+.+++.
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhh
Confidence            6778888865 4688888887766654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.6e-12  Score=119.11  Aligned_cols=187  Identities=14%  Similarity=0.215  Sum_probs=117.8

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCCeEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFGQLRYQ--DVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|| .+|... .+....+. .+.+|+|||..|+ +.+.+|...||  |+.++. ...+..+.+......|+|||+.|+
T Consensus       222 I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~  299 (427)
T PRK02889        222 VYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY  299 (427)
T ss_pred             EEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence            78899 666543 34333344 7899999998776 45667765555  454444 455555555667789999999877


Q ss_pred             EEeC-CCeEEEEeC--CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEec-cCCceeEEE
Q 041916           77 LGHS-GGTVTMWKP--TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTL-PGHAKTLDF  149 (359)
Q Consensus        77 sg~~-dg~v~lwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~  149 (359)
                      ..+. +|...+|.+  .++.. ..+..+.......+|+|||++|+.++.++   .|.+||+.++...... ......+.|
T Consensus       300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~  378 (427)
T PRK02889        300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSF  378 (427)
T ss_pred             EEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceE
Confidence            6654 456666654  44432 22222233345689999999998877654   6999999887654333 224578899


Q ss_pred             cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +|+|  ++.++. +|  .+.+.+. .+ .....+..+.+    .+...+|+|.
T Consensus       379 spdg~~l~~~~~~~g~~~l~~~~~-~g-~~~~~l~~~~g----~~~~p~wsp~  425 (427)
T PRK02889        379 APNGRYILYATQQGGRSVLAAVSS-DG-RIKQRLSVQGG----DVREPSWGPF  425 (427)
T ss_pred             CCCCCEEEEEEecCCCEEEEEEEC-CC-CceEEeecCCC----CCCCCccCCC
Confidence            9999  444443 33  4566664 33 33334433322    5677788774

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.49  E-value=4.7e-13  Score=112.14  Aligned_cols=184  Identities=17%  Similarity=0.271  Sum_probs=130.0

Q ss_pred             EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEEecc
Q 041916           23 KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-LGHSGGTVTMWKPTTAAPLIKMLCH  101 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-sg~~dg~v~lwd~~~~~~~~~~~~h  101 (359)
                      -.+|||+|+++|+++.- .+.|-|..+-+..+.+.. -..|.-+.|..|..+++ ....|+.|.+|++.+.+-..+++..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            46899999999999866 888889877665444433 35677889998876555 4578899999999998888888888


Q ss_pred             CCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEc------------------
Q 041916          102 QGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGT------------------  159 (359)
Q Consensus       102 ~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~------------------  159 (359)
                      +.++.+++|||||+.| .+..-|-.|.+|.+.+.+....-  ...+..++|+|+| +.+...                  
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            8899999999999664 55666889999999886654332  4456777888887 443321                  


Q ss_pred             -------------------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          160 -------------------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       160 -------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                                         ++.+.+||..-.   ...+.-+   .+-.+..+.|+|.+++|++|+.|+..+++.
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhh---heeeeee---eccceeEEEeccccceEEeeccchhhhhhc
Confidence                               122334441111   1112222   222578889999999999988888776643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.4e-12  Score=111.63  Aligned_cols=157  Identities=13%  Similarity=0.232  Sum_probs=124.4

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916           55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT------TAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIK  127 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~  127 (359)
                      -+.+|.+.|+++.|+.++++|++|+.|..+.+|.+.      +.+++..+. .|.+.|.|++|+....++++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            356899999999999999999999999999999974      446666655 4668999999999999999999999999


Q ss_pred             EEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-
Q 041916          128 IWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-  199 (359)
Q Consensus       128 iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-  199 (359)
                      +.|+.+.+.+..+     .+.|..+..+|..  +++++.++.|.+||.+........+..-.  .+....++-|+|... 
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHPETPA  208 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecCCCce
Confidence            9999998888777     3579999999977  77778889999999876644444443222  344788999999875 


Q ss_pred             EEEEEcCCCeEEEE
Q 041916          200 VLGIGHSMGWSSIL  213 (359)
Q Consensus       200 ~l~~~~~dg~~~i~  213 (359)
                      +|++++..|-..+|
T Consensus       209 Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  209 LILVNSETGGPNVF  222 (609)
T ss_pred             eEEeccccCCCCce
Confidence            44555555433443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=5.6e-11  Score=109.15  Aligned_cols=198  Identities=11%  Similarity=-0.006  Sum_probs=126.7

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCCE-EEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFL-LASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++-|.+|.....+..........|+|||+. ++..+.   ...|.++|+.+|+..... ...+......|+|||..|+.
T Consensus       171 l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~  249 (419)
T PRK04043        171 IVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLL  249 (419)
T ss_pred             EEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEE
Confidence            4455566665555555442388999999974 554333   357999999888754433 34556677889999976654


Q ss_pred             E-eC--CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEeccCCceeEEEcC
Q 041916           78 G-HS--GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTLPGHAKTLDFSQ  151 (359)
Q Consensus        78 g-~~--dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~i~~~~~s~  151 (359)
                      . +.  +..|.++|+.++. ...+..+.+......|+|||+.|+..+.. +  .|.++|+.++..............|||
T Consensus       250 ~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SP  328 (419)
T PRK04043        250 TMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVST  328 (419)
T ss_pred             EEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECC
Confidence            3 33  3568888887775 34444444444567899999988776642 2  688889988766443322222358999


Q ss_pred             Cc--eEEEEcC---------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          152 KG--LLAVGTG---------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       152 ~g--l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +|  ++..+..         ..|.+.|+.++.  ...+....     ......|+|||+.++..+..+
T Consensus       329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANG-----VNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCC-----CcCCeEECCCCCEEEEEEccC
Confidence            99  4333322         368888876652  23333221     233588999999887766554

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=1.1e-11  Score=103.47  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=106.5

Q ss_pred             eEEEe--CCCcEEEEeccCCCe-EEEEEec--CCCEEEE-EecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN--RDGTELHCLKEHGAV-LKLQFLR--NHFLLAS-INKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~--~~~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      |+||.  .+-+.++.+..-..+ --++..|  +..+||. |-.-|.|+|-|+...+.  ...+.+|.+.|.|++.+-+|.
T Consensus       115 I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt  194 (346)
T KOG2111|consen  115 IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT  194 (346)
T ss_pred             EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc
Confidence            67888  355667777665555 2233344  3445554 33469999999986554  477889999999999999999


Q ss_pred             EEEEEeCCCe-EEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           74 VVSLGHSGGT-VTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        74 ~l~sg~~dg~-v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      ++|++|..|+ |+|||..+|..+..+..  ....|.+|+|||++.+|+++|.-|+|.+|.++..
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999998 89999999999999873  3446999999999999999999999999998763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=1.8e-11  Score=102.72  Aligned_cols=104  Identities=18%  Similarity=0.300  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee
Q 041916          105 VSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       105 v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~  178 (359)
                      +.-++|++|..+++|-..  -..+.+||++..+....+  ..+|....|+|..  ++.+.....+++|.+ .+...+   
T Consensus       321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p-sg~~~V---  396 (447)
T KOG4497|consen  321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-SGPRVV---  396 (447)
T ss_pred             cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC-CCceEE---
Confidence            567999999999998764  357999999987765554  6799999999988  777777789999984 331221   


Q ss_pred             ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       +.+. .+..|..++|.-+|..++..+.|.+..-++
T Consensus       397 -~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc~a~v  430 (447)
T KOG4497|consen  397 -GVPK-KGFNIQKLQWLQPGEFIVLCGKDAFCVAIV  430 (447)
T ss_pred             -ecCC-CCceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence             1112 345899999999999999999998655544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.1e-11  Score=111.37  Aligned_cols=172  Identities=15%  Similarity=0.165  Sum_probs=137.7

Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeEEEEEec---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 041916           28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRT---GLGRTDVMRVN------P--------------FNGVVSLGHSGGTV   84 (359)
Q Consensus        28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s------p--------------~~~~l~sg~~dg~v   84 (359)
                      |...++|....||.++|||+..++....|..   -.+..++..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4467899999999999999999887666642   22445555552      2              23467888899999


Q ss_pred             EEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEEc
Q 041916           85 TMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVGT  159 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~~  159 (359)
                      .+|++..++.-..+.  .|.+.|+++.++.+-..|++++.|+.+..|+......+..+   +..+.+++++|||-+.+..
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999998877776  79999999999999999999999999999999998888877   3468999999999323333


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-----CCEEEEE
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-----EDVLGIG  204 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~  204 (359)
                      .+.|.+||+.+. +.+..+.+|..    +|.++.|...     |.++.++
T Consensus       163 s~~ik~~~~~~k-evv~~ftgh~s----~v~t~~f~~~~~g~~G~~vLss  207 (541)
T KOG4547|consen  163 SRQIKVLDIETK-EVVITFTGHGS----PVRTLSFTTLIDGIIGKYVLSS  207 (541)
T ss_pred             cceEEEEEccCc-eEEEEecCCCc----ceEEEEEEEeccccccceeeec
Confidence            579999998776 78888888866    9999999887     5555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=5.8e-12  Score=112.80  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=127.4

Q ss_pred             CCCe-EEEEEecCCCEE-EEEecCCeEEEEECCCCeEEE----------------------------EEecCC-------
Q 041916           18 HGAV-LKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVG----------------------------NFRTGL-------   60 (359)
Q Consensus        18 h~~~-~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~----------------------------~~~~~~-------   60 (359)
                      |..+ +.|..+|||+|+ |||..--.|++||+..-....                            .+.-|.       
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~  129 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR  129 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence            5556 999999999875 667778899999987432110                            011111       


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916           61 ----GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV  136 (359)
Q Consensus        61 ----~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~  136 (359)
                          .....|+++.-..-|++++....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|-.||.|+...
T Consensus       130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr  209 (703)
T KOG2321|consen  130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR  209 (703)
T ss_pred             eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence                0122344443333355555666788899999998888887788999999999999999999999999999998665


Q ss_pred             eEec---------cC-----CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          137 LQTL---------PG-----HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       137 ~~~~---------~~-----~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +..+         ++     .|+++.|+.+|  +.+|+..|.+.|||++...+.+.  ..|.  ...+|..+.|.+.
T Consensus       210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~--~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--KDHG--YELPIKKLDWQDT  282 (703)
T ss_pred             heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee--cccC--Cccceeeeccccc
Confidence            5544         12     38999999999  66677889999999987744333  3332  2448999999776

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=3.6e-11  Score=108.44  Aligned_cols=169  Identities=13%  Similarity=0.145  Sum_probs=119.3

Q ss_pred             CEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916           31 FLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA  109 (359)
Q Consensus        31 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~  109 (359)
                      +++ ++-..++.|.+.|..+.+.+..+.........+.|+|||+++++++.||.|.++|+.+.+.+.++..... ..+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            455 4455689999999999999999987655555688999999999999999999999999999988876544 57899


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEEcCCceeeEecc----------CCceeEEEcCCc--eEEEEcC-CcEEEEcCCCCCCcc
Q 041916          110 FHPNGHLMATSG-KECKIKIWDLRKYEVLQTLP----------GHAKTLDFSQKG--LLAVGTG-SFVQILGDFSGSHNY  175 (359)
Q Consensus       110 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~----------~~i~~~~~s~~g--l~~~~~d-~~i~i~d~~~~~~~~  175 (359)
                      +++||+++++++ .++.+.++|..+.+++..++          ..+..+..+|..  +++.-.+ +.|.+.|........
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999988776 58999999999999988772          135677778877  4444444 788888865542222


Q ss_pred             ceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      ......    +....+..|+|++++++++
T Consensus       165 ~~~i~~----g~~~~D~~~dpdgry~~va  189 (369)
T PF02239_consen  165 VTTIKV----GRFPHDGGFDPDGRYFLVA  189 (369)
T ss_dssp             EEEEE------TTEEEEEE-TTSSEEEEE
T ss_pred             eeeecc----cccccccccCcccceeeec
Confidence            222222    2267889999999987765

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.43  E-value=9.7e-11  Score=105.66  Aligned_cols=169  Identities=18%  Similarity=0.248  Sum_probs=123.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |.|.| .+.+.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||+++++++
T Consensus        18 v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   18 VAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             EEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEE
T ss_pred             EEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEe
Confidence            67889 788899999887777 778899999999999999999999999999999998764 467899999999888775


Q ss_pred             -CCCeEEEEeCCCCcceEEEecc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeE--ec--cCCcee
Q 041916           80 -SGGTVTMWKPTTAAPLIKMLCH-------QGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQ--TL--PGHAKT  146 (359)
Q Consensus        80 -~dg~v~lwd~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~--~~--~~~i~~  146 (359)
                       .++.+.++|..+.+++..+...       .+.+.+|..+|....++..-. .+.|.+.|......+.  .+  ......
T Consensus        97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D  176 (369)
T PF02239_consen   97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD  176 (369)
T ss_dssp             EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred             cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence             6899999999999988887632       346778888898886655554 4889888987754332  22  345788


Q ss_pred             EEEcCCc--eEEEE-cCCcEEEEcCCCC
Q 041916          147 LDFSQKG--LLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus       147 ~~~s~~g--l~~~~-~d~~i~i~d~~~~  171 (359)
                      ..|+|++  ++++. ..+.|-++|..++
T Consensus       177 ~~~dpdgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  177 GGFDPDGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             cccCcccceeeecccccceeEEEeeccc
Confidence            9999999  44443 4579999997665

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.8e-11  Score=111.73  Aligned_cols=160  Identities=15%  Similarity=0.132  Sum_probs=113.4

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL  116 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  116 (359)
                      ..|.++|.. |.....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            478999985 4445667778889999999999998887763   46899999988765 345556777889999999998


Q ss_pred             EE-EEeCCC--eEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEc-C--CcEEEEcCCCCCCccceeecccCCCC
Q 041916          117 MA-TSGKEC--KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGT-G--SFVQILGDFSGSHNYSRYMGHSMVKG  186 (359)
Q Consensus       117 l~-~~~~d~--~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~  186 (359)
                      |+ +.+.++  .|++||+.++......  .+.....+|+|+|  ++.++. +  ..|++||+..+ . ...+..+..   
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~---  334 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-N-PRRISFGGG---  334 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-C-eEEeecCCC---
Confidence            75 445555  4888899887654332  3345789999999  444442 2  36888886443 2 233332222   


Q ss_pred             cceEEEEEeeCCCEEEEEcCC
Q 041916          187 YQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       187 ~~v~~~~~~p~~~~l~~~~~d  207 (359)
                       .+..+.|+|+|+.|+..+.+
T Consensus       335 -~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        335 -RYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             -cccCeEECCCCCEEEEEEcC
Confidence             46678999999999876643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.2e-10  Score=104.25  Aligned_cols=210  Identities=14%  Similarity=0.178  Sum_probs=136.6

Q ss_pred             eEEEeCC--CcEEEEeccCCCeEEEEEecC--CCEEEE-----EecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEc
Q 041916            2 PYIYNRD--GTELHCLKEHGAVLKLQFLRN--HFLLAS-----INKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVN   69 (359)
Q Consensus         2 v~iwd~~--g~~~~~l~~h~~~~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s   69 (359)
                      |++|+..  ....+.|. -.+++.+++||.  ...+|+     .|.-+.|+||.+.....-..+   .-....-..+.|+
T Consensus       148 v~f~~~~~f~~~~~kl~-~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN  226 (566)
T KOG2315|consen  148 VQFYDLGSFKTIQHKLS-VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN  226 (566)
T ss_pred             EEEEecCCccceeeeee-ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence            5677722  22333333 234577788875  345554     455678999998632211111   0011223468898


Q ss_pred             CCCC-EEEEEe--CC---------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCce
Q 041916           70 PFNG-VVSLGH--SG---------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--KECKIKIWDLRKYE  135 (359)
Q Consensus        70 p~~~-~l~sg~--~d---------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~  135 (359)
                      +-|. +|+.++  -|         .++++.++........+ ...++|.++.|+|+|+-++++-  .-..+.+||++ +.
T Consensus       227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~  304 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK  304 (566)
T ss_pred             cCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CC
Confidence            8775 333333  22         36888887743444443 3479999999999998876654  45689999998 57


Q ss_pred             eeEec-cCCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          136 VLQTL-PGHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       136 ~~~~~-~~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      ++..+ +++-+++-|+|.|  ++.+|.+   |.|.|||..+ .+.+..+...      .-+-+.|+|||.++++++..-.
T Consensus       305 ~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~------~tt~~eW~PdGe~flTATTaPR  377 (566)
T KOG2315|consen  305 PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA------NTTVFEWSPDGEYFLTATTAPR  377 (566)
T ss_pred             EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC------CceEEEEcCCCcEEEEEecccc
Confidence            88888 7788999999999  5566654   8999999776 3566655544      4566899999999999887643


Q ss_pred             EEEEEcCCCCCccccccC
Q 041916          210 SSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       210 ~~i~~~~~~d~~~~~~~~  227 (359)
                      .++      |+.++||++
T Consensus       378 lrv------dNg~Kiwhy  389 (566)
T KOG2315|consen  378 LRV------DNGIKIWHY  389 (566)
T ss_pred             EEe------cCCeEEEEe
Confidence            332      445555554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.4e-11  Score=110.50  Aligned_cols=191  Identities=13%  Similarity=0.088  Sum_probs=116.3

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-----CCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCC
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-----FGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      |++.+..+.....+....+. ...+|||||+.|+..+.     +..+.+|++..+   ........+.+.....+|+|||
T Consensus       213 I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        213 IFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             EEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence            45556222223333333343 67899999988876553     223445777653   3333333333445678999999


Q ss_pred             CEEEEEe-CCCeEEEE--eCCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEec--cCC
Q 041916           73 GVVSLGH-SGGTVTMW--KPTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQTL--PGH  143 (359)
Q Consensus        73 ~~l~sg~-~dg~v~lw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~--~~~  143 (359)
                      ..|+..+ .+|...+|  ++.. +.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.....  ...
T Consensus       293 ~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~  372 (428)
T PRK01029        293 TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN  372 (428)
T ss_pred             CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC
Confidence            9777665 46655555  4432 23344454455667889999999998877643   47999999988654333  235


Q ss_pred             ceeEEEcCCc--eEEEE-c--CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          144 AKTLDFSQKG--LLAVG-T--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      +..+.|+|+|  ++..+ .  ...|+++|+..+ .. ..+....+    .+...+|+|..
T Consensus       373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g-~~-~~Lt~~~g----~~~~p~Ws~~~  426 (428)
T PRK01029        373 KESPSWAIDSLHLVYSAGNSNESELYLISLITK-KT-RKIVIGSG----EKRFPSWGAFP  426 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCC-CE-EEeecCCC----cccCceecCCC
Confidence            6789999999  43333 2  357888887554 22 22322222    46677888754

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=9e-10  Score=97.42  Aligned_cols=210  Identities=14%  Similarity=0.124  Sum_probs=141.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec----------CCeEEEEECCCCeEEEEEecCCC-------C
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK----------FGQLRYQDVTMGEIVGNFRTGLG-------R   62 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~   62 (359)
                      .|++.| .+++.+.++.....+..+ +|||++.|+++..          +..|.+||+.+++.+..+.....       .
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            367888 777888888877777656 9999988877665          78999999999999988875322       2


Q ss_pred             eEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcceEEEecc------------------CC-------------CeEEE-
Q 041916           63 TDVMRVNPFNGVVSLGH-S-GGTVTMWKPTTAAPLIKMLCH------------------QG-------------PVSAL-  108 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~-~-dg~v~lwd~~~~~~~~~~~~h------------------~~-------------~v~~i-  108 (359)
                      ...++++|||++|++.. . +..|.+.|+.+++.+..+...                  .+             .+... 
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence            34789999999888766 3 688999999877655433210                  00             01111 


Q ss_pred             -------------EEcC-CCCEEEEEeCCCeEEEEEcCCc-----eeeEec----------cCCceeEEEcCCc--eEEE
Q 041916          109 -------------AFHP-NGHLMATSGKECKIKIWDLRKY-----EVLQTL----------PGHAKTLDFSQKG--LLAV  157 (359)
Q Consensus       109 -------------~~~~-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~----------~~~i~~~~~s~~g--l~~~  157 (359)
                                   .|.+ +|.++++... |+|.+.|+...     .....+          ++...-++++|+|  +++.
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence                         1223 7777766665 99999996442     233222          1223459999998  4443


Q ss_pred             E----------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCCC
Q 041916          158 G----------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGSG  218 (359)
Q Consensus       158 ~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~~  218 (359)
                      .          ..+.|.++|..+.........++      .+..++++||++ .|++.. .++.++++...+.
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            2          22589999987763333333344      799999999999 776655 4566666665443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.38  E-value=3.2e-11  Score=99.82  Aligned_cols=183  Identities=14%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-ceEE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAA-PLIK   97 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~-~~~~   97 (359)
                      .++.|++.+..++++..+|.+.+-+......  ++.++.|.-+++...|+... +++.+|+.||.+..||++... .+..
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            6788899888899999999998666555543  34788999999999998644 789999999999999999433 3332


Q ss_pred             -EeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-ceeeEec--cCCceeEEEcCCc---eEEEEcCCcEEEEcCC
Q 041916           98 -MLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-YEVLQTL--PGHAKTLDFSQKG---LLAVGTGSFVQILGDF  169 (359)
Q Consensus        98 -~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~  169 (359)
                       ...|...|.+|.-+| .+.+|+||+.|-.|++||.|+ ++++..-  .|.|..+.++|.-   +++++.-+-.+|-+..
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence             446888899998887 688999999999999999994 7787655  5789999999965   5666665556666644


Q ss_pred             CCCCcc-ceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          170 SGSHNY-SRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       170 ~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      .+.... ..+..+.. +.+-+..-.|.....+|++++
T Consensus       285 ~~~~e~~~~~~s~~~-hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  285 DKVLEFQIVLPSDKI-HDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             ccccchheeeecccc-ccceeeccccccccceeeeee
Confidence            432221 12333332 333455555544345566644

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.37  E-value=2.6e-11  Score=115.57  Aligned_cols=176  Identities=16%  Similarity=0.266  Sum_probs=137.4

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCC----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG----RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV  105 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v  105 (359)
                      ...++.+..+..+.+||...+..+..+....-    +..-+.++++.-++++|+.-+.|.+|++...+....+.+|.+.|
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            45677777788999999987776665553221    22234456777899999999999999988444444678999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--ec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916          106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--TL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGH  181 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~  181 (359)
                      .++.|+-||++++++|.|.++++|++.+.+...  .|  ++.+..++|+|..+++++.|-++++|+ ..+ ..+..|..|
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~-~~~-~~l~~y~~h  256 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWG-VNG-TQLEVYDEH  256 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEe-ccc-ceehhhhhh
Confidence            999999999999999999999999999977654  22  567899999999899999999999996 333 566688888


Q ss_pred             cCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          182 SMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       182 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                         .+..++.++..++...+++++.||.+
T Consensus       257 ---~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  257 ---SGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             ---hhcceeEEEEcCCceEEEeeccCcch
Confidence               34579999999988666665555543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=2e-11  Score=116.36  Aligned_cols=166  Identities=13%  Similarity=0.157  Sum_probs=131.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe--E---EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV--L---KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~--~---~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      +.||| ..+..+..+.....+  .   -+-++++.-++++|+.-+.|.+|+....+....+.+|.+.|..+.|+-||.++
T Consensus       111 ~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i  190 (967)
T KOG0974|consen  111 LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYI  190 (967)
T ss_pred             EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEE
Confidence            45677 445554444443332  2   22345667789999999999999998444444688999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFS  150 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s  150 (359)
                      ++.|.|.++++|++.+.+... ..-+|+..|..+.|+|.  .++|++.|.+.++|+... ..+..+    ...+..++..
T Consensus       191 ~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~  267 (967)
T KOG0974|consen  191 ASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVP  267 (967)
T ss_pred             EEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEc
Confidence            999999999999999887655 55689999999999998  999999999999996653 333344    3468888988


Q ss_pred             CCc--eEEEEcCCcEEEEcCCC
Q 041916          151 QKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       151 ~~g--l~~~~~d~~i~i~d~~~  170 (359)
                      ++.  .++++.|+.+++|++..
T Consensus       268 ~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  268 IGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             CCceEEEeeccCcchhhhhhhc
Confidence            888  78889999999999654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=5.9e-12  Score=110.66  Aligned_cols=208  Identities=15%  Similarity=0.154  Sum_probs=158.8

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEe
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFN--GVVSLGHSGGTVTMWK   88 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~l~sg~~dg~v~lwd   88 (359)
                      ..|..|.+. +.+.|+..|..|++|+.|..|.+||...+.....+. +|...|..-.|-|..  ..+++++.||.|++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            557789997 999999999999999999999999999988776665 687888888888853  6799999999999877


Q ss_pred             CCCCc-c--eEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec------cC---CceeEEEcCCc--
Q 041916           89 PTTAA-P--LIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL------PG---HAKTLDFSQKG--  153 (359)
Q Consensus        89 ~~~~~-~--~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~------~~---~i~~~~~s~~g--  153 (359)
                      +.... .  ...+..|.++|.-++.-|+..+ |++++.|+.+.-+|++...+...+      ..   ....++..|..  
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            54332 2  3345579999999999996655 999999999999999987664444      11   34788888876  


Q ss_pred             -eEEEEcCCcEEEEcCCCCCC-----ccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916          154 -LLAVGTGSFVQILGDFSGSH-----NYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP  220 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~  220 (359)
                       +.+++.|-.+++||.+.-..     .+..+..|..  .....|++++|+.++.-|.++..|-.+.+|...-++|
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence             67788899999999654211     1222222211  0223699999998888888888888888886665665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.7e-10  Score=107.47  Aligned_cols=187  Identities=10%  Similarity=0.085  Sum_probs=116.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|| .+|.. ..+....+. ...+|+|||+.|+. .+.+|  .|.+||+.++... .+..+........|+|||..|+
T Consensus       225 l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~  302 (430)
T PRK00178        225 IFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLY  302 (430)
T ss_pred             EEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEE
Confidence            67778 55544 333333343 67899999988764 44444  6888999887643 4555555667789999998777


Q ss_pred             EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec-cCCceeEEE
Q 041916           77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL-PGHAKTLDF  149 (359)
Q Consensus        77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~-~~~i~~~~~  149 (359)
                      ..+. +|  .|+++|+.+++... +...........|+|||++|+..+.+ +  .|.+||+.++...... ........|
T Consensus       303 f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~  381 (430)
T PRK00178        303 FTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSV  381 (430)
T ss_pred             EEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceE
Confidence            6553 33  57778887776432 22222234467899999999877653 2  5889999887543222 223346789


Q ss_pred             cCCc--eEEEE-cC--CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          150 SQKG--LLAVG-TG--SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       150 s~~g--l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +|+|  ++..+ .+  ..|.++++. + .....+..+.+    .+...+|+|.
T Consensus       382 spdg~~i~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g----~~~~p~ws~~  428 (430)
T PRK00178        382 APNGTMLIYATRQQGRGVLMLVSIN-G-RVRLPLPTAQG----EVREPSWSPY  428 (430)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCC----CcCCCccCCC
Confidence            9999  33333 33  356677653 2 23333333322    5666777763

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.2e-10  Score=101.47  Aligned_cols=215  Identities=10%  Similarity=0.112  Sum_probs=137.6

Q ss_pred             eEEEe-CCCcEEEEeccCCC---e-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGA---V-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~---~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +.||| .+|.....|....+   . .-+.||.|++++|--..+ +|.||+..+..++..-.-....|....|+|.+++||
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            78999 99999887776332   3 567999999999887665 799999776443322222345677777888776666


Q ss_pred             EEeC--C---CeEEEEe----------------------------------------------------CCCCcceEEEe
Q 041916           77 LGHS--G---GTVTMWK----------------------------------------------------PTTAAPLIKML   99 (359)
Q Consensus        77 sg~~--d---g~v~lwd----------------------------------------------------~~~~~~~~~~~   99 (359)
                      .=..  +   ..+.|..                                                    ++.........
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v  442 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV  442 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence            4211  0   0111111                                                    11111000001


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCC----ceeeEec-cCCceeEEEcCCc-e-EEE---EcCCcEEEE
Q 041916          100 CHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRK----YEVLQTL-PGHAKTLDFSQKG-L-LAV---GTGSFVQIL  166 (359)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~----~~~~~~~-~~~i~~~~~s~~g-l-~~~---~~d~~i~i~  166 (359)
                      .-...|...+|.|.|+.+++-+..   .++.+|-+.+    .+.+..+ ....+.+.|+|.| + +++   |..|.+.++
T Consensus       443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence            124467889999999988776543   4788888773    2344555 4567999999999 3 332   357899999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                      |+............|.     ..+.+.|.|.|+|++++++.+      ...-|..+++|+..
T Consensus       523 D~~~a~~k~~~~~eh~-----~at~veWDPtGRYvvT~ss~w------rhk~d~GYri~tfq  573 (698)
T KOG2314|consen  523 DTDYADLKDTASPEHF-----AATEVEWDPTGRYVVTSSSSW------RHKVDNGYRIFTFQ  573 (698)
T ss_pred             ecchhhhhhccCcccc-----ccccceECCCCCEEEEeeehh------hhccccceEEEEee
Confidence            9764322233334443     478899999999999987754      34457778888764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.32  E-value=6.4e-09  Score=93.79  Aligned_cols=196  Identities=14%  Similarity=0.123  Sum_probs=125.4

Q ss_pred             CCeEEEEEecCCCEEEEEec-CCeEEEEECCC-CeEEEE---Ee----------cCCCCeEEEEEcCCCCEEEEEe-CCC
Q 041916           19 GAVLKLQFLRNHFLLASINK-FGQLRYQDVTM-GEIVGN---FR----------TGLGRTDVMRVNPFNGVVSLGH-SGG   82 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~sp~~~~l~sg~-~dg   82 (359)
                      ..+..++++|++.+|+++.. +|.|.++++.. |.....   +.          .....++++.|+|+++++++.. ...
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            34588999999999988864 89999999987 443322   21          1124578999999999877754 344


Q ss_pred             eEEEEeCCCCcc-e---EEEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC--Cce--eeEec---c----C--C
Q 041916           83 TVTMWKPTTAAP-L---IKML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR--KYE--VLQTL---P----G--H  143 (359)
Q Consensus        83 ~v~lwd~~~~~~-~---~~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~---~----~--~  143 (359)
                      .|.+|++..... +   ..+. .....-+.++|+|+++++++.+ .+++|.+|++.  ++.  .+..+   +    +  .
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            799999876541 2   2222 2223468899999999987765 47789999998  442  22222   1    1  4


Q ss_pred             ceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC-CeEEEEEc
Q 041916          144 AKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM-GWSSILVP  215 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g~~~i~~~  215 (359)
                      ...|.++|+|  ++++. ..+.|.+|++......+........ .+.....++++|+|++|+++..+ +.+.+|..
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            6789999999  44444 4579999997432222322222111 23358999999999998877644 45555543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.9e-10  Score=105.91  Aligned_cols=187  Identities=10%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|| .+|+. ..+....+. ...+|+|||+.|+. .+.+|  .|.++|+.+++. ..+..+.......+|+|||+.|+
T Consensus       244 L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~  321 (448)
T PRK04792        244 IFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLI  321 (448)
T ss_pred             EEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence            67788 55543 333333333 67899999987765 45555  488889887764 34444555667889999998877


Q ss_pred             EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEeccC-CceeEEE
Q 041916           77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTLPG-HAKTLDF  149 (359)
Q Consensus        77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~-~i~~~~~  149 (359)
                      ..+. +|  .|.++|+.+++... +..........+|+|||++|+..+.+ +  .|.++|+.++........ ......|
T Consensus       322 f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~  400 (448)
T PRK04792        322 FTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSV  400 (448)
T ss_pred             EEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceE
Confidence            6553 33  46677877765432 22222233457999999998876653 3  566678887764322222 2345689


Q ss_pred             cCCc--eE-EEEcCC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          150 SQKG--LL-AVGTGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       150 s~~g--l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +|+|  ++ +...++  .+++++. ++ .....+..+..    .+...+|+|.
T Consensus       401 spdG~~I~~~~~~~g~~~l~~~~~-~G-~~~~~l~~~~g----~~~~p~Wsp~  447 (448)
T PRK04792        401 APNGTMVIYSTTYQGKQVLAAVSI-DG-RFKARLPAGQG----EVKSPAWSPF  447 (448)
T ss_pred             CCCCCEEEEEEecCCceEEEEEEC-CC-CceEECcCCCC----CcCCCccCCC
Confidence            9999  33 333444  4677774 33 33444433322    5677788773

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=3.4e-10  Score=105.11  Aligned_cols=163  Identities=17%  Similarity=0.229  Sum_probs=110.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |++|| .+|.... +..+.+. .+++|+|||+.|+. .+.+  ..|.+||+.++.. ..+..+........|+|+|..|+
T Consensus       216 i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~  293 (417)
T TIGR02800       216 IYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIA  293 (417)
T ss_pred             EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEE
Confidence            67888 5665433 3344444 77999999987754 4443  3699999987754 34444555556789999999887


Q ss_pred             EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEec-cCCceeEEE
Q 041916           77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTL-PGHAKTLDF  149 (359)
Q Consensus        77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~  149 (359)
                      ..+. +|  .|++||+.+++. ..+..+...+..+.|+|+|++|+.++.++   .|.+||+.++...... ........|
T Consensus       294 ~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~  372 (417)
T TIGR02800       294 FTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF  372 (417)
T ss_pred             EEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence            6654 33  588888876653 34444556677899999999999888776   8999999875432222 234566789


Q ss_pred             cCCc--eEEEEcC---CcEEEEc
Q 041916          150 SQKG--LLAVGTG---SFVQILG  167 (359)
Q Consensus       150 s~~g--l~~~~~d---~~i~i~d  167 (359)
                      +|+|  ++.++.+   ..+.+++
T Consensus       373 spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       373 APNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CCCCCEEEEEEeCCCcEEEEEEE
Confidence            9999  4444433   2455555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=5.6e-11  Score=104.63  Aligned_cols=211  Identities=18%  Similarity=0.254  Sum_probs=154.3

Q ss_pred             eEEEe-CCCcEEEEec-cCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe-E--EEEEecCCCCeEEEEEcCCC-
Q 041916            2 PYIYN-RDGTELHCLK-EHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE-I--VGNFRTGLGRTDVMRVNPFN-   72 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~-~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~sp~~-   72 (359)
                      |.+|| ..+.....+. +|..- ..-.|-|.  ...+++++.||.|++=.+.... +  ...+..|.++|+-++.-|+. 
T Consensus       166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp  245 (559)
T KOG1334|consen  166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP  245 (559)
T ss_pred             EEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence            67899 7777655554 56553 55567774  4679999999999988775432 2  34456799999999999976 


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEe---ccCC---CeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce------eeEe
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKML---CHQG---PVSALAFHPNGH-LMATSGKECKIKIWDLRKYE------VLQT  139 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~---~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~------~~~~  139 (359)
                      ..|.+++.|+.|.-+|+++..+...+.   .+..   ...+|+.+|... .+++++.|-.+++||.+...      ++..
T Consensus       246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~  325 (559)
T KOG1334|consen  246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK  325 (559)
T ss_pred             CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence            568899999999999999887655443   2333   567899999655 79999999999999998632      2233


Q ss_pred             c---------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC------------CccceeecccCCCCcceEEEEE-e
Q 041916          140 L---------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS------------HNYSRYMGHSMVKGYQIGKVSF-R  195 (359)
Q Consensus       140 ~---------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~v~~~~~-~  195 (359)
                      +         +..|++++|+.++  +++.-.|-.|++|.-..+.            .....|.+|..  ...|-.+-| -
T Consensus       326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN--~~TVKgVNFfG  403 (559)
T KOG1334|consen  326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN--SRTVKGVNFFG  403 (559)
T ss_pred             cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--ccccceeeecc
Confidence            3         3468999999777  8888889999999633221            11234778863  334777765 6


Q ss_pred             eCCCEEEEEcCCCeEEEEE
Q 041916          196 PYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       196 p~~~~l~~~~~dg~~~i~~  214 (359)
                      |...|+++|+.-|.+.||.
T Consensus       404 PrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  404 PRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             CccceEEecCccceEEEEe
Confidence            8889999999999777764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.27  E-value=9.8e-10  Score=106.70  Aligned_cols=171  Identities=15%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             CeEEEe-C--CCc-----EEEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC--e-----EEEEEecCC-CCe
Q 041916            1 YPYIYN-R--DGT-----ELHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG--E-----IVGNFRTGL-GRT   63 (359)
Q Consensus         1 ~v~iwd-~--~g~-----~~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~-----~~~~~~~~~-~~v   63 (359)
                      +|+||+ .  .|.     ...++. ..+.+.++...+.+..+|.++.||.|.+.++...  .     +......+. +.+
T Consensus      1072 tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV 1151 (1431)
T ss_pred             eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce
Confidence            589999 2  122     123333 2233488888899999999999999999999762  1     112222222 333


Q ss_pred             EEE-EEcC-CCC-EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916           64 DVM-RVNP-FNG-VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        64 ~~~-~~sp-~~~-~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                      ..| +|.. .+. .++.+...+.|..||+++...+..++  ...|.|++++.+|.++++++|+..|.+.+||+|-+.++.
T Consensus      1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence            333 3332 233 78888888999999998876555443  446889999999999999999999999999999988888


Q ss_pred             ecc----CCceeEEEcCC---c--eEEEE--cCCcEEEEcCCCC
Q 041916          139 TLP----GHAKTLDFSQK---G--LLAVG--TGSFVQILGDFSG  171 (359)
Q Consensus       139 ~~~----~~i~~~~~s~~---g--l~~~~--~d~~i~i~d~~~~  171 (359)
                      .+.    .++..+..+|-   .  .++++  ..+.|.+|++.++
T Consensus      1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            872    35666665552   2  44444  4578999998877

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.6e-08  Score=86.57  Aligned_cols=205  Identities=16%  Similarity=0.226  Sum_probs=136.2

Q ss_pred             eEEEe---CCCcE--EEEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCC--CeE--EEEEecCCCCeEEEEEc
Q 041916            2 PYIYN---RDGTE--LHCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTM--GEI--VGNFRTGLGRTDVMRVN   69 (359)
Q Consensus         2 v~iwd---~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s   69 (359)
                      |++|+   .+|+.  +..+..-..++-|+|+|+.++|+++..   +|.|.-|.++.  |..  +........+.+.++++
T Consensus        18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd   97 (346)
T COG2706          18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD   97 (346)
T ss_pred             eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC
Confidence            56666   33432  233334445689999999999988765   47777777764  542  22222333455889999


Q ss_pred             CCCCEEEEEe-CCCeEEEEeCCC-Ccc--eEEEeccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc
Q 041916           70 PFNGVVSLGH-SGGTVTMWKPTT-AAP--LIKMLCHQGP----------VSALAFHPNGHLMATSGK-ECKIKIWDLRKY  134 (359)
Q Consensus        70 p~~~~l~sg~-~dg~v~lwd~~~-~~~--~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~  134 (359)
                      ++|++++++. ..|.|.++-++. |.+  ...+..|.+.          +.+..+.|++++|+++.. -..|.+|++..+
T Consensus        98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg  177 (346)
T COG2706          98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG  177 (346)
T ss_pred             CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence            9999988876 457899998865 432  2223356555          889999999999988763 237999999977


Q ss_pred             eeeEec------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeeccc-----CCCCcceEEEEEeeCCCE
Q 041916          135 EVLQTL------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHS-----MVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       135 ~~~~~~------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~  200 (359)
                      .....-      ......|.|+|+|   ++++--+++|.+|........+..+..+.     ........+|..+|+|++
T Consensus       178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF  257 (346)
T COG2706         178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF  257 (346)
T ss_pred             ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence            643222      2357999999999   45555789999998655322222222211     111235778999999999


Q ss_pred             EEEEcC
Q 041916          201 LGIGHS  206 (359)
Q Consensus       201 l~~~~~  206 (359)
                      |.++..
T Consensus       258 LYasNR  263 (346)
T COG2706         258 LYASNR  263 (346)
T ss_pred             EEEecC
Confidence            877654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=2.6e-09  Score=96.41  Aligned_cols=168  Identities=17%  Similarity=0.166  Sum_probs=133.0

Q ss_pred             CeEEEe-CCCcEEEEeccC---CCe-EEEEEe------c--------------CCCEEEEEecCCeEEEEECCCCeEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEH---GAV-LKLQFL------R--------------NHFLLASINKFGQLRYQDVTMGEIVGN   55 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h---~~~-~~l~~s------~--------------~~~~l~s~~~dg~i~iwd~~~~~~~~~   55 (359)
                      +++||| ..++.-..|...   .+. ++..|.      |              +...++-|...|.|.+|++..|+....
T Consensus        16 ~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~   95 (541)
T KOG4547|consen   16 RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAK   95 (541)
T ss_pred             eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEE
Confidence            579999 666665555432   122 444442      2              234567778889999999999998887


Q ss_pred             Ee--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           56 FR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        56 ~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                      +.  .|.++|+++.++.+-..|.+++.|+.+..|++.....+..+.+.+..+.+++.+|||..+++++  ++|++||+.+
T Consensus        96 ~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~  173 (541)
T KOG4547|consen   96 LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET  173 (541)
T ss_pred             EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence            76  5889999999999989999999999999999999999999998889999999999999999987  6899999999


Q ss_pred             ceeeEeccC---CceeEEEcCC-----c--eEEE-EcCCcEEEEcCCC
Q 041916          134 YEVLQTLPG---HAKTLDFSQK-----G--LLAV-GTGSFVQILGDFS  170 (359)
Q Consensus       134 ~~~~~~~~~---~i~~~~~s~~-----g--l~~~-~~d~~i~i~d~~~  170 (359)
                      .+.+..|++   +|++++|.-+     |  ++++ ..+..+.+|-...
T Consensus       174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999954   6788888765     4  3332 3446777776443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.25  E-value=1.1e-08  Score=87.61  Aligned_cols=193  Identities=16%  Similarity=0.135  Sum_probs=136.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe---EEEEEecCCCEEEEEec-----CCeEEEEECC-CCeEEEEEecCCCCeEEEEEcC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV---LKLQFLRNHFLLASINK-----FGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~---~~l~~s~~~~~l~s~~~-----dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp   70 (359)
                      +..+|| .+|.....+....+-   -...|||||++|++.-+     .|.|-|||.. +-..+.++..|.-..+.+.+.|
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence            357899 889988888765553   35689999999998644     5899999998 6678889998887889999999


Q ss_pred             CCCEEEEEe------------------CCCeEEEEeCCCCcceEEEe----ccCCCeEEEEEcCCCCEEEEEeCCC----
Q 041916           71 FNGVVSLGH------------------SGGTVTMWKPTTAAPLIKML----CHQGPVSALAFHPNGHLMATSGKEC----  124 (359)
Q Consensus        71 ~~~~l~sg~------------------~dg~v~lwd~~~~~~~~~~~----~h~~~v~~i~~~~~~~~l~~~~~d~----  124 (359)
                      ||..|+++.                  .+.++.+.|..+|+.+....    -|.-.|+.++++++|..++..-..|    
T Consensus       109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~  188 (305)
T PF07433_consen  109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD  188 (305)
T ss_pred             CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence            997777753                  23456667778888776633    3777899999999998776655443    


Q ss_pred             ---eEEEEEcCCceeeE----------eccCCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCcc
Q 041916          125 ---KIKIWDLRKYEVLQ----------TLPGHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQ  188 (359)
Q Consensus       125 ---~i~iwd~~~~~~~~----------~~~~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  188 (359)
                         .|.+++...  .+.          .+.+.+-+|+++++| +++++  ..+.+.+||..++ ..+....-.      .
T Consensus       189 ~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg-~~~~~~~l~------D  259 (305)
T PF07433_consen  189 APPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG-RLLGSVPLP------D  259 (305)
T ss_pred             cCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC-CEeeccccC------c
Confidence               244444332  222          225678999999999 55444  5789999997776 333333222      4


Q ss_pred             eEEEEEeeCCCEEEE
Q 041916          189 IGKVSFRPYEDVLGI  203 (359)
Q Consensus       189 v~~~~~~p~~~~l~~  203 (359)
                      +..++-.+++ ++++
T Consensus       260 ~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  260 ACGVAPTDDG-FLVS  273 (305)
T ss_pred             eeeeeecCCc-eEEe
Confidence            6677766666 4443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=2.1e-11  Score=102.93  Aligned_cols=167  Identities=19%  Similarity=0.240  Sum_probs=124.3

Q ss_pred             EEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----cceEE
Q 041916           25 QFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-----APLIK   97 (359)
Q Consensus        25 ~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-----~~~~~   97 (359)
                      +|+-+  +.. ++.+.+-.|-+-|+.+|-. ..|. ..+.|.++.|...+++++.|+.+|.|..+|++.+     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            66543  344 5555677888999987743 3444 5577999999998999999999999999999865     23343


Q ss_pred             EeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee---eEeccCCceeEEEcCC------c-eEEEEcCCcEEEE
Q 041916           98 MLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV---LQTLPGHAKTLDFSQK------G-LLAVGTGSFVQIL  166 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~i~~~~~s~~------g-l~~~~~d~~i~i~  166 (359)
                      + -|.+.|+++..-. ++.+|++.+.+|+|++||+|.-++   +.++.++++..+..|-      | ++++|.|-..+||
T Consensus       295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            3 5889999988776 788999999999999999998777   8888999987776653      3 8888999999999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEee
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      .+..+ ..+..+..........+.+++|..
T Consensus       374 sl~~g-hLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  374 SLDSG-HLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             ecccC-ceeeccCCCCccccccccceehhc
Confidence            98766 444443322211222466666653

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=2.7e-08  Score=89.74  Aligned_cols=215  Identities=13%  Similarity=0.174  Sum_probs=133.9

Q ss_pred             CCCcE--EEEeccCCCeEEEEEecCCCEEEEEec----CCeEEEEECCCC--e--EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            7 RDGTE--LHCLKEHGAVLKLQFLRNHFLLASINK----FGQLRYQDVTMG--E--IVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         7 ~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      .+|+.  +..+.....+..++++|++.+|+++..    ++.|..|++...  .  .+............++++|++.+|+
T Consensus        23 ~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~  102 (345)
T PF10282_consen   23 ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLY  102 (345)
T ss_dssp             TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEE
T ss_pred             CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEE
Confidence            44443  334445556688999999999988876    579999998764  3  3444443445566799999999988


Q ss_pred             EEe-CCCeEEEEeCCC-CcceEE--Eecc-----------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCce--e--
Q 041916           77 LGH-SGGTVTMWKPTT-AAPLIK--MLCH-----------QGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYE--V--  136 (359)
Q Consensus        77 sg~-~dg~v~lwd~~~-~~~~~~--~~~h-----------~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~--  136 (359)
                      ++. .+|.|.++++.. +.....  ...|           .....++.|+|+|++++++.. ...|.+|++....  .  
T Consensus       103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred             EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence            887 589999999986 332221  1111           234689999999999887653 4589999997654  2  


Q ss_pred             eEec----cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecc--cCCCCcceEEEEEeeCCCEEEEE
Q 041916          137 LQTL----PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGH--SMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       137 ~~~~----~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      ...+    ......++|+|+|  ++++. .++.|.+|++.......   +.+...  ..........++++|+|++|.++
T Consensus       183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs  262 (345)
T PF10282_consen  183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS  262 (345)
T ss_dssp             EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred             eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence            1222    2357899999999  44444 56899999876221111   111111  11011257889999999987765


Q ss_pred             cC-CCeEEEEEcCCCCCc
Q 041916          205 HS-MGWSSILVPGSGEPN  221 (359)
Q Consensus       205 ~~-dg~~~i~~~~~~d~~  221 (359)
                      .. .+.+.+|.....++.
T Consensus       263 nr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             ECTTTEEEEEEECTTTTT
T ss_pred             eccCCEEEEEEEecCCCc
Confidence            54 344555544333333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.23  E-value=4.9e-10  Score=105.72  Aligned_cols=189  Identities=20%  Similarity=0.263  Sum_probs=144.7

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA  109 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~  109 (359)
                      +..++.|+....+..+|+.+++..+...-..+.|.-|+.  +++++.+|...|+|.+-|+++.+.+.++.+|.+.|.++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence            445666777778889999988877766655555777765  568999999999999999999999999999999997665


Q ss_pred             EcCCCCEEEEEeC---------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC-Cc
Q 041916          110 FHPNGHLMATSGK---------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS-HN  174 (359)
Q Consensus       110 ~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~-~~  174 (359)
                      .  .|+.|++||.         |..|++||+|+.+.+.-+  +....-+.|+|.-   +++++..|...+.|..+-. ..
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence            5  7899999984         567899999998766555  3334667788865   7788888999999954432 23


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccc
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSW  225 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~  225 (359)
                      ...+.-+.  .++.+.++.++++++.|+.|..+|.+.+|. ....+.+.-+
T Consensus       303 ~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~Fn~~  350 (1118)
T KOG1275|consen  303 AGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQFNEY  350 (1118)
T ss_pred             cceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec-CCCCCccCCC
Confidence            44444443  344599999999999999999999999998 4444444433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.23  E-value=2.4e-09  Score=88.86  Aligned_cols=188  Identities=12%  Similarity=0.087  Sum_probs=133.6

Q ss_pred             cCCCeEEEEEec---CCC-EEEEEecCCeEEEEECCCCeEEEEEecCC------CCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           17 EHGAVLKLQFLR---NHF-LLASINKFGQLRYQDVTMGEIVGNFRTGL------GRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        17 ~h~~~~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      .|.....|-|+.   +|. .|+-+..+|.|.++..........+++-.      ....++.|++.+..++++..+|.+.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            344457777764   344 56777788999999876554444443211      12457889999999999999999996


Q ss_pred             EeCCCCc--ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-ceeeEe----ccCCceeEEEcCCc---eE
Q 041916           87 WKPTTAA--PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-YEVLQT----LPGHAKTLDFSQKG---LL  155 (359)
Q Consensus        87 wd~~~~~--~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~----~~~~i~~~~~s~~g---l~  155 (359)
                      -+.....  .+++++.|.-.++...|+. +.+.+++||.|+.+..||+|. ++.+..    ....|.+|.-+|..   ++
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence            6655443  3447889999999999986 567899999999999999993 333322    24568888888764   88


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC--CEEEEEcCCCe
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE--DVLGIGHSMGW  209 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg~  209 (359)
                      +++.|..|++||.++..+++..-..     ++.|+.+.++|.-  .+|+++-.+|.
T Consensus       228 TGsYDe~i~~~DtRnm~kPl~~~~v-----~GGVWRi~~~p~~~~~lL~~CMh~G~  278 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRNMGKPLFKAKV-----GGGVWRIKHHPEIFHRLLAACMHNGA  278 (339)
T ss_pred             EeccccceeeeehhcccCccccCcc-----ccceEEEEecchhhhHHHHHHHhcCc
Confidence            8999999999998865555443322     2369999999964  34555555553

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=1.9e-08  Score=102.36  Aligned_cols=214  Identities=12%  Similarity=0.062  Sum_probs=140.0

Q ss_pred             eEEEeCCCcEEEEecc-C--------------CCeEEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecC------
Q 041916            2 PYIYNRDGTELHCLKE-H--------------GAVLKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTG------   59 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~-h--------------~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------   59 (359)
                      |++||.+|..+..+.. .              ..+..++++++++.|+++.. +..|+++|+.++. +.++.+.      
T Consensus       592 I~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~  670 (1057)
T PLN02919        592 IVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSD  670 (1057)
T ss_pred             EEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCC
Confidence            6678877776655543 1              12488999998887666544 5689999987765 3333210      


Q ss_pred             -----------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEEec---------c------CCCeEEEEEcC
Q 041916           60 -----------LGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---------H------QGPVSALAFHP  112 (359)
Q Consensus        60 -----------~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~---------h------~~~v~~i~~~~  112 (359)
                                 ......++|+| ++.++++.+.++.|.+||..++... .+.+         +      -...+.|+|+|
T Consensus       671 ~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp  749 (1057)
T PLN02919        671 YQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP  749 (1057)
T ss_pred             CCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC
Confidence                       12346899999 5566777778899999998766432 2211         0      12346799999


Q ss_pred             CCCEEE-EEeCCCeEEEEEcCCceeeE-------------ec-----------cCCceeEEEcCCc-e-EEEEcCCcEEE
Q 041916          113 NGHLMA-TSGKECKIKIWDLRKYEVLQ-------------TL-----------PGHAKTLDFSQKG-L-LAVGTGSFVQI  165 (359)
Q Consensus       113 ~~~~l~-~~~~d~~i~iwd~~~~~~~~-------------~~-----------~~~i~~~~~s~~g-l-~~~~~d~~i~i  165 (359)
                      +|.+|+ +-+.++.|++||+.++....             .+           -.....++++++| + ++-+.++.|++
T Consensus       750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv  829 (1057)
T PLN02919        750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK  829 (1057)
T ss_pred             CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence            998655 44567899999998754211             01           0134689999999 4 44456789999


Q ss_pred             EcCCCCCCccceeecccC----------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          166 LGDFSGSHNYSRYMGHSM----------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       166 ~d~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      ||..++  .+..+.+...          ........++++++|+++++.+.++.+++|......
T Consensus       830 iD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        830 LDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            997554  2222222110          011246789999999988888888888888865544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=1.7e-09  Score=91.61  Aligned_cols=192  Identities=12%  Similarity=0.125  Sum_probs=124.8

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCC-e----EEEEEecCC------------CCeEEEEEcCCC--CEEEEEeCCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMG-E----IVGNFRTGL------------GRTDVMRVNPFN--GVVSLGHSGG   82 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~----~~~~~~~~~------------~~v~~~~~sp~~--~~l~sg~~dg   82 (359)
                      .++.|..+|.+||||..+|.|.++.-... +    ....++.|.            ..|+.+.|.+++  ..++....|.
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk  108 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK  108 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence            89999999999999999999999875432 1    334455553            357889998876  4577778999


Q ss_pred             eEEEEeCCCCc--c---------------------------------eEEE-eccCCCeEEEEEcCCCCEEEEE------
Q 041916           83 TVTMWKPTTAA--P---------------------------------LIKM-LCHQGPVSALAFHPNGHLMATS------  120 (359)
Q Consensus        83 ~v~lwd~~~~~--~---------------------------------~~~~-~~h~~~v~~i~~~~~~~~l~~~------  120 (359)
                      +|++|-+....  .                                 ...+ .+|.--|++|+++.|+..++++      
T Consensus       109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN  188 (433)
T KOG1354|consen  109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN  188 (433)
T ss_pred             ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence            99999764211  0                                 0001 1355556666666666555554      


Q ss_pred             --------------------------------------------eCCCeEEEEEcCCceeeE----ec------------
Q 041916          121 --------------------------------------------GKECKIKIWDLRKYEVLQ----TL------------  140 (359)
Q Consensus       121 --------------------------------------------~~d~~i~iwd~~~~~~~~----~~------------  140 (359)
                                                                  +..|+|++.|+|.....-    .+            
T Consensus       189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsff  268 (433)
T KOG1354|consen  189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFF  268 (433)
T ss_pred             eccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhH
Confidence                                                        556777777777432111    01            


Q ss_pred             ---cCCceeEEEcCCceEEEEcC-CcEEEEcCCCCCCccceeecccCCCC------------cceEEEEEeeCCCEEEEE
Q 041916          141 ---PGHAKTLDFSQKGLLAVGTG-SFVQILGDFSGSHNYSRYMGHSMVKG------------YQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       141 ---~~~i~~~~~s~~gl~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~p~~~~l~~~  204 (359)
                         -..|..+.|+++|-+..+.| -+|++||+.....++..+..|.. -.            ..-..++|+.++.++++|
T Consensus       269 seiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~-lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG  347 (433)
T KOG1354|consen  269 SEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEY-LRSKLCSLYENDAIFDKFECSWSGNDSYVMTG  347 (433)
T ss_pred             HHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHh-HHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence               13578899999993334444 79999998776677777776642 10            012346777777777777


Q ss_pred             cCCCeEEEEE
Q 041916          205 HSMGWSSILV  214 (359)
Q Consensus       205 ~~dg~~~i~~  214 (359)
                      +.....+++.
T Consensus       348 sy~n~frvf~  357 (433)
T KOG1354|consen  348 SYNNVFRVFN  357 (433)
T ss_pred             cccceEEEec
Confidence            7776655554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=4.3e-08  Score=84.01  Aligned_cols=184  Identities=11%  Similarity=0.118  Sum_probs=128.8

Q ss_pred             EEEEEecCCCEEEEEec-CCeEEEEECCC-CeEEE--EEecCCCC----------eEEEEEcCCCCEEEEEe--CCCeEE
Q 041916           22 LKLQFLRNHFLLASINK-FGQLRYQDVTM-GEIVG--NFRTGLGR----------TDVMRVNPFNGVVSLGH--SGGTVT   85 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~sp~~~~l~sg~--~dg~v~   85 (359)
                      +-+++++++++|++++. .|.|.++-+.. |.+..  ....|.++          +++..+.|++++|++.+  .| .|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEE
Confidence            88999999999988865 68999999965 43221  22235554          89999999999988765  34 589


Q ss_pred             EEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCc----eeeEec---------cCCceeE
Q 041916           86 MWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKY----EVLQTL---------PGHAKTL  147 (359)
Q Consensus        86 lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~---------~~~i~~~  147 (359)
                      +|++..+....    .+... ..-+.|+|+|++++.++.+ .+++|-+|.....    +.++.+         ......|
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            99998775322    22222 3357899999999987766 4899999998763    223332         1246889


Q ss_pred             EEcCCc-eEEEEc--CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          148 DFSQKG-LLAVGT--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       148 ~~s~~g-l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      .++|+| ++-++.  ...|.+|.+......+........ .+.....+.|+|.+++|++++.++
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCC
Confidence            999999 555553  257888876554334443333322 344578999999999999988875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=1.6e-10  Score=115.62  Aligned_cols=160  Identities=14%  Similarity=0.312  Sum_probs=128.3

Q ss_pred             eEEEe-CCCcEEEEeccC--CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEH--GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h--~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |++|. ..+..+.+++.-  ..++.+.|+.+|+.+..+..||.|.+|.+. .++....+.|....+.+.|-.  ..++++
T Consensus      2232 v~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~ta 2308 (2439)
T KOG1064|consen 2232 VRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATA 2308 (2439)
T ss_pred             EEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhcc
Confidence            56777 667777766643  334899999999999999999999999987 677888889999999998865  556665


Q ss_pred             e---CCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc
Q 041916           79 H---SGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG  153 (359)
Q Consensus        79 ~---~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g  153 (359)
                      +   .++.+.+||..-.  ..+.. .+|.+.++++++-|....|++||.+|.|++||++..+.++.++.      +....
T Consensus      2309 g~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------~~~~~ 2381 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LDTRE 2381 (2439)
T ss_pred             ccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------hhhhh
Confidence            3   6789999995432  22222 68999999999999999999999999999999999888888865      44333


Q ss_pred             -eEEEEcCCcEEEEcCCCC
Q 041916          154 -LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~  171 (359)
                       +++++..|.++||++..-
T Consensus      2382 ~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2382 YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             eeeccCcccceEEEEcccc
Confidence             778888999999996543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.13  E-value=4.9e-10  Score=112.31  Aligned_cols=150  Identities=22%  Similarity=0.339  Sum_probs=124.9

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      ..+.++.-+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+..|+.+..+..||.+.+|.+. .++...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence            3458888888888999999999999999999988877763 34789999999999999999999999999987 778888


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC---ceeeEec-cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK---YEVLQTL-PGHAKTLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~---~~~~~~~-~~~i~~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      .++|....+++.|-.  ..+++++   .++.+.+||..-   ..++++. .+.++++++.|..  +++||.+|.|++||+
T Consensus      2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred             cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence            899999888888865  5677765   468999999753   2345544 6789999999998  889999999999996


Q ss_pred             CCC
Q 041916          169 FSG  171 (359)
Q Consensus       169 ~~~  171 (359)
                      +..
T Consensus      2366 rqr 2368 (2439)
T KOG1064|consen 2366 RQR 2368 (2439)
T ss_pred             HHH
Confidence            543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=2.9e-08  Score=91.39  Aligned_cols=162  Identities=12%  Similarity=0.092  Sum_probs=101.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEE-ec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASI-NK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      |+++| .+|+... +....+. ....|+|||..|+.. +.  +..|.++|+.++.. ..+..+.+......|+|||+.|+
T Consensus       215 Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        215 LYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             EEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence            67888 5555433 3334444 678899999766543 32  45788889887764 44544444345668999998777


Q ss_pred             EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceeeEec-cCC
Q 041916           77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---------CKIKIWDLRKYEVLQTL-PGH  143 (359)
Q Consensus        77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~-~~~  143 (359)
                      ..+. .|  .|.++|+.+++.......  +. ....|+|||++|+..+..         ..|.+.|+.++....-. .+.
T Consensus       293 F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~  369 (419)
T PRK04043        293 FVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV  369 (419)
T ss_pred             EEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC
Confidence            6653 33  588888887765332221  11 124899999998777643         36888898877643222 223


Q ss_pred             ceeEEEcCCc--eEEEE-cCC--cEEEEcC
Q 041916          144 AKTLDFSQKG--LLAVG-TGS--FVQILGD  168 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~-~d~--~i~i~d~  168 (359)
                      .....|+|||  ++..+ ..+  .|.++++
T Consensus       370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             cCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            4568999999  33333 223  4566664

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.1e-08  Score=92.01  Aligned_cols=167  Identities=16%  Similarity=0.334  Sum_probs=117.2

Q ss_pred             EEEEEecCCC-EEEEEec--C---------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE--EeCCCeEEEE
Q 041916           22 LKLQFLRNHF-LLASINK--F---------GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL--GHSGGTVTMW   87 (359)
Q Consensus        22 ~~l~~s~~~~-~l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--g~~dg~v~lw   87 (359)
                      ..+.|++-|. +|+.++.  |         .++++.++....+...+. ..++|+++.|+|+++-+++  |-.=-.+.+|
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif  299 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF  299 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence            5677877653 3333332  2         478888887434443343 4689999999999976554  4455679999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEeccC-CceeEEEcCCc--eEEEE---
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKG--LLAVG---  158 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~-~i~~~~~s~~g--l~~~~---  158 (359)
                      |++ +.++..+  ..++-+++-|+|.|++|+.+|-   -|.|-+||+.+.+++..+.. ..+-+.|+|||  +++++   
T Consensus       300 nlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  300 NLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             cCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence            987 4455444  5677889999999999998875   47899999999888888843 46778999999  66655   


Q ss_pred             ---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          159 ---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       159 ---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                         .|+.++||+. +|..........      .+..+.|-|...
T Consensus       377 RlrvdNg~Kiwhy-tG~~l~~~~f~s------EL~qv~W~P~~~  413 (566)
T KOG2315|consen  377 RLRVDNGIKIWHY-TGSLLHEKMFKS------ELLQVEWRPFND  413 (566)
T ss_pred             cEEecCCeEEEEe-cCceeehhhhhH------hHhheeeeecCC
Confidence               3688999994 552222211111      377888988653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=2.2e-08  Score=90.03  Aligned_cols=185  Identities=13%  Similarity=0.145  Sum_probs=115.4

Q ss_pred             CCCeEEEEEecCCCEEEEEec-----------CCeEEEEECCCCeEEEEEecCC--CCe-EEEEEcCCCCEEEEEeCCCe
Q 041916           18 HGAVLKLQFLRNHFLLASINK-----------FGQLRYQDVTMGEIVGNFRTGL--GRT-DVMRVNPFNGVVSLGHSGGT   83 (359)
Q Consensus        18 h~~~~~l~~s~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~--~~v-~~~~~sp~~~~l~sg~~dg~   83 (359)
                      |.++.-+.|||+.+||+|-+.           ...|+|||+.+|...+.|....  ..+ .-+.||.|+.++|.-..| +
T Consensus       249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s  327 (698)
T KOG2314|consen  249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S  327 (698)
T ss_pred             CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence            788888999999999999653           2579999999999888887632  222 346899999999987765 5


Q ss_pred             EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEE--------------EEEc-------------
Q 041916           84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIK--------------IWDL-------------  131 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~--------------iwd~-------------  131 (359)
                      |.||+..+..++..-.-..+.|....|+|.++.||.=+..     ..+.              ++++             
T Consensus       328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            8898866533322211233456677777776666543211     0111              1111             


Q ss_pred             -------------------------CCce-eeE--eccCCceeEEEcCCc--eEEEEc---CCcEEEEcCCCCCCcccee
Q 041916          132 -------------------------RKYE-VLQ--TLPGHAKTLDFSQKG--LLAVGT---GSFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       132 -------------------------~~~~-~~~--~~~~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~  178 (359)
                                               +... ++.  .+...|...+|-|.|  +++.+.   ..++.+|...+.......+
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence                                     1100 000  113456788999999  443332   3689999876432222222


Q ss_pred             ecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          179 MGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ...   .....+.+.|+|.|++++++..
T Consensus       488 k~~---dk~~~N~vfwsPkG~fvvva~l  512 (698)
T KOG2314|consen  488 KEL---DKKFANTVFWSPKGRFVVVAAL  512 (698)
T ss_pred             hhh---cccccceEEEcCCCcEEEEEEe
Confidence            211   1126889999999999987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.05  E-value=6.5e-07  Score=76.82  Aligned_cols=191  Identities=18%  Similarity=0.206  Sum_probs=119.6

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEe-cCCCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFL-RNHFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l   75 (359)
                      |+.|+..+.....+.... +.++++. +++.+++ +... .+.++|+.+++....+..     ....++.+++.|+|++.
T Consensus        24 i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly  100 (246)
T PF08450_consen   24 IYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLY  100 (246)
T ss_dssp             EEEEETTTTEEEEEESSS-EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EE
T ss_pred             EEEEECCCCeEEEEecCC-CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEE
Confidence            445553333333333333 6788888 6655544 4444 566669998865443332     34568899999999987


Q ss_pred             EEEeCC--------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCC--c-----eeeEe
Q 041916           76 SLGHSG--------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKECKIKIWDLRK--Y-----EVLQT  139 (359)
Q Consensus        76 ~sg~~d--------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~~i~iwd~~~--~-----~~~~~  139 (359)
                      ++....        |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..+.|..||+..  .     +.+..
T Consensus       101 ~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~  178 (246)
T PF08450_consen  101 VTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID  178 (246)
T ss_dssp             EEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred             EEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE
Confidence            776543        668888877 5433333 3345568999999999876 556778899999863  2     12223


Q ss_pred             ccC---CceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEE
Q 041916          140 LPG---HAKTLDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGI  203 (359)
Q Consensus       140 ~~~---~i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~  203 (359)
                      +..   .+..+++..+| ++++ ...+.|.++|.. + ..+..+....    ..+++++|. |+.+.|.+
T Consensus       179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~----~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPV----PRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SS----SSEEEEEEESTTSSEEEE
T ss_pred             cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCC----CCEEEEEEECCCCCEEEE
Confidence            322   36889999999 5444 467899999954 4 4554444332    278999994 56565544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=6.6e-08  Score=98.50  Aligned_cols=150  Identities=13%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             eEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecC---------------CCCeEEEEEcCCCC-EEEEEeCCCe
Q 041916           21 VLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTG---------------LGRTDVMRVNPFNG-VVSLGHSGGT   83 (359)
Q Consensus        21 ~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~-~l~sg~~dg~   83 (359)
                      +..++|+| ++.++++.+.++.|++||..++... .+.+.               ....+.|+++|++. ++++.+.++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            47899999 5666677777899999999877542 22111               12456799999987 5556667799


Q ss_pred             EEEEeCCCCcceEEEe-------------cc--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c
Q 041916           84 VTMWKPTTAAPLIKML-------------CH--------QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P  141 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~-------------~h--------~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~  141 (359)
                      |++||+.++.......             .+        -....+++|+++|.++++-+.++.|++||..++...... .
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            9999998764221110             00        012358999999998888889999999999887654322 1


Q ss_pred             ---------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          142 ---------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       142 ---------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                                     ..+..++++++|  +++-+.++.|++||+.++
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence                           146789999999  444456789999998765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.05  E-value=5.7e-08  Score=86.56  Aligned_cols=194  Identities=12%  Similarity=0.129  Sum_probs=133.1

Q ss_pred             CeEEEEEecC--CCEEEE-----EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-----------CC
Q 041916           20 AVLKLQFLRN--HFLLAS-----INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-----------SG   81 (359)
Q Consensus        20 ~~~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-----------~d   81 (359)
                      ++...+|+|-  +.-||.     .+..+++++|.+..+..+.+..-....-..+.|++.|.+|++--           ..
T Consensus       175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge  254 (561)
T COG5354         175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE  254 (561)
T ss_pred             ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence            3477888885  344554     45688999999987776655443333345688999998765421           12


Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEec-cCCceeEEEcCCc--eEE
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG--LLA  156 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g--l~~  156 (359)
                      .+++|+++......... .-.++|...+|.|.++.+++++  .+..+.++|++.. ....+ +..-..+.|||.+  ++.
T Consensus       255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~  332 (561)
T COG5354         255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILF  332 (561)
T ss_pred             ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEE
Confidence            46888888754433333 5688999999999988877665  6789999999976 55555 5566889999999  666


Q ss_pred             EEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          157 VGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       157 ~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      +|.|   |.+.+||..........+.+.      ...-+.|+|++.++.+....-.      -..|..+++|++
T Consensus       333 agF~nl~gni~i~~~~~rf~~~~~~~~~------n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v  394 (561)
T COG5354         333 AGFDNLQGNIEIFDPAGRFKVAGAFNGL------NTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDV  394 (561)
T ss_pred             ecCCccccceEEeccCCceEEEEEeecC------CceEeeccCCceEEEecCCCcc------cccCcceEEEEe
Confidence            6655   799999966554444344444      4566789999999877654431      123555555554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=8.3e-08  Score=78.94  Aligned_cols=176  Identities=9%  Similarity=0.023  Sum_probs=116.5

Q ss_pred             EEEEEec-----CCCEEEEEecCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcc
Q 041916           22 LKLQFLR-----NHFLLASINKFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        22 ~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      ..|.|-|     ..-+||.||..|...+|.+.+.+. +.....|...|+-+.=.-+ ..-+..++.|.++++.++.-+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            5666766     346899999999999999986553 3333334433322211111 12355577888888887764432


Q ss_pred             eEEEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec----cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916           95 LIKMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL----PGHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        95 ~~~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                      -..  .|..  .+.++++++|++++++.+....|..|.+...  ..+...    ..+-.+.+|+...  ++++..||++.
T Consensus       151 ~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~  228 (344)
T KOG4532|consen  151 KFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA  228 (344)
T ss_pred             cce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence            222  2332  3789999999999999999999999988753  223322    3456788898877  77788999999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      |||++....+........-.+.+.+..+.|+|.|.
T Consensus       229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             EEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            99988765544433222112556899999998664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=5e-08  Score=91.45  Aligned_cols=135  Identities=16%  Similarity=0.273  Sum_probs=107.8

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEeCC---CCcceEEEec
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-----NGVVSLGHSGGTVTMWKPT---TAAPLIKMLC  100 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~sg~~dg~v~lwd~~---~~~~~~~~~~  100 (359)
                      +|.+++||+.||.|.|..+.+++...++.-+ .++.+++++|+     .+.+++|+.-| +.++.-+   ....+ .+..
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~  158 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE  158 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence            5899999999999999999998877776644 68999999998     36799999988 7777522   11222 4556


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---------CceeEEEcCCceEEEEcCCcEEEEcCC
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---------HAKTLDFSQKGLLAVGTGSFVQILGDF  169 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~i~~~~~s~~gl~~~~~d~~i~i~d~~  169 (359)
                      ..|+|.++.|  .|+++|-++.+| |++||+.+.+.+..++-         ....+.|.++..++.|...+|.|..+.
T Consensus       159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK  233 (846)
T ss_pred             CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence            6889999999  478999998877 99999999887776621         236788999988888888899998866

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.01  E-value=5e-09  Score=90.55  Aligned_cols=149  Identities=13%  Similarity=0.076  Sum_probs=106.1

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeE----EEEEecCCCCeEEEEEcCCCCEEEE---EeCCCeEEEEeCCCCcc
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEI----VGNFRTGLGRTDVMRVNPFNGVVSL---GHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s---g~~dg~v~lwd~~~~~~   94 (359)
                      ..+.++|.+++||++..+....++++.....    +.... -....+.+.|-.+......   ++....+.+|....+. 
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence            4556678899999998888877887764332    22222 1222344444444433333   4455566666665543 


Q ss_pred             eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916           95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~  169 (359)
                      ...+.+|-+.+++|+|+||+.+|+++..|..|++-....-..+..|    ..-|..++.-++. ++++|.|++|++||+.
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence            3445699999999999999999999999999999877665555555    3458999999988 8999999999999988


Q ss_pred             CCC
Q 041916          170 SGS  172 (359)
Q Consensus       170 ~~~  172 (359)
                      ++.
T Consensus       224 sgk  226 (390)
T KOG3914|consen  224 SGK  226 (390)
T ss_pred             cCC
Confidence            874

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.3e-09  Score=96.16  Aligned_cols=159  Identities=17%  Similarity=0.238  Sum_probs=118.6

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG   82 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg   82 (359)
                      .+..+.+|... ..++-..+.+-+++++.|.+|++|.+..       ..+..++..|..+|+++.|-.+.++++  +.||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence            35667788876 7777666778899999999999999864       237778889999999999999888776  4588


Q ss_pred             eEEEEeCCCCcceEEEe--ccCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEEcCCceeeEec-----c---CCceeEEE
Q 041916           83 TVTMWKPTTAAPLIKML--CHQGPVSALAFHP--NGHLM-ATSGKECKIKIWDLRKYEVLQTL-----P---GHAKTLDF  149 (359)
Q Consensus        83 ~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~--~~~~l-~~~~~d~~i~iwd~~~~~~~~~~-----~---~~i~~~~~  149 (359)
                      .|.+||+--+.++..+.  ...+.+..+..-|  +...+ +.|+...+|+++|.|....+..+     +   +-+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            89999987777765443  2223333343334  34444 44478899999999987655444     2   34689999


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCC
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      .|.|  +.++-+.|.|.+.|.+++
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNG  908 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCC
Confidence            9999  556667899999998777

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.3e-08  Score=94.03  Aligned_cols=196  Identities=11%  Similarity=0.099  Sum_probs=139.3

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 041916           17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE---------------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus        17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d   81 (359)
                      .|....|++|+....++|.||.||.+++..+.+..               .-.++.+|.+.|..+.|+.+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34444999999999999999999999999886521               123567999999999999999999999999


Q ss_pred             CeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-EeccC-CceeEEEcCCc--eE
Q 041916           82 GTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QTLPG-HAKTLDFSQKG--LL  155 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~-~i~~~~~s~~g--l~  155 (359)
                      |.|.+|-+-.+.-...+.  ...+.|.+++|+.||..++..-.||.|.+=.+...+.- ..+.+ ....+.||+|.  ++
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            999999887665333222  34667899999999999999999999988776653321 12233 45788999998  55


Q ss_pred             EEEcCCcEEEEcCCCCCCc-------cceeecccCCCCcceEEEEEe--------eCCCEEEEEcCCCeEEEE
Q 041916          156 AVGTGSFVQILGDFSGSHN-------YSRYMGHSMVKGYQIGKVSFR--------PYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~--------p~~~~l~~~~~dg~~~i~  213 (359)
                      .+-..|.+.+||...+...       +......+. .+..|..+.|.        |+-..|+++-.+|.+.+.
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~-~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM  244 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN-FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM  244 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecC-CCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence            5666799999995432110       000000100 11235556654        467788888888866553

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.96  E-value=8.5e-09  Score=89.13  Aligned_cols=124  Identities=13%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             eccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916           15 LKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT   91 (359)
Q Consensus        15 l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~   91 (359)
                      ......++++.|..+......+..   ...+.+|....+. ...+-+|.+.+..++|+||++.|+++..|..|++-....
T Consensus       104 ~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa  182 (390)
T KOG3914|consen  104 SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA  182 (390)
T ss_pred             eecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence            333344466666666554444433   4445555555433 344558999999999999999999999999999987665


Q ss_pred             CcceEEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           92 AAPLIKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        92 ~~~~~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      ...+..| .+|..-|..++.-++ ..|+++|.|++|++||+++|+++.++
T Consensus       183 ~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  183 TFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            5555554 389999999998765 45899999999999999999998877

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=4.6e-09  Score=97.20  Aligned_cols=195  Identities=15%  Similarity=0.212  Sum_probs=137.0

Q ss_pred             EEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCCC--CeEEEEEcCCC--CEEEEEeCCCeEEEE
Q 041916           13 HCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLG--RTDVMRVNPFN--GVVSLGHSGGTVTMW   87 (359)
Q Consensus        13 ~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~--~v~~~~~sp~~--~~l~sg~~dg~v~lw   87 (359)
                      ..+........+..+|.|.-+|.++.-| +.+.|+.. +.+..-+. |..  .|-.+.|+|..  .+.++......-.+|
T Consensus        19 lsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   19 LSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             eEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence            3455555668889999999888888776 55667654 33333333 322  46678888864  344444444556689


Q ss_pred             eCCCC---cceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc--eEEE
Q 041916           88 KPTTA---APLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG--LLAV  157 (359)
Q Consensus        88 d~~~~---~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g--l~~~  157 (359)
                      ++...   .....+.+|...|+.+.|+|. ...+++++.|..+..||+++. .++..+   ....+.+.|+-..  +++.
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            87533   223345589999999999995 456899999999999999985 456655   4567889998755  8888


Q ss_pred             EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEE
Q 041916          158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSIL  213 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~  213 (359)
                      +.++.|.+||++.+..++..+.+|..    .|+++.|.... ..+.+.+.||++.+|
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs----~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVS----SVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccce----eeehHHHhhhhhhhhcccCCCCceeee
Confidence            88899999999999888888888765    78888887543 234444444444444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.93  E-value=3.5e-07  Score=81.04  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=110.6

Q ss_pred             eccCCCeEEEEEecCCCEEEEEecCC-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916           15 LKEHGAVLKLQFLRNHFLLASINKFG-QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        15 l~~h~~~~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~   93 (359)
                      +....++.-..+..++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..+|+|..++++.....+.+.|+.++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            33334455555666667788899998 99999998776 45667778899999999999999999999999999999998


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceeeEec--cCCceeEEEcCCc
Q 041916           94 PLIKMLCHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG  153 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g  153 (359)
                      ....-+...+-|+.++|||+++++|-+--+|    .|++||+.+++.....  .+.-.+.+|.|+|
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~  500 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG  500 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence            6555456678899999999999999876554    6999999998875544  4455778899998

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.93  E-value=6.4e-07  Score=76.37  Aligned_cols=208  Identities=16%  Similarity=0.070  Sum_probs=128.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEE-EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKL-QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +|..|| .+|+++....--... ..+ ...+++..+++++.++.|..||..+|+.+..+... +++.... ...+..+++
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v   81 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYV   81 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eeccccccc
Confidence            378899 799998887642222 222 13335666777789999999999999999888763 2222211 223456677


Q ss_pred             EeCCCeEEEEeCCCCcceEEE-eccC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCc---------
Q 041916           78 GHSGGTVTMWKPTTAAPLIKM-LCHQ---GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA---------  144 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~-~~h~---~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i---------  144 (359)
                      ++.++.|..+|+.+|+.+... ....   ..........++..++++..++.|..+|+.+|+.+.......         
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence            778889999999999988874 3221   111222333347888888889999999999999877662111         


Q ss_pred             ----eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          145 ----KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       145 ----~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                          ..-....++ +++++.++.+..+|+.++... .....+      .+.. ...+.+..|++++.++.+..+...++
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~-w~~~~~------~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL-WSKPIS------GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE-EEECSS-------ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ecccccceEEECCEEEEEcCCCeEEEEECCCCCEE-EEecCC------CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence                122222344 666666775444487777422 111111      2222 14566777777777776666665443

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.92  E-value=3.9e-07  Score=91.38  Aligned_cols=187  Identities=14%  Similarity=0.176  Sum_probs=126.0

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEE----ECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQ----DVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iw----d~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      +.++.|.++...|+.+..+|.|.+.    |..+.  +.+..+   ...|.+++||||+.+|+....+|+|.+.+- +..+
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~  153 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP  153 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence            4888899998888888899999999    55443  234444   367999999999999999999998887641 1100


Q ss_pred             ----------------e--------EEEec------------------------cCCCeEEEEEcCCCCEEEEEeC---C
Q 041916           95 ----------------L--------IKMLC------------------------HQGPVSALAFHPNGHLMATSGK---E  123 (359)
Q Consensus        95 ----------------~--------~~~~~------------------------h~~~v~~i~~~~~~~~l~~~~~---d  123 (359)
                                      +        ..|.|                        +.+.-..|+|-.||.++|+.+.   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                            0        01110                        2223457999999999998874   2


Q ss_pred             ---CeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEc----CCcEEEEcCCCCCCccceeecccCCCCcceEEE
Q 041916          124 ---CKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGT----GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKV  192 (359)
Q Consensus       124 ---~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  192 (359)
                         ..|++|+-. |....+-   .+--.+++|-|.| ++++..    ...|.+|. ++| .....+.-........|..+
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNG-LrhgeF~l~~~~~~~~v~~l  310 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNG-LRHGEFTLRFDPEEEKVIEL  310 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCC-cEeeeEecCCCCCCceeeEE
Confidence               579999865 5543333   2334789999999 666653    25788887 444 22222221111134479999


Q ss_pred             EEeeCCCEEEEEcCCCeEEEEEc
Q 041916          193 SFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       193 ~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      .|++++.+|++...+. +.+|..
T Consensus       311 ~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  311 AWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             EECCCCCEEEEEecCC-ceEEEe
Confidence            9999999999977665 555543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=3.7e-09  Score=94.86  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=125.1

Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 041916           53 VGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK  125 (359)
Q Consensus        53 ~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~  125 (359)
                      +..+.+|...|..++--.+.+-+++++.|.+|++|.++.       ..+..+++.|..+|.++.|-.+-++++++  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456778988888888777778899999999999999763       23667788999999999999988888765  788


Q ss_pred             EEEEEcCCceeeEec-----cCCceeEEEcCC--c--eEEE-EcCCcEEEEcCCCCCCccceeec--ccCCCCcceEEEE
Q 041916          126 IKIWDLRKYEVLQTL-----PGHAKTLDFSQK--G--LLAV-GTGSFVQILGDFSGSHNYSRYMG--HSMVKGYQIGKVS  193 (359)
Q Consensus       126 i~iwd~~~~~~~~~~-----~~~i~~~~~s~~--g--l~~~-~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~  193 (359)
                      |.+||.--++++..+     .+.+..+..-|+  .  ++++ +...+|+++|.+..+ -...+..  -.+ +...+.+++
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~-Pna~~R~ia  883 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPG-PNALTRAIA  883 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCC-CchheeEEE
Confidence            999999888877655     233444444443  2  4444 467899999976652 2222211  122 445789999


Q ss_pred             EeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          194 FRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       194 ~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      ..|.|+.|++|-++|.+-++.+-. ...+..|..
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~-G~vINswrp  916 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARN-GKVINSWRP  916 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCC-CceeccCCc
Confidence            999999999999999888877543 344666753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.92  E-value=3.2e-07  Score=81.27  Aligned_cols=170  Identities=14%  Similarity=0.123  Sum_probs=126.2

Q ss_pred             Eec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcceEEEeccCC
Q 041916           26 FLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG-TVTMWKPTTAAPLIKMLCHQG  103 (359)
Q Consensus        26 ~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-~v~lwd~~~~~~~~~~~~h~~  103 (359)
                      |++ +|.+++..| -|...|.+...+-.+. + +|.+.|.-..+..++.-++.|..|| .+-++|..+++ +..+...-+
T Consensus       327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg  402 (668)
T COG4946         327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG  402 (668)
T ss_pred             hccCCCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence            444 578888877 4578888876554332 2 4667788888888888899999999 89999998775 344556778


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEc-----CCcEEEEcCCCCCCc
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGT-----GSFVQILGDFSGSHN  174 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~-----d~~i~i~d~~~~~~~  174 (359)
                      .|.++..+|+|++++++.....|.++|+.++.+...-   .+-|+.++|||++ +++-+.     ...|++||+..+ +.
T Consensus       403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Ki  481 (668)
T COG4946         403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KI  481 (668)
T ss_pred             ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eE
Confidence            8999999999999999999999999999998764332   4678999999999 666542     357999997665 32


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      .. .....    +.=.+-+|.|++++|..-+
T Consensus       482 y~-vTT~t----a~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         482 YD-VTTPT----AYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EE-ecCCc----ccccCcccCCCCcEEEEEe
Confidence            22 22221    1345678999999886543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.3e-07  Score=88.44  Aligned_cols=218  Identities=15%  Similarity=0.149  Sum_probs=155.9

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecC------------CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN------------HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR   67 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~   67 (359)
                      |.+.| .+-+.+..+..|... +.+.|.|-            .-+||++.-.|.|.+||...+..+..+..|..++..++
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC  116 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence            45666 666778888888876 99999872            12577888899999999999988889999999999999


Q ss_pred             EcCC---C-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-------ce
Q 041916           68 VNPF---N-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-------YE  135 (359)
Q Consensus        68 ~sp~---~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-------~~  135 (359)
                      |-|.   . ..|++-+...+|.+|+..+|+.+...........|+.++| |.+.+..-+..|.+.+.+.-.       ++
T Consensus       117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk  196 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK  196 (1062)
T ss_pred             eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence            9763   3 4677777788999999999999988876667778899999 677777666677777766532       12


Q ss_pred             eeEec----------------------cCC------ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916          136 VLQTL----------------------PGH------AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK  185 (359)
Q Consensus       136 ~~~~~----------------------~~~------i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  185 (359)
                      .++.-                      +..      ...++|+|.-  ++.......+.++|+.-. .++....-..  .
T Consensus       197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~-~~l~vvpier--~  273 (1062)
T KOG1912|consen  197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE-CCLAVVPIER--G  273 (1062)
T ss_pred             eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh-ceeEEEEecc--C
Confidence            11111                      000      1345678865  667777889999997654 4444443332  2


Q ss_pred             CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916          186 GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF  222 (359)
Q Consensus       186 ~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~  222 (359)
                      +.++.++--+|.-+.|.+.+.+|...+++.-.....+
T Consensus       274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f  310 (1062)
T KOG1912|consen  274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF  310 (1062)
T ss_pred             CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence            2345444445555789999999999998876544433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=5.3e-09  Score=96.82  Aligned_cols=213  Identities=15%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           10 TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      ..-..+.+|... +.+.|+|.. ..|++++.|..+..||+++.. ++..+..-......++|+-....+.+.+....|.+
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v  184 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV  184 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence            344567788887 999999975 678999999999999998754 55555555556778999875555555566678999


Q ss_pred             EeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce--eeEec--cCCceeEEEcCCc---eEEE
Q 041916           87 WKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE--VLQTL--PGHAKTLDFSQKG---LLAV  157 (359)
Q Consensus        87 wd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~s~~g---l~~~  157 (359)
                      ||++.+ .++..+.+|...|+.+.|+. --..+.+++.|++|+.||.....  .-+..  ..++..-.+.|-|   ++.-
T Consensus       185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp  264 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP  264 (1081)
T ss_pred             EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence            999876 57888889999999999986 33458889999999999987542  22222  3455555566644   1111


Q ss_pred             E----------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          158 G----------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       158 ~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      .          .++....|+..+...++..+.+|..    .|..+.|-..+..  .|..|..-.-+++-+.|..+++|-+
T Consensus       265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D----~V~eFlWR~r~e~--~~d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD----VVLEFLWRKRKEC--DGDYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             ccCCeeeeeccccchhhhhccccCCcceeeecCcch----HHHHHhhhhcccc--cCCCCccceeEEEeecCCceEeeec
Confidence            1          1222333554455667788888865    7777777654431  1223333345666777888888876


Q ss_pred             C
Q 041916          228 N  228 (359)
Q Consensus       228 ~  228 (359)
                      .
T Consensus       339 ~  339 (1081)
T KOG0309|consen  339 D  339 (1081)
T ss_pred             c
Confidence            4

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.89  E-value=1.9e-06  Score=76.59  Aligned_cols=172  Identities=12%  Similarity=0.092  Sum_probs=111.8

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCcceEEEeccCC------
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS----------GGTVTMWKPTTAAPLIKMLCHQG------  103 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~----------dg~v~lwd~~~~~~~~~~~~h~~------  103 (359)
                      +.|.+.|..+++.+..+.....+- .+ +|||++.|+++..          +..|.+||+.+.+.+..+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999999998665443 35 9999987777654          78999999999999888764222      


Q ss_pred             -CeEEEEEcCCCCEEEEEe-C-CCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccc-e
Q 041916          104 -PVSALAFHPNGHLMATSG-K-ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYS-R  177 (359)
Q Consensus       104 -~v~~i~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~-~  177 (359)
                       ....++++|||++|++.. . +..|.+.|+.+++.+.++  ++...-...+++.+++.+.||......+...+.... .
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence             224789999999999877 3 689999999999998888  333333444444444555555544443333222110 0


Q ss_pred             e-ecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEc
Q 041916          178 Y-MGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       178 ~-~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~  215 (359)
                      . .-+.. ...-...-.|.+ +|.++.+... |.+.++..
T Consensus       185 ~~vf~~~-~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~  222 (352)
T TIGR02658       185 TEVFHPE-DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDL  222 (352)
T ss_pred             eeeecCC-ccccccCCceEcCCCcEEEEecC-CeEEEEec
Confidence            0 00000 000001114566 7877777666 77777763

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=8.6e-09  Score=87.48  Aligned_cols=124  Identities=14%  Similarity=0.199  Sum_probs=98.8

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 041916           17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-----EIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~   90 (359)
                      ...++.++.|...++++..|..+|.|..+|++.+     .+...+ .|.+.|+++..-. ++.+|++.+.+|.|.+||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            3345677888888899999999999999999864     344444 4888999988766 67889999999999999998


Q ss_pred             CCcc---eEEEeccCCCeEE--EEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc
Q 041916           91 TAAP---LIKMLCHQGPVSA--LAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP  141 (359)
Q Consensus        91 ~~~~---~~~~~~h~~~v~~--i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  141 (359)
                      .-++   +..+.+|...-.-  +.+++....+++++.|...++|.++.+..+.+++
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            7766   8888888553222  3345666788889999999999999999988883

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.88  E-value=2.1e-07  Score=76.60  Aligned_cols=141  Identities=13%  Similarity=-0.023  Sum_probs=101.7

Q ss_pred             EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEE--EeccCCCeEEE
Q 041916           32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-APLIK--MLCHQGPVSAL  108 (359)
Q Consensus        32 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-~~~~~--~~~h~~~v~~i  108 (359)
                      -+..++.|.++++.++..+..-..+....-.+.+++.++++.++++.+....|..|.+... ..+..  .....+.-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            3555677888888888654332222222233789999999999999999999999988643 32222  22334445678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec-------cCCceeEEEcCCc---eEEEEc-CCcEEEEcCCCCC
Q 041916          109 AFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL-------PGHAKTLDFSQKG---LLAVGT-GSFVQILGDFSGS  172 (359)
Q Consensus       109 ~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-------~~~i~~~~~s~~g---l~~~~~-d~~i~i~d~~~~~  172 (359)
                      +|+.....+|++..||++.|||+|.. .+....       .|.+..+.|++-|   ++..+. -+.+.+.|+++..
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            99999999999999999999999974 333332       4678999999977   555554 4899999988763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.87  E-value=3.7e-07  Score=81.47  Aligned_cols=193  Identities=18%  Similarity=0.150  Sum_probs=129.6

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCC---------------eEEEEECCCCeEEEEEecCCCC--e
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFG---------------QLRYQDVTMGEIVGNFRTGLGR--T   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~--v   63 (359)
                      |.+|+ ..+..+.. -.|..+.-+.|+|.++||.+-+..+               .+.+||+.+|..+..+..-..+  .
T Consensus        55 V~~~~g~~~~~l~~-~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~  133 (561)
T COG5354          55 VECWGGPSKAKLVR-FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG  133 (561)
T ss_pred             eEEccccchhheee-eecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc
Confidence            56777 44443322 3477889999999999999976533               4899999999999999876655  4


Q ss_pred             E-EEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEEEeccCCCeEEEEEcCCCC--EEEE-----EeCCCeEEEEEc
Q 041916           64 D-VMRVNPFNGVVSLGHSGGTVTMWKPTTAA----PLIKMLCHQGPVSALAFHPNGH--LMAT-----SGKECKIKIWDL  131 (359)
Q Consensus        64 ~-~~~~sp~~~~l~sg~~dg~v~lwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~--~l~~-----~~~d~~i~iwd~  131 (359)
                      + -+.|+-+..++|-- ....++++++ ++.    +...+.  ...|...+|+|.|+  .|+.     .+.++++++|.+
T Consensus       134 Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         134 WPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             cceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence            4 78898888776654 3346899997 332    222222  35688899999643  3444     356789999999


Q ss_pred             CCceeeEec---cCCceeEEEcCCc--eEE-E-E---------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe
Q 041916          132 RKYEVLQTL---PGHAKTLDFSQKG--LLA-V-G---------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR  195 (359)
Q Consensus       132 ~~~~~~~~~---~~~i~~~~~s~~g--l~~-~-~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  195 (359)
                      ..+..+.+.   ...-..+.|.+.|  ++. + .         ....++++++...  .+.....-    .++|.+++|.
T Consensus       210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~~~~----~~pVhdf~W~  283 (561)
T COG5354         210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVEKDL----KDPVHDFTWE  283 (561)
T ss_pred             cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccceeccc----cccceeeeec
Confidence            876665443   4455678899998  221 1 1         1257888886533  22222122    2389999999


Q ss_pred             eCCCEEEEEc
Q 041916          196 PYEDVLGIGH  205 (359)
Q Consensus       196 p~~~~l~~~~  205 (359)
                      |.++.+++.+
T Consensus       284 p~S~~F~vi~  293 (561)
T COG5354         284 PLSSRFAVIS  293 (561)
T ss_pred             ccCCceeEEe
Confidence            9998877655

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=9.9e-09  Score=60.58  Aligned_cols=39  Identities=26%  Similarity=0.509  Sum_probs=37.1

Q ss_pred             CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           50 GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        50 ~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      |+++..+.+|.++|.+|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=5.4e-08  Score=79.67  Aligned_cols=158  Identities=13%  Similarity=0.138  Sum_probs=98.1

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEec-CCCCeEEEEEcCCCCEEEEEe-----CCC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRT-GLGRTDVMRVNPFNGVVSLGH-----SGG   82 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~sg~-----~dg   82 (359)
                      ..+++..|.++ .+-+.+-.+.-+++++.||.+.+++.+.-. ..+.+.. |.+ -.+.+....++.+.++.     .-+
T Consensus        81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d  159 (319)
T KOG4714|consen   81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD  159 (319)
T ss_pred             ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeecc
Confidence            35566666666 444445556789999999999999976411 1111111 111 11122222334444432     123


Q ss_pred             eEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---e
Q 041916           83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---L  154 (359)
Q Consensus        83 ~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l  154 (359)
                      ..+.|+++..+.+..-.--...|++++-+| ..+.+++|+.||.+.+||.|+......+    +..+..+-|+|..   +
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            455666653322211111123489999999 4556788889999999999987433332    5688999999976   9


Q ss_pred             EEEEcCCcEEEEcCC
Q 041916          155 LAVGTGSFVQILGDF  169 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~  169 (359)
                      ++++.||.+--||..
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999954

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=8.1e-09  Score=60.94  Aligned_cols=38  Identities=21%  Similarity=0.622  Sum_probs=36.1

Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD  130 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd  130 (359)
                      +++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=4.1e-08  Score=83.41  Aligned_cols=153  Identities=12%  Similarity=0.175  Sum_probs=109.1

Q ss_pred             cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-E--EEEEecCC-----CCeEEEEEcCCC-CEEEEEeCCCeEEE
Q 041916           17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-I--VGNFRTGL-----GRTDVMRVNPFN-GVVSLGHSGGTVTM   86 (359)
Q Consensus        17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~~~-----~~v~~~~~sp~~-~~l~sg~~dg~v~l   86 (359)
                      .|+-. ++++++.|+..++++. |=.|.+|++.--. .  +.-++.+.     .-|++..|+|.. +.++..+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            46555 9999999999888875 7789999986322 1  22223232     247888999965 67888899999999


Q ss_pred             EeCCCCcceE----E------------EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEecc--------
Q 041916           87 WKPTTAAPLI----K------------MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTLP--------  141 (359)
Q Consensus        87 wd~~~~~~~~----~------------~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~--------  141 (359)
                      .|+++.....    .            +..--..|.++.|+++|+||++-.. -+|++||+. ..+++.+++        
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            9998542211    0            1111246789999999999998765 689999994 455555441        


Q ss_pred             -------CCc---eeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          142 -------GHA---KTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       142 -------~~i---~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                             ..|   ..++|+.++  +++|+..+..++|++..+
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                   122   568899887  788889999999996554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.86  E-value=9.9e-07  Score=80.79  Aligned_cols=206  Identities=19%  Similarity=0.172  Sum_probs=122.8

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-----EEEEcCCCCE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-----VMRVNPFNGV   74 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~   74 (359)
                      |+.+| .+|+++........+ .....  .+..++.++.+|.|..||..+|+.+..+......+.     +...  .+..
T Consensus       117 l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~  192 (377)
T TIGR03300       117 VIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG  192 (377)
T ss_pred             EEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE
Confidence            45667 577776655443333 11222  234566677889999999999998877764332211     1111  1246


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEecc-C-C-----CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEeccC-Cc
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCH-Q-G-----PVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLPG-HA  144 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h-~-~-----~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~i  144 (359)
                      ++.++.+|.+..+|+.+++.+...... . +     ....+.-+|  .+..+++++.+|.+..||..+++.+..... ..
T Consensus       193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~  272 (377)
T TIGR03300       193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY  272 (377)
T ss_pred             EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc
Confidence            778888999999999999766543211 0 0     000111112  356788888999999999999987766632 22


Q ss_pred             eeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          145 KTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       145 ~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ..+....+.+++++.+|.|..+|..++. .+......   ......+...  .+..|++++.+|.+.++...+
T Consensus       273 ~~p~~~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       273 QGPAVDDNRLYVTDADGVVVALDRRSGS-ELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             cCceEeCCEEEEECCCCeEEEEECCCCc-EEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            2333333337778889999999987763 22222111   0111222222  367888888888777766433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.83  E-value=4.6e-06  Score=69.77  Aligned_cols=190  Identities=16%  Similarity=0.140  Sum_probs=120.4

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRT---GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~---~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      ++.+++|++||.. .|..|.|-..++.  .++.....   ....-.-++||||+.+||.+...|+|++||+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5677889988876 4668888776653  23333332   223467899999999999999999999999864 333333


Q ss_pred             ec-------cCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCC-----ceeeEec------cCCceeEEEcCCc-
Q 041916           99 LC-------HQGPVSALAFHPN------GHLMATSGKECKIKIWDLRK-----YEVLQTL------PGHAKTLDFSQKG-  153 (359)
Q Consensus        99 ~~-------h~~~v~~i~~~~~------~~~l~~~~~d~~i~iwd~~~-----~~~~~~~------~~~i~~~~~s~~g-  153 (359)
                      ..       -...|..+.|-+.      ...|++.+.+|.++-|-+..     ++..++|      +..|.++.++|.. 
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            21       1235666667542      22477777888888776532     3344444      4578999999987 


Q ss_pred             -eEEEEc-C----------CcEEEEcCCCCCCccce-------------------ee-----cccCCCCcceEEEEEeeC
Q 041916          154 -LLAVGT-G----------SFVQILGDFSGSHNYSR-------------------YM-----GHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       154 -l~~~~~-d----------~~i~i~d~~~~~~~~~~-------------------~~-----~~~~~~~~~v~~~~~~p~  197 (359)
                       ++++|. .          .-+..|.+.++.+-...                   +.     .........|..+..+||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence             444442 1          13566765443211110                   00     000113446889999999


Q ss_pred             CCEEEEEcCCCeEEEEEc
Q 041916          198 EDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       198 ~~~l~~~~~dg~~~i~~~  215 (359)
                      |..|++.+.+|.+.+|..
T Consensus       241 g~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CCEEEEEEcCCeEEEEec
Confidence            999999998887777653

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.82  E-value=1.5e-08  Score=82.84  Aligned_cols=112  Identities=16%  Similarity=0.223  Sum_probs=78.6

Q ss_pred             EEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcce
Q 041916           22 LKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPL   95 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~   95 (359)
                      .+.++...++++.++..     -+..+.|+++.-+.+..-......|++++-+|.. .++++|+.||.+.+||.+.....
T Consensus       136 as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p  215 (319)
T KOG4714|consen  136 ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP  215 (319)
T ss_pred             cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch
Confidence            33444445555554431     2345566655433222111223349999999965 57788999999999999987543


Q ss_pred             -EEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 041916           96 -IKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        96 -~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~  133 (359)
                       ..+.+|..+++.+.|+| ++..|++++.||.+..||..+
T Consensus       216 ~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence             44569999999999999 778899999999999999874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.81  E-value=1.9e-07  Score=79.42  Aligned_cols=170  Identities=12%  Similarity=0.187  Sum_probs=118.2

Q ss_pred             CeEEEe--CCCcEEEEecc--CCCeEEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCCC
Q 041916            1 YPYIYN--RDGTELHCLKE--HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd--~~g~~~~~l~~--h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      +|+||-  ..|+--..+..  ...++++++.+....|+.|-..|++.-+.+..    ...++....|...+..+-|+-..
T Consensus        47 tvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~  126 (404)
T KOG1409|consen   47 TVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH  126 (404)
T ss_pred             eeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc
Confidence            466776  44444333332  23349999999999999999999998887753    23444555677777777776655


Q ss_pred             CEEEEEeCCCe---------------------------------------EEEEe--CCCCcceEEEeccCCCeEEEEEc
Q 041916           73 GVVSLGHSGGT---------------------------------------VTMWK--PTTAAPLIKMLCHQGPVSALAFH  111 (359)
Q Consensus        73 ~~l~sg~~dg~---------------------------------------v~lwd--~~~~~~~~~~~~h~~~v~~i~~~  111 (359)
                      ..+++.+.|..                                       |.+-.  .+...++.++.+|.+.+.+++|.
T Consensus       127 e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd  206 (404)
T KOG1409|consen  127 EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD  206 (404)
T ss_pred             eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence            56665554432                                       22111  12334566778999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeE-ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916          112 PNGHLMATSGKECKIKIWDLRKYEVLQ-TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       112 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                      |....|++|..|..|.+||+...+-+. .+   ...|..+...+.-  +++++.||.|.+|++..
T Consensus       207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  207 PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            999999999999999999997644222 22   4456666665554  89999999999999754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.81  E-value=1.5e-06  Score=87.35  Aligned_cols=204  Identities=14%  Similarity=0.105  Sum_probs=132.4

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCCC
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~   73 (359)
                      |+||+++|....+-..-.+. .+++|.|.|+++|+...   ...|.+|.- +|-.-..|.    .....|..++|++++.
T Consensus       239 iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  239 IRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             EEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            78999888876666655555 89999999999998764   356777773 343323332    3456799999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcc--eEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEE
Q 041916           74 VVSLGHSGGTVTMWKPTTAAP--LIKML-CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDF  149 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~--~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~  149 (359)
                      .||....|. |.+|...+..-  .+.+. .....+..+.|+| +...|...+.+|.+..+++.-....        +-..
T Consensus       318 iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~--------s~~~  388 (928)
T PF04762_consen  318 ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR--------SPGS  388 (928)
T ss_pred             EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe--------cCCC
Confidence            999977665 99998776532  12222 1223455699999 4555777777787777765311100        0011


Q ss_pred             cCC--ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          150 SQK--GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       150 s~~--gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +|+  |.+++-.+..+.+-.+.... ..-++......-..+|.+++|++++..+++-..||.+.++...
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~-VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~  456 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAV-VPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD  456 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccC-CCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence            222  25566666778887765441 1111111111123489999999999889999999988887743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.80  E-value=3.5e-06  Score=77.20  Aligned_cols=207  Identities=15%  Similarity=0.042  Sum_probs=128.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |+-+| .+|+.+..+.-...+ .....  ++..++.++.++.|..+|..+|+.+...............  .+..++.++
T Consensus        77 v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~  152 (377)
T TIGR03300        77 VVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRT  152 (377)
T ss_pred             EEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEEC
Confidence            56677 778877666655544 33332  4567788888999999999999988776643221111111  245677788


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--CC---------
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVS-----ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--GH---------  143 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~-----~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~---------  143 (359)
                      .+|.|..||+.+++.+..+......+.     +..+  .+..++.++.++.+..+|+.+++.+....  .+         
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~  230 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL  230 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence            899999999999988777653322111     1111  23467788888999999999988765441  11         


Q ss_pred             --c-eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          144 --A-KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       144 --i-~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                        + .+..+. ++ +++++.+|.+..||..++. ...... ..     ....+  ...+..+++++.+|.+..+....+.
T Consensus       231 ~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~-~~W~~~-~~-----~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       231 VDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGR-VLWKRD-AS-----SYQGP--AVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             hccCCccEEE-CCEEEEEEcCCEEEEEECCCCc-EEEeec-cC-----CccCc--eEeCCEEEEECCCCeEEEEECCCCc
Confidence              0 111222 34 7778889999999987763 222211 10     11112  2346677778888877777654443


Q ss_pred             CccccccC
Q 041916          220 PNFDSWVA  227 (359)
Q Consensus       220 ~~~~~~~~  227 (359)
                         .+|..
T Consensus       301 ---~~W~~  305 (377)
T TIGR03300       301 ---ELWKN  305 (377)
T ss_pred             ---EEEcc
Confidence               24654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.79  E-value=2.1e-07  Score=79.23  Aligned_cols=206  Identities=16%  Similarity=0.113  Sum_probs=142.2

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      ++.+++|.+. +....-|-..-+.+.+.|.+++||--. .++.-..+. .-..+++++.+++....|++|-.+|++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            4567788876 777777877889999999999999644 344333332 2346789999999999999999999999886


Q ss_pred             CC----CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCc
Q 041916           89 PT----TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSF  162 (359)
Q Consensus        89 ~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~  162 (359)
                      +.    ....+..+..|...|..+.|+-...++++++.|..+.---.+.+.-+..+  ....+++.+.-.-.+.+...|.
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq  176 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ  176 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence            53    44556677799999999999999999999999987765555554443333  2222222221111222333454


Q ss_pred             EEEEcCC-CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916          163 VQILGDF-SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN  221 (359)
Q Consensus       163 i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~  221 (359)
                      |..-.+. +.-.++..+.+|..    .+++++|.|....|.+|..|..+.+|..+...+.
T Consensus       177 vt~lr~~~~~~~~i~~~~~h~~----~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  177 ITMLKLEQNGCQLITTFNGHTG----EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             eEEEEEeecCCceEEEEcCccc----ceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence            4443322 23345666777766    8999999999999999988887777666554443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.79  E-value=5.6e-07  Score=82.51  Aligned_cols=210  Identities=16%  Similarity=0.184  Sum_probs=127.8

Q ss_pred             EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEe---cC-CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-E
Q 041916            4 IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASIN---KF-GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-L   77 (359)
Q Consensus         4 iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s   77 (359)
                      +-|.+|.....+...... ..-.|+|++..++..+   .. ..+.++|+.++.....+. ..+.-...+|+|||+.|+ +
T Consensus       177 ~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~  255 (425)
T COG0823         177 LGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFS  255 (425)
T ss_pred             EEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEE
Confidence            334446666666555555 7789999987655432   22 469999999887544433 233445678999997655 4


Q ss_pred             EeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEec--cCCceeEEEc
Q 041916           78 GHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQTL--PGHAKTLDFS  150 (359)
Q Consensus        78 g~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~s  150 (359)
                      ...||.  |.++|+..+. ...+....+.-+.-.|+|||++|+..+. .|  .|.++|+......+..  .+.-....||
T Consensus       256 ~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~S  334 (425)
T COG0823         256 SSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWS  334 (425)
T ss_pred             ECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCC
Confidence            556666  5666777665 3335544555557889999999887664 33  5777777766542222  2223378899


Q ss_pred             CCc--eEEEEc-CCc--EEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916          151 QKG--LLAVGT-GSF--VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN  221 (359)
Q Consensus       151 ~~g--l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~  221 (359)
                      |+|  ++..+. +|.  |.++|+.++.. .. ......    ......|.|++..+...+..+....+...+.++.
T Consensus       335 pdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~-~lt~~~----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~  404 (425)
T COG0823         335 PDGDKIVFESSSGGQWDIDKNDLASGGK-IR-ILTSTY----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGR  404 (425)
T ss_pred             CCCCEEEEEeccCCceeeEEeccCCCCc-EE-Eccccc----cCCCCCcCCCCceEEEeccCCCCceEEEeeccce
Confidence            999  333332 454  66777655533 22 222222    4556678899988777666553344443444443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.79  E-value=1.1e-05  Score=69.29  Aligned_cols=188  Identities=14%  Similarity=0.083  Sum_probs=118.0

Q ss_pred             EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           22 LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN-PFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        22 ~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      -++.|.+ ++.++++--..+.|..|+..++... .+....  ...+++. +++.+ +.+..++ +.++|+.+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEee
Confidence            3678998 6777777667899999999887643 333332  6777887 66544 4455554 5566998875433332


Q ss_pred             c-----cCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEE-EcCC
Q 041916          100 C-----HQGPVSALAFHPNGHLMATSGKE--------CKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAV-GTGS  161 (359)
Q Consensus       100 ~-----h~~~v~~i~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~-~~d~  161 (359)
                      .     .....++++++|+|++.++....        |.|..++.. ++.....  -...+.|+|+|++  ++++ +..+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence            2     23457899999999977776643        568888877 4433333  3456899999999  4444 4567


Q ss_pred             cEEEEcCCCCCCcc---ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          162 FVQILGDFSGSHNY---SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       162 ~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      .|..|++......+   ..+..... .....-.+++..+|++.++....+.+.++.+.
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             eeEEEeccccccceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            89988865432211   22222211 11237789999999877777667766666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=8.8e-09  Score=97.26  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=104.9

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEe
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWK   88 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd   88 (359)
                      ..+|+.|... +|++|+.+.++|+.|+..|.|++|++.+|.....+.+|.++|+-+.-+-+|..+++.+.-.  ..-+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4667788887 9999999999999999999999999999999999999999999999888998766554332  467898


Q ss_pred             CCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC------CceeEEEcCCc
Q 041916           89 PTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG------HAKTLDFSQKG  153 (359)
Q Consensus        89 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~------~i~~~~~s~~g  153 (359)
                      +.+ +.+.++|..    -.++.|+.....-+.|+......+||+.++.++.++ .+      .-++..|||+.
T Consensus      1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             cccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence            763 455555542    356778765444444554456888999888877764 21      22667788876

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.74  E-value=1.1e-06  Score=80.35  Aligned_cols=121  Identities=12%  Similarity=0.270  Sum_probs=86.1

Q ss_pred             EEEeccCCCeEEEEEec-CCCEEEEE----ecCCe----EEEEECCCCeEE----EEEecCCCCeEEEEEcCCCCEEEEE
Q 041916           12 LHCLKEHGAVLKLQFLR-NHFLLASI----NKFGQ----LRYQDVTMGEIV----GNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus        12 ~~~l~~h~~~~~l~~s~-~~~~l~s~----~~dg~----i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +..++...++.++.||- +.+.+.|.    +.+|.    -++|++..++..    .++ ...+.|.|++++|+...++.|
T Consensus       199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlG  277 (545)
T PF11768_consen  199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLG  277 (545)
T ss_pred             EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEE
Confidence            44455555668888876 34555543    22333    357777655422    122 356789999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                      +.||+|.+||...+...  +....-..+.++|+|+|.++++|+..|.+.+||+.-..
T Consensus       278 C~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  278 CEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99999999998766332  22334456889999999999999999999999987543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=6.3e-08  Score=89.64  Aligned_cols=189  Identities=11%  Similarity=0.093  Sum_probs=132.6

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-e-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-R-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .++.+|.+. .-+.|+.+.+.|-|+..+|.|.+|-+-.|.-.... . -..+-|.+|+|+.+|..|+..-.||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            567889987 99999999999999999999999999877533222 1 23456889999999999999999999887666


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-------ee-e------EeccCCceeEEEc-----
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-------EV-L------QTLPGHAKTLDFS-----  150 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~-~------~~~~~~i~~~~~s-----  150 (359)
                      .... +.--.-.-.....+.|++|...++.+-.+|.+.+||....       .+ +      ..++..+..+.|.     
T Consensus       145 dGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  145 DGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             ccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            5322 2110000112346889999999888888999999997642       11 1      1113346667764     


Q ss_pred             ---CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          151 ---QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       151 ---~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                         |+.  ++++-..|.+.|....++..+...-.+  .    .+..+.|+++|.+|++++.+.
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m----~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M----KIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c----EeecceecCCCcEEEEccCcc
Confidence               355  555556788888865555444333222  3    799999999999999988764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=2.5e-07  Score=86.49  Aligned_cols=145  Identities=11%  Similarity=0.136  Sum_probs=117.2

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEeC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN------------GVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~sg~~dg~v~lwd~   89 (359)
                      .++.|+|.| ++|.|+. ..|.+-|..+-+.+.++..|...|+.+.|.|-.            -.||++...|.|.+||.
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            778899877 5677664 489999999999999999999999999998742            25788888999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc---eEEEEc
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHP---NG-HLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG---LLAVGT  159 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g---l~~~~~  159 (359)
                      ..+..+..+..|.+++..++|-|   +. ..|+......+|.+|+..+|+.+..+.   ....|+.+.|-.   +...+.
T Consensus        97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s  176 (1062)
T KOG1912|consen   97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS  176 (1062)
T ss_pred             hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence            99888888889999999999976   44 457777778899999999999887772   234678887754   666666


Q ss_pred             CCcEEEEcC
Q 041916          160 GSFVQILGD  168 (359)
Q Consensus       160 d~~i~i~d~  168 (359)
                      .|.+.+-+.
T Consensus       177 ~g~vl~~~~  185 (1062)
T KOG1912|consen  177 KGFVLSCKD  185 (1062)
T ss_pred             CceEEEEec
Confidence            777776664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=2.3e-07  Score=77.93  Aligned_cols=182  Identities=11%  Similarity=0.164  Sum_probs=120.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCC-----eEEEEEecCCC------------CeEEEEEcCCC--CEEEEEeCC
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMG-----EIVGNFRTGLG------------RTDVMRVNPFN--GVVSLGHSG   81 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~sp~~--~~l~sg~~d   81 (359)
                      ++++.|...|.||++|...|.|.+|.-...     +....|++|..            .|..+.|..++  ..++..+.|
T Consensus        29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd  108 (460)
T COG5170          29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND  108 (460)
T ss_pred             eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence            499999999999999999999999985432     23344555542            47788887665  456667799


Q ss_pred             CeEEEEeCCCC-------------------cce-----------------------EEE-eccCCCeEEEEEcCCCCEEE
Q 041916           82 GTVTMWKPTTA-------------------APL-----------------------IKM-LCHQGPVSALAFHPNGHLMA  118 (359)
Q Consensus        82 g~v~lwd~~~~-------------------~~~-----------------------~~~-~~h~~~v~~i~~~~~~~~l~  118 (359)
                      .+|++|-+...                   .++                       +.+ .+|+-.|++|+|+.|...++
T Consensus       109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l  188 (460)
T COG5170         109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL  188 (460)
T ss_pred             ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence            99999976422                   000                       011 24666789999999988887


Q ss_pred             EEeCCCeEEEEEcCCcee----eEec-------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc-----cce-e
Q 041916          119 TSGKECKIKIWDLRKYEV----LQTL-------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN-----YSR-Y  178 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~~----~~~~-------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~-----~~~-~  178 (359)
                      ++ .|-.|.+|++.-...    +-.-       ..-|++..|+|..   +.-.++.|.|++-|++...-+     +.. .
T Consensus       189 Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~  267 (460)
T COG5170         189 SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT  267 (460)
T ss_pred             ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence            75 467899998864321    1111       2247899999987   444566799999998743111     110 0


Q ss_pred             e---cccC--CCCcceEEEEEeeCCCEEEE
Q 041916          179 M---GHSM--VKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       179 ~---~~~~--~~~~~v~~~~~~p~~~~l~~  203 (359)
                      .   .+..  .--..|.++.|+++|+++++
T Consensus       268 ~D~v~~~ff~eivsSISD~kFs~ngryIls  297 (460)
T COG5170         268 IDGVDVDFFEEIVSSISDFKFSDNGRYILS  297 (460)
T ss_pred             cCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence            0   0100  01236889999999998766

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=5.4e-07  Score=85.15  Aligned_cols=224  Identities=17%  Similarity=0.158  Sum_probs=134.5

Q ss_pred             EEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916            3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG   82 (359)
Q Consensus         3 ~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg   82 (359)
                      -||-.+|++-......-.+++++|+|....|++|-.-|.+.+|...+.+.-.....|..+|..+.|||+|..++++..-|
T Consensus        44 tIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   44 TIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             EEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence            34444454433333333347899999999999999999999999988777666778999999999999999999999999


Q ss_pred             eEEEEeCCCCcceE----------------EEe-----------------ccCCCe------------EEEE--EcCCCC
Q 041916           83 TVTMWKPTTAAPLI----------------KML-----------------CHQGPV------------SALA--FHPNGH  115 (359)
Q Consensus        83 ~v~lwd~~~~~~~~----------------~~~-----------------~h~~~v------------~~i~--~~~~~~  115 (359)
                      .|.+|.......+.                .+.                 +....+            .+..  =.|+|.
T Consensus       124 ~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~  203 (1416)
T KOG3617|consen  124 SVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGT  203 (1416)
T ss_pred             eeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCc
Confidence            99999765211100                000                 000000            0010  125788


Q ss_pred             EEEEEeCCCeEEEEEcCCce-eeEeccCC-----------ce--------eEEEc-CCc--------eEEE---EcCCcE
Q 041916          116 LMATSGKECKIKIWDLRKYE-VLQTLPGH-----------AK--------TLDFS-QKG--------LLAV---GTGSFV  163 (359)
Q Consensus       116 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~~-----------i~--------~~~~s-~~g--------l~~~---~~d~~i  163 (359)
                      .++.++.+|+|+..|-.... .+....+.           +.        ++-+. |.|        -+++   +..|.|
T Consensus       204 ~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgi  283 (1416)
T KOG3617|consen  204 EFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGI  283 (1416)
T ss_pred             EEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcc
Confidence            89999999999888854321 12222111           11        11111 111        0010   111111


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC----CCCccccccCCC
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS----GEPNFDSWVANP  229 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~----~d~~~~~~~~~~  229 (359)
                      -+=. ..+  .+..-.......+..+++++++..+..|..|...|.+.+|.-..    +++.++.|.++.
T Consensus       284 A~sE-ssG--vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~  350 (1416)
T KOG3617|consen  284 ACSE-SSG--VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG  350 (1416)
T ss_pred             cccc-ccc--cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC
Confidence            1111 000  11111111111345799999999999999999999998886433    466788888753

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.68  E-value=4.2e-07  Score=86.50  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=108.2

Q ss_pred             ecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCcceEE
Q 041916           27 LRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        27 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~~~~~~~   97 (359)
                      ..++++|.+|...|+|.+-|..+.+.++++.+|.+.|..+..  .|+.|++++.         |..|.|||+++...+..
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            346789999999999999999999999999999999977665  5778888764         56789999998877766


Q ss_pred             EeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-ee---eEec---cCCceeEEEcCCc--eEEEEcCCcEEEEc
Q 041916           98 MLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKY-EV---LQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILG  167 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~-~~---~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d  167 (359)
                      +.-+.++ .-+.|+|. ...+++++..|...+-|..+. .+   +..+   ...+..+++|++|  ++.+..+|.|.+|-
T Consensus       262 I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  262 IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            6656665 56788884 456888889999999994432 22   1111   3458999999999  55666789999997

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.67  E-value=6.1e-06  Score=69.02  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=100.5

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-------CCCCeEEEEEcCCC------CEEEEEeCCCeEEEEe
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-------GLGRTDVMRVNPFN------GVVSLGHSGGTVTMWK   88 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~sp~~------~~l~sg~~dg~v~lwd   88 (359)
                      +.++||||+.+||.+...|+|++||+.. ..+..+..       -...|..|.|.+..      ..|++-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            8899999999999999999999999874 43444332       12456777775432      2456666777777776


Q ss_pred             CCCC-----cceEEEe---ccCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCcee----eE-------
Q 041916           89 PTTA-----APLIKML---CHQGPVSALAFHPNGHLMATSGKE-----------CKIKIWDLRKYEV----LQ-------  138 (359)
Q Consensus        89 ~~~~-----~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~----~~-------  138 (359)
                      +..+     +...++.   .++..|+++.++|..++|++||..           .-+..|.+-++.|    +.       
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            5322     1222332   346789999999998888877631           1266675533211    00       


Q ss_pred             ------------e---c------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          139 ------------T---L------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       139 ------------~---~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                                  .   +      ...|..|..||||  ++++..+|.|.+|++..-
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                        0   0      2347889999999  777789999999997654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.66  E-value=4.6e-06  Score=82.01  Aligned_cols=191  Identities=15%  Similarity=0.226  Sum_probs=124.3

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC----CCCcce
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP----TTAAPL   95 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~----~~~~~~   95 (359)
                      .+.++.|..+.+-++.+..+|.|.+-|..+.... ....-...|.+++||||+..++..+.++++.+-+-    -..+++
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L  148 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL  148 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence            3588899999888888889999999998776422 22223467999999999999999988888876542    111111


Q ss_pred             -------------------EEEeccC---------------------CCeEEEEEcCCCCEEEEEe-----CCCeEEEEE
Q 041916           96 -------------------IKMLCHQ---------------------GPVSALAFHPNGHLMATSG-----KECKIKIWD  130 (359)
Q Consensus        96 -------------------~~~~~h~---------------------~~v~~i~~~~~~~~l~~~~-----~d~~i~iwd  130 (359)
                                         ..|.+..                     +.=++|+|--||.++|+..     ....|++||
T Consensus       149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d  228 (1265)
T KOG1920|consen  149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD  228 (1265)
T ss_pred             ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence                               1122111                     1124599999999998843     337999999


Q ss_pred             cCCceeeEec---cCCceeEEEcCCc-eEEE----EcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCC
Q 041916          131 LRKYEVLQTL---PGHAKTLDFSQKG-LLAV----GTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       131 ~~~~~~~~~~---~~~i~~~~~s~~g-l~~~----~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      -. |..-..-   .+--.+++|-|.| ++++    ++++.|.+|. ++|..-   ...+....    ..|..++|+.++.
T Consensus       229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de----~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDE----KEVEELAWNSNSD  302 (1265)
T ss_pred             cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccc----cchheeeecCCCC
Confidence            77 3322111   2334789999999 4443    2567899998 444211   11122222    2489999999999


Q ss_pred             EEEE---EcCCCeEEEEEcCC
Q 041916          200 VLGI---GHSMGWSSILVPGS  217 (359)
Q Consensus       200 ~l~~---~~~dg~~~i~~~~~  217 (359)
                      .|++   ......+.+|.++.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ceeeeecccccceEEEEEecC
Confidence            9998   33444466665544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.65  E-value=1.1e-05  Score=68.69  Aligned_cols=167  Identities=17%  Similarity=0.133  Sum_probs=107.6

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-ecCCC---CeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-RTGLG---RTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~---~v~~~~~sp~~~~l   75 (359)
                      |+.|| .+|+.+..+...... ...  ..++..+++++.++.|..+|..+|+.+... .....   ....+....++..+
T Consensus        48 l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  125 (238)
T PF13360_consen   48 LYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRL  125 (238)
T ss_dssp             EEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEE
T ss_pred             EEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEE
Confidence            67888 799988877764443 322  223455666667889999999999999884 43211   11222333347788


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGP----------VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA  144 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i  144 (359)
                      +++..+|.|..+|+.+|+.+.........          +.+-.+..++ .++.++.++.+..+|+.+++.+.... ..+
T Consensus       126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~  204 (238)
T PF13360_consen  126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGI  204 (238)
T ss_dssp             EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-E
T ss_pred             EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCc
Confidence            88888999999999999998887654322          1122222244 77777777754444999998665333 222


Q ss_pred             eeEEEcCCc-eEEEEcCCcEEEEcCCCC
Q 041916          145 KTLDFSQKG-LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~  171 (359)
                      ..+....++ +++++.++.|.+||+.++
T Consensus       205 ~~~~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  205 YSLPSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             CECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred             cCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence            222223334 666667999999998877

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.6e-06  Score=80.83  Aligned_cols=179  Identities=10%  Similarity=-0.009  Sum_probs=119.9

Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCC-----eEEEEeCCCC------
Q 041916           25 QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGG-----TVTMWKPTTA------   92 (359)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg-----~v~lwd~~~~------   92 (359)
                      +|++.+..+|.|+.+|.|.+++- +-+.++.++.+...+...-|.-++ .+|++-+.|+     .|++|++...      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            57788899999999999999884 345557788877763333344444 6777766554     5899998632      


Q ss_pred             cce--EEEec-----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---C--ceeeEec--cCCceeEEEcCCc--eEE
Q 041916           93 APL--IKMLC-----HQGPVSALAFHPNGHLMATSGKECKIKIWDLR---K--YEVLQTL--PGHAKTLDFSQKG--LLA  156 (359)
Q Consensus        93 ~~~--~~~~~-----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~---~--~~~~~~~--~~~i~~~~~s~~g--l~~  156 (359)
                      .++  ..+..     .+.++.+++++.+-..+|+|=.+|.|.++.-.   .  .+.....  ..+|+.+++..++  ++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            222  11222     35678999999998899999999999998421   1  1111222  5689999999988  455


Q ss_pred             EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +..-..|.+|.+....+....+..|    |.++.|..|++....+++++..+
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~----G~~lnCss~~~~t~qfIca~~e~  236 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNN----GISLNCSSFSDGTYQFICAGSEF  236 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccC----CccceeeecCCCCccEEEecCce
Confidence            5556789999876432122334444    44899999988766566655544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=5.1e-05  Score=65.36  Aligned_cols=184  Identities=11%  Similarity=0.088  Sum_probs=122.4

Q ss_pred             EEEEEecC-CCEEEEEecCC-eEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEe-----CCCeEEEEeCC-C
Q 041916           22 LKLQFLRN-HFLLASINKFG-QLRYQDVTMGEIVGNFRTGLGRT--DVMRVNPFNGVVSLGH-----SGGTVTMWKPT-T   91 (359)
Q Consensus        22 ~~l~~s~~-~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~sg~-----~dg~v~lwd~~-~   91 (359)
                      ..++.+|+ +..++.+-.-| ...+||+.++.....+....+.-  -.-+|||||++|++.-     ..|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            56788884 45566665544 56799999999887776543322  2367999999999863     45889999998 5


Q ss_pred             CcceEEEeccCCCeEEEEEcCCCCEEEEEe------------------CCCeEEEEEcCCceeeEec-------cCCcee
Q 041916           92 AAPLIKMLCHQGPVSALAFHPNGHLMATSG------------------KECKIKIWDLRKYEVLQTL-------PGHAKT  146 (359)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~-------~~~i~~  146 (359)
                      ...+..+..|--.-..+.+.|||..|+++.                  .+-++.+.|..+|+.+...       .-++..
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            566777776655567789999998887773                  2345777788888877664       236899


Q ss_pred             EEEcCCc-eEEEE-cC-------CcEEEEcCCCCCCccceeeccc---CCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          147 LDFSQKG-LLAVG-TG-------SFVQILGDFSGSHNYSRYMGHS---MVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       147 ~~~s~~g-l~~~~-~d-------~~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +++.++| ++.+. ..       --|-+++...   .+..+....   ..-...+-+|++++++.++++.+-.|
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            9999999 33333 21       1345554221   122111100   00122689999999999887777655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.2e-06  Score=76.12  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             EEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 041916           13 HCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~   89 (359)
                      ..+..|... ..++|||..+ ++..++.+..|.|.|+.+..++.++..+ ..+++++|.-+. ++|++|..+|.|.+||+
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            344455555 9999999876 7888999999999999999999999888 789999998876 67888999999999999


Q ss_pred             CCC
Q 041916           90 TTA   92 (359)
Q Consensus        90 ~~~   92 (359)
                      +..
T Consensus       266 R~~  268 (463)
T KOG1645|consen  266 RQP  268 (463)
T ss_pred             cCC
Confidence            864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.55  E-value=9.1e-06  Score=74.53  Aligned_cols=109  Identities=8%  Similarity=0.000  Sum_probs=74.6

Q ss_pred             eEEEEEcCC-CCEEEEE----eCCCe----EEEEeCCCCcc--eEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916           63 TDVMRVNPF-NGVVSLG----HSGGT----VTMWKPTTAAP--LIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWD  130 (359)
Q Consensus        63 v~~~~~sp~-~~~l~sg----~~dg~----v~lwd~~~~~~--~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd  130 (359)
                      ..++.||-. ...+.+.    +.+|.    -++|++...+.  +.. --..++.|.+.+++|+...++.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            356777753 3444432    33443    34566654432  111 125678899999999999999999999999999


Q ss_pred             cCCceeeEec-cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          131 LRKYEVLQTL-PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       131 ~~~~~~~~~~-~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      ...+.....- .-.++.++|+|+|  +++++..|.+.+||+.-+
T Consensus       288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9876433222 3356999999999  555556699999997654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.54  E-value=2.1e-05  Score=72.48  Aligned_cols=207  Identities=16%  Similarity=0.151  Sum_probs=122.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV-MRVNP--FNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp--~~~~l~   76 (359)
                      |+-+| .+|+.+........+ .+....  +..++.++.++.|.-+|..+|+.+..+......+.. ..-+|  .+..++
T Consensus       132 l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~  209 (394)
T PRK11138        132 VYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAI  209 (394)
T ss_pred             EEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEE
Confidence            45566 677776665544433 222222  345666778899999999999998887643211100 00122  134567


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEecc-CCcee
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQG-------PVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKT  146 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~  146 (359)
                      .++.+|.+..+|..+++.+........       ....+..+|  .+..++.++.++.+..+|+.+++.+.... +....
T Consensus       210 ~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~  289 (394)
T PRK11138        210 VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVND  289 (394)
T ss_pred             EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccC
Confidence            788899999999999887665431110       011112233  35577778889999999999998776552 22223


Q ss_pred             EEEcCCceEEEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          147 LDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       147 ~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +....+.+++++.+|.+..+|..++......- ....     ...+...  .+..|++++.+|.+..+....
T Consensus       290 ~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~sp~v--~~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        290 FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-----LLTAPVL--YNGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-----cccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence            33332237888889999999987763222111 1111     1222222  256778888888777666544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=7.5e-07  Score=84.21  Aligned_cols=113  Identities=17%  Similarity=0.203  Sum_probs=91.3

Q ss_pred             CCCe-EEEEEecCCCEEEEEec----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916           18 HGAV-LKLQFLRNHFLLASINK----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        18 h~~~-~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~   92 (359)
                      ..++ +-.+|+|...++|+++.    .|+|.||- ++|++...+.. .-.+++++|+|..-.|+.|-.-|.+.+|..++.
T Consensus        14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             ccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence            3445 77899999999988764    58888886 56765443321 123567999999889999999999999998877


Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                      +.-.....|+.+|..+.|||+|..|+++..-|.|.+|...
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            6655566899999999999999999999999999999765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.50  E-value=2.9e-06  Score=71.49  Aligned_cols=187  Identities=12%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             eEEEEEecCC--CEEEEEecCCeEEEEECCCCe-------------------EEE-----------------------EE
Q 041916           21 VLKLQFLRNH--FLLASINKFGQLRYQDVTMGE-------------------IVG-----------------------NF   56 (359)
Q Consensus        21 ~~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~-------------------~~~-----------------------~~   56 (359)
                      +..+.|..++  ..++..+.|.+|++|.+....                   ++.                       .+
T Consensus        88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy  167 (460)
T COG5170          88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY  167 (460)
T ss_pred             hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence            3667776653  445556789999999875320                   000                       01


Q ss_pred             -ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEEeccC-----CCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916           57 -RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKMLCHQ-----GPVSALAFHPN-GHLMATSGKECKI  126 (359)
Q Consensus        57 -~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~-~~~l~~~~~d~~i  126 (359)
                       ..|.-.++++.|+.|...++++ .|-.|.+|++.-...   +.-+..|.     ..|++..|+|. .+.+...+..|.|
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             cccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence             2466678899999888777765 667899999764322   23333443     35789999994 4455556677999


Q ss_pred             EEEEcCCceee----Eec---------------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCC--
Q 041916          127 KIWDLRKYEVL----QTL---------------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV--  184 (359)
Q Consensus       127 ~iwd~~~~~~~----~~~---------------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--  184 (359)
                      ++-|+|.....    ..+               ...|..+.|+|+| ++.+-.--+|.|||......++.++..|...  
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHH
Confidence            99999953221    111               2357889999999 5555455899999988777777766544210  


Q ss_pred             ------CCcce---EEEEEeeCCCEEEEEcCCC
Q 041916          185 ------KGYQI---GKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       185 ------~~~~v---~~~~~~p~~~~l~~~~~dg  208 (359)
                            ....|   ..+.|+.+...+.+|+...
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N  359 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN  359 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCccccccccccc
Confidence                  00112   3356666666666655544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=5.1e-06  Score=78.38  Aligned_cols=173  Identities=12%  Similarity=0.067  Sum_probs=116.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEecc
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH  101 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h  101 (359)
                      .|++++  +.+|+.|+.+|.|++++.. |.+ .+...|...      ..+|.++++||.||+|.|-.+-+.....++. .
T Consensus        43 s~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f  111 (846)
T KOG2066|consen   43 SCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-F  111 (846)
T ss_pred             HHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-c
Confidence            455553  5789999999999999976 444 333344333      5679999999999999999988887766665 3


Q ss_pred             CCCeEEEEEcCC-----CCEEEEEeCCCeEEEEEcCC---cee--eEeccCCceeEEEcCCceEEEEcCCcEEEEcCCCC
Q 041916          102 QGPVSALAFHPN-----GHLMATSGKECKIKIWDLRK---YEV--LQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       102 ~~~v~~i~~~~~-----~~~l~~~~~d~~i~iwd~~~---~~~--~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~  171 (359)
                      ..++.+|+++|+     .+.+++||.-| +.++.-+-   ...  .....|+|.++.|.-+ +++-..|--|+|||+.+.
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~Gv~vyd~~~~  189 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDGVKVYDTPTR  189 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCCcEEEecccc
Confidence            567999999996     56789998888 77775432   112  3334789999999855 777777888999997665


Q ss_pred             CCccceeeccc-CCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          172 SHNYSRYMGHS-MVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       172 ~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ......-..+. ..+......+.|.++. .|+.|-.|.
T Consensus       190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~  226 (846)
T KOG2066|consen  190 QRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDS  226 (846)
T ss_pred             ceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCe
Confidence            32222111111 1122234557777654 445554443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=6e-06  Score=71.92  Aligned_cols=158  Identities=11%  Similarity=0.105  Sum_probs=102.7

Q ss_pred             EEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC-CCEEEE
Q 041916           42 LRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN-GHLMAT  119 (359)
Q Consensus        42 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~  119 (359)
                      +++.+..+.+...-+..+...|..++|||.+. ++..++.+..|.|.|+.+...+..+..| ..+++++|+-| .++|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            45555555555555667778899999999886 7889999999999999999888888887 78999999875 456888


Q ss_pred             EeCCCeEEEEEcCCce-eeEec-----cCCceeEEE------cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCC
Q 041916          120 SGKECKIKIWDLRKYE-VLQTL-----PGHAKTLDF------SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKG  186 (359)
Q Consensus       120 ~~~d~~i~iwd~~~~~-~~~~~-----~~~i~~~~~------s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  186 (359)
                      |-..|.|.+||+|..+ ++..+     ..+|..++.      .+.| +++++. -.+.+|..............-.  +.
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlele--~p  330 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLELE--PP  330 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCcccccC--CC
Confidence            8899999999999743 23232     223333332      2333 555543 2456676543322221111110  22


Q ss_pred             cceEEEEEeeCCCEEEE
Q 041916          187 YQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       187 ~~v~~~~~~p~~~~l~~  203 (359)
                      +.+.++++++..+.++.
T Consensus       331 G~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLL  347 (463)
T ss_pred             cceeeeeecCccceEEE
Confidence            25667777775554433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=1.6e-05  Score=73.37  Aligned_cols=187  Identities=13%  Similarity=0.026  Sum_probs=105.2

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      +..++++|+|+++++++ ||...|+..........     +.....+|.+.+ .+|+-..+++|.++.--.......+..
T Consensus        35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~  107 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL  107 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----
T ss_pred             CeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC
Confidence            49999999999998865 77888888554443221     345678899855 466666688899963222223223322


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC-ceeEEEcCCc-eEEEEcCCcEEEEcCCCC-------
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH-AKTLDFSQKG-LLAVGTGSFVQILGDFSG-------  171 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-i~~~~~s~~g-l~~~~~d~~i~i~d~~~~-------  171 (359)
                       +..+..|-.   |.+|+..+.+ .|.+||+.+++.+..+.-. |..+.||++| +++...+..+.|++....       
T Consensus       108 -~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~  182 (443)
T PF04053_consen  108 -PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPE  182 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTT
T ss_pred             -CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccc
Confidence             123444433   7777777654 8999999999999999654 7999999999 777777888888763211       


Q ss_pred             --C-CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          172 --S-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       172 --~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                        - .....+....    ..|.+.+|..+  .++..+.. .+.. ..++.-+.+...+.
T Consensus       183 ~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~-~lkY-l~~Ge~~~i~~ld~  233 (443)
T PF04053_consen  183 EGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSN-HLKY-LVNGETGIIAHLDK  233 (443)
T ss_dssp             TB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE-EETTEEEEEEE-SS
T ss_pred             cCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCC-eEEE-EEcCCcceEEEcCC
Confidence              0 0222222212    27999999976  55555555 6666 44555566665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.41  E-value=7.7e-05  Score=70.22  Aligned_cols=161  Identities=11%  Similarity=0.005  Sum_probs=99.1

Q ss_pred             EEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            3 YIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .+.| .+.+...++.-...+..++++|+|.++++.+.+    .++...+..+...+..+...  .+  -++.++|++...
T Consensus       218 SvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V  293 (635)
T PRK02888        218 TAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI  293 (635)
T ss_pred             EEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE
Confidence            3445 444455555555555677888999888777532    22333332222111111110  00  123446766555


Q ss_pred             EeCCCeEEEEeCCC----C-cceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCcee------------eEe
Q 041916           78 GHSGGTVTMWKPTT----A-APLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEV------------LQT  139 (359)
Q Consensus        78 g~~dg~v~lwd~~~----~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~  139 (359)
                        .++.|.+.|..+    + ..+..+.. ......+.++|||+++++++ .+.+|.++|+.+.+.            +.+
T Consensus       294 --~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae  370 (635)
T PRK02888        294 --GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE  370 (635)
T ss_pred             --CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence              357899999988    3 34444443 34468899999999987766 488999999987542            222


Q ss_pred             c--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916          140 L--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       140 ~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                      .  .-.....+|+++|  +.+.-.|+.|..||+..
T Consensus       371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            2  1234678899998  66667899999999765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.40  E-value=1.1e-05  Score=74.03  Aligned_cols=149  Identities=15%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEe-cCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASIN-KFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +++++ .+|.....+. ..+. ...+|+|||+.|+.+. .||  .|.++|+.++. +..+....+.-..-.|+|||+.|+
T Consensus       220 i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~iv  297 (425)
T COG0823         220 IYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIV  297 (425)
T ss_pred             EEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEE
Confidence            56777 5555433333 2223 6678999998776554 444  56677777666 334554444445778999998877


Q ss_pred             EEeC-CCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEEcCCceeeEec--cCCceeEE
Q 041916           77 LGHS-GGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-CK--IKIWDLRKYEVLQTL--PGHAKTLD  148 (359)
Q Consensus        77 sg~~-dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~--~~~i~~~~  148 (359)
                      ..+. .|.  |.++++..... ..+....+.-....|+|||.+|+..+.. |.  |.+.|+.++.-.+.+  .......+
T Consensus       298 f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps  376 (425)
T COG0823         298 FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPS  376 (425)
T ss_pred             EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCC
Confidence            6653 443  66667765544 3333233333378899999999888753 43  777777665545555  23445677


Q ss_pred             EcCCc
Q 041916          149 FSQKG  153 (359)
Q Consensus       149 ~s~~g  153 (359)
                      |.|+|
T Consensus       377 ~~~ng  381 (425)
T COG0823         377 WAPNG  381 (425)
T ss_pred             cCCCC
Confidence            88888

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.39  E-value=1.5e-07  Score=86.34  Aligned_cols=194  Identities=10%  Similarity=0.084  Sum_probs=128.1

Q ss_pred             CeEEEEEecC--CCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEeCC
Q 041916           20 AVLKLQFLRN--HFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNP-FNGVVSLGH----SGGTVTMWKPT   90 (359)
Q Consensus        20 ~~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~sg~----~dg~v~lwd~~   90 (359)
                      .+.|+++.-+  ..+++.|..+|.|.+-.+....-  -.....+..++++++|++ |.+.||+|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            3466666543  35789999999999998865332  233456778999999998 456777764    46779999998


Q ss_pred             CC--cceEE--Eec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec-cCCceeEEEcC-Cc-eEEEEcCC
Q 041916           91 TA--APLIK--MLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL-PGHAKTLDFSQ-KG-LLAVGTGS  161 (359)
Q Consensus        91 ~~--~~~~~--~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~i~~~~~s~-~g-l~~~~~d~  161 (359)
                      ++  .|...  |.+ ......+++|..+.+++.+|.....+.++|+|.. ..+..+ ...+..+.++| .+ +++...||
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg  217 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG  217 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence            76  33222  222 3345568999988888999998889999999943 223333 34677888888 44 88888899


Q ss_pred             cEEEEcC-CCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCC-CeEEEE
Q 041916          162 FVQILGD-FSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSM-GWSSIL  213 (359)
Q Consensus       162 ~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d-g~~~i~  213 (359)
                      .|.+||. ..-..++..+..........+..++|+|... .+++.+.| +++..+
T Consensus       218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            9999993 3333344433332221122589999999754 33343333 444443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.38  E-value=8.1e-05  Score=68.59  Aligned_cols=200  Identities=15%  Similarity=0.070  Sum_probs=118.5

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEE--EEec--CCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-------CeEEEEEc
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKL--QFLR--NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-------RTDVMRVN   69 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l--~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s   69 (359)
                      |+-+| .+|+.+..+........+  .-+|  .+..++.++.+|.+..+|..+|+.+........       ....+..+
T Consensus       172 l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s  251 (394)
T PRK11138        172 LQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT  251 (394)
T ss_pred             EEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence            56677 778877666543211100  0122  123566677899999999999987766542110       01111122


Q ss_pred             C--CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---C-C
Q 041916           70 P--FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---G-H  143 (359)
Q Consensus        70 p--~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~-~  143 (359)
                      |  .+..++.++.+|.+..+|+.+++.+.....  +....+..  .+..++.++.+|.+..+|..+++.+...+   . .
T Consensus       252 P~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~  327 (394)
T PRK11138        252 PVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL  327 (394)
T ss_pred             cEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc
Confidence            2  245677778899999999999987665431  11122222  46678888899999999999998765442   1 1


Q ss_pred             ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceE-EEEEeeCCCEEEEEcCCCeEEEE
Q 041916          144 AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIG-KVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       144 i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ..+..+. ++ +++++.+|.|.++|..++ +.+.......    ..+. +..+  .+..|++++.+|.+..+
T Consensus       328 ~~sp~v~-~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~----~~~~s~P~~--~~~~l~v~t~~G~l~~~  391 (394)
T PRK11138        328 LTAPVLY-NGYLVVGDSEGYLHWINREDG-RFVAQQKVDS----SGFLSEPVV--ADDKLLIQARDGTVYAI  391 (394)
T ss_pred             ccCCEEE-CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCC----CcceeCCEE--ECCEEEEEeCCceEEEE
Confidence            2333332 44 888888999999998776 4433332211    1222 1222  24567777888755443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=6.3e-06  Score=72.80  Aligned_cols=201  Identities=14%  Similarity=0.077  Sum_probs=134.7

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCeEEEEECCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc
Q 041916           18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM--G-EIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GGTVTMWKPTTAA   93 (359)
Q Consensus        18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~   93 (359)
                      |.++-.-.|..-..++.+++.||+++.|--..  | +.+..+..|.+.+.+++.+-++.++.+++. |..++++|+.+-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            55552223334467899999999999998654  2 345567789999999999999999999887 9999999987654


Q ss_pred             ceEE--EeccCCCeEEEEEcCC-CC-EEEE-EeCCCeEEEEEcCCcee-eEec----cCCceeEEEcCCc--eEEEEcCC
Q 041916           94 PLIK--MLCHQGPVSALAFHPN-GH-LMAT-SGKECKIKIWDLRKYEV-LQTL----PGHAKTLDFSQKG--LLAVGTGS  161 (359)
Q Consensus        94 ~~~~--~~~h~~~v~~i~~~~~-~~-~l~~-~~~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~s~~g--l~~~~~d~  161 (359)
                      .+..  +.--++.+..+. +|. -. .+++ .-.++.|.++|-+...+ ...+    ..+|.++.++|.+  +++....|
T Consensus        88 minmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             hhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            4322  222333333222 221 11 2333 33578999999886542 2222    5689999999988  66666779


Q ss_pred             cEEEEcCCCCCCccce-----------eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916          162 FVQILGDFSGSHNYSR-----------YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP  220 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~  220 (359)
                      .|.-|......+....           +.+... ......++.|+|+|..+.+-..|..+++++.-+++-
T Consensus       167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            9999985421010000           111111 233678999999999999999999888888766654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=7.6e-07  Score=84.62  Aligned_cols=149  Identities=13%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEE
Q 041916           52 IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIW  129 (359)
Q Consensus        52 ~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iw  129 (359)
                      ...+|..|....+|++|+.+.+.|+.|+..|.|++|++.+|.......+|.++|+-+.=+.||..+++.+.-.  ...+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            4556778888999999999999999999999999999999999999999999999998888999887766433  47799


Q ss_pred             EcCC-ceeeEeccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          130 DLRK-YEVLQTLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       130 d~~~-~~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      ++.. +.+.++|.. -.++.|+...  -+.++......+||+.++ .++.+|..........=+.+.|+|+..+++
T Consensus      1173 ~~~s~~~~~Hsf~e-d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE-DKAVKFSNSLQFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccccccCccccccc-cceeehhhhHHHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            9875 556666643 3567777665  344444568899998887 444444332221222346677888776554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00046  Score=63.11  Aligned_cols=180  Identities=13%  Similarity=0.169  Sum_probs=126.4

Q ss_pred             EEEEEecCCCE-EEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEE
Q 041916           22 LKLQFLRNHFL-LASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        22 ~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~~~~~~~   97 (359)
                      ..+++++.+.. .++...+..|.+.|..+........-.. ....++++|++..+..+..   ++++.+.|..+......
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            67888888774 4455556899999988777776665443 5678999999977766655   68999999988888777


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeE-e----c--cCCceeEEEcCCc--eEE-EEcC--CcEE
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQ-T----L--PGHAKTLDFSQKG--LLA-VGTG--SFVQ  164 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~--~~~i~~~~~s~~g--l~~-~~~d--~~i~  164 (359)
                      ...-..+ ..++++|+|..++.+. .++.|.+.|..+..... .    .  ......+.++|+|  +++ ...+  +.+.
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence            5544445 8899999999776665 78899999987766553 1    1  2345788999999  333 3333  5888


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      ..|..++......+...   .. ....+.++|+|.++.+....
T Consensus       235 ~id~~~~~v~~~~~~~~---~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         235 KIDTATGNVTATDLPVG---SG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             EEeCCCceEEEeccccc---cC-CCCceeECCCCCEEEEEecC
Confidence            88866652111112211   11 35668899999988887655

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=6.9e-06  Score=76.49  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE-
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-   98 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-   98 (359)
                      +.--+++..+.+++.|+..|.|++|+-..+..... ..+..+.+..+..|++..++|.|+..|.|.++-++...+.... 
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            43345566789999999999999999776653322 2224456677788999999999999999999988765432211 


Q ss_pred             -----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           99 -----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        99 -----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                           ..|...|++++|++++..+++|...|+|.+--+.+
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                 14778999999999999999999999999887766

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5.4e-06  Score=73.19  Aligned_cols=193  Identities=12%  Similarity=0.136  Sum_probs=132.1

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEE-cCCC---CEEEE-EeCCCeE
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRV-NPFN---GVVSL-GHSGGTV   84 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-sp~~---~~l~s-g~~dg~v   84 (359)
                      +..+..|..+ .+++.+-+|.+++|++. |..++++|+.+-..+.-++...-| ..+.| ...|   ..|++ .-.+|.+
T Consensus        46 VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i  124 (558)
T KOG0882|consen   46 VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKI  124 (558)
T ss_pred             hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCc
Confidence            4566778887 88999999999999887 999999999876554433322111 11222 2223   23433 3467899


Q ss_pred             EEEeCCCCc-c-eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-c-----eeeE---------ec---cCCc
Q 041916           85 TMWKPTTAA-P-LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-Y-----EVLQ---------TL---PGHA  144 (359)
Q Consensus        85 ~lwd~~~~~-~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~-----~~~~---------~~---~~~i  144 (359)
                      .++|-.... + ...-.-|..+|..+.++|.+..+++....|.|..|.... .     ....         .+   .+..
T Consensus       125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             EEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence            999976543 2 233346899999999999999999999899999998862 1     1111         11   3457


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee--------------------------------ecccCCCCcceE
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY--------------------------------MGHSMVKGYQIG  190 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------------~~~~~~~~~~v~  190 (359)
                      .++.|+|+|  +...+.|..|++++..++ ...+.+                                ..|   ....-+
T Consensus       205 ts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~---~~~~~~  280 (558)
T KOG0882|consen  205 TSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH---GSTVGT  280 (558)
T ss_pred             cceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh---cCcccc
Confidence            999999999  666778999999987665 222111                                111   122446


Q ss_pred             EEEEeeCCCEEEEEcCCCe
Q 041916          191 KVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       191 ~~~~~p~~~~l~~~~~dg~  209 (359)
                      .++|...|.+|+.|+.=|.
T Consensus       281 ~~~fdes~~flly~t~~gi  299 (558)
T KOG0882|consen  281 NAVFDESGNFLLYGTILGI  299 (558)
T ss_pred             eeEEcCCCCEEEeecceeE
Confidence            7889999999998887774

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00097  Score=61.02  Aligned_cols=193  Identities=12%  Similarity=0.089  Sum_probs=128.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |.+.| .+....+.+.-...+..++++|++..+..+..   ++++.+.|..++...........+ ..++++|+|..++.
T Consensus        98 v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv  176 (381)
T COG3391          98 VSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYV  176 (381)
T ss_pred             EEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEE
Confidence            44555 44445555554445689999999977776655   689999999999888876655445 89999999986555


Q ss_pred             E-eCCCeEEEEeCCCCcceE-----EEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEe-c--cC-Cc
Q 041916           78 G-HSGGTVTMWKPTTAAPLI-----KMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQT-L--PG-HA  144 (359)
Q Consensus        78 g-~~dg~v~lwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~-~--~~-~i  144 (359)
                      . ..++.|.+.|........     .+..... -..+.++|+|.++++....   +.+...|..++..... .  .. ..
T Consensus       177 ~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~  255 (381)
T COG3391         177 TNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAP  255 (381)
T ss_pred             EecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCC
Confidence            5 478899999976554332     1222222 2568999999987766544   5999999998876655 2  22 46


Q ss_pred             eeEEEcCCc--eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          145 KTLDFSQKG--LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       145 ~~~~~s~~g--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      ..+..+|+|  +.+. +..+.+.+.|..+. ........... ....+..+++.+..
T Consensus       256 ~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~  310 (381)
T COG3391         256 RGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGNE-ALGEPVSIAISPLY  310 (381)
T ss_pred             CceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeeccccc-ccccceeccceeec
Confidence            788999999  3333 44589999986654 23222222211 12235566666654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.00062  Score=57.79  Aligned_cols=188  Identities=12%  Similarity=0.095  Sum_probs=106.4

Q ss_pred             EeccCC-CeEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           14 CLKEHG-AVLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        14 ~l~~h~-~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      .+.+-. .+.+++|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            344433 36999999975 56677778899999997 48888877643 3567889998888777766678999999884


Q ss_pred             CCc---c---eEEEe-----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec-----------cCCce
Q 041916           91 TAA---P---LIKML-----CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL-----------PGHAK  145 (359)
Q Consensus        91 ~~~---~---~~~~~-----~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~-----------~~~i~  145 (359)
                      ...   .   ...+.     .+...+-.++|+|.++.|+++-...-..+|.+..   ...+...           -..++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321   1   12222     2344589999999888888877776666776653   1111111           13468


Q ss_pred             eEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCC-----CCcceEEEEEeeCCCEEEEE
Q 041916          146 TLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       146 ~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +++++|..  +++.+ .+..|..+| ..+ .++..+.-..+.     .-.....|+|.++|++.+++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            99999976  55555 456788888 444 333322211100     11257889999999655543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.21  E-value=0.00063  Score=61.66  Aligned_cols=193  Identities=11%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             eEEEe-CCCcEEEEeccC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-----------------CCC
Q 041916            2 PYIYN-RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-----------------LGR   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~   62 (359)
                      ++||| .+++. ..+... .......|||+|+.+|... ++.|.+++..++...+.-...                 -+.
T Consensus        25 y~i~d~~~~~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   25 YYIYDIETGEI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEEETTTTEE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             EEEEecCCCce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            57888 55444 444433 3348899999999998876 678999998877543322111                 122


Q ss_pred             eEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCCCcceE-EEe----cc
Q 041916           63 TDVMRVNPFNGVVSLGHSGG------------------------------------TVTMWKPTTAAPLI-KML----CH  101 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg------------------------------------~v~lwd~~~~~~~~-~~~----~h  101 (359)
                      -..+.||||+++|+....|-                                    .+.|+|+.+++... ...    .-
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~  182 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ  182 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred             ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence            35788999999888754321                                    24445665554321 111    22


Q ss_pred             CCCeEEEEEcCCCCEEEEE--eCCC---eEEEEEcCCceeeEec----cCCc---eeEEEc-CCc---eEEEEcCC--cE
Q 041916          102 QGPVSALAFHPNGHLMATS--GKEC---KIKIWDLRKYEVLQTL----PGHA---KTLDFS-QKG---LLAVGTGS--FV  163 (359)
Q Consensus       102 ~~~v~~i~~~~~~~~l~~~--~~d~---~i~iwd~~~~~~~~~~----~~~i---~~~~~s-~~g---l~~~~~d~--~i  163 (359)
                      ...+..+.|.+++..|+..  +.+.   .+.++|..++.+...+    .+.+   ..+.|. +++   +.....+|  +|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            3457889999998844433  3332   5777888776543222    3333   455555 666   44444666  55


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEE-EEEeeCCCEEE
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGK-VSFRPYEDVLG  202 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~  202 (359)
                      .+++...+  ....+....    ..|.. +.|+++++.|.
T Consensus       263 y~~~~~~~--~~~~lT~G~----~~V~~i~~~d~~~~~iy  296 (353)
T PF00930_consen  263 YLYDLDGG--KPRQLTSGD----WEVTSILGWDEDNNRIY  296 (353)
T ss_dssp             EEEETTSS--EEEESS-SS----S-EEEEEEEECTSSEEE
T ss_pred             EEEccccc--ceeccccCc----eeecccceEcCCCCEEE
Confidence            66664333  223333222    25644 67788776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.17  E-value=0.0012  Score=58.95  Aligned_cols=206  Identities=11%  Similarity=0.121  Sum_probs=118.6

Q ss_pred             CeEEEe-CCCcEEEEec--cCCCeEEEEEec---C----CCEEEEEec---------C-CeEEEEECCCC-----e--EE
Q 041916            1 YPYIYN-RDGTELHCLK--EHGAVLKLQFLR---N----HFLLASINK---------F-GQLRYQDVTMG-----E--IV   53 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~--~h~~~~~l~~s~---~----~~~l~s~~~---------d-g~i~iwd~~~~-----~--~~   53 (359)
                      +|+|+| .+.+.+..+.  ....+.+++...   +    ..+|++|..         . |.|.++++...     +  .+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            378899 6777766554  444445554432   2    467777754         2 89999999884     2  22


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                      ... ...++|++++-. .+ .|+++. ++.|.+|++...+.+.....  ....+.++...  ++++++|.....+.++..
T Consensus        83 ~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   83 HST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            222 246789888765 33 444443 47899999987772332222  23356666554  569999988888887754


Q ss_pred             CC-ceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC------CC-cccee-ecccCCCCcceEEE---
Q 041916          132 RK-YEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG------SH-NYSRY-MGHSMVKGYQIGKV---  192 (359)
Q Consensus       132 ~~-~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~------~~-~~~~~-~~~~~~~~~~v~~~---  192 (359)
                      .. ...+..+     +..++++.+-+++  ++++..+|.+.++.....      .. .+... .-|   .+..|+++   
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~  233 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRG  233 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE-
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEE
Confidence            43 2222222     3357888887555  777778899999875421      11 11211 122   33467777   


Q ss_pred             EEeeC--CC------EEEEEcCCCeEEEEEc
Q 041916          193 SFRPY--ED------VLGIGHSMGWSSILVP  215 (359)
Q Consensus       193 ~~~p~--~~------~l~~~~~dg~~~i~~~  215 (359)
                      ++.|.  +.      .++.++.+|.+..+.+
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence            54552  22      3777778887776665

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.00037  Score=66.75  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             cCCCEEEEEecCC-----eEEEEECCCC------eEEE--EEec-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           28 RNHFLLASINKFG-----QLRYQDVTMG------EIVG--NFRT-----GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        28 ~~~~~l~s~~~dg-----~i~iwd~~~~------~~~~--~~~~-----~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      .+.++|++.+.|+     .|+|||+..-      .++.  .+.+     ...++.+++.+.+-..+|+|-.||.|.++.-
T Consensus        75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G  154 (933)
T KOG2114|consen   75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG  154 (933)
T ss_pred             cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence            3446788776654     5899998632      3441  1222     3457889999999899999999999999852


Q ss_pred             C---C-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCCc-eEEEEcC
Q 041916           90 T---T-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQKG-LLAVGTG  160 (359)
Q Consensus        90 ~---~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~g-l~~~~~d  160 (359)
                      +   . +....-.....++|+.+++..++..++.+.....|.+|.+....+... +   ..+..|.++++.. -+.++.+
T Consensus       155 Di~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  155 DILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             cchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence            2   1 111111223467999999998888733333345799999985443333 3   3367888888876 4666778


Q ss_pred             CcEEEEcCCC
Q 041916          161 SFVQILGDFS  170 (359)
Q Consensus       161 ~~i~i~d~~~  170 (359)
                      ..|.+|+...
T Consensus       235 e~l~fY~sd~  244 (933)
T KOG2114|consen  235 EFLYFYDSDG  244 (933)
T ss_pred             ceEEEEcCCC
Confidence            8999999543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.14  E-value=0.0011  Score=56.36  Aligned_cols=164  Identities=17%  Similarity=0.215  Sum_probs=97.6

Q ss_pred             eEEEeCCCcEEEEec--cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe------EEEEEe-----cCCCCeEEEEE
Q 041916            2 PYIYNRDGTELHCLK--EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE------IVGNFR-----TGLGRTDVMRV   68 (359)
Q Consensus         2 v~iwd~~g~~~~~l~--~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~   68 (359)
                      |+.++.+|+.+..+.  +..+.-.+++..++.++++.-.++.+.++++....      .+..+.     .++..+-.++|
T Consensus        46 i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~  125 (248)
T PF06977_consen   46 IYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAY  125 (248)
T ss_dssp             EEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEE
Confidence            455667787776654  44566899999888888777678999999984321      112222     24456889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCC---CcceEEE--e------ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCcee
Q 041916           69 NPFNGVVSLGHSGGTVTMWKPTT---AAPLIKM--L------CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEV  136 (359)
Q Consensus        69 sp~~~~l~sg~~dg~v~lwd~~~---~~~~~~~--~------~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  136 (359)
                      +|.++.|+.+-......+|.++.   ...+...  .      .....+.+++++|. |++++.+..+..|..+| ..|++
T Consensus       126 D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~  204 (248)
T PF06977_consen  126 DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV  204 (248)
T ss_dssp             ETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred             cCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence            99887777777766666776543   2111111  1      12345789999995 55667777788999999 66777


Q ss_pred             eEec--cC----------CceeEEEcCCc-eEEEEcCCcEEEE
Q 041916          137 LQTL--PG----------HAKTLDFSQKG-LLAVGTGSFVQIL  166 (359)
Q Consensus       137 ~~~~--~~----------~i~~~~~s~~g-l~~~~~d~~i~i~  166 (359)
                      +..+  ..          ..-.|+|.++| ++.++.-+..++|
T Consensus       205 ~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  205 VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            6655  21          35789999999 8888877766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.12  E-value=0.0013  Score=58.60  Aligned_cols=195  Identities=14%  Similarity=0.061  Sum_probs=104.4

Q ss_pred             CCCcEEEEeccCCCe-EEE-----EEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            7 RDGTELHCLKEHGAV-LKL-----QFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         7 ~~g~~~~~l~~h~~~-~~l-----~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .+|..+..|...... ..+     +|.+||+.|+.++.   ...+.+.|+.+++..+.-.+.........++|+.+.++-
T Consensus        18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred             CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence            789999988876664 444     56778876665554   456788888888765544433233335667788888776


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEEcCC
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH--PNGHLMATSGK----------------------ECKIKIWDLRK  133 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~  133 (359)
                      ...+..|.-.|+.+.+....+....+.+-...|.  .|+..++-.-.                      ...|...|+.+
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t  177 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT  177 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence            6666788999999987666666666666556664  46666544311                      13466678888


Q ss_pred             ceeeEec--cCCceeEEEcCCc--eEEEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          134 YEVLQTL--PGHAKTLDFSQKG--LLAVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       134 ~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      |+....+  ...+..+.|||..  +++-|..|     .-+||-+.+.+.....+..+.  .+..+..=-|.|+|..|..
T Consensus       178 G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~--~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  178 GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM--EGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred             CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC--CCcccccccccCCCCEEEE
Confidence            7765555  5567899999987  66665432     236676555544444444442  3445666678999987654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.11  E-value=0.0013  Score=62.41  Aligned_cols=217  Identities=12%  Similarity=0.110  Sum_probs=120.4

Q ss_pred             eEEEe-CCCcEEEEeccCCC--e-EEEEEec--CCCEEEEEe---------cCCeEEEEECCCCeEEEEEecCCCC----
Q 041916            2 PYIYN-RDGTELHCLKEHGA--V-LKLQFLR--NHFLLASIN---------KFGQLRYQDVTMGEIVGNFRTGLGR----   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~--~-~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~----   62 (359)
                      |+-+| .+|+++-.+.....  . ..+.-+|  .+.+++.++         .+|.|..+|..+|+.+..+......    
T Consensus       122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~  201 (488)
T cd00216         122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF  201 (488)
T ss_pred             EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence            45567 67887766654433  1 1111122  123444443         3688999999999998887642110    


Q ss_pred             ----------------e-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCcceEEEeccCCCeE-
Q 041916           63 ----------------T-DVMRVNPFNGVVSLGHSGG------------------TVTMWKPTTAAPLIKMLCHQGPVS-  106 (359)
Q Consensus        63 ----------------v-~~~~~sp~~~~l~sg~~dg------------------~v~lwd~~~~~~~~~~~~h~~~v~-  106 (359)
                                      + ...+..+.+..++.++.++                  .|.-+|+.+++.+..++.-..... 
T Consensus       202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~  281 (488)
T cd00216         202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWD  281 (488)
T ss_pred             CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcc
Confidence                            0 1234444566777777665                  799999999998877652111110 


Q ss_pred             -----EEEEc----CCCC---EEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCceEEEE----------------
Q 041916          107 -----ALAFH----PNGH---LMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVG----------------  158 (359)
Q Consensus       107 -----~i~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~gl~~~~----------------  158 (359)
                           ...+.    -+|.   .++.++.+|.+...|..+|+.+.........++.+|+-+++.+                
T Consensus       282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~  361 (488)
T cd00216         282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCK  361 (488)
T ss_pred             cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCC
Confidence                 11111    1333   5778888999999999999988776322233445553233321                


Q ss_pred             --cCCcEEEEcCCCCCCccceeec-ccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          159 --TGSFVQILGDFSGSHNYSRYMG-HSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       159 --~d~~i~i~d~~~~~~~~~~~~~-~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                        .+|.|.-+|+.++......-.. +..  ..+.+...-.....+..|++++.+|.+..+...++
T Consensus       362 ~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG  426 (488)
T cd00216         362 KPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG  426 (488)
T ss_pred             CCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence              2467888887776332222111 000  00001111111234677888888887666665444

The alignment model contains an 8-bladed beta-propeller.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.11  E-value=6.2e-07  Score=82.36  Aligned_cols=152  Identities=14%  Similarity=0.153  Sum_probs=105.0

Q ss_pred             cCCCe-EEEEEec-CCCEEEEEe----cCCeEEEEECCCC--eEE--EEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916           17 EHGAV-LKLQFLR-NHFLLASIN----KFGQLRYQDVTMG--EIV--GNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVT   85 (359)
Q Consensus        17 ~h~~~-~~l~~s~-~~~~l~s~~----~dg~i~iwd~~~~--~~~--~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~   85 (359)
                      +|... ++++|++ |.+.||.|-    .|..+.|||+.++  .+.  ..|.+ ......+++|-.+..++.+|.....+.
T Consensus       100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH  179 (783)
T ss_pred             cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence            34455 8999988 567777763    3678999999876  222  22222 334567899998889999999999999


Q ss_pred             EEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE-cCCc-eeeEec-------cCCceeEEEcCCc--
Q 041916           86 MWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWD-LRKY-EVLQTL-------PGHAKTLDFSQKG--  153 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd-~~~~-~~~~~~-------~~~i~~~~~s~~g--  153 (359)
                      ++|++.... .........+..+.++| .++|+++-. ||.|.+|| .++- .++..+       +..+..++|.|..  
T Consensus       180 ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg  257 (783)
T KOG1008|consen  180 IFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG  257 (783)
T ss_pred             hhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence            999984321 11112233566788899 788887766 89999999 5543 233333       2347899999965  


Q ss_pred             -eEEEEcC-CcEEEEcCCC
Q 041916          154 -LLAVGTG-SFVQILGDFS  170 (359)
Q Consensus       154 -l~~~~~d-~~i~i~d~~~  170 (359)
                       ++++..| ++|+.||+..
T Consensus       258 lla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  258 LLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hhhhhccCcceEEEecccc
Confidence             5555554 7999999753

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.7e-05  Score=73.01  Aligned_cols=92  Identities=12%  Similarity=0.175  Sum_probs=79.4

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      .+..+.|+|.-.++|++..+|.|-+..+. .+.+.++..|..+++ +++|.|||+.||.|-.||+|.+-|+.++..+..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            34789999999999999999999999988 788889988888888 9999999999999999999999999998877663


Q ss_pred             e-ccCCCeEEEEEcC
Q 041916           99 L-CHQGPVSALAFHP  112 (359)
Q Consensus        99 ~-~h~~~v~~i~~~~  112 (359)
                      . .-...|.++.|+|
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence            2 3345688888864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=0.0013  Score=54.67  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=98.4

Q ss_pred             EEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC
Q 041916           24 LQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ  102 (359)
Q Consensus        24 l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~  102 (359)
                      +...+| ..+++.|+..+.+.--|..+|+....-... ..+-+-+.- -|.+++.|+..|.+++.+.++|.....+..-.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            334444 356778888999999999999877653321 222222221 36789999999999999999998887776433


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc-eeEEEcC-Cc-eEEEEcCCcEEEE
Q 041916          103 GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA-KTLDFSQ-KG-LLAVGTGSFVQIL  166 (359)
Q Consensus       103 ~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i-~~~~~s~-~g-l~~~~~d~~i~i~  166 (359)
                      .-=......+++..++.++.|+..+..|.++..++...  .+.+ .+.++.| ++ ++++...|.+.--
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav  162 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV  162 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence            22233456789999999999999999999999988876  3333 4455555 44 6666666554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.07  E-value=0.00067  Score=57.11  Aligned_cols=171  Identities=16%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe---EEEEEecCCCEEEEEecC-----CeEEEEECCCC-eEEEEEecCCCCeEEEEEcCC
Q 041916            2 PYIYN-RDGTELHCLKEHGAV---LKLQFLRNHFLLASINKF-----GQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~---~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~   71 (359)
                      -+++| .++.+..++....+-   -.-.|||||.+|+..-+|     |.|-|||.+.+ +.+..+.+|.-..+.+.|.+|
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence            35778 566665555443332   345899999999876543     89999999854 456778888888899999999


Q ss_pred             CCEEEEEeCC------------------CeEEEEeCCCCcceEEE--e--ccCCCeEEEEEcCCCCEEEEEeCCCe----
Q 041916           72 NGVVSLGHSG------------------GTVTMWKPTTAAPLIKM--L--CHQGPVSALAFHPNGHLMATSGKECK----  125 (359)
Q Consensus        72 ~~~l~sg~~d------------------g~v~lwd~~~~~~~~~~--~--~h~~~v~~i~~~~~~~~l~~~~~d~~----  125 (359)
                      |+.++.+...                  -++.+.|..++..+.+.  .  -+.-.|+.++..+||..++.|-..|.    
T Consensus       173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~  252 (366)
T COG3490         173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL  252 (366)
T ss_pred             CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence            9998876421                  12334444444433321  1  23446788888888877766644331    


Q ss_pred             -EEEEEcCCceeeEec----------cCCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCC
Q 041916          126 -IKIWDLRKYEVLQTL----------PGHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGS  172 (359)
Q Consensus       126 -i~iwd~~~~~~~~~~----------~~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~  172 (359)
                       -.+=-.+.++++.-+          ...|-+++.+.+. +++.+  .++...+||..++.
T Consensus       253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence             111112233443333          2356788887654 44443  46788899988773

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.07  E-value=0.0025  Score=56.02  Aligned_cols=163  Identities=17%  Similarity=0.139  Sum_probs=97.3

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCc
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNPFNGVVSLGHS-----------GGTVTMWKPTTAA   93 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~sg~~-----------dg~v~lwd~~~~~   93 (359)
                      +..|+++.  .-+.+++..++.....+..     .....+.+...|+|.+.+....           -|.|+.+|+ .+.
T Consensus        77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~  153 (307)
T COG3386          77 GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG  153 (307)
T ss_pred             CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC
Confidence            33444443  3467777766655333321     1235678888999987775443           144555554 454


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c----ee-eEec---cCCceeEEEcCCc-eEEEE-cC
Q 041916           94 PLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRK--Y----EV-LQTL---PGHAKTLDFSQKG-LLAVG-TG  160 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~--~----~~-~~~~---~~~i~~~~~s~~g-l~~~~-~d  160 (359)
                      .+..+..+-..-+.|+||||++.|+.+-. .+.|.-|++..  +    .. ...+   ++..-.++...+| +.+++ .+
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            45544454455678999999988777654 47888887752  1    11 1111   3566788888888 55333 33


Q ss_pred             -CcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEE
Q 041916          161 -SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVL  201 (359)
Q Consensus       161 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l  201 (359)
                       +.|.+|+.. + ..+..+.-...    .+++++|-- +.+.|
T Consensus       234 g~~v~~~~pd-G-~l~~~i~lP~~----~~t~~~FgG~~~~~L  270 (307)
T COG3386         234 GGRVVRFNPD-G-KLLGEIKLPVK----RPTNPAFGGPDLNTL  270 (307)
T ss_pred             CceEEEECCC-C-cEEEEEECCCC----CCccceEeCCCcCEE
Confidence             399999965 4 45555544422    678888864 34443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.07  E-value=0.00027  Score=64.10  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             ecCCCEEEEEe---------cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           27 LRNHFLLASIN---------KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        27 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      |||+++++...         ..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.++++.++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67887776632         246899999999765443332 56788999999999988875 57899999876643221


Q ss_pred             -Eec-------c---------CCCeEEEEEcCCCCEEEEEe
Q 041916           98 -MLC-------H---------QGPVSALAFHPNGHLMATSG  121 (359)
Q Consensus        98 -~~~-------h---------~~~v~~i~~~~~~~~l~~~~  121 (359)
                       ..+       -         -+.-.++.|||||++||...
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence             112       0         11235788999999998874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.06  E-value=0.0049  Score=52.20  Aligned_cols=183  Identities=15%  Similarity=0.214  Sum_probs=112.3

Q ss_pred             EEEeccCCCe--EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916           12 LHCLKEHGAV--LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        12 ~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      +.++.+....  ..+.|..++.++-+.+.-|  .|+.+|+.+|+.+....-... ---.++... +.++...-.++...+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEE
Confidence            4455544444  7899988888888887765  899999999998766553321 122344332 345555678899999


Q ss_pred             EeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----c----CCceeEEEcCCc-eEEE
Q 041916           87 WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----P----GHAKTLDFSQKG-LLAV  157 (359)
Q Consensus        87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~----~~i~~~~~s~~g-l~~~  157 (359)
                      ||..+.+.+.++.- .+.=+.++  .|+..|+.+.....|.++|..+.+....+    .    ..++.+.|. +| +++-
T Consensus       115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred             EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence            99999888887753 44556777  46777777777789999999988776665    1    134667776 45 5554


Q ss_pred             E-cCCcEEEEcCCCCCCccceee-----c------ccCCCCcceEEEEEeeCCCE
Q 041916          158 G-TGSFVQILGDFSGSHNYSRYM-----G------HSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       158 ~-~d~~i~i~d~~~~~~~~~~~~-----~------~~~~~~~~v~~~~~~p~~~~  200 (359)
                      - ....|...|+.++ .....+.     .      .......-.+.|+|.|..+.
T Consensus       191 VW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  191 VWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             ETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             eCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            4 3466777776666 3322221     0      00001336899999998773

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.05  E-value=0.00018  Score=70.24  Aligned_cols=129  Identities=16%  Similarity=0.242  Sum_probs=92.5

Q ss_pred             ecCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCC-------CCEEEEEeCCCeEEEEeCCCCc-ceEEEe----ccCC
Q 041916           37 NKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPF-------NGVVSLGHSGGTVTMWKPTTAA-PLIKML----CHQG  103 (359)
Q Consensus        37 ~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~-------~~~l~sg~~dg~v~lwd~~~~~-~~~~~~----~h~~  103 (359)
                      .....|+-.|+..|+.+..+..|... |..+  .|+       +...+.|-.+..+..||++-.. .+..-.    ....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            45678999999999999999987654 5444  343       2345567788889999998643 222111    2344


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe---ccCCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT---LPGHAKTLDFSQKG-LLAVGTGSFVQILGD  168 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~  168 (359)
                      ..+|++-+.+| +||+|+.+|.|++||--..+....   +..+|..|+.+.|| ++.+..+..|.+++.
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            67788877776 799999999999999432222222   24689999999999 777777888888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.05  E-value=0.0027  Score=58.65  Aligned_cols=190  Identities=12%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec----CCCCe-----EEEEEcCC
Q 041916            2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT----GLGRT-----DVMRVNPF   71 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v-----~~~~~sp~   71 (359)
                      |.||+..|..+..+.-..+ +.++.|+.+..++ ....||.+++||+. |+.  .+.-    ....|     ....+..+
T Consensus        63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCC
Confidence            8899999999887664334 4999998866555 55679999999986 444  2211    11122     22222224


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCc-ceEEEe----------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAA-PLIKML----------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~-~~~~~~----------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      |-.++  ..++.+.+.+-.... ....+.          .+........++.+....+....++.+.+.+-.....+. .
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~-~  215 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQID-S  215 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccccc-C
Confidence            42222  334445444321111 111110          011100012344455555555555666655543322211 1


Q ss_pred             cCCceeEEEcCCc-eEE-EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          141 PGHAKTLDFSQKG-LLA-VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       141 ~~~i~~~~~s~~g-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      .+++..|++||+| +++ ...+|.+.+.+.... .....+...   .......+.|+-+...++
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~---~~~~p~~~~WCG~dav~l  275 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTD---SKSPPKQMAWCGNDAVVL  275 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecC---cCCCCcEEEEECCCcEEE
Confidence            4689999999999 444 456689888874333 222222222   223677889997654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=3.6e-05  Score=71.04  Aligned_cols=91  Identities=16%  Similarity=0.209  Sum_probs=79.0

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVS-ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      ..+--+.|+|.-.+||.+..+|.|.+..++ .+.+.++..|.-.++ +++|.|||+.||+|=.||+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            346778999999999999999999999988 778888886777777 999999999999999999999999999888777


Q ss_pred             c----cCCceeEEEcCC
Q 041916          140 L----PGHAKTLDFSQK  152 (359)
Q Consensus       140 ~----~~~i~~~~~s~~  152 (359)
                      +    ...|.++-|++.
T Consensus       100 ~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDRI  116 (665)
T ss_pred             cccccccchheeecccc
Confidence            4    457888888754

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.01  E-value=0.00096  Score=64.14  Aligned_cols=179  Identities=13%  Similarity=0.037  Sum_probs=102.7

Q ss_pred             eEEEEEecCCCEEEEEe------cC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------
Q 041916           21 VLKLQFLRNHFLLASIN------KF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG-----------   81 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~------~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d-----------   81 (359)
                      +...+++|+|..++...      .|  ..|.+++.. +.. ..+... ...+.-.|+|+|..|++.+..           
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            37888999998876654      23  356666652 333 333222 237889999998876665432           


Q ss_pred             -CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEE---EEcCCcee-e---Eec----cCCceeEEE
Q 041916           82 -GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKI---WDLRKYEV-L---QTL----PGHAKTLDF  149 (359)
Q Consensus        82 -g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~----~~~i~~~~~  149 (359)
                       +.+.+.++..+....   ...+.|.++.|||||..++... ++.|.+   -....|.. +   ..+    ...+.++.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence             233333444433322   2356799999999999988776 477776   33333431 1   112    234688999


Q ss_pred             cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          150 SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       150 s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      .+++ |+++..++.-.+|.+.-++.....+....  ...++.+++-++.  -++++..+|..
T Consensus       505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~--~iyv~~~~g~~  562 (591)
T PRK13616        505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPS--TVYVTDARAVL  562 (591)
T ss_pred             ecCCEEEEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCc--eEEEEcCCceE
Confidence            9999 66665554444444322222222222211  1236777777763  45566777633

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=0.00064  Score=62.90  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916           58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL  137 (359)
Q Consensus        58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  137 (359)
                      ...-.+..+.++|+|+.+++ +.||.-.|+.........     .+.-..++|.+++ .+|+-...++|.++.--.....
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence            34455789999999999888 567778888743332222     2344678899855 4666666888999733233332


Q ss_pred             Eec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          138 QTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       138 ~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      ..+  +..+..|-.   | ++....++.|.+||..++ ..+..+...      +|..+.|++++.+++..+.+.+
T Consensus       103 k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~-~~i~~i~v~------~vk~V~Ws~~g~~val~t~~~i  167 (443)
T PF04053_consen  103 KSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETG-KLIRRIDVS------AVKYVIWSDDGELVALVTKDSI  167 (443)
T ss_dssp             -----SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred             eEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHc-ceeeEEecC------CCcEEEEECCCCEEEEEeCCeE
Confidence            334  222333333   7 777777779999998776 455555433      5899999999999999887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0035  Score=59.46  Aligned_cols=166  Identities=11%  Similarity=0.050  Sum_probs=103.7

Q ss_pred             eEEEe-CCCcEEEEeccCC---------------------Ce-EEEEEecCCCEEEEEecCC------------------
Q 041916            2 PYIYN-RDGTELHCLKEHG---------------------AV-LKLQFLRNHFLLASINKFG------------------   40 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~---------------------~~-~~l~~s~~~~~l~s~~~dg------------------   40 (359)
                      |+-+| .+|+.+-.+....                     .+ ...++.+.+.+++.++.++                  
T Consensus       177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~  256 (488)
T cd00216         177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD  256 (488)
T ss_pred             EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence            45667 7888776654321                     12 2445555566777776554                  


Q ss_pred             eEEEEECCCCeEEEEEecCCCCeE------EEEEc----CCCC---EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916           41 QLRYQDVTMGEIVGNFRTGLGRTD------VMRVN----PFNG---VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA  107 (359)
Q Consensus        41 ~i~iwd~~~~~~~~~~~~~~~~v~------~~~~s----p~~~---~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~  107 (359)
                      .|.-+|..+|+.+..++.-.....      .....    -++.   .++.++.+|.+...|..+|+.+......   ...
T Consensus       257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~  333 (488)
T cd00216         257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQP  333 (488)
T ss_pred             eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccc
Confidence            799999999999988753211111      01111    1232   6778889999999999999988765421   112


Q ss_pred             EEEcCCCCEEEEE------------------eCCCeEEEEEcCCceeeEeccCC-----------c--eeEEEcCCceEE
Q 041916          108 LAFHPNGHLMATS------------------GKECKIKIWDLRKYEVLQTLPGH-----------A--KTLDFSQKGLLA  156 (359)
Q Consensus       108 i~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~-----------i--~~~~~s~~gl~~  156 (359)
                      ++.+|  ..++.+                  ..+|.|...|+.+++.+-+....           .  ..+....+-+++
T Consensus       334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~  411 (488)
T cd00216         334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA  411 (488)
T ss_pred             cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence            33444  233332                  24678999999999887766321           1  122333322777


Q ss_pred             EEcCCcEEEEcCCCCC
Q 041916          157 VGTGSFVQILGDFSGS  172 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~  172 (359)
                      ++.+|.|+.+|..++.
T Consensus       412 g~~dG~l~ald~~tG~  427 (488)
T cd00216         412 GAADGYFRAFDATTGK  427 (488)
T ss_pred             ECCCCeEEEEECCCCc
Confidence            8889999999988874

The alignment model contains an 8-bladed beta-propeller.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.93  E-value=0.001  Score=63.90  Aligned_cols=164  Identities=13%  Similarity=0.083  Sum_probs=90.1

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916           39 FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH------SGG--TVTMWKPTTAAPLIKMLCHQGPVSALAF  110 (359)
Q Consensus        39 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~------~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~  110 (359)
                      +|.+.-.+-..-.++.-..+....+...+.+|+|..++..-      .|+  .|.+++.. +.. ..+..- ...+...|
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsW  404 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSW  404 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceE
Confidence            66665544222122222222334678899999998877654      244  45555542 222 333222 23788999


Q ss_pred             cCCCCEEEEEeCC------------CeEEEEEcCCceeeEeccCCceeEEEcCCc-eEEEEcCCcEEE---EcCCCCCCc
Q 041916          111 HPNGHLMATSGKE------------CKIKIWDLRKYEVLQTLPGHAKTLDFSQKG-LLAVGTGSFVQI---LGDFSGSHN  174 (359)
Q Consensus       111 ~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i---~d~~~~~~~  174 (359)
                      +|||..|++.+..            +.+.+.++..+.....+.+.|..+.||||| .++.-.++.|++   -....+...
T Consensus       405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~  484 (591)
T PRK13616        405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYA  484 (591)
T ss_pred             CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCcee
Confidence            9998887776532            344444555544433456789999999999 333333677777   332223111


Q ss_pred             ccee--ecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          175 YSRY--MGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       175 ~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +...  ....  .+..+.++.|.+++.++ ++..++
T Consensus       485 l~~~~~l~~~--l~~~~~~l~W~~~~~L~-V~~~~~  517 (591)
T PRK13616        485 LTNPREVGPG--LGDTAVSLDWRTGDSLV-VGRSDP  517 (591)
T ss_pred             ecccEEeecc--cCCccccceEecCCEEE-EEecCC
Confidence            1000  1111  12246889999999855 544443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.92  E-value=0.0015  Score=61.78  Aligned_cols=181  Identities=9%  Similarity=-0.024  Sum_probs=106.2

Q ss_pred             EecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcceEEEec
Q 041916           26 FLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG----TVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        26 ~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg----~v~lwd~~~~~~~~~~~~  100 (359)
                      ++|||..+.. .-..+.+.+.|..+.+...++.-.. ....++++|+|.++++.+.+.    ++...+..+...+..+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            3455654422 2235678888888887777776543 456789999999988876322    233333222211111110


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----ceeeEec--cCCceeEEEcCCc--eE-EEEcCCcEEEEcCCC
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-----YEVLQTL--PGHAKTLDFSQKG--LL-AVGTGSFVQILGDFS  170 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~--~~~i~~~~~s~~g--l~-~~~~d~~i~i~d~~~  170 (359)
                        ..+  .++.++|++...+  ++.|.+.|.++     ...+..+  ...+..+.+||||  ++ ++..++++.|+|+..
T Consensus       279 --~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        279 --ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             --HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence              000  1234578876653  57899999998     4455555  5578999999999  33 344579999999766


Q ss_pred             CCCcc-------ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          171 GSHNY-------SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       171 ~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .....       ..+.+... -+......+|.++|....+-..|..+-.|.
T Consensus       353 ~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhhhhccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence            42211       11111111 122345678888887666655555555554

>smart00320 WD40 WD40 repeats

Probab=97.88  E-value=6.6e-05  Score=42.83  Aligned_cols=39  Identities=18%  Similarity=0.468  Sum_probs=34.7

Q ss_pred             CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           50 GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        50 ~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      +++...+..|...|.++.|+|.+..+++++.|+.+.+|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456677788889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.87  E-value=0.00032  Score=69.61  Aligned_cols=113  Identities=12%  Similarity=0.236  Sum_probs=78.9

Q ss_pred             EEEEEecCCCEEEEE-----ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--
Q 041916           22 LKLQFLRNHFLLASI-----NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH---SGGTVTMWKPTT--   91 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~---~dg~v~lwd~~~--   91 (359)
                      +.++|.-||.++|+.     .....|+|||-. |..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-+.  
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            679999999999883     223799999976 543322222334456899999999988753   456788887442  


Q ss_pred             -CcceEEEeccCCCeEEEEEcCCCCEEEE---EeCCCeEEEEEcCCce
Q 041916           92 -AAPLIKMLCHQGPVSALAFHPNGHLMAT---SGKECKIKIWDLRKYE  135 (359)
Q Consensus        92 -~~~~~~~~~h~~~v~~i~~~~~~~~l~~---~~~d~~i~iwd~~~~~  135 (359)
                       +.....+......|..++|+.++..|++   +.....|.+|-+.++.
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence             2222233334445899999999999988   4455569999998854

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=5.7e-05  Score=43.09  Aligned_cols=38  Identities=37%  Similarity=0.798  Sum_probs=33.6

Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD  130 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd  130 (359)
                      .+...+..|...|.++.|++++.++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.83  E-value=0.0096  Score=52.28  Aligned_cols=172  Identities=12%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEEeccCC------
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKPTTAAPLIKMLCHQG------  103 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~~~~~~~~~~~~h~~------  103 (359)
                      +.+.++|.++++.+..+....  ...+..+|+++.+++++          ..-.|.+||..+..+...+.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            589999999999998887543  33467799999888753          334699999999877765542221      


Q ss_pred             -CeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcccee
Q 041916          104 -PVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       104 -~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~  178 (359)
                       ....++++.||+++++...  -.+|.+.|+...+.+.++  ++...-.-+-++++.+.|.||.+.-..+...++.....
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence             1234678889999887653  457999999999988888  33333333344558899999998888876554443221


Q ss_pred             ec--ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          179 MG--HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       179 ~~--~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ..  +.. ....+..-++...+..++.-+.+|.+.-+.
T Consensus       175 t~~F~~~-~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d  211 (342)
T PF06433_consen  175 TKVFDPD-DDPLFEHPAYSRDGGRLYFVSYEGNVYSAD  211 (342)
T ss_dssp             EEESSTT-TS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred             ccccCCC-CcccccccceECCCCeEEEEecCCEEEEEe
Confidence            11  110 112233445555555555566666555443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.82  E-value=0.0017  Score=63.65  Aligned_cols=130  Identities=8%  Similarity=0.027  Sum_probs=91.0

Q ss_pred             CEEEEE-eCCCeEEEEeCCCCcceEEEeccCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCce--eeE----e
Q 041916           73 GVVSLG-HSGGTVTMWKPTTAAPLIKMLCHQGP-VSALAFHP-----NGHLMATSGKECKIKIWDLRKYE--VLQ----T  139 (359)
Q Consensus        73 ~~l~sg-~~dg~v~lwd~~~~~~~~~~~~h~~~-v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--~~~----~  139 (359)
                      ++|+.. .....|+-.|+..|+.+..+..|... |..++=..     ++.-.++|-.+..+..||.|-..  ++.    .
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444443 34577999999999999999987654 55543221     12345666677899999999742  332    1


Q ss_pred             c--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          140 L--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       140 ~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      +  ....+|++-+.+| +++|+.+|.|++|| ..+......+.+.    +.+|..|..+.||++|++.+..
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~l----G~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGL----GDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCC----CCCeeEEEecCCCcEEEEeecc
Confidence            2  2356899999999 88888999999999 4443333344433    4599999999999998776655

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.0011  Score=58.27  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=85.3

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCC--Ce-----EEEEEecCCCCeEEEEEcCCC
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTM--GE-----IVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~--~~-----~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      ||.+|..|..+..+..+-.+ +.|+||||++.|+.+.. .+.|.-|++..  +.     ....+....+..-.++...+|
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG  224 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG  224 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence            56666678888888887766 99999999988877765 47888887752  21     112222344566678888888


Q ss_pred             CEEEEEeCCC-eEEEEeCCCCcceEEEeccCCCeEEEEEc-CCCCEEEEEeC
Q 041916           73 GVVSLGHSGG-TVTMWKPTTAAPLIKMLCHQGPVSALAFH-PNGHLMATSGK  122 (359)
Q Consensus        73 ~~l~sg~~dg-~v~lwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~~~~~  122 (359)
                      .+.+++..+| .|.+|++. ++.+..+.-....+++++|- |+.+.|++.+.
T Consensus       225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            8886665555 89999988 88888887666778888884 45566555543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.77  E-value=0.0034  Score=45.50  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=68.2

Q ss_pred             eEEEEEec---CC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916           21 VLKLQFLR---NH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        21 ~~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      +++|++..   || +.|++|+.|..|++|+-  ...+..+... +.|++++-... ..++.|..+|+|-+|+-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            35566554   33 67999999999999994  4677777654 56788877665 678899999999999753  2334


Q ss_pred             EEeccCCCeEEEEEcC---CCC-EEEEEeCCCeEE
Q 041916           97 KMLCHQGPVSALAFHP---NGH-LMATSGKECKIK  127 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~---~~~-~l~~~~~d~~i~  127 (359)
                      .... ...+.++++..   ||. -|++|-.+|.|-
T Consensus        76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4433 23356665543   333 488888888764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.75  E-value=0.0044  Score=51.64  Aligned_cols=105  Identities=15%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA  109 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~  109 (359)
                      |.+++.|...|-+++.+..+|.....+..-..-=......+++.++.+|+.|++.+..|+.+..++.+.+..-+...+-+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~  142 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV  142 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence            56788899999999999999987777764322112234567899999999999999999999988888776555555666


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916          110 FHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus       110 ~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      ..|-...|+.+...|.|.--...++
T Consensus       143 i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  143 IAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ecCCCceEEEEeccceEEEEccCCC
Confidence            7773334444555566555554443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00075  Score=61.45  Aligned_cols=139  Identities=17%  Similarity=0.248  Sum_probs=97.3

Q ss_pred             CCCE-EEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCcc--eEEE
Q 041916           29 NHFL-LASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-------VVSLGHSGGTVTMWKPTTAAP--LIKM   98 (359)
Q Consensus        29 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~sg~~dg~v~lwd~~~~~~--~~~~   98 (359)
                      +.++ |.++.....|+-.|+..|+.+..+..+.. |+-+.+.|++.       .-+.|-.|..|+-||++-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3444 34555567788999999999999998866 77788888753       123466788899999984322  2222


Q ss_pred             ecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEeccCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916           99 LCH----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTLPGHAKTLDFSQKG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus        99 ~~h----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~  169 (359)
                      ++|    .....|++-..+| +|++||.+|.|++||--.-..   +..+..+|..+..+.+| ++.+..+.+|.+.++.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            232    2245566655555 799999999999999733222   23335689999999999 7777778888888754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.0086  Score=55.30  Aligned_cols=178  Identities=15%  Similarity=0.109  Sum_probs=98.2

Q ss_pred             EEEEEecCCCEEEEEecC----------C-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           22 LKLQFLRNHFLLASINKF----------G-QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      ..++.+|.|..+|....+          . .|.||+.. |+.+.++.-..+.+.++.|+.+. .|++-..||.+++||+.
T Consensus        32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            345667777666665433          1 59999965 78888877656899999998865 45566799999999986


Q ss_pred             CCcceEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeE---eccCCce---------e-EEE
Q 041916           91 TAAPLIKM-------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQ---TLPGHAK---------T-LDF  149 (359)
Q Consensus        91 ~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~---~~~~~i~---------~-~~~  149 (359)
                       |+....+       ......+..+.+..+|-.+++  .++.+.+..--... ...   ..+....         . ..+
T Consensus       110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence             3331111       111122222233335533333  34444443221111 111   1111111         1 223


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +.+.  .+....++.+.+.+.... ..   +.     ..+++..++.||++++++.-+.+|.+.++
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~-~~---i~-----~~~~i~~iavSpng~~iAl~t~~g~l~v~  243 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSF-KQ---ID-----SDGPIIKIAVSPNGKFIALFTDSGNLWVV  243 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccc-cc---cc-----CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence            3333  444455566664442211 11   11     12379999999999999999999866554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.017  Score=48.92  Aligned_cols=156  Identities=11%  Similarity=0.085  Sum_probs=100.5

Q ss_pred             EEEeCCCcEEEEeccCCCeEEEEEecCC-CEEEEEecCCe-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEE
Q 041916            3 YIYNRDGTELHCLKEHGAVLKLQFLRNH-FLLASINKFGQ-LRYQDVTMGEIVGNFRTGLGR--TDVMRVNPFNGVVSLG   78 (359)
Q Consensus         3 ~iwd~~g~~~~~l~~h~~~~~l~~s~~~-~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~sg   78 (359)
                      -.++..|+++..+.-......|+|+|.. .-++.+-.-|+ -.++|..+++....+....+.  .-.=.|||||.+|+..
T Consensus        52 a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYAT  131 (366)
T COG3490          52 ATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYAT  131 (366)
T ss_pred             EEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEee
Confidence            3456677777666555555778888864 44555544443 468888877655554332221  1123689999998876


Q ss_pred             eC-----CCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEEcCCc
Q 041916           79 HS-----GGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGK------------------ECKIKIWDLRKY  134 (359)
Q Consensus        79 ~~-----dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~------------------d~~i~iwd~~~~  134 (359)
                      -.     -|.|-|||.+.+ +.+..+..|--.-..+.|.+||+.|+.+..                  .-++.+.|..++
T Consensus       132 Endfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG  211 (366)
T COG3490         132 ENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG  211 (366)
T ss_pred             cCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc
Confidence            43     378999998854 345567777666788999999999988753                  123555565666


Q ss_pred             eeeEec--c-----CCceeEEEcCCc-eEEEE
Q 041916          135 EVLQTL--P-----GHAKTLDFSQKG-LLAVG  158 (359)
Q Consensus       135 ~~~~~~--~-----~~i~~~~~s~~g-l~~~~  158 (359)
                      ..+...  +     -++..++..++| ++.++
T Consensus       212 ~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         212 NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             chhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            554433  2     257788888888 44443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.67  E-value=0.0046  Score=44.86  Aligned_cols=96  Identities=17%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccce
Q 041916          105 VSALAFHP---NG-HLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSR  177 (359)
Q Consensus       105 v~~i~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~  177 (359)
                      |+++++..   || +.|++||.|..|++|+-.  ..+.++  ...|++++-...+ ++.+-.+|+|-+|+- .. .....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~-~~-RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR-SQ-RLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC-cc-eeeee
Confidence            66777765   33 569999999999999865  455555  5678888888778 777778899999983 21 22222


Q ss_pred             eecccCCCCcceEEEEEeeCC----CEEEEEcCCCeE
Q 041916          178 YMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWS  210 (359)
Q Consensus       178 ~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~  210 (359)
                      -..+      .++++++..-.    .-|++|-++|.+
T Consensus        78 KSK~------~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   78 KSKN------QVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             ccCC------CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            2222      46666655433    257777777754

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.052  Score=50.41  Aligned_cols=186  Identities=13%  Similarity=0.043  Sum_probs=100.9

Q ss_pred             EEEEEecCCCEEEEE-ecC----CeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 041916           22 LKLQFLRNHFLLASI-NKF----GQLRYQDVTMGEIVGNF-RTGLGRTDVMRVNPFNGVVSLGHSGG-----------TV   84 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg-----------~v   84 (359)
                      ..+.+||+|++||.+ +..    ..|+++|+.+|+.+... ...  ....+.|.+++..|+....+.           .|
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            467889999988765 333    45999999999876532 221  123499999988766654332           37


Q ss_pred             EEEeCCCCcce--EEEeccCCC--eEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCc-----eeeEec---cCCceeEE
Q 041916           85 TMWKPTTAAPL--IKMLCHQGP--VSALAFHPNGHLMATSGK---E-CKIKIWDLRKY-----EVLQTL---PGHAKTLD  148 (359)
Q Consensus        85 ~lwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~l~~~~~---d-~~i~iwd~~~~-----~~~~~~---~~~i~~~~  148 (359)
                      ..|.+.+...-  ..+......  ...+..++|+++|+..+.   + ..+.+.|+..+     .+....   .+....+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888776543  444443333  567889999999765432   2 35888888764     222212   22333444


Q ss_pred             EcCCceEEEEc----CCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEeeCCCEEEE-EcCCCeEEEE
Q 041916          149 FSQKGLLAVGT----GSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRPYEDVLGI-GHSMGWSSIL  213 (359)
Q Consensus       149 ~s~~gl~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~~~i~  213 (359)
                      ...+.++..+.    .+.|.-.++.....  ....+..+.  ....+..+.  ..+++|+. ...++...+.
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVS--LFKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEE--EETTEEEEEEEETTEEEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC--CceeEEEEE--EECCEEEEEEEECCccEEE
Confidence            44333444432    25677777655432  122344442  112344443  44555444 3444544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.62  E-value=0.015  Score=52.06  Aligned_cols=172  Identities=16%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             CeEEEEECCCCeEEEEEecC-CCCeEEEE---EcCC----CCEEEEEeC----------CCeEEEEeCCCC----cceEE
Q 041916           40 GQLRYQDVTMGEIVGNFRTG-LGRTDVMR---VNPF----NGVVSLGHS----------GGTVTMWKPTTA----APLIK   97 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~---~sp~----~~~l~sg~~----------dg~v~lwd~~~~----~~~~~   97 (359)
                      +.|++.|..+.+.+.++.-. ...+.+++   +..+    ..+|++|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36889998888877666532 23344443   3332    467777752          289999999873    12222


Q ss_pred             E--eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEe--ccC--CceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916           98 M--LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQT--LPG--HAKTLDFSQKGLLAVGTGSFVQILGDFS  170 (359)
Q Consensus        98 ~--~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~--~~~--~i~~~~~s~~gl~~~~~d~~i~i~d~~~  170 (359)
                      +  ....++|++++-- .+ +|+++. .+.|.+|++...+ ....  +..  .+.++....+-++++.....+.++....
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            2  2457889998866 34 444444 4789999998776 3322  233  4566665544466666667777664323


Q ss_pred             CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          171 GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      ....+..+....  ....++++.|-++++.++++..+|.+.++-..
T Consensus       159 ~~~~l~~va~d~--~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  159 ENNKLILVARDY--QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTE-EEEEEEES--S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCEEEEEEecC--CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            222233333221  23368999999777888898888877766543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.61  E-value=0.027  Score=51.55  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=104.2

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCe-------------------------------------------EEEEEe
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-------------------------------------------IVGNFR   57 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------~~~~~~   57 (359)
                      ++.++|+++..-|++|..+|.|.||.....+                                           +...+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            4788999988888888889988888653211                                           111233


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--c------cCCCeEEEEEcC-----CC---CEEEEEe
Q 041916           58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--C------HQGPVSALAFHP-----NG---HLMATSG  121 (359)
Q Consensus        58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~------h~~~v~~i~~~~-----~~---~~l~~~~  121 (359)
                      ...++|++++.| +=.++|.|..+|.+.|.|++....+..-.  .      ....|+++.|.-     |+   -.|++|+
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            456889999987 44599999999999999998776555422  1      234678888863     33   4688899


Q ss_pred             CCCeEEEEEcCC---cee----eEe---ccCCceeEE-EcC----------------------CceEEEEcCCcEEEEcC
Q 041916          122 KECKIKIWDLRK---YEV----LQT---LPGHAKTLD-FSQ----------------------KGLLAVGTGSFVQILGD  168 (359)
Q Consensus       122 ~d~~i~iwd~~~---~~~----~~~---~~~~i~~~~-~s~----------------------~gl~~~~~d~~i~i~d~  168 (359)
                      ..|.+.+|.+.-   +..    ...   ..+++..+. ++.                      .|+++++.+..++++.+
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998752   111    111   123333332 211                      12667777889999987


Q ss_pred             CCCCCccceeecccCCCCcceEEEEEe-----eCCCEEEEEcCCCeEEEE
Q 041916          169 FSGSHNYSRYMGHSMVKGYQIGKVSFR-----PYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~dg~~~i~  213 (359)
                      .+.......+ ....    ....+++.     ..+..|++-..+|.+.++
T Consensus       243 ~~~k~~~K~~-~~~~----~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  243 PKSKGAHKSF-DDPF----LCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             T---EEEEE--SS-E----EEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             CCCcccceee-cccc----ccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence            6653222222 2211    34445553     244455555555544443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.61  E-value=0.00059  Score=64.03  Aligned_cols=110  Identities=12%  Similarity=0.055  Sum_probs=79.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-eE-EEEcCCcEEEEcCCCCCCccce
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG-LL-AVGTGSFVQILGDFSGSHNYSR  177 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g-l~-~~~~d~~i~i~d~~~~~~~~~~  177 (359)
                      .|.--+++..+.+++.|+.-|.+++|+-..+.....-    .+.+..+++|++. ++ +++..|.|.++-+.........
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            3444455668899999999999999998776543322    2345677788888 44 4556689999987665455455


Q ss_pred             eecccC-CCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          178 YMGHSM-VKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       178 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +..+.. .+...|++++|++++..|.+|...|.+...
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            544422 145689999999999999999999976553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.55  E-value=0.0041  Score=59.44  Aligned_cols=114  Identities=15%  Similarity=0.373  Sum_probs=80.6

Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEc--CCCCEEEEEeCCCeEEEEE
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFH--PNGHLMATSGKECKIKIWD  130 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~--~~~~~l~~~~~d~~i~iwd  130 (359)
                      .++......+.-+.-|.-+...++.+....+.|||.+.+.....-. ...+.|.++.|.  |+|+.+++.|-.+.|.+|-
T Consensus        23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3444444555556556655555555566679999998876433222 447789999996  5899999999999999985


Q ss_pred             cC-----C----ceeeEec------cCCceeEEEcCCceEEEEcCCcEEEEc
Q 041916          131 LR-----K----YEVLQTL------PGHAKTLDFSQKGLLAVGTGSFVQILG  167 (359)
Q Consensus       131 ~~-----~----~~~~~~~------~~~i~~~~~s~~gl~~~~~d~~i~i~d  167 (359)
                      -.     +    +.++..+      +.+|.+..|.++|.++++.++.+.|+|
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d  154 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD  154 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence            42     1    2334443      467899999999977777789999998

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.50  E-value=0.021  Score=52.18  Aligned_cols=197  Identities=12%  Similarity=0.045  Sum_probs=102.7

Q ss_pred             EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--c------CCCCeEEEEEcC-----CC---CEEE
Q 041916           14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--T------GLGRTDVMRVNP-----FN---GVVS   76 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~sp-----~~---~~l~   76 (359)
                      .+....+. ++++.| |=-++|.|..+|.+.|.|++....+..-.  .      ....++++.|+.     |+   -.++
T Consensus        81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            34444454 888887 44578999999999999998777665422  2      224577888862     23   3788


Q ss_pred             EEeCCCeEEEEeCC--C-Ccce----EEEeccCCCeEEEE-EcCC-----------------C---CEEEEEeCCCeEEE
Q 041916           77 LGHSGGTVTMWKPT--T-AAPL----IKMLCHQGPVSALA-FHPN-----------------G---HLMATSGKECKIKI  128 (359)
Q Consensus        77 sg~~dg~v~lwd~~--~-~~~~----~~~~~h~~~v~~i~-~~~~-----------------~---~~l~~~~~d~~i~i  128 (359)
                      +|...|.+.+|.+.  . +...    .....+.++|..|. |+.+                 |   +-++..+.+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 1111    11124556666555 3221                 0   12344444678999


Q ss_pred             EEcCCceeeEec-cCCc--eeEEEc-----CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          129 WDLRKYEVLQTL-PGHA--KTLDFS-----QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       129 wd~~~~~~~~~~-~~~i--~~~~~s-----~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      +..-+.+..+.. ..++  ..+++-     ..+  +++...+|.+++|.+..- +.+....-........+...+++++|
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCC
Confidence            999887765544 3322  334442     233  777788999999997654 22222222111011235567789999


Q ss_pred             CEEEEEcCCCeEEE
Q 041916          199 DVLGIGHSMGWSSI  212 (359)
Q Consensus       199 ~~l~~~~~dg~~~i  212 (359)
                      +.++-.+......+
T Consensus       319 di~~~~gpsE~~l~  332 (395)
T PF08596_consen  319 DIFYWTGPSEIQLF  332 (395)
T ss_dssp             -EEEE-SSSEEEEE
T ss_pred             CEEEEeCcccEEEE
Confidence            88776666554333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0035  Score=61.89  Aligned_cols=100  Identities=20%  Similarity=0.267  Sum_probs=73.9

Q ss_pred             CCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEE
Q 041916           30 HFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSAL  108 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i  108 (359)
                      +..++.|+..|.|-..|+... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++++..+..|..+.+++
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            456788888899988887642 1112222345799999999999999999999999999999999888888666665554


Q ss_pred             EE---cCCCCEEEEEeCCCeEEEEEc
Q 041916          109 AF---HPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus       109 ~~---~~~~~~l~~~~~d~~i~iwd~  131 (359)
                      -+   ..++..++++...|.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   345666777766665  5654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0036  Score=57.19  Aligned_cols=127  Identities=8%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEEcCCcee-e------Eec
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL-------MATSGKECKIKIWDLRKYEV-L------QTL  140 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-------l~~~~~d~~i~iwd~~~~~~-~------~~~  140 (359)
                      |.++.....++-.|+..|+.+..+.-+.+ |+-+.+.|+...       -+.|-.|..|.-||+|-... .      +.+
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            34455556688889999999999987777 777788886432       23455678899999985321 1      111


Q ss_pred             --cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          141 --PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       141 --~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                        .....|++-..+| +++++.+|.|++||- .+......+.+.    +.+|..|..+.+|+++++.+..
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----G~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL----GDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc----CCceeeEEeeccCcEEEEeccc
Confidence              2346788888899 888999999999994 554444445544    3499999999999988765544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.29  E-value=0.1  Score=45.37  Aligned_cols=140  Identities=15%  Similarity=0.097  Sum_probs=86.7

Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE---------
Q 041916           28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM---------   98 (359)
Q Consensus        28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~---------   98 (359)
                      ..++.|+.|..+| |.++++........+. +..+|..+...|+-+.|++-+ |+.+.++++.........         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998888 8999983332222222 223499999998877766554 499999998765433311         


Q ss_pred             -----eccCCCeEEEE--EcCCCCEEEEEeCCCeEEEEEcCCc-----eeeEec--cCCceeEEEcCCceEEEEcCCcEE
Q 041916           99 -----LCHQGPVSALA--FHPNGHLMATSGKECKIKIWDLRKY-----EVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQ  164 (359)
Q Consensus        99 -----~~h~~~v~~i~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~  164 (359)
                           ......+...+  -.+.+...+.+.....|.+|.....     .....+  +..+.+++|.++.++.+. .+...
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~  160 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFY  160 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceE
Confidence                 11222344444  1123444444444568888877652     455555  778999999966555444 55678


Q ss_pred             EEcCCCC
Q 041916          165 ILGDFSG  171 (359)
Q Consensus       165 i~d~~~~  171 (359)
                      +.|+.++
T Consensus       161 ~idl~~~  167 (275)
T PF00780_consen  161 LIDLNTG  167 (275)
T ss_pred             EEecCCC
Confidence            8887654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.25  E-value=0.026  Score=48.48  Aligned_cols=145  Identities=14%  Similarity=0.176  Sum_probs=85.8

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-cCCcee-
Q 041916           62 RTDVMRVNPFNGVVSLGH---SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD-LRKYEV-  136 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~---~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd-~~~~~~-  136 (359)
                      .+...++++++..++...   ....+.++..  +.....+. ....++..+|++++...+....+...+++. ...+.. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999998776655   3334555543  33333322 223678899999988777766666666663 333322 


Q ss_pred             -eEe--c--cCCceeEEEcCCc--eEEEE---cCCcEEEEcCCCCCCc--cceeecccC--CCCcceEEEEEeeCCCEEE
Q 041916          137 -LQT--L--PGHAKTLDFSQKG--LLAVG---TGSFVQILGDFSGSHN--YSRYMGHSM--VKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       137 -~~~--~--~~~i~~~~~s~~g--l~~~~---~d~~i~i~d~~~~~~~--~~~~~~~~~--~~~~~v~~~~~~p~~~~l~  202 (359)
                       +..  .  .+.|+++.+||||  ++...   .++.|.+--+..+..-  .........  .....+.++.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             111  1  2379999999999  33332   3567777643322111  111000000  0234789999999999887


Q ss_pred             EEcCCCe
Q 041916          203 IGHSMGW  209 (359)
Q Consensus       203 ~~~~dg~  209 (359)
                      .+...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            7766553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.23  E-value=0.13  Score=45.41  Aligned_cols=205  Identities=13%  Similarity=0.060  Sum_probs=119.4

Q ss_pred             eEEEe-CCCcEEEEeccCC------Ce--EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916            2 PYIYN-RDGTELHCLKEHG------AV--LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~------~~--~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp   70 (359)
                      |.+|| .+-.....+.-..      .+  ..+++++|+++++....  ..+|.|-|+..++.+..+.... ...   .-|
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~---iyP  144 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWL---IYP  144 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEE---EEE
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEE---EEe
Confidence            67899 6555544332211      12  56788999998887654  5689999999999998887542 121   123


Q ss_pred             CC-CEEEEEeCCCeEEEEeCC-CCcceEEEe----ccCCCe-EEEEEcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-
Q 041916           71 FN-GVVSLGHSGGTVTMWKPT-TAAPLIKML----CHQGPV-SALAFHPNGHLMATSGKECKIKIWDLRKYEVL--QTL-  140 (359)
Q Consensus        71 ~~-~~l~sg~~dg~v~lwd~~-~~~~~~~~~----~h~~~v-~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-  140 (359)
                      .+ .-+.+-|.||.+.-..+. .|+...+..    .-.+++ ..-++...+..++..+.+|.|+--|+......  ..+ 
T Consensus       145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence            22 457888999999998887 455443221    112222 23445556666777889999999999865421  111 


Q ss_pred             ------------cCCceeEEEcCCc--eEEEE---cC-------CcEEEEcCCCCCCccceee-cccCCCCcceEEEEEe
Q 041916          141 ------------PGHAKTLDFSQKG--LLAVG---TG-------SFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFR  195 (359)
Q Consensus       141 ------------~~~i~~~~~s~~g--l~~~~---~d-------~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~  195 (359)
                                  ++.-.-+++++..  +++.-   .+       ..|-+||+.+. +.+..+. .+      ++.+|..+
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~------~~~Si~Vs  297 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEH------PIDSIAVS  297 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEEE------EESEEEEE
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCCC------ccceEEEc
Confidence                        2334567777644  33321   11       25777787766 3444443 44      67888888


Q ss_pred             eCCC-EEEEE-cCCCeEEEEEcCC
Q 041916          196 PYED-VLGIG-HSMGWSSILVPGS  217 (359)
Q Consensus       196 p~~~-~l~~~-~~dg~~~i~~~~~  217 (359)
                      .+.. .|++. ..++.+.++...+
T Consensus       298 qd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  298 QDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             SSSS-EEEEEETTTTEEEEEETTT
T ss_pred             cCCCcEEEEEcCCCCeEEEEeCcC
Confidence            8776 33322 2345455554433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.16  E-value=0.043  Score=52.92  Aligned_cols=195  Identities=13%  Similarity=0.124  Sum_probs=98.6

Q ss_pred             EEEEEecCCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEe
Q 041916           22 LKLQFLRNHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGGT-----VTMWK   88 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg~-----v~lwd   88 (359)
                      .++++. ++.+.++||.|      .++..||..+++-..  .+........ ++ .-+|.+.|+|+.||.     |..||
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YD  402 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYD  402 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEec
Confidence            455554 35777888888      467788887765222  1111111111 11 225778889998874     77888


Q ss_pred             CCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC------eEEEEEcCCcee--eEecc--CCceeEEEcCCc-eE
Q 041916           89 PTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKEC------KIKIWDLRKYEV--LQTLP--GHAKTLDFSQKG-LL  155 (359)
Q Consensus        89 ~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~------~i~iwd~~~~~~--~~~~~--~~i~~~~~s~~g-l~  155 (359)
                      +.+.+  .+..+...........  -+|.+.++||.++      ++..||..+...  +..+.  ..-..++.-.+. ++
T Consensus       403 p~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv  480 (571)
T KOG4441|consen  403 PVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV  480 (571)
T ss_pred             CCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE
Confidence            77643  2222221111122222  2677777777554      577888877543  33331  112234444444 45


Q ss_pred             EEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEE-EEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916          156 AVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKV-SFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA  227 (359)
Q Consensus       156 ~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~  227 (359)
                      ++|.++     .|..||..++.=........      +...+ ...-++...++|+.+|...+=..-..|...+.|..
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQWTMVAPMTS------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCceeEcccCcc------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            555554     47788876652111111111      11111 12334666777777764443333333555555543

>PHA02713 hypothetical protein; Provisional

Probab=97.02  E-value=0.11  Score=50.22  Aligned_cols=138  Identities=8%  Similarity=0.023  Sum_probs=68.5

Q ss_pred             CCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCc--
Q 041916           29 NHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTAA--   93 (359)
Q Consensus        29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~~--   93 (359)
                      ++.+.+.||.+      ..+..||+.+..-..  .+....... +++ .-+|.+.+.|+.++     +|..||+.+.+  
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56677777753      357788887664211  111111111 222 23567778888764     48889987653  


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----------------------eEEEEEcCCce--eeEeccC-Cc-ee
Q 041916           94 PLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----------------------KIKIWDLRKYE--VLQTLPG-HA-KT  146 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~--~~~~~~~-~i-~~  146 (359)
                      .+..+.........+++  +|...+.||.++                       .+..||..+.+  .+..+.. .. .+
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            11122111111122222  566667776542                       47778877643  3333311 11 22


Q ss_pred             EEEcCCc-eEEEEcC------CcEEEEcCCC
Q 041916          147 LDFSQKG-LLAVGTG------SFVQILGDFS  170 (359)
Q Consensus       147 ~~~s~~g-l~~~~~d------~~i~i~d~~~  170 (359)
                      ++...+. ++.||.+      ..+..||+.+
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            3333333 4445433      2467888765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.99  E-value=0.088  Score=46.18  Aligned_cols=140  Identities=12%  Similarity=0.066  Sum_probs=76.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~-  100 (359)
                      ..+..++||.++++++.-..+.-||.-...-...-+.....|..|.|+|++.+.+.+ ..|.|++=+...  ....+.. 
T Consensus       148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~  224 (302)
T PF14870_consen  148 NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEP  224 (302)
T ss_dssp             EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---
T ss_pred             EeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cccccccc
Confidence            778889999999988766666788854322222222345789999999998876654 888888766211  1122211 


Q ss_pred             ------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEe---ccCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916          101 ------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQT---LPGHAKTLDFSQKG-LLAVGTGSFVQIL  166 (359)
Q Consensus       101 ------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~---~~~~i~~~~~s~~g-l~~~~~d~~i~i~  166 (359)
                            ..-.+.+++|.+++...++|+. |.+. .....|+   ....   +++....+.|.+.. -++.+.+|.|--|
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence                  1223789999998877776664 4333 2333333   2222   24557888886655 7788888887655

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.97  E-value=0.055  Score=47.07  Aligned_cols=134  Identities=14%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-----------
Q 041916           70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-----------  138 (359)
Q Consensus        70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------  138 (359)
                      ..++.|+.|..+| |.++++........+. +...|..+...|+-+.|++-+ |+.+.++++.......           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3567899999999 8999983332222222 233499999999888777765 4999999997754333           


Q ss_pred             ----ec--cCCceeEE--EcCCc--eEEEEcCCcEEEEcCCCCCCcc-ceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          139 ----TL--PGHAKTLD--FSQKG--LLAVGTGSFVQILGDFSGSHNY-SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       139 ----~~--~~~i~~~~--~s~~g--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                          .+  ...+..++  -.+.+  .+++.....|.+|......... ..+.....  ...+.+++|.  ++.+++|..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--p~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--PDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--CCCcEEEEEe--CCEEEEEeCC
Confidence                12  12333333  11223  6667777788888765431111 12222211  1268899999  6778888777


Q ss_pred             CeE
Q 041916          208 GWS  210 (359)
Q Consensus       208 g~~  210 (359)
                      ++.
T Consensus       158 ~f~  160 (275)
T PF00780_consen  158 GFY  160 (275)
T ss_pred             ceE
Confidence            743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0099  Score=59.19  Aligned_cols=181  Identities=9%  Similarity=-0.008  Sum_probs=105.5

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCC-------Ce----E-----EEEEecC-CCCeEEEEEcCCCCEEEEE--eCCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTM-------GE----I-----VGNFRTG-LGRTDVMRVNPFNGVVSLG--HSGG   82 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~----~-----~~~~~~~-~~~v~~~~~sp~~~~l~sg--~~dg   82 (359)
                      +.++.++.-.++++++..+.+.|+-...       +.    .     ...+.-| .-++..+..++|+...++.  +.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            4556666544555556666666665421       11    0     1122222 2356667777887554443  3444


Q ss_pred             eEEEEeCCCCcceE-----EEe------ccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce-eeEec--cCCceeE
Q 041916           83 TVTMWKPTTAAPLI-----KML------CHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYE-VLQTL--PGHAKTL  147 (359)
Q Consensus        83 ~v~lwd~~~~~~~~-----~~~------~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~i~~~  147 (359)
                      .|..||+.+.....     .+.      .......++.|+|.-. ..+++..|+.|.+.-+.... .+..+  ....+++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav  204 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV  204 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence            78999987532111     111      1223456888998543 35667788888888765432 23333  4467999


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +|+|.|  ++++-..|++.-|.. .. +....+........+.|.+|+|.....++++-
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~P-~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYEP-SL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             EeccccceeeEecCCCeEEEeec-cc-ceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            999999  666667799998863 32 22222222222134589999999887777653

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.23  Score=42.64  Aligned_cols=151  Identities=6%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           57 RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        57 ~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      .+-...+.++.|+|+.+.|++......-.||=...|..+.++.  +- .....|.+..+|.+.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3444569999999999988888888777777666788777764  22 23356888888888888778888888877654


Q ss_pred             eeeEe-------c------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc--eeecccCC---CCcceEEEEE
Q 041916          135 EVLQT-------L------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS--RYMGHSMV---KGYQIGKVSF  194 (359)
Q Consensus       135 ~~~~~-------~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~---~~~~v~~~~~  194 (359)
                      ..+..       +      +...-.++|+|..  ++++-.-+=+.||....+.....  ....+...   .-..|.++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            32211       1      1235789999987  66666555555554332211111  11111100   0124777888


Q ss_pred             eeCCC-EEEEEcCCC
Q 041916          195 RPYED-VLGIGHSMG  208 (359)
Q Consensus       195 ~p~~~-~l~~~~~dg  208 (359)
                      .+... .|+.+..++
T Consensus       241 ~~~~~~LLVLS~ESr  255 (316)
T COG3204         241 NAITNSLLVLSDESR  255 (316)
T ss_pred             cCCCCcEEEEecCCc
Confidence            87544 455555554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.87  E-value=0.0041  Score=37.74  Aligned_cols=34  Identities=18%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916          102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV  136 (359)
Q Consensus       102 ~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~  136 (359)
                      ...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999999999999999999998 4543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.86  E-value=0.15  Score=46.38  Aligned_cols=188  Identities=12%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             CCEEEEEe-cCCeEEEEECCC----CeEEEEEec-------CCCCeEEEEEcCCCCEEEEEe--C----CCeEEEEeCCC
Q 041916           30 HFLLASIN-KFGQLRYQDVTM----GEIVGNFRT-------GLGRTDVMRVNPFNGVVSLGH--S----GGTVTMWKPTT   91 (359)
Q Consensus        30 ~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~-------~~~~v~~~~~sp~~~~l~sg~--~----dg~v~lwd~~~   91 (359)
                      .++|+..+ .++.|.|+|+.+    .+....+..       .-...+.+-.-|+|.+++++-  .    -|-+.++|-.+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45666665 678999999974    234444442       112344555568898888752  2    24588888877


Q ss_pred             CcceEEEecc---CCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEEcCCceeeEecc----C-C
Q 041916           92 AAPLIKMLCH---QGPVSALAFHPNGHLMATSGK--------------------ECKIKIWDLRKYEVLQTLP----G-H  143 (359)
Q Consensus        92 ~~~~~~~~~h---~~~v~~i~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~----~-~  143 (359)
                      ......+...   ...-..+.|.|..+.|+|+..                    ..++.+||+.+.++++++.    + -
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            7766666532   223467888998889988742                    3579999999999999882    2 2


Q ss_pred             ceeEEEc--CCc---eEEEEcCCcEEEEcCCCCCC----ccceeecc-----cCC--------CCcceEEEEEeeCCCEE
Q 041916          144 AKTLDFS--QKG---LLAVGTGSFVQILGDFSGSH----NYSRYMGH-----SMV--------KGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       144 i~~~~~s--~~g---l~~~~~d~~i~i~d~~~~~~----~~~~~~~~-----~~~--------~~~~v~~~~~~p~~~~l  201 (359)
                      +..+.|.  |+.   ++.+...++|..|--..+..    .+..+...     ...        -..-|++|..|.|.++|
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL  326 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL  326 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence            4556664  443   66666666666554212211    01111100     000        01247888899998866


Q ss_pred             EEEcCCCeEEEEEcCCCCCccccccCC
Q 041916          202 GIGHSMGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       202 ~~~~~dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                                 |++.-..|.++.|++.
T Consensus       327 -----------Yvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  327 -----------YVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             -----------EEEETTTTEEEEEE-S
T ss_pred             -----------EEEcccCCcEEEEecC
Confidence                       4455567777778774

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.86  E-value=0.25  Score=42.42  Aligned_cols=136  Identities=14%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CeEEEEEecCCCEEEEEe---cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCcce
Q 041916           20 AVLKLQFLRNHFLLASIN---KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK-PTTAAPL   95 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd-~~~~~~~   95 (359)
                      .+.+.++++++..+|...   ....|.++..  +.....+. ....+....|++++...+....+....++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            358899999998776655   3345555554  33333322 223678889999988888777676667663 3333321


Q ss_pred             -EEEec--cCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC---c------eeeEec---cCCceeEEEcCCc-eEE
Q 041916           96 -IKMLC--HQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK---Y------EVLQTL---PGHAKTLDFSQKG-LLA  156 (359)
Q Consensus        96 -~~~~~--h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~---~------~~~~~~---~~~i~~~~~s~~g-l~~  156 (359)
                       ..+..  -.+.|+++.+||||..++...   .++.|.+--+..   +      .++...   ...+..++|.+++ |++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             22221  122899999999999987766   346777765431   2      111111   2467899999999 555


Q ss_pred             EE
Q 041916          157 VG  158 (359)
Q Consensus       157 ~~  158 (359)
                      .+
T Consensus       182 ~~  183 (253)
T PF10647_consen  182 LG  183 (253)
T ss_pred             Ee
Confidence            44

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.86  E-value=0.29  Score=43.02  Aligned_cols=144  Identities=14%  Similarity=0.197  Sum_probs=76.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Ccee
Q 041916           58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEV  136 (359)
Q Consensus        58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~  136 (359)
                      .-.+.+..+.-+++|.++++++......-||.-...-...-..-...|.++.|+|++.+.+++ ..|.|++=+.. ....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            345678888899999999888776666788865322222222345789999999998876654 78888888722 2222


Q ss_pred             eEe----c--cC-CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          137 LQT----L--PG-HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       137 ~~~----~--~~-~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      -..    .  .+ .+..++|.+++ +.+++..|.|.+=. ..+ +.-+....-.. -.+.++.+.|.+..+-++.|.
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~-DgG-ktW~~~~~~~~-~~~n~~~i~f~~~~~gf~lG~  294 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVST-DGG-KTWQKDRVGEN-VPSNLYRIVFVNPDKGFVLGQ  294 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEES-STT-SS-EE-GGGTT-SSS---EEEEEETTEEEEE-S
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeC-CCC-ccceECccccC-CCCceEEEEEcCCCceEEECC
Confidence            111    1  12 36889999988 77888777665532 233 44333322111 122689999988766555544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.85  E-value=0.00031  Score=67.67  Aligned_cols=145  Identities=18%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCCeEEEE
Q 041916           22 LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR-----------VNPFNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        22 ~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~sg~~dg~v~lw   87 (359)
                      .-+.|.|   +..+++.+-.++.|++.+..+... ..+.+|...+..++           .||||..++.++.||.+..|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            5666766   456778888889999888764321 33445665554443           58999999999999998888


Q ss_pred             eCC-----CCcceEEEeccC-CCeEEEEEcCC-------CC--EEEEEe-CCCeEEEEEcCCceeeEec-cCCceeEEEc
Q 041916           88 KPT-----TAAPLIKMLCHQ-GPVSALAFHPN-------GH--LMATSG-KECKIKIWDLRKYEVLQTL-PGHAKTLDFS  150 (359)
Q Consensus        88 d~~-----~~~~~~~~~~h~-~~v~~i~~~~~-------~~--~l~~~~-~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s  150 (359)
                      .+.     ...++..+..|. ++-.|.-|+..       |.  ++++++ .+..+++|....++|+..+ ...+..+. -
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~-p  341 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVG-P  341 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeec-C
Confidence            653     234555566665 33323224321       22  233433 4567999999888886333 33344444 2


Q ss_pred             CCc--------------eEEEEcCCcEEEEcC
Q 041916          151 QKG--------------LLAVGTGSFVQILGD  168 (359)
Q Consensus       151 ~~g--------------l~~~~~d~~i~i~d~  168 (359)
                      ++|              ++.-+.++.|.+|.-
T Consensus       342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             CCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            333              222345788888863

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0049  Score=37.39  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      ...|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356999999999999999999999999998 4443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.85  E-value=0.48  Score=45.43  Aligned_cols=153  Identities=11%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             EEEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCCCCe---------EEEEEcCCCC---
Q 041916           22 LKLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGLGRT---------DVMRVNPFNG---   73 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~sp~~~---   73 (359)
                      ..+++.|...+|+.+..+                .+|.-.|++||+....++.....+         .-+....+|.   
T Consensus       237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~  316 (527)
T TIGR03075       237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK  316 (527)
T ss_pred             CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence            456777766666655411                278888999999988887522221         1222334565   


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEE--------Ee---c-cCC-C-----------------e-----------EEEEEcC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIK--------ML---C-HQG-P-----------------V-----------SALAFHP  112 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~--------~~---~-h~~-~-----------------v-----------~~i~~~~  112 (359)
                      .++.+..+|.+++.|-.+++++..        +.   . ..+ +                 +           ..++++|
T Consensus       317 ~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp  396 (527)
T TIGR03075       317 LLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSP  396 (527)
T ss_pred             EEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECC
Confidence            788899999999999999887521        10   0 000 0                 0           1256666


Q ss_pred             CCCEEEEEeCC---------------------------------CeEEEEEcCCceeeEeccC--C-ceeEEEcCCc-eE
Q 041916          113 NGHLMATSGKE---------------------------------CKIKIWDLRKYEVLQTLPG--H-AKTLDFSQKG-LL  155 (359)
Q Consensus       113 ~~~~l~~~~~d---------------------------------~~i~iwd~~~~~~~~~~~~--~-i~~~~~s~~g-l~  155 (359)
                      +..+++....+                                 |.|.-+|+.+++.+..++.  + ..+......+ ++
T Consensus       397 ~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf  476 (527)
T TIGR03075       397 KTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVF  476 (527)
T ss_pred             CCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEE
Confidence            65555443322                                 4577888888887776632  1 1222222334 55


Q ss_pred             EEEcCCcEEEEcCCCCCCc
Q 041916          156 AVGTGSFVQILGDFSGSHN  174 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~  174 (359)
                      +++.+|.++.+|..++...
T Consensus       477 ~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       477 YGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             EECCCCeEEEEECCCCCEe
Confidence            6666899999998888433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.78  E-value=0.081  Score=50.86  Aligned_cols=108  Identities=14%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEeCC--------
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVN--PFNGVVSLGHSGGTVTMWKPT--------   90 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~sg~~dg~v~lwd~~--------   90 (359)
                      .-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |+++.+++.+....|.+|.-.        
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            444445545544444455689999998877433222 346789999984  688888888899999998521        


Q ss_pred             -CCcceEEEe--ccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916           91 -TAAPLIKML--CHQ-GPVSALAFHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus        91 -~~~~~~~~~--~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                       +..++..+.  .|. .+|.+..|.++|.+++.+|  +.+.++|-
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence             123344432  333 5799999999997665544  57888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.75  E-value=0.3  Score=44.53  Aligned_cols=138  Identities=12%  Similarity=0.132  Sum_probs=79.1

Q ss_pred             CCeEEEEEecCCCEEEEEe-----------cCC-eEEEEECCC--Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916           19 GAVLKLQFLRNHFLLASIN-----------KFG-QLRYQDVTM--GE--IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG   82 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg   82 (359)
                      ..+..|+|.++|+++++-.           ..+ .|.+++-.+  |.  ....+.......+.|++.+++ +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3458999999999877642           223 677776543  33  234444444567889999988 444 44444


Q ss_pred             eEEEEeCCCC-----cceEE---Eec----cCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEEc
Q 041916           83 TVTMWKPTTA-----APLIK---MLC----HQGPVSALAFHPNGHLMATSGKE-------------------CKIKIWDL  131 (359)
Q Consensus        83 ~v~lwd~~~~-----~~~~~---~~~----h~~~v~~i~~~~~~~~l~~~~~d-------------------~~i~iwd~  131 (359)
                      ..++.|....     +....   +..    +......++|.|||.+.++.+..                   +.|.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354321     21111   211    12346789999999876654421                   34555565


Q ss_pred             CCceeeEec-cC--CceeEEEcCCc-eEEEEc
Q 041916          132 RKYEVLQTL-PG--HAKTLDFSQKG-LLAVGT  159 (359)
Q Consensus       132 ~~~~~~~~~-~~--~i~~~~~s~~g-l~~~~~  159 (359)
                      .++.. ..+ .+  ....++|+|+| ++++..
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            54432 222 22  34789999999 655543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.1  Score=50.12  Aligned_cols=163  Identities=16%  Similarity=0.221  Sum_probs=91.9

Q ss_pred             CeEEEeCCCcEEEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYNRDGTELHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF----RTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l   75 (359)
                      +|+||+.+|.++..+. .|..+-.+.|+.+..+|+ ...+|++.+|++- |......    ......|..+.|..+|-.+
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVav  142 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAV  142 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEE
Confidence            4788998898876655 455669999998876655 5689999999985 4333321    1122234444444444222


Q ss_pred             EEEeCCCeEEEE------------------------eCCCCc----ce---------------------EEEeccCCCeE
Q 041916           76 SLGHSGGTVTMW------------------------KPTTAA----PL---------------------IKMLCHQGPVS  106 (359)
Q Consensus        76 ~sg~~dg~v~lw------------------------d~~~~~----~~---------------------~~~~~h~~~v~  106 (359)
                      .+  .+|.+.+-                        .+....    .+                     ..+....+.+.
T Consensus       143 lt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~  220 (829)
T KOG2280|consen  143 LT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV  220 (829)
T ss_pred             Ee--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence            22  22222221                        111100    00                     00001113456


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc----CCceeEEEcCCceEEEEcCCcEEEEc
Q 041916          107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----GHAKTLDFSQKGLLAVGTGSFVQILG  167 (359)
Q Consensus       107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~i~~~~~s~~gl~~~~~d~~i~i~d  167 (359)
                      -+++||+..+|+.=..+|.|.+-++...+....+.    .+...++|.-+.-++++....+.+..
T Consensus       221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvg  285 (829)
T KOG2280|consen  221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVG  285 (829)
T ss_pred             EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEc
Confidence            67778888888887888888887777666555552    23456777665544555555555554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.71  E-value=0.32  Score=41.47  Aligned_cols=152  Identities=14%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+.+| .+|+......-....  -.++...| .+..-.-.++...+||..+.+.+.++.-. +.=+.++  .++..|+.+
T Consensus        70 l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~S  145 (264)
T PF05096_consen   70 LRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMS  145 (264)
T ss_dssp             EEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE
T ss_pred             EEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEE
Confidence            67788 778776655544443  66666654 34444467899999999999999888754 4556777  456666666


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------c
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------P  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~  141 (359)
                      .....++.+|+.+.+....+....     ..++-+.|- +|...|-.=....|...|..+|..+..+            .
T Consensus       146 DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~  224 (264)
T PF05096_consen  146 DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK  224 (264)
T ss_dssp             -SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred             CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence            667789999999887766665321     245566664 5666666656678888899998876654            0


Q ss_pred             ------CCceeEEEcCCc--eEEEE
Q 041916          142 ------GHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       142 ------~~i~~~~~s~~g--l~~~~  158 (359)
                            .-.+.|++.|.+  +++.|
T Consensus       225 ~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccCCeeEeEeEeCCCCEEEEEe
Confidence                  124889998877  55555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.0047  Score=61.01  Aligned_cols=70  Identities=26%  Similarity=0.486  Sum_probs=55.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           71 FNGVVSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      .+..++.|+..|.|...|++.. .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..+++++.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            3456888999999999988753 222221234578999999999999999999999999999998887776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.69  E-value=0.0065  Score=49.71  Aligned_cols=95  Identities=14%  Similarity=0.036  Sum_probs=56.2

Q ss_pred             CCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916           30 HFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMR-VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA  107 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~-~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~  107 (359)
                      +..|+.|+.+|.|.+|+.... .....+.....+|.++- --.++.+..+++.||.|+.|++.-.+.+.....|..    
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~----  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF----  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence            466888999999999998621 21112222223333332 223456888999999999999876655544444441    


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916          108 LAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus       108 i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                          -++..+++.+.|+.|.+|++.
T Consensus       146 ----~~~e~~ivv~sd~~i~~a~~S  166 (238)
T KOG2444|consen  146 ----ESGEELIVVGSDEFLKIADTS  166 (238)
T ss_pred             ----CCcceeEEecCCceEEeeccc
Confidence                234445555555556555543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.64  E-value=0.24  Score=46.03  Aligned_cols=108  Identities=18%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 041916           63 TDVMRVNPFNGVVSLG-HSGG----TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----------KI  126 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg-~~dg----~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----------~i  126 (359)
                      +..+.+||+|+++|.+ +..|    .|+++|+.+++.+....... ....++|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467889999988765 3334    59999999997654321111 123499999988876665332           47


Q ss_pred             EEEEcCCce----eeEeccC-C--ceeEEEcCCc--eE-EEEcC---CcEEEEcCCCC
Q 041916          127 KIWDLRKYE----VLQTLPG-H--AKTLDFSQKG--LL-AVGTG---SFVQILGDFSG  171 (359)
Q Consensus       127 ~iwd~~~~~----~~~~~~~-~--i~~~~~s~~g--l~-~~~~d---~~i~i~d~~~~  171 (359)
                      +.|.+.+..    ++..-.. .  ...+..++++  ++ .....   ..+.+.++...
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            888887653    3333322 2  4578889999  33 33332   45778876553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=96.63  E-value=0.074  Score=51.34  Aligned_cols=139  Identities=8%  Similarity=0.047  Sum_probs=72.0

Q ss_pred             CCCEEEEEecCC-----eEEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 041916           29 NHFLLASINKFG-----QLRYQDVTMGEIV--GNFRTGLGRTDVMRVNPFNGVVSLGHSGG-------------------   82 (359)
Q Consensus        29 ~~~~l~s~~~dg-----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-------------------   82 (359)
                      ++.+.+.||.++     ++..||..+..-.  ..+.........++  -+|.+.+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            567777787653     4888998765422  11111111111222  2577777777653                   


Q ss_pred             ----eEEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCC---ceeeEeccCC--ce
Q 041916           83 ----TVTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRK---YEVLQTLPGH--AK  145 (359)
Q Consensus        83 ----~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~---~~~~~~~~~~--i~  145 (359)
                          .|..||+.+.+  .+..+.........++  -+|...+.||.+      ..+..||..+   +..+..++.+  ..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence                47778877653  2222211111111222  246666666654      2467899886   3444444322  22


Q ss_pred             eEEEcCCc-eEEEEcCC--cEEEEcCCCC
Q 041916          146 TLDFSQKG-LLAVGTGS--FVQILGDFSG  171 (359)
Q Consensus       146 ~~~~s~~g-l~~~~~d~--~i~i~d~~~~  171 (359)
                      +++...+- +++||.++  .+..||..++
T Consensus       507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        507 HTILHDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             eeEEECCEEEEEeeecceeehhhcCcccc
Confidence            33333233 66667676  6777886654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.4  Score=41.18  Aligned_cols=149  Identities=12%  Similarity=0.152  Sum_probs=100.1

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI-   96 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~-   96 (359)
                      ..+.++.|+|+.+.|++..+...-.|+=..+|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.+.....+. 
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~  165 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS  165 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence            34589999999988888777777777777789988887631 2334567888888888877788888888766542221 


Q ss_pred             ------EEe--cc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-ee--Eec----------cCCceeEEEcCCc-
Q 041916           97 ------KML--CH-QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VL--QTL----------PGHAKTLDFSQKG-  153 (359)
Q Consensus        97 ------~~~--~h-~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~--~~~----------~~~i~~~~~s~~g-  153 (359)
                            .+.  .+ +.....++|+|..+.|+.+-.-.-+.||.+..+. .+  +..          -..++++.|++.. 
T Consensus       166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~  245 (316)
T COG3204         166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN  245 (316)
T ss_pred             ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence                  111  12 4457789999998888888877777777665332 11  110          1246788888654 


Q ss_pred             -eEEEEc-CCcEEEEc
Q 041916          154 -LLAVGT-GSFVQILG  167 (359)
Q Consensus       154 -l~~~~~-d~~i~i~d  167 (359)
                       +++.|. ++.+.-.|
T Consensus       246 ~LLVLS~ESr~l~Evd  261 (316)
T COG3204         246 SLLVLSDESRRLLEVD  261 (316)
T ss_pred             cEEEEecCCceEEEEe
Confidence             655554 45666666

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.60  E-value=0.1  Score=43.12  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             eccCCCe-EEEEEecCCCEEEEE-ecCCeEEEEE--CCCCe-----EEEEEec----CCCCeEEEEEcCCCCEEEEEeCC
Q 041916           15 LKEHGAV-LKLQFLRNHFLLASI-NKFGQLRYQD--VTMGE-----IVGNFRT----GLGRTDVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus        15 l~~h~~~-~~l~~s~~~~~l~s~-~~dg~i~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~sp~~~~l~sg~~d   81 (359)
                      +...-++ +.++|+.+.+.+... +.+-+|.-||  ..+|.     .+..++.    .....-.++...+|.+.++.-..
T Consensus       153 i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng  232 (310)
T KOG4499|consen  153 IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG  232 (310)
T ss_pred             eehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC
Confidence            3334455 889999888766544 5566787788  55654     2333332    11123345556678888888899


Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEE
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATS  120 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~  120 (359)
                      |+|...|+.+|+.+..+.-....|+|.+|-- +-..|++.
T Consensus       233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT  272 (310)
T ss_pred             cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence            9999999999999999988888999999953 33344443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.53  E-value=0.42  Score=40.64  Aligned_cols=186  Identities=12%  Similarity=0.065  Sum_probs=113.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE--
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM--   98 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~--   98 (359)
                      +..++-+|||..-+++...+.|--.|..+|+....--+.....+.+..-|||...++-+.. -|.-.|..+... ..|  
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~l  141 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPL  141 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeec
Confidence            3788889999888888888899999999998766555555667888889999877765444 455566655432 222  


Q ss_pred             --eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916           99 --LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus        99 --~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                        ..-........|++.|++.+++.. |.---.|... ..+..+    ......|+..|+|  .++.-.++.|-..|...
T Consensus       142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~  219 (353)
T COG4257         142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA  219 (353)
T ss_pred             ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence              223456788999999999888762 2111111111 123333    2346889999999  55555677888888666


Q ss_pred             CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          171 GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +...  .+..... ....-..+--+|.+..-++....+....+
T Consensus       220 ~~ae--v~p~P~~-~~~gsRriwsdpig~~wittwg~g~l~rf  259 (353)
T COG4257         220 GHAE--VVPQPNA-LKAGSRRIWSDPIGRAWITTWGTGSLHRF  259 (353)
T ss_pred             CCcc--eecCCCc-ccccccccccCccCcEEEeccCCceeeEe
Confidence            5221  1111110 01123444456677655554444433333

>PRK10115 protease 2; Provisional

Probab=96.51  E-value=1  Score=44.78  Aligned_cols=187  Identities=8%  Similarity=-0.011  Sum_probs=100.7

Q ss_pred             EEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCC
Q 041916           22 LKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPT   90 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~   90 (359)
                      ..+.++|||++|+.+..     ...|++.|+.+|..+...-....  ..++|++|+..|+.+..+      ..|..+++.
T Consensus       130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            66789999998876533     34689999988864322211211  459999998766655432      367888888


Q ss_pred             CC--cceEEEeccCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEEcC--CceeeEec--c-CCceeEEEcCCc-eEEEE
Q 041916           91 TA--APLIKMLCHQGPVS-ALAFHPNGHLMATSGK---ECKIKIWDLR--KYEVLQTL--P-GHAKTLDFSQKG-LLAVG  158 (359)
Q Consensus        91 ~~--~~~~~~~~h~~~v~-~i~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~--~-~~i~~~~~s~~g-l~~~~  158 (359)
                      ++  +-...+........ .+..+.++.+++..+.   ++.+.+|+..  .+.+...+  . +....+. +..+ ++..+
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~t  286 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRS  286 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEE
Confidence            77  33334443333333 3333448887655443   4578888853  33322222  2 2222222 2223 43333


Q ss_pred             c-C---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          159 T-G---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       159 ~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      . +   ..|...++... .....+..+.  ....|..+.++ ...++++...+|...+++.
T Consensus       287 n~~~~~~~l~~~~~~~~-~~~~~l~~~~--~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        287 NRHGKNFGLYRTRVRDE-QQWEELIPPR--ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             cCCCCCceEEEecCCCc-ccCeEEECCC--CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            2 2   23444443321 2233444442  23368888887 3345556666776666554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.47  E-value=0.16  Score=47.66  Aligned_cols=137  Identities=12%  Similarity=0.079  Sum_probs=77.8

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC----CCEEEEEeCCCeEEEEEcCC-
Q 041916           61 GRTDVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN----GHLMATSGKECKIKIWDLRK-  133 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~~~~~d~~i~iwd~~~-  133 (359)
                      .+++.++|....+.+++.-  .+|.+.+=|.   ..+    +.-..|..++|.|-    ..-+++......|.+|.+-. 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4789999964334444431  2333332221   122    23345889999983    33455555567899998852 


Q ss_pred             ----ceeeEe----ccC----CceeEEEcCCc-eEEEEcCCcE-EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          134 ----YEVLQT----LPG----HAKTLDFSQKG-LLAVGTGSFV-QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       134 ----~~~~~~----~~~----~i~~~~~s~~g-l~~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                          ++.+..    +..    -...+.|+|.. ++++-....+ .+++...+...+..-..-    .+.|.|.+|.+||+
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG~  168 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDGQ  168 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcCC
Confidence                222221    111    23678899998 6555444334 444544443333322222    23799999999999


Q ss_pred             EEEEEcCCC
Q 041916          200 VLGIGHSMG  208 (359)
Q Consensus       200 ~l~~~~~dg  208 (359)
                      .|+++-...
T Consensus       169 RLVVAvGSs  177 (671)
T PF15390_consen  169 RLVVAVGSS  177 (671)
T ss_pred             EEEEEeCCe
Confidence            888776554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.38  E-value=0.46  Score=43.36  Aligned_cols=140  Identities=14%  Similarity=0.049  Sum_probs=76.6

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Ccc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 041916           61 GRTDVMRVNPFNGVVSLGH-----------SGG-TVTMWKPTT--AAP--LIKMLCHQGPVSALAFHPNGHLMATSGKEC  124 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~-----------~dg-~v~lwd~~~--~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~  124 (359)
                      .....|+|.++|+++++-.           ..+ .|.+++-..  +..  ...+.......+.+++.++|  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999999877653           223 677776442  332  22333333446889999998  44444444


Q ss_pred             eEEEEEcCC-------cee-eEeccC-------CceeEEEcCCc-e-EEEEcC-------------------CcEEEEcC
Q 041916          125 KIKIWDLRK-------YEV-LQTLPG-------HAKTLDFSQKG-L-LAVGTG-------------------SFVQILGD  168 (359)
Q Consensus       125 ~i~iwd~~~-------~~~-~~~~~~-------~i~~~~~s~~g-l-~~~~~d-------------------~~i~i~d~  168 (359)
                      .+++.|...       .+. +..+..       ....++|.|+| | ++.+..                   +.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333445432       111 222311       25789999999 4 333311                   33444443


Q ss_pred             CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ..+  ....+. ..   ......++|+|+|+++++-..++
T Consensus       172 dg~--~~e~~a-~G---~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       172 DGG--KLRVVA-HG---FQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCC--eEEEEe-cC---cCCCccceECCCCCEEEEccCCC
Confidence            322  222222 11   11467899999998887755444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.34  E-value=0.39  Score=45.20  Aligned_cols=113  Identities=11%  Similarity=0.100  Sum_probs=71.0

Q ss_pred             CCeEEEEEecC----C-CEEEEEecCCeEEEEECC-----CCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCe
Q 041916           19 GAVLKLQFLRN----H-FLLASINKFGQLRYQDVT-----MGEIVGNFRTGLG-----RTDVMRVNPFNGVVSLGHSGGT   83 (359)
Q Consensus        19 ~~~~~l~~s~~----~-~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~sg~~dg~   83 (359)
                      ..+.+++|.|-    . .+||+ .....|.||-+.     +++.+.+-..+..     -...+.|+|....|++-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence            34588999984    2 45554 557799999985     2333333222211     1356789999888777655544


Q ss_pred             EEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcC
Q 041916           84 VTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKE-CKIKIWDLR  132 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d-~~i~iwd~~  132 (359)
                      -.++++.......... ...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus       136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            4456665443332222 456889999999999997765433 346788754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.25  Score=45.66  Aligned_cols=26  Identities=19%  Similarity=0.086  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      |..+..++.|..++..+.+|.+.++=
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEc
Confidence            45566788888888888888665543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.33  Score=44.17  Aligned_cols=137  Identities=7%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      +.+-|...++.|++. ..|.+.-|-+...   -++..-....|+|.+|.|++|.+.||+--.|.+|-+++....++...+
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            344454444444433 3344555544322   122222245679999999999999999999999999998544433222


Q ss_pred             -------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          141 -------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       141 -------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                             ...|....|+.+. ++... +.-+.+|........+.....|..    .|.-..|+++...+..++.
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekrslRlVks~~~----nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNL----NVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhhhhhhhhhccc----CccEEEEccccceEeeecc
Confidence                   3358899999887 44444 344566654444344555555554    6777888888876554443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.30  E-value=1  Score=43.24  Aligned_cols=168  Identities=17%  Similarity=0.197  Sum_probs=98.7

Q ss_pred             eEEEe-CCCcEEEEeccCCC--eE----------EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGA--VL----------KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMR   67 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~--~~----------~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~   67 (359)
                      |+-+| .+|+++-.+.....  ..          .+++  .+..++.++.|+.|.-+|..+|+.+......... -..+.
T Consensus        81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~t  158 (527)
T TIGR03075        81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTIT  158 (527)
T ss_pred             EEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccccccc
Confidence            44556 67777766543211  11          1122  2345677788999999999999998776532110 01111


Q ss_pred             EcC--CCCEEEEEe------CCCeEEEEeCCCCcceEEEeccCC-------------------------------Ce-EE
Q 041916           68 VNP--FNGVVSLGH------SGGTVTMWKPTTAAPLIKMLCHQG-------------------------------PV-SA  107 (359)
Q Consensus        68 ~sp--~~~~l~sg~------~dg~v~lwd~~~~~~~~~~~~h~~-------------------------------~v-~~  107 (359)
                      -+|  .+..+++++      .+|.|..+|..+|+.+..+..-..                               .+ ..
T Consensus       159 ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~  238 (527)
T TIGR03075       159 AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGT  238 (527)
T ss_pred             CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCc
Confidence            122  123444443      268999999999987766542110                               11 13


Q ss_pred             EEEcCCCCEEEEEeCC-----C-----------eEEEEEcCCceeeEecc---C---------CceeEEEcCCc-----e
Q 041916          108 LAFHPNGHLMATSGKE-----C-----------KIKIWDLRKYEVLQTLP---G---------HAKTLDFSQKG-----L  154 (359)
Q Consensus       108 i~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~---~---------~i~~~~~s~~g-----l  154 (359)
                      ++++|...+++.+..+     +           +|.-.|+.+|+..-.+.   .         ...-+.+..+|     +
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v  318 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL  318 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence            4677766677666522     2           67788999998876661   1         12223333454     4


Q ss_pred             EEEEcCCcEEEEcCCCC
Q 041916          155 LAVGTGSFVQILGDFSG  171 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~  171 (359)
                      +.++.+|.+++.|..++
T Consensus       319 ~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       319 AHADRNGFFYVLDRTNG  335 (527)
T ss_pred             EEeCCCceEEEEECCCC
Confidence            56677899999997776

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.25  E-value=0.83  Score=41.06  Aligned_cols=140  Identities=17%  Similarity=0.240  Sum_probs=78.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGTVTM-WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL  137 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~v~l-wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  137 (359)
                      .+.+.++.+.|++.++++| ..|.+.. +| ..++.-..+. .-...++++.+.|++..++++ ..|.+.+=....+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            3568889999988766555 4555442 22 1122122222 334578899999998876665 4576653223333221


Q ss_pred             Ee--cc-----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          138 QT--LP-----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       138 ~~--~~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      ..  .+     ..+.++.+.|++ +++++.+|.+..=. ..+ ........... ....++.+.|..++..+++|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~-d~G-~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSK-DGG-KTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeC-CCC-CCCeECCcCCC-CCcceEEEEEeCCCceEEECC
Confidence            11  11     246788999988 88888888665422 222 33333322111 112588888887776655443

>PRK13684 Ycf48-like protein; Provisional

Probab=96.23  E-value=0.79  Score=41.20  Aligned_cols=142  Identities=14%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      .++.+.|++.+++++. .|.+..-.-..++.-..+. .....++++.+.|++..+++| ..|.+.+=+.+.+..-.....
T Consensus       176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~  253 (334)
T PRK13684        176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII  253 (334)
T ss_pred             EEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC
Confidence            7888889887766654 5555432112222222222 234578999999999877765 457664323343332221111


Q ss_pred             ----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc---eeeE---eccCCceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916          101 ----HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY---EVLQ---TLPGHAKTLDFSQKG-LLAVGTGSFVQILG  167 (359)
Q Consensus       101 ----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~---~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d  167 (359)
                          ....+.++.+.|++..+++ +.+|.|.. -...+   +.+.   .++.....+.|..++ .++++..|.|--|+
T Consensus       254 ~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        254 PEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             CccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence                1234788999998775554 45675543 33333   3322   123346677776666 88888889988886

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.044  Score=54.83  Aligned_cols=140  Identities=7%  Similarity=-0.035  Sum_probs=90.0

Q ss_pred             EEeccCCCe--EEEEEecCCCEEEE--EecCCeEEEEECCCCeEE-----EEEec------CCCCeEEEEEcCCC-CEEE
Q 041916           13 HCLKEHGAV--LKLQFLRNHFLLAS--INKFGQLRYQDVTMGEIV-----GNFRT------GLGRTDVMRVNPFN-GVVS   76 (359)
Q Consensus        13 ~~l~~h~~~--~~l~~s~~~~~l~s--~~~dg~i~iwd~~~~~~~-----~~~~~------~~~~v~~~~~sp~~-~~l~   76 (359)
                      .++.-|..+  ..+..++|+...++  .+++-.|..||+.+-..-     .-+..      ......++.|+|.- ...+
T Consensus        93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a  172 (1405)
T KOG3630|consen   93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA  172 (1405)
T ss_pred             cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence            455556664  66677777655433  344558899998753211     11111      22346688999864 3456


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cCCceeEEE
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PGHAKTLDF  149 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~  149 (359)
                      ....|+.|.+..+........--.-...+++++|+|.|..++.|-..|++.-|-..- +....+       ...|.+|+|
T Consensus       173 v~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             hhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEE
Confidence            677899998887664433222112344679999999999999999999999886543 222222       356899999


Q ss_pred             cCCc
Q 041916          150 SQKG  153 (359)
Q Consensus       150 s~~g  153 (359)
                      -...
T Consensus       252 l~t~  255 (1405)
T KOG3630|consen  252 LSTQ  255 (1405)
T ss_pred             ecce
Confidence            7766

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=96.05  E-value=0.38  Score=45.51  Aligned_cols=134  Identities=15%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC---eEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR---TDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s   77 (359)
                      ++++|.+|.....+...... ..+.+.++|.+++..+  ..+..+|+. |+.+..+....+.   -+.+..-|+|++|+.
T Consensus       130 ~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l  206 (477)
T PF05935_consen  130 TYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLIL  206 (477)
T ss_dssp             EEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred             EEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEE
Confidence            57888889888777654443 3377889998887655  789999985 7777666544322   467888899998887


Q ss_pred             Ee--------------CCCeEEEEeCCCCcceEEEe--ccC-------------------------CCeEEEEEcC-CCC
Q 041916           78 GH--------------SGGTVTMWKPTTAAPLIKML--CHQ-------------------------GPVSALAFHP-NGH  115 (359)
Q Consensus        78 g~--------------~dg~v~lwd~~~~~~~~~~~--~h~-------------------------~~v~~i~~~~-~~~  115 (359)
                      +.              .|. |..+| .+|+.+..+.  .|-                         --++++.+.+ ++.
T Consensus       207 ~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~  284 (477)
T PF05935_consen  207 ASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDS  284 (477)
T ss_dssp             EEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTE
T ss_pred             EeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCe
Confidence            77              222 44445 5555444432  110                         1368899998 444


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEec
Q 041916          116 LMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus       116 ~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      +|+++-.-..|...|.++++....+
T Consensus       285 iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  285 IIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             EEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             EEEEcCcceEEEEEECCCCcEEEEe
Confidence            4554444558999998888877666

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.85  E-value=0.21  Score=46.03  Aligned_cols=142  Identities=16%  Similarity=0.199  Sum_probs=90.9

Q ss_pred             EecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCcceEE
Q 041916           26 FLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-------VVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        26 ~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      ...+..+|+ .|+.-..++-.|+..|+.+..+..|..-  .+.|.|+..       .-++|-.+..|.-.|++.......
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            334445544 4555667888899999999999988654  678888642       233466677777778775432111


Q ss_pred             EeccCCCeEEEEEcC----CCCEEEEEeCCCeEEEEEcCCc---eeeEeccCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916           98 MLCHQGPVSALAFHP----NGHLMATSGKECKIKIWDLRKY---EVLQTLPGHAKTLDFSQKG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~----~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~  169 (359)
                      .......++--.|+.    .+.++|++|..|-|++||--.-   ..+..+...|..+..+.+| .+.+....+|-+.|+.
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            112223333333332    4458999999999999996432   3344445578899999999 5555556777777753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.81  E-value=0.21  Score=48.25  Aligned_cols=139  Identities=14%  Similarity=0.113  Sum_probs=76.0

Q ss_pred             CCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCc-
Q 041916           29 NHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAA-   93 (359)
Q Consensus        29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~-   93 (359)
                      .+.+++.||.+      ..+..||..++.-..  .+... ..-.+++.. ++.+.++|+.|      .++..||+.+.+ 
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            45677777776      467889988774322  22211 123344443 45788888888      357788887654 


Q ss_pred             -ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCce--eeEeccCCceeEEE-cCCc--eEEEEcC--
Q 041916           94 -PLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKYE--VLQTLPGHAKTLDF-SQKG--LLAVGTG--  160 (359)
Q Consensus        94 -~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~--~~~~~~~~i~~~~~-s~~g--l~~~~~d--  160 (359)
                       .+..+...........  -+|.+.++||.||     +|-.||..+.+  .+..+......... .-+|  ++++|.+  
T Consensus       362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence             2222222222222222  2677888898886     47778877643  33333222222222 2234  4455533  


Q ss_pred             ----CcEEEEcCCCC
Q 041916          161 ----SFVQILGDFSG  171 (359)
Q Consensus       161 ----~~i~i~d~~~~  171 (359)
                          ..+..||..++
T Consensus       440 ~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  440 SNCLNSVECYDPETN  454 (571)
T ss_pred             ccccceEEEEcCCCC
Confidence                46788887665

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.73  E-value=0.47  Score=46.99  Aligned_cols=86  Identities=13%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Ccc---eEEE--------eccCCCeEEEEEcCC---CCEEE
Q 041916           62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTT---------AAP---LIKM--------LCHQGPVSALAFHPN---GHLMA  118 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~---------~~~---~~~~--------~~h~~~v~~i~~~~~---~~~l~  118 (359)
                      .|..+..||+|.+++..|..|.+.+.=++.         +..   ..++        ..+...|..+.|+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            477889999999999888877544432221         111   1111        123457889999995   57888


Q ss_pred             EEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc
Q 041916          119 TSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG  153 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g  153 (359)
                      +-+.|+++++||+....      .+...+.+++..
T Consensus       166 vLtsdn~lR~y~~~~~~------~p~~v~~~~~~~  194 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ------HPWQVLSLSPGE  194 (717)
T ss_pred             EEecCCEEEEEecCCCC------CCeEEEEcccCc
Confidence            88999999999995422      344555666544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=95.70  E-value=0.84  Score=44.01  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=52.4

Q ss_pred             cCCCEEEEEecCC------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcc
Q 041916           28 RNHFLLASINKFG------QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAP   94 (359)
Q Consensus        28 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~   94 (359)
                      .++.+++.||.++      .+..||..++.....  +.........+.  -++.+++.|+.+     ..+..||+.+.+-
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3456666776532      577888877654221  111111122222  256777778765     3477888776531


Q ss_pred             e--EEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCce
Q 041916           95 L--IKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRKYE  135 (359)
Q Consensus        95 ~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~~~  135 (359)
                      .  ..+...... .+++ .-++...+.||.+      ..+..||+.+.+
T Consensus       371 ~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        371 REEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            1  111111111 1222 2256666666632      468889987644

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.67  E-value=2.7  Score=42.18  Aligned_cols=216  Identities=12%  Similarity=0.080  Sum_probs=126.1

Q ss_pred             eEEEe-CCCcEEEEec--cCCCe---EEEEEecC-CCEEEEEec----------CCeEEEEECCCCeEEEEEecC--CCC
Q 041916            2 PYIYN-RDGTELHCLK--EHGAV---LKLQFLRN-HFLLASINK----------FGQLRYQDVTMGEIVGNFRTG--LGR   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~--~h~~~---~~l~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~   62 (359)
                      ++++| ++-+.++..+  ....+   .++.|..| +.++++|..          .|.|.+|.+..++.+..+..+  .+.
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga  831 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA  831 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence            67788 5555543322  22223   33447666 667777653          478888887764444443332  234


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeE--
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQ--  138 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~--  138 (359)
                      |.++..- +|+++|  +-+..|++|+..+.+.++.-..+..++..+...-.|..+++|..-+++.+.-.+..+  ..-  
T Consensus       832 v~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA  908 (1096)
T KOG1897|consen  832 VYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA  908 (1096)
T ss_pred             eeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence            4444321 345554  456789999998886666555777888889888899999999877777766554422  221  


Q ss_pred             -ec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCC------ccce---eeccc----CCCCcceEE--EEEeeCCCE
Q 041916          139 -TL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSH------NYSR---YMGHS----MVKGYQIGK--VSFRPYEDV  200 (359)
Q Consensus       139 -~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~------~~~~---~~~~~----~~~~~~v~~--~~~~p~~~~  200 (359)
                       .+ +...+++.+-.+. ++.+..+|.+.+....+...      ....   +.-+.    ..++.-|..  -.-+|.+.-
T Consensus       909 rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~  988 (1096)
T KOG1897|consen  909 RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPK  988 (1096)
T ss_pred             hhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCc
Confidence             12 4466777777666 55555667777664332110      1111   11000    001222332  133455667


Q ss_pred             EEEEcCCCeEEEEEcCCCCC
Q 041916          201 LGIGHSMGWSSILVPGSGEP  220 (359)
Q Consensus       201 l~~~~~dg~~~i~~~~~~d~  220 (359)
                      +..|+.+|.+-++.+...|.
T Consensus       989 vlfgTv~GsIG~i~sl~~d~ 1008 (1096)
T KOG1897|consen  989 VLFGTVNGSIGIIVSLPQDW 1008 (1096)
T ss_pred             EEEEEccceEEEEEecCcch
Confidence            89999999998888766443

>PHA03098 kelch-like protein; Provisional

Probab=95.60  E-value=0.93  Score=43.69  Aligned_cols=103  Identities=9%  Similarity=-0.044  Sum_probs=51.3

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcc-
Q 041916           29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAAP-   94 (359)
Q Consensus        29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~~-   94 (359)
                      ++.+++.||.+     ..+..||..++.-..  .+...... .+++ .-++.+++.|+.+      ..+..||+.+.+- 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            56777777764     357788887654221  11111111 1222 2356667777632      3588889876431 


Q ss_pred             -eEEEeccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCce
Q 041916           95 -LIKMLCHQGPVSALAFHPNGHLMATSGKE--------CKIKIWDLRKYE  135 (359)
Q Consensus        95 -~~~~~~h~~~v~~i~~~~~~~~l~~~~~d--------~~i~iwd~~~~~  135 (359)
                       +..+....... +++ ..++..++.||.+        ..+.+||..+.+
T Consensus       420 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        420 KGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             ecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence             11111111111 222 2255566666542        238889987654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.57  E-value=1.9  Score=39.58  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=80.3

Q ss_pred             EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEEEEEeC------------
Q 041916           22 LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGL---GRTDVMRVNPFNGVVSLGHS------------   80 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~sg~~------------   80 (359)
                      ..+...|+|..++|+-.      -|-+.++|-.+.+.........   ..-..+.|.|..+.++|...            
T Consensus       133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred             ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence            55666788988887522      3678899988888877776532   23456788998888888642            


Q ss_pred             --------CCeEEEEeCCCCcceEEEeccC-C-CeEEEEEc--CCCCE-EEEEeCCCeEEEEEc-CCce----eeEec--
Q 041916           81 --------GGTVTMWKPTTAAPLIKMLCHQ-G-PVSALAFH--PNGHL-MATSGKECKIKIWDL-RKYE----VLQTL--  140 (359)
Q Consensus        81 --------dg~v~lwd~~~~~~~~~~~~h~-~-~v~~i~~~--~~~~~-l~~~~~d~~i~iwd~-~~~~----~~~~~--  140 (359)
                              ..++.+||+.+.+.++++.-.. + ....|.|.  |+..+ ++.+....+|..|-- ..+.    .+..+  
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                    3579999999999999987432 2 24556664  55555 444444556665533 2221    12121  


Q ss_pred             ------------------cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc
Q 041916          141 ------------------PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHN  174 (359)
Q Consensus       141 ------------------~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~  174 (359)
                                        ++-|+.|.+|.|.  |++++ ..|.|+.||+.....+
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence                              2336899999988  55555 5799999997664333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=95.47  E-value=1.3  Score=39.05  Aligned_cols=131  Identities=8%  Similarity=0.117  Sum_probs=89.6

Q ss_pred             eEEEeCCCcEEEEeccCC-------------CeEEEEEecCCCEEEEEe------------------cCCeEEEEECCCC
Q 041916            2 PYIYNRDGTELHCLKEHG-------------AVLKLQFLRNHFLLASIN------------------KFGQLRYQDVTMG   50 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~-------------~~~~l~~s~~~~~l~s~~------------------~dg~i~iwd~~~~   50 (359)
                      +.+.|.+.+++..+....             +...+.+.++|..|++.-                  .|+.+.-.|+.||
T Consensus        27 ~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~Tg  106 (299)
T PF14269_consen   27 YVILDSSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETG  106 (299)
T ss_pred             EEEECCCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCC
Confidence            456777788887777665             236677788888877321                  2566777788888


Q ss_pred             eEEEEEec--CC-------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC
Q 041916           51 EIVGNFRT--GL-------------------------GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG  103 (359)
Q Consensus        51 ~~~~~~~~--~~-------------------------~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~  103 (359)
                      +.+..+..  |-                         --+++|...++|.+|+|.-.-.+|.+.|..+++.+..+.+..+
T Consensus       107 evlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~  186 (299)
T PF14269_consen  107 EVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN  186 (299)
T ss_pred             CEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC
Confidence            87776531  10                         0256777778889999888888899999999988888765422


Q ss_pred             -C----eEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916          104 -P----VSALAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus       104 -~----v~~i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                       .    -...+|-.+-+++-.+..++.|.++|=.
T Consensus       187 ~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  187 SDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             CcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence             1    1124444455566556778899999863

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.45  E-value=3.2  Score=41.62  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCeE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-------------VMRVNP--FNGVVSLGHS----------GGTV   84 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~sg~~----------dg~v   84 (359)
                      +..++.++.|+.|.-.|..+|+.+..+... +.|.             .+.-+|  .+..+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            347788888999999999999988776421 1111             111122  1345666643          6889


Q ss_pred             EEEeCCCCcceEEEecc---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCeEEE
Q 041916           85 TMWKPTTAAPLIKMLCH---------QG--------PV-SALAFHPNGHLMATSG------------------KECKIKI  128 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h---------~~--------~v-~~i~~~~~~~~l~~~~------------------~d~~i~i  128 (359)
                      +-+|+.+|+.+..+..-         .+        .+ ..++++|...+++.+.                  ..++|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            99999999988776521         00        11 2345555544544432                  1346777


Q ss_pred             EEcCCceeeEeccC------------CceeEEEcC-Cc-----eEEEEcCCcEEEEcCCCC
Q 041916          129 WDLRKYEVLQTLPG------------HAKTLDFSQ-KG-----LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       129 wd~~~~~~~~~~~~------------~i~~~~~s~-~g-----l~~~~~d~~i~i~d~~~~  171 (359)
                      .|+.+|+..-.+..            ...-+.+.. +|     ++.++.+|.++++|..++
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            78888887665521            122222322 44     556677899999997776

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.36  E-value=0.023  Score=46.56  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLG--HSGGTVTMWKPT   90 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg--~~dg~v~lwd~~   90 (359)
                      +.+.-..++.+.++++.||.|+.|++..++.+.....|. .++..+..+..+..++++  |.|..++.|++.
T Consensus       106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            333334456788999999999999999988888777777 555555555555666666  666666777654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.34  E-value=2.2  Score=39.29  Aligned_cols=137  Identities=9%  Similarity=0.006  Sum_probs=78.1

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCeEE-EEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----ceE
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA-----PLI   96 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~-----~~~   96 (359)
                      +..++++.+++.+..-..++-||  .|... ..+ ......+..+.|.+++.+++++ .+|.+ +|....+.     ...
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~  319 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFE  319 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccccee
Confidence            44556766666654333333344  23221 111 1233568899999999888766 55654 34444443     222


Q ss_pred             EEecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeE---eccCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916           97 KMLCH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQ---TLPGHAKTLDFSQKG-LLAVGTGSFVQIL  166 (359)
Q Consensus        97 ~~~~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~---~~~~~i~~~~~s~~g-l~~~~~d~~i~i~  166 (359)
                      .....  ...+.++.|.+++..+++| ..|.+.... ..++   ...   .+..+...+.|.+++ .++.+.+|.|.-|
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            22211  2348899999887766554 567666553 2232   222   224567899988766 8888888887665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.29  E-value=0.096  Score=30.82  Aligned_cols=31  Identities=29%  Similarity=0.486  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 041916          103 GPVSALAFHPNG---HLMATSGKECKIKIWDLRK  133 (359)
Q Consensus       103 ~~v~~i~~~~~~---~~l~~~~~d~~i~iwd~~~  133 (359)
                      +.|+++.|+|.+   .+|+.+-.-+.|.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            467889999744   4777777778899999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=95.24  E-value=0.77  Score=43.56  Aligned_cols=136  Identities=10%  Similarity=-0.048  Sum_probs=67.0

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCc--ceEE
Q 041916           29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG--GTVTMWKPTTAA--PLIK   97 (359)
Q Consensus        29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d--g~v~lwd~~~~~--~~~~   97 (359)
                      ++.++++||.+     ..+..||..++....  .+....... +++ .-++.+.+.|+.+  ..+..||+.+.+  .+..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            45566777754     357788887765322  111111111 222 2356777777754  357888876542  1112


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeE--eccCCc--eeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQ--TLPGHA--KTLDFSQKG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~--~~~~~i--~~~~~s~~g-l~~~~~d~~i~i~d~~  169 (359)
                      +.........++  -+|...+.||.++   .+..||.++..-..  .++.+.  .+++ .-+| +++.|  |.+.+||..
T Consensus       349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G--G~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG--RNAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC--CceEEecCC
Confidence            211111111222  3566777777543   47788887644322  222111  1222 2344 55544  457788865


Q ss_pred             CC
Q 041916          170 SG  171 (359)
Q Consensus       170 ~~  171 (359)
                      ++
T Consensus       424 ~~  425 (480)
T PHA02790        424 SN  425 (480)
T ss_pred             CC
Confidence            54

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.21  E-value=3.7  Score=40.87  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCC----------CeE---EEEE--------ecCCCCeEEEEEcCCC---CEEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTM----------GEI---VGNF--------RTGLGRTDVMRVNPFN---GVVS   76 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~---~~~~--------~~~~~~v~~~~~sp~~---~~l~   76 (359)
                      +..+.++|+|.+||..|..|. .|..+..          |+.   .+++        ..+...|..+.|+|.+   ..|+
T Consensus        87 v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            367788999999998887654 4444321          111   1111        1234578899999974   7888


Q ss_pred             EEeCCCeEEEEeCCCCc
Q 041916           77 LGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~   93 (359)
                      +-..|+++++||+....
T Consensus       166 vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEecCCEEEEEecCCCC
Confidence            99999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.21  E-value=0.68  Score=46.27  Aligned_cols=110  Identities=14%  Similarity=0.077  Sum_probs=74.3

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR--------TDVMRVNP----------------FNGVVSLGHSGGTVT   85 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~sp----------------~~~~l~sg~~dg~v~   85 (359)
                      +..|+.++.++.|.-.|..+|+.+..+......        +..+++..                .+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777888899999999999999887643211        22233321                234788889999999


Q ss_pred             EEeCCCCcceEEEeccCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEEcCCceeeEec
Q 041916           86 MWKPTTAAPLIKMLCHQGPV-------------SALAFHP--NGHLMATSGK----------ECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v-------------~~i~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~  140 (359)
                      -.|..+|+.+..+.. .+.|             ..+.-.|  .+..+++|+.          +|.|+-+|+.+|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876532 2221             1122223  2345666642          688999999999988766

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.14  E-value=1  Score=34.01  Aligned_cols=100  Identities=14%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCc--------ceEEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcC
Q 041916           66 MRVNPFNGVVSLGHSGGTVTMWKPTTAA--------PLIKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus        66 ~~~sp~~~~l~sg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~  132 (359)
                      -.|......|++++.-|.|.|.++....        .+..+. -...|++|+-.|     +...|+.|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            3455555678888899999999876432        233332 345677776554     2345666664 679999998


Q ss_pred             CceeeE--eccCCceeEEEcC-----CceEEEEcCCcEEEEc
Q 041916          133 KYEVLQ--TLPGHAKTLDFSQ-----KGLLAVGTGSFVQILG  167 (359)
Q Consensus       133 ~~~~~~--~~~~~i~~~~~s~-----~gl~~~~~d~~i~i~d  167 (359)
                      ...-+.  .++..+.++.+-.     ..++.+|.+..|.-||
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd  123 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD  123 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence            765433  3366677776632     2266666666777777

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=1.5  Score=35.83  Aligned_cols=111  Identities=15%  Similarity=0.187  Sum_probs=66.6

Q ss_pred             EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           22 LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      ..+.+. +|.++.+.+.  ...|++||+.+|+.+.+-.-....+..=-...-+ ...+..-.+|.-..+|.++.+.+..+
T Consensus        49 QGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          49 QGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             cceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence            455555 3466666654  4579999999998876654331111110001112 23334557888899999888877665


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV  136 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~  136 (359)
                      . ..+.=+.++-  |+..|..+....++..-|..+...
T Consensus       128 ~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~  162 (262)
T COG3823         128 S-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAE  162 (262)
T ss_pred             c-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhh
Confidence            4 3444455553  555576666667788778766443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.02  E-value=0.11  Score=30.64  Aligned_cols=32  Identities=13%  Similarity=0.273  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q 041916           61 GRTDVMRVNPFN---GVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        61 ~~v~~~~~sp~~---~~l~sg~~dg~v~lwd~~~~   92 (359)
                      +.|.++.|||.+   .+|+.+-.-|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.90  E-value=1.9  Score=36.84  Aligned_cols=97  Identities=18%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-Ee
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QT  139 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~  139 (359)
                      +....++-.|||...+++...|.|--.|..+++....-.+.-..-..|...|||...++-+.. .|.-.|-.+.... ..
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            345678889999999999999999999999997655443434445678889999877765544 5666676554321 12


Q ss_pred             c-----cCCceeEEEcCCc--eEEEE
Q 041916          140 L-----PGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       140 ~-----~~~i~~~~~s~~g--l~~~~  158 (359)
                      +     .+......|.+.|  .+++.
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q  166 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQ  166 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeec
Confidence            2     3456888999999  44443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.73  E-value=0.55  Score=43.16  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=61.4

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-EEEEEc-CCC---------------C
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT-DVMRVN-PFN---------------G   73 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s-p~~---------------~   73 (359)
                      ...|...... .+++.+|++.+.|+...-|.|.++|+.++..++.+++..+.= .-+... +..               .
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3455555555 899999999999988888999999999998888887654321 111110 100               1


Q ss_pred             --EEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           74 --VVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        74 --~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                        +++-+-.-|.|.||+++++..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence              233456788999999998877766553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.59  E-value=2.3  Score=35.46  Aligned_cols=129  Identities=17%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 041916           61 GRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT-SGKECKIKIWD  130 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~-~~~d~~i~iwd  130 (359)
                      ...+.-..+|+|++++-.-.         .|.++.|-+. + .+..+...-+--+.++|+.+.+.++. -+.+-+|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            34556667899988443222         2445555432 1 12222222333467999988777654 45667887787


Q ss_pred             --cCCce-----eeEecc------C-CceeEEEcCCc-e-EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916          131 --LRKYE-----VLQTLP------G-HAKTLDFSQKG-L-LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF  194 (359)
Q Consensus       131 --~~~~~-----~~~~~~------~-~i~~~~~s~~g-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  194 (359)
                        ..+|.     .+..+.      . ....+++..+| + +++-..++|.-.|+.++ +.+..+.-...    .|++++|
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~----qitsccF  261 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTP----QITSCCF  261 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCC----ceEEEEe
Confidence              55543     233331      1 13556666677 4 44556789999998887 44444433332    7999999


Q ss_pred             ee
Q 041916          195 RP  196 (359)
Q Consensus       195 ~p  196 (359)
                      --
T Consensus       262 gG  263 (310)
T KOG4499|consen  262 GG  263 (310)
T ss_pred             cC
Confidence            64

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.53  E-value=3.5  Score=37.32  Aligned_cols=198  Identities=9%  Similarity=-0.010  Sum_probs=97.5

Q ss_pred             eEEEeCCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN--PFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s   77 (359)
                      +++.|....++..|..+.+.  ....++|+.+.++-......|.-.|+.+.+....+......+....|.  .++..++-
T Consensus        62 ly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g  141 (386)
T PF14583_consen   62 LYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVG  141 (386)
T ss_dssp             EEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEE
T ss_pred             eEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEE
Confidence            35566444455556654432  567778888887666566789999999988766666666666556664  45555443


Q ss_pred             Ee---C-------------------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeC---CC-eEEEEE
Q 041916           78 GH---S-------------------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGK---EC-KIKIWD  130 (359)
Q Consensus        78 g~---~-------------------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~---d~-~i~iwd  130 (359)
                      .-   .                   ...|.-.|+.+|+....+. -...+.-+.|+| |..+|+.|-.   +. .-+||-
T Consensus       142 ~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~  220 (386)
T PF14583_consen  142 IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWT  220 (386)
T ss_dssp             EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEE
T ss_pred             EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEE
Confidence            21   1                   1345666788776544443 345677899999 5555666643   22 135565


Q ss_pred             cCC-ceeeEec----cC-CceeEEEcCCc--eEE-EE-c---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          131 LRK-YEVLQTL----PG-HAKTLDFSQKG--LLA-VG-T---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       131 ~~~-~~~~~~~----~~-~i~~~~~s~~g--l~~-~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      +++ +.....+    ++ .+..=-|+|+|  +.- .. .   +..|.-+|+.++... ......      ....+--+++
T Consensus       221 i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~D  293 (386)
T PF14583_consen  221 INTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPD  293 (386)
T ss_dssp             EETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TT
T ss_pred             EEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCC
Confidence            543 2222222    11 34556699999  222 22 2   335777777766322 111111      3445556788


Q ss_pred             CCEEEEEcCC
Q 041916          198 EDVLGIGHSM  207 (359)
Q Consensus       198 ~~~l~~~~~d  207 (359)
                      |++++--+.|
T Consensus       294 g~L~vGDG~d  303 (386)
T PF14583_consen  294 GKLFVGDGGD  303 (386)
T ss_dssp             SSEEEEEE--
T ss_pred             CCEEEecCCC
Confidence            8877654444

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.51  E-value=1.4  Score=39.65  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=55.7

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEEEe----cCCCCeEEEEEcCC----CCEEEEEeCC-------
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGNFR----TGLGRTDVMRVNPF----NGVVSLGHSG-------   81 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~~~~sp~----~~~l~sg~~d-------   81 (359)
                      .+++|+|.|||.+|++ ...|.|++++ ..+..   +..+.    ........++++|+    +.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3589999999987775 5699999999 44543   22221    23456789999995    3333333311       


Q ss_pred             -CeEEEEeCCCC-------cceE-EEec---cCCCeEEEEEcCCCCEEEEEeC
Q 041916           82 -GTVTMWKPTTA-------APLI-KMLC---HQGPVSALAFHPNGHLMATSGK  122 (359)
Q Consensus        82 -g~v~lwd~~~~-------~~~~-~~~~---h~~~v~~i~~~~~~~~l~~~~~  122 (359)
                       ..|.-|.....       +.+. .+..   ....-..|+|.|||.+.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             23444444332       1111 1122   2234567999999976666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.50  E-value=2.3  Score=35.05  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEE---e
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMW---K   88 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lw---d   88 (359)
                      .+..++-++.+.+|++ .....|.+|++.+  ...+..|..- +.|..+.++..|.+|++-=.+      ..+++|   .
T Consensus        19 EP~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence            4444444443344443 4567899999983  3456667654 789999999999999985322      255665   2


Q ss_pred             CC--CCcceE-EEecc---------------------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc
Q 041916           89 PT--TAAPLI-KMLCH---------------------QGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        89 ~~--~~~~~~-~~~~h---------------------~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      ..  ...++. .+-+|                     +.++.+++..| .|++ +.|+ ++++.+|.+...
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEE
Confidence            11  112222 11122                     33567788877 4554 4444 357888877653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=4.4  Score=39.57  Aligned_cols=164  Identities=15%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--E--eccCCCeEEEEEcCCCC
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK--M--LCHQGPVSALAFHPNGH  115 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~--~--~~h~~~v~~i~~~~~~~  115 (359)
                      -.|+||++. |..+..+.-..+.+-.+.|+.+.. |++-..||++++|++-. ..+..  +  ......|....|..+|-
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            468899974 777777665556888999998765 55567999999999752 22222  1  12222344444444554


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeccC------CceeEEEcCCc-----eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916          116 LMATSGKECKIKIWDLRKYEVLQTLPG------HAKTLDFSQKG-----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV  184 (359)
Q Consensus       116 ~l~~~~~d~~i~iwd~~~~~~~~~~~~------~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  184 (359)
                      .+++.  +|.+.+-+-........++.      +.+|....+++     ++.....--..++....+......+..    
T Consensus       141 avlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~----  214 (829)
T KOG2280|consen  141 AVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW----  214 (829)
T ss_pred             EEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC----
Confidence            44443  34454433222212223311      11333333332     222211101111211111111111111    


Q ss_pred             CCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          185 KGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       185 ~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      +.+.+..+..||+.++|+.-+..|.+.+
T Consensus       215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~  242 (829)
T KOG2280|consen  215 PNSSVVKISVSPNRRFLALYTETGKIWV  242 (829)
T ss_pred             CCceEEEEEEcCCcceEEEEecCCcEEE
Confidence            1136888999999999999888885544

>PHA02790 Kelch-like protein; Provisional

Probab=94.09  E-value=3.8  Score=38.90  Aligned_cols=101  Identities=10%  Similarity=-0.068  Sum_probs=49.5

Q ss_pred             cCCCEEEEEecC--CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcce--EEE
Q 041916           28 RNHFLLASINKF--GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGG---TVTMWKPTTAAPL--IKM   98 (359)
Q Consensus        28 ~~~~~l~s~~~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg---~v~lwd~~~~~~~--~~~   98 (359)
                      -++.+.+.||.+  .++..||..++.-..  .+....... +++ .-+|.+.+.|+.++   .+..||+.+..-.  ..+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            366677777753  457888876553221  111111111 122 23567777777653   4778888754311  111


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                      .........++  -+|...+.|   |.+.+||..+.+
T Consensus       395 ~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~  426 (480)
T PHA02790        395 YYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNT  426 (480)
T ss_pred             CCccccceEEE--ECCEEEEEC---CceEEecCCCCc
Confidence            11111111222  245445555   356788887643

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.96  E-value=0.46  Score=39.80  Aligned_cols=59  Identities=10%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------c----------CCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916          110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------P----------GHAKTLDFSQKG-LLAVGTGSFVQILGD  168 (359)
Q Consensus       110 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~----------~~i~~~~~s~~g-l~~~~~d~~i~i~d~  168 (359)
                      +..+++++++.+.+|.+++||+.+++.+..-       .          ..|..+.++.+| .++.-.+|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence            4457889999999999999999987754322       1          235667777777 222333566777773

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.89  E-value=0.0052  Score=55.74  Aligned_cols=130  Identities=12%  Similarity=0.139  Sum_probs=88.1

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV-VSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      ....|-|.+.-++.++.+..|..||-. |+...... ..+....|+|.-++.. ++.+...+.+.+||+++......-.+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g  115 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG  115 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence            566788877668888888899999954 55444433 3455677888887754 44566788999999986432111111


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG  153 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g  153 (359)
                      ....-.-+.|++.+..++.+...+.+.+|+.++.+.+...   ...+++++|.+.+
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence            1222223789998888999988999999998876544333   2356788887776

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.88  E-value=1  Score=41.49  Aligned_cols=46  Identities=9%  Similarity=0.050  Sum_probs=38.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCC
Q 041916           59 GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGP  104 (359)
Q Consensus        59 ~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~  104 (359)
                      ..-.+.+++.+|++.+.|+...=|.|.|+|+.++..++.+++..+.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            3345788999999999998888899999999999888888776653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.70  E-value=0.69  Score=38.73  Aligned_cols=29  Identities=24%  Similarity=0.167  Sum_probs=24.1

Q ss_pred             EecCCCEEEEEecCCeEEEEECCCCeEEE
Q 041916           26 FLRNHFLLASINKFGQLRYQDVTMGEIVG   54 (359)
Q Consensus        26 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~   54 (359)
                      +..++.+|++.+.+|.+++||+.+++.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            45578889999999999999999887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.67  E-value=5.7  Score=36.58  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----ee
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-----VL  137 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~  137 (359)
                      ...+..++++.+++.|.....++-||.....-...-......++++.|.+++..++++ .+|.+.. ....+.     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            3445667887777766554433445432110011111234568899999999887665 4565443 222232     12


Q ss_pred             Eecc-----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          138 QTLP-----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       138 ~~~~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      ....     ..+.++.|.+++ +++++..|.+.... ..+ +.......-.. -...++.+.|.++++.+++|.
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G-~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~G~  389 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG-KSWKRDKGADN-IAANLYSVKFFDDKKGFVLGN  389 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC-cceeEccccCC-CCcceeEEEEcCCCceEEEeC
Confidence            2221     247889999888 88899889877764 233 33332221111 123688999988776655543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.57  E-value=0.45  Score=38.24  Aligned_cols=28  Identities=14%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             CCceeEEEcCCc--------eEEEEcCCcEEEEcCC
Q 041916          142 GHAKTLDFSQKG--------LLAVGTGSFVQILGDF  169 (359)
Q Consensus       142 ~~i~~~~~s~~g--------l~~~~~d~~i~i~d~~  169 (359)
                      ..+..++|||.|        |++.+.++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            478999999976        5556788999999743

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.57  E-value=4.7  Score=35.32  Aligned_cols=159  Identities=10%  Similarity=0.084  Sum_probs=85.7

Q ss_pred             CeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCC-----CEE-EEEeCCCeEEEEeCCCCcceEEEec-------
Q 041916           40 GQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFN-----GVV-SLGHSGGTVTMWKPTTAAPLIKMLC-------  100 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~-----~~l-~sg~~dg~v~lwd~~~~~~~~~~~~-------  100 (359)
                      -.|.+||+.+++.++.+.-+      .+.++.+.+....     .++ ++=+..+-|.|+|+.+++.-+.+..       
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            37899999999988887632      3456777776522     233 3333446799999988754333221       


Q ss_pred             ------------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCC-----ce---------eeEec---cCCceeEE
Q 041916          101 ------------HQGPVSALAFHP---NGHLMATSGKECKIKIWDLRK-----YE---------VLQTL---PGHAKTLD  148 (359)
Q Consensus       101 ------------h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~-----~~---------~~~~~---~~~i~~~~  148 (359)
                                  ..+.+..++.+|   +|++|+.+...+ -.+|-+.+     ..         .+..+   .+....++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                        123366777766   667777766543 23333321     10         11222   23567888


Q ss_pred             EcCCc-eE-EEEcCCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEee--CCCE
Q 041916          149 FSQKG-LL-AVGTGSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRP--YEDV  200 (359)
Q Consensus       149 ~s~~g-l~-~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p--~~~~  200 (359)
                      ++++| ++ +--..+.|..|+......  ....+... ...-..+.++.+.+  +|.+
T Consensus       193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-PRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--CC-GSSEEEEEE-T--TS-E
T ss_pred             ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-CceeeccceeeeccccCceE
Confidence            99999 44 444678999999654211  11222211 10123677888888  6643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.54  E-value=0.073  Score=52.13  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             CCeEEEEECC--CCeEEEEEe-----cCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEE
Q 041916           39 FGQLRYQDVT--MGEIVGNFR-----TGLGRTDVMRVNP---FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSAL  108 (359)
Q Consensus        39 dg~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~sp---~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i  108 (359)
                      -|.+.|||++  .|+....+.     .....+.-+.|.|   +..++..+-.+|.|.+...+.... ..+.+|...+..+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence            3678899986  344332222     2223445555655   456777788889988877654322 2234566555544


Q ss_pred             E-----------EcCCCCEEEEEeCCCeEEEEEc
Q 041916          109 A-----------FHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus       109 ~-----------~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                      +           .+|||..+++++.||.++.|.+
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            4           4667777777777776666654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.44  E-value=5.5  Score=35.66  Aligned_cols=145  Identities=16%  Similarity=0.193  Sum_probs=83.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCe------EEEEeCCC--C--cceE-----EEeccCC--------CeEEEEEcCCCCE
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGT------VTMWKPTT--A--APLI-----KMLCHQG--------PVSALAFHPNGHL  116 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~------v~lwd~~~--~--~~~~-----~~~~h~~--------~v~~i~~~~~~~~  116 (359)
                      -+.+..+.+.|++..+++.+++|.      +..+++..  +  ..+.     .+....+        ..-+|++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356778888876666666777777      66555443  1  1111     1111111        3347888788888


Q ss_pred             EEEEeCC------CeEEEEEcCCceeeEec------------------cCCceeEEEcCCc--eEEEEc-----CC--c-
Q 041916          117 MATSGKE------CKIKIWDLRKYEVLQTL------------------PGHAKTLDFSQKG--LLAVGT-----GS--F-  162 (359)
Q Consensus       117 l~~~~~d------~~i~iwd~~~~~~~~~~------------------~~~i~~~~~s~~g--l~~~~~-----d~--~-  162 (359)
                      +++.-.+      ..|..+|.. |.....+                  ....-+|+++|+|  ++++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8887777      789888876 5443332                  1235789999998  555432     22  1 


Q ss_pred             ------EEE--EcCCCCCCcccee--ecccC---CCCcceEEEEEeeCCCEEEEEc
Q 041916          163 ------VQI--LGDFSGSHNYSRY--MGHSM---VKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       163 ------i~i--~d~~~~~~~~~~~--~~~~~---~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                            +++  ||..+.......+  .....   .....|..+.+.+++++|+.--
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence                  444  4544322222222  11100   0234789999999999777643

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.36  E-value=1.7  Score=40.33  Aligned_cols=123  Identities=10%  Similarity=0.058  Sum_probs=75.1

Q ss_pred             CCCcEEEEeccCCCeEEEEEecCC--------CEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEc----CCCC
Q 041916            7 RDGTELHCLKEHGAVLKLQFLRNH--------FLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVN----PFNG   73 (359)
Q Consensus         7 ~~g~~~~~l~~h~~~~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s----p~~~   73 (359)
                      ..|+.+-....|..+ -+.|.|+.        +.|+ |-.+..|.-.|.+- |..+.... ....++--.||    ..+.
T Consensus       498 ErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesG  574 (776)
T COG5167         498 ERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESG  574 (776)
T ss_pred             ccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeee-ehhccccccccccccccCc
Confidence            556677777777776 66777753        2343 44455666666653 33222222 11122222222    2346


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                      ++|+||..|-|++||--.-..-..+.+....|-.|..+.+|.++++.|. ..+-+-|++-
T Consensus       575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i  633 (776)
T COG5167         575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI  633 (776)
T ss_pred             eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence            8999999999999994322223334455667889999999999777665 5788888753

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.35  E-value=9.5  Score=38.86  Aligned_cols=167  Identities=15%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             eEEEEECCCCeEEEEEecCCC----CeEEEEEcCCCC--EEEEEe-----------CCCeEEEEeCC-CCcceEEEe--c
Q 041916           41 QLRYQDVTMGEIVGNFRTGLG----RTDVMRVNPFNG--VVSLGH-----------SGGTVTMWKPT-TAAPLIKML--C  100 (359)
Q Consensus        41 ~i~iwd~~~~~~~~~~~~~~~----~v~~~~~sp~~~--~l~sg~-----------~dg~v~lwd~~-~~~~~~~~~--~  100 (359)
                      .|+++|..+++.+..+.-..+    .+..+.|+....  ++++|.           .+|.++.|++- .+..+.-+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            588899888876665553222    355666665433  344432           24556666643 333222221  1


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcc
Q 041916          101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNY  175 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~  175 (359)
                      -.++|.  +..|-..++++| ....+++||+...++++..     +..|+.+++.-..++++...-.+.++-.......+
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence            234443  445755555554 4468999999887665544     45677887777666666654444444333433455


Q ss_pred             ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ..+...+. +. .|+++.+- |...++.|..-|.+.++
T Consensus      1011 ~~fadD~~-pR-~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1011 IVFADDPV-PR-HVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred             EEEeCCCc-cc-eeeEEEEe-cCCceeeccccCcEEEE
Confidence            55554432 11 35555544 44556666555544443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.12  E-value=9.3  Score=37.72  Aligned_cols=137  Identities=15%  Similarity=0.152  Sum_probs=82.6

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEE------EEEec----------------CCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIV------GNFRT----------------GLGRTDVMRVNP--FNGVVSLGHSGGTVT   85 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~----------------~~~~v~~~~~sp--~~~~l~sg~~dg~v~   85 (359)
                      .++|+++. .+.|.||+++.-..+      ..+..                ....|+.|...-  ....|+.+.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666654 679999998642211      11100                011244444332  235788999999999


Q ss_pred             EEeCCC-------C-------------cceEEEeccCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCCc--ee--e--
Q 041916           86 MWKPTT-------A-------------APLIKMLCHQGPVSALAFH--PNGHLMATSGKECKIKIWDLRKY--EV--L--  137 (359)
Q Consensus        86 lwd~~~-------~-------------~~~~~~~~h~~~v~~i~~~--~~~~~l~~~~~d~~i~iwd~~~~--~~--~--  137 (359)
                      +|.+.+       .             +|...+. -...+++++++  ...++||+++....|.||-....  +.  .  
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996421       0             1222222 23468999998  78888999888888888755432  11  1  


Q ss_pred             EeccCCceeEEEcCC-----c---eEEEEcCCcEEEEcC
Q 041916          138 QTLPGHAKTLDFSQK-----G---LLAVGTGSFVQILGD  168 (359)
Q Consensus       138 ~~~~~~i~~~~~s~~-----g---l~~~~~d~~i~i~d~  168 (359)
                      ......|.+|+|-++     |   +++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            112456889998664     3   345566788888775

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.11  E-value=2  Score=40.08  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=14.5

Q ss_pred             EEEEecCCCEEEEEecCCeEEEEE
Q 041916           23 KLQFLRNHFLLASINKFGQLRYQD   46 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~~dg~i~iwd   46 (359)
                      .+..++.|..++-+|.+|.+.++=
T Consensus       108 ~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  108 QVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEecCCCceEEEecCCeeEEEEc
Confidence            344566677777777676554443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.05  E-value=11  Score=38.11  Aligned_cols=152  Identities=11%  Similarity=0.052  Sum_probs=83.6

Q ss_pred             EeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCC------CEEEEEeCCCeEE
Q 041916           14 CLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFN------GVVSLGHSGGTVT   85 (359)
Q Consensus        14 ~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~------~~l~sg~~dg~v~   85 (359)
                      ......+.+....+.+...++.++.++.+.+.++..+. +....  .-...|.|+.++|-|      .+++.|..+..+.
T Consensus       483 ~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~  561 (1096)
T KOG1897|consen  483 EWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM  561 (1096)
T ss_pred             cccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence            33344444444444455566777777888888887665 22222  224578999999853      2788888776655


Q ss_pred             EEeC-CCCcceEEE-ec---cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cceee--E--ec-cCCceeEEEcCCc
Q 041916           86 MWKP-TTAAPLIKM-LC---HQGPVSALAFHPNGHLMATSGKECKIKIWDLR--KYEVL--Q--TL-PGHAKTLDFSQKG  153 (359)
Q Consensus        86 lwd~-~~~~~~~~~-~~---h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~--~--~~-~~~i~~~~~s~~g  153 (359)
                      +.-. .+...+... ..   -+..|.-..|-.|..+|+++..||.+..|-+.  ++..-  +  .+ ..|+.--.|+..+
T Consensus       562 ~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~  641 (1096)
T KOG1897|consen  562 ILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKS  641 (1096)
T ss_pred             EEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCC
Confidence            4432 222222111 11   12234445555678999999999998877554  43321  1  22 3355555555544


Q ss_pred             --eEEEEcCCcEEEE
Q 041916          154 --LLAVGTGSFVQIL  166 (359)
Q Consensus       154 --l~~~~~d~~i~i~  166 (359)
                        .+.+.+|.-..+|
T Consensus       642 ~t~vfa~sdrP~viY  656 (1096)
T KOG1897|consen  642 RTAVFALSDRPTVIY  656 (1096)
T ss_pred             ceEEEEeCCCCEEEE
Confidence              3333344433444

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.03  E-value=5.3  Score=37.92  Aligned_cols=137  Identities=14%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             CCEEEEE---ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCC--
Q 041916           30 HFLLASI---NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGP--  104 (359)
Q Consensus        30 ~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~--  104 (359)
                      +-++++.   ...+...++|.. |.....+.........+...++|.+++..+  ..+..+|+. |+.+..+....+.  
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~  190 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD  190 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred             cEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence            3455555   345677888864 777666654333222266778888877555  678888875 5555544322211  


Q ss_pred             -eEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCceeeEec----------c-------------------
Q 041916          105 -VSALAFHPNGHLMATSGK-------------ECKIKIWDLRKYEVLQTL----------P-------------------  141 (359)
Q Consensus       105 -v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~~~~~----------~-------------------  141 (359)
                       =.++...|+|++|+.+..             .-.|..+| .+|+.+..+          .                   
T Consensus       191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D  269 (477)
T PF05935_consen  191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD  269 (477)
T ss_dssp             B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred             cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence             245777899999887771             11344455 555444332          0                   


Q ss_pred             -CCceeEEEcC-Cc-eEEEEcC-CcEEEEcCCCC
Q 041916          142 -GHAKTLDFSQ-KG-LLAVGTG-SFVQILGDFSG  171 (359)
Q Consensus       142 -~~i~~~~~s~-~g-l~~~~~d-~~i~i~d~~~~  171 (359)
                       -+++++.+.+ ++ +++.+.. +.|...|..++
T Consensus       270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             ccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence             1568899988 44 6666543 57777774443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.96  E-value=0.79  Score=36.80  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 041916          103 GPVSALAFHPNG------HLMATSGKECKIKIWDLRK  133 (359)
Q Consensus       103 ~~v~~i~~~~~~------~~l~~~~~d~~i~iwd~~~  133 (359)
                      ..|.+++|||.|      -+|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999933      3588889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.90  E-value=1.7  Score=42.63  Aligned_cols=102  Identities=9%  Similarity=0.062  Sum_probs=69.9

Q ss_pred             CCCEEEEEecCCeEEEEECCC-------C-------------eEEEEEecCCCCeEEEEEc--CCCCEEEEEeCCCeEEE
Q 041916           29 NHFLLASINKFGQLRYQDVTM-------G-------------EIVGNFRTGLGRTDVMRVN--PFNGVVSLGHSGGTVTM   86 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--p~~~~l~sg~~dg~v~l   86 (359)
                      +...|+.|..||.|.+|.+.+       .             ++...+. -...+++++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            346788999999999997631       0             0111222 23478899998  77789999999999998


Q ss_pred             EeCCCC--c-ceEEEeccCCCeEEEEEcCC-----CC-EEEEEeCCCeEEEEEc
Q 041916           87 WKPTTA--A-PLIKMLCHQGPVSALAFHPN-----GH-LMATSGKECKIKIWDL  131 (359)
Q Consensus        87 wd~~~~--~-~~~~~~~h~~~v~~i~~~~~-----~~-~l~~~~~d~~i~iwd~  131 (359)
                      |-....  + ....-..|...|.+|+|-++     |. ++++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            865431  1 11111135567889999763     32 6788889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.82  E-value=8.4  Score=36.08  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEe-----ccCCCeEEEEEcCCC
Q 041916           55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--LIKML-----CHQGPVSALAFHPNG  114 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~-----~h~~~v~~i~~~~~~  114 (359)
                      .+.......+.|+|.|+|.+|++--..|.|++++..++..  +..+.     ...+....|+++|+-
T Consensus        24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3444456678999999998777655469999998655432  11111     135667899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.37  E-value=9.7  Score=35.68  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             EEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEE----e-cCCCCeEEEEEcCCC------CEEEE
Q 041916           12 LHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNF----R-TGLGRTDVMRVNPFN------GVVSL   77 (359)
Q Consensus        12 ~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~-~~~~~v~~~~~sp~~------~~l~s   77 (359)
                      +..+.. -..++.|+|.||+.+|++--..|.|++++..++..  +..+    . ...+....|+++|+-      .+|+.
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv  101 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI  101 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence            333443 34459999999998887765469999998665432  2111    1 135678899999874      23333


Q ss_pred             Ee----------CCCeEEEEeCCCC--c---ceEEEe------ccCCCeEEEEEcCCCCEEEEEeCC
Q 041916           78 GH----------SGGTVTMWKPTTA--A---PLIKML------CHQGPVSALAFHPNGHLMATSGKE  123 (359)
Q Consensus        78 g~----------~dg~v~lwd~~~~--~---~~~~~~------~h~~~v~~i~~~~~~~~l~~~~~d  123 (359)
                      ..          ....|.-|.+...  .   ....+.      .|.+  ..|+|.|||.++++.+..
T Consensus       102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence            32          1233544554321  1   111121      2333  468899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.36  E-value=6.1  Score=36.06  Aligned_cols=109  Identities=6%  Similarity=-0.042  Sum_probs=68.3

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC-Ce
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL--GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-PV  105 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-~v  105 (359)
                      ++. ++.+..+|.|.-.|..++..+.....-.  ..+.+-.+..+|. |+.++.+|.+..+|..+++.+........ .+
T Consensus        68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            444 4445778899999999888765443321  2223323333554 77788999999999988988887765441 11


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916          106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      ....+-.++ .++.++.++.+...|..++.....+
T Consensus       146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence            111111233 3444447788999998888876664

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.28  E-value=4.4  Score=34.44  Aligned_cols=136  Identities=19%  Similarity=0.228  Sum_probs=75.2

Q ss_pred             EEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEec---CCeEEEEECCC--CeEEE-EEe---cCCCCeEEEEEcC
Q 041916            3 YIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINK---FGQLRYQDVTM--GEIVG-NFR---TGLGRTDVMRVNP   70 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~---dg~i~iwd~~~--~~~~~-~~~---~~~~~v~~~~~sp   70 (359)
                      .+|| .+++ +.-+.-..+.  .+-+|.|||.+|.+|+.   ...+++++..+  +.+-. ...   ...-.-.+..--|
T Consensus        49 ~~yD~~tn~-~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNT-FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCc-EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            3677 4443 3344444444  45578899999999875   24578888654  11110 000   1112233444567


Q ss_pred             CCCEEEEEeCCC-eEEEEeCCCC-cceEEE--ec------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           71 FNGVVSLGHSGG-TVTMWKPTTA-APLIKM--LC------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        71 ~~~~l~sg~~dg-~v~lwd~~~~-~~~~~~--~~------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      ||+.|+.|+.+. +..+|..... .....+  ..      ...---.+...|+|++++.+..+  -.+||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            899988888764 3455543221 111111  11      01112246667999999888765  455688887777776


Q ss_pred             c
Q 041916          141 P  141 (359)
Q Consensus       141 ~  141 (359)
                      +
T Consensus       206 P  206 (243)
T PF07250_consen  206 P  206 (243)
T ss_pred             C
Confidence            3

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.99  E-value=15  Score=37.17  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             CCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC----cc-eEEEeccCCC----------eEEEEEcCCCCEEEEEeCCC
Q 041916           61 GRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTA----AP-LIKMLCHQGP----------VSALAFHPNGHLMATSGKEC  124 (359)
Q Consensus        61 ~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~----~~-~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~d~  124 (359)
                      .+...++|+|.. ..||.....|...||++...    .. ......+.+.          -..|.|.++.+.|++++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            467889999954 68999999999999999211    11 1111112222          347889888888888876 5


Q ss_pred             eEEEEEcCCceeeEec-----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCC
Q 041916          125 KIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       125 ~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~  170 (359)
                      .+.++|+.+......+     ...|..+.-+|..   ++.. ....|...+...
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence            7899999986543312     2467888888873   3333 345666666554

These proteins are found in fungi.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.97  E-value=0.017  Score=52.51  Aligned_cols=118  Identities=16%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             EEeCCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC
Q 041916            4 IYNRDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus         4 iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~d   81 (359)
                      .||..|+....+........++|.-++..+ +.+-..+.+.+||+.+... .++. +....-.-+.|++.+..++.|...
T Consensus        60 ~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~  138 (615)
T KOG2247|consen   60 YYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNA  138 (615)
T ss_pred             hhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccc
Confidence            344444444333333334677887776544 4455678999999976432 1221 111122237899988889999999


Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE  123 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d  123 (359)
                      |.+.+++..+...+..+-.|...+++++|.+.+.. +.++.|
T Consensus       139 gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd  179 (615)
T KOG2247|consen  139 GNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCD  179 (615)
T ss_pred             cceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcH
Confidence            99999998877666555458889999999987643 334333

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.74  E-value=1.4  Score=25.42  Aligned_cols=40  Identities=15%  Similarity=0.139  Sum_probs=28.0

Q ss_pred             cCCCEEEEEe-cCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 041916           28 RNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV   68 (359)
Q Consensus        28 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~   68 (359)
                      |+++.|+++. .+++|.++|..++..+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5676665544 5789999999999888888764 33345544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.73  E-value=0.53  Score=45.55  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEeccCCceeEEEcCCceEEEEcCCcEEEEc
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTLPGHAKTLDFSQKGLLAVGTGSFVQILG  167 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d  167 (359)
                      .+++|.-+|.|..+++++.||+|++|+.-....  +.+...+...+.|...|++++.+|..+.-|.
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK   81 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence            467788889999999999999999999865443  3333556778889999999988888888886

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.67  E-value=0.82  Score=44.23  Aligned_cols=71  Identities=14%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CCCCEEEEEeCCCeEEEEeCCC----CcceEEE--ec--------------------cCCCeEEEEEcC----CCCEEEE
Q 041916           70 PFNGVVSLGHSGGTVTMWKPTT----AAPLIKM--LC--------------------HQGPVSALAFHP----NGHLMAT  119 (359)
Q Consensus        70 p~~~~l~sg~~dg~v~lwd~~~----~~~~~~~--~~--------------------h~~~v~~i~~~~----~~~~l~~  119 (359)
                      ++...++.+..||.+.......    +......  ..                    ..+.+.++++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3567788888999888877653    1111110  00                    123456666766    7789999


Q ss_pred             EeCCCeEEEEEcCCceeeEec
Q 041916          120 SGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus       120 ~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      .+.|+++++||+.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.51  E-value=11  Score=34.76  Aligned_cols=144  Identities=10%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             CCCcEEEEeccCCC-------eEEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            7 RDGTELHCLKEHGA-------VLKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         7 ~~g~~~~~l~~h~~-------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      .+|..-+.+..|..       .+.+-|....+.|+ +-..|.+.=|-+....   ++..-....++|.++.||+|++.||
T Consensus         4 gsGalyhelihhPslfcnipesngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA   82 (657)
T KOG2377|consen    4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA   82 (657)
T ss_pred             CCcceEEEEecCchhhccCCcccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence            34566666666653       14555544333332 3334555556554322   2222224567999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC----ceeeEeccCCceeEE
Q 041916           77 LGHSGGTVTMWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK----YEVLQTLPGHAKTLD  148 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~i~~~~  148 (359)
                      +--.+.+|.+++....++..    +-+.....|....|+.+ .-+|..+..| +-+|-+..    -+.+.+....|.=..
T Consensus        83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~  160 (657)
T KOG2377|consen   83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYM  160 (657)
T ss_pred             EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEE
Confidence            99999999999874322221    12233445888899765 4455555444 55554432    222333344455555


Q ss_pred             EcCCc
Q 041916          149 FSQKG  153 (359)
Q Consensus       149 ~s~~g  153 (359)
                      |.++.
T Consensus       161 yc~et  165 (657)
T KOG2377|consen  161 YCPET  165 (657)
T ss_pred             Ecccc
Confidence            66655

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.48  E-value=1.3  Score=25.62  Aligned_cols=38  Identities=16%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916          112 PNGHLMATSG-KECKIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus       112 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      |++++|+++. .+++|.++|..++..+..+  ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            5777776655 5789999999888877766  223455554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.41  E-value=9.2  Score=33.44  Aligned_cols=108  Identities=13%  Similarity=0.173  Sum_probs=68.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcc-eEEEec-----cCCCeEEEEEcCCCC------------EE
Q 041916           62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPT------TAAP-LIKMLC-----HQGPVSALAFHPNGH------------LM  117 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~------~~~~-~~~~~~-----h~~~v~~i~~~~~~~------------~l  117 (359)
                      ..+.|+++|.+.+.++....+...+||..      ..++ +.++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999999988888999999986      2222 233331     234567888875322            36


Q ss_pred             EEEeCCCeEEEEEcCCce-----eeEec----cCCc-eeEEEcCC--c--eEEEE-cCCcEEEEcCC
Q 041916          118 ATSGKECKIKIWDLRKYE-----VLQTL----PGHA-KTLDFSQK--G--LLAVG-TGSFVQILGDF  169 (359)
Q Consensus       118 ~~~~~d~~i~iwd~~~~~-----~~~~~----~~~i-~~~~~s~~--g--l~~~~-~d~~i~i~d~~  169 (359)
                      +.+++||+|.-|...-..     ....+    .+.+ ..+++-..  +  |+++. ..++|.+||-.
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            778899999999853221     11222    1233 44555543  3  55555 46899999843

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.38  E-value=10  Score=33.93  Aligned_cols=136  Identities=14%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             eEEEEEecCCCEEEEEecCCe------EEEEECCC--C--eEE-----EEEecCCC--------CeEEEEEcCCCCEEEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQ------LRYQDVTM--G--EIV-----GNFRTGLG--------RTDVMRVNPFNGVVSL   77 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~~~~sp~~~~l~s   77 (359)
                      ...|.+.|++..+++.+.+|.      +..+++..  +  ..+     ..+....+        ..-+|++.++|.++++
T Consensus        22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is  101 (326)
T PF13449_consen   22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWIS  101 (326)
T ss_pred             EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEE
Confidence            388999976656666677777      66666543  1  111     11222222        2337888778888887


Q ss_pred             EeCC------CeEEEEeCCCCcceEEEe---------------ccCCCeEEEEEcCCCCEEEEEeC-----CC-------
Q 041916           78 GHSG------GTVTMWKPTTAAPLIKML---------------CHQGPVSALAFHPNGHLMATSGK-----EC-------  124 (359)
Q Consensus        78 g~~d------g~v~lwd~~~~~~~~~~~---------------~h~~~v~~i~~~~~~~~l~~~~~-----d~-------  124 (359)
                      .-.+      ..|..++.. |.....+.               ..+....+|+++|+|+.|+++.+     |+       
T Consensus       102 ~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~  180 (326)
T PF13449_consen  102 SEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDN  180 (326)
T ss_pred             eCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccccc
Confidence            6666      778888866 55443331               12345789999999997766643     22       


Q ss_pred             ----eEEEEEcCC-ceeeEec----c--------CCceeEEEcCCc-eEEE
Q 041916          125 ----KIKIWDLRK-YEVLQTL----P--------GHAKTLDFSQKG-LLAV  157 (359)
Q Consensus       125 ----~i~iwd~~~-~~~~~~~----~--------~~i~~~~~s~~g-l~~~  157 (359)
                          .|..||..+ +.+...+    .        ..++.+.+-+++ +++.
T Consensus       181 ~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  181 GSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                244455554 3333332    2        246888888888 6554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.06  E-value=4.7  Score=35.13  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCcceEEEec-----cCCCeEEE
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH------SGGTVTMWKPTTAAPLIKMLC-----HQGPVSAL  108 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~------~dg~v~lwd~~~~~~~~~~~~-----h~~~v~~i  108 (359)
                      ..|++||..+.+-...-.+-.+.|+.|.|..+..++++|.      ....+-.||+.+..- ..+..     -+++|+.+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4699999887654443344557899999987777777764      355688888876532 22222     24788888


Q ss_pred             EEcC-CCC-EEEEEe---CCCeEEEEEcCCceeeEe
Q 041916          109 AFHP-NGH-LMATSG---KECKIKIWDLRKYEVLQT  139 (359)
Q Consensus       109 ~~~~-~~~-~l~~~~---~d~~i~iwd~~~~~~~~~  139 (359)
                      .+.. |+. +.+.|.   .+..|..||=..+..+..
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~  130 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS  130 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence            8753 443 333333   234688888777666554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.14  E-value=3.2  Score=43.01  Aligned_cols=129  Identities=11%  Similarity=0.205  Sum_probs=78.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEE--------EEecCCCEEEEEecCCeEEEEECCCCe-------EE--EEEecCCCC
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKL--------QFLRNHFLLASINKFGQLRYQDVTMGE-------IV--GNFRTGLGR   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l--------~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~--~~~~~~~~~   62 (359)
                      +++|+ .++.....+.+-... ..+        .|-|.=++|+..+.--.|.++-+.-.+       ..  ..+......
T Consensus       101 L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~  180 (1311)
T KOG1900|consen  101 LFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVS  180 (1311)
T ss_pred             EEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCce
Confidence            68999 777777777664442 222        222332344444444566666553211       11  122233456


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeC----CCC---c-----------------ceEEEe-ccCCCeEEEEEcCCCCEE
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWKP----TTA---A-----------------PLIKML-CHQGPVSALAFHPNGHLM  117 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd~----~~~---~-----------------~~~~~~-~h~~~v~~i~~~~~~~~l  117 (359)
                      |+|+....+|+.+++| .||  .+|.+    ..+   +                 .+..+. .+.++|..|++...-..+
T Consensus       181 V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il  257 (1311)
T KOG1900|consen  181 VNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL  257 (1311)
T ss_pred             EEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence            8899977788777765 555  45543    111   0                 011222 457799999999888899


Q ss_pred             EEEeCCCeEEEEEcCC
Q 041916          118 ATSGKECKIKIWDLRK  133 (359)
Q Consensus       118 ~~~~~d~~i~iwd~~~  133 (359)
                      ++-+..++|.+||+..
T Consensus       258 Y~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  258 YVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeccCceEEEEEccC
Confidence            9999999999999976

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.04  E-value=7.5  Score=34.89  Aligned_cols=50  Identities=14%  Similarity=0.236  Sum_probs=33.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEE----eccCCCeEEEEEcCC
Q 041916           62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKM----LCHQGPVSALAFHPN  113 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~----~~h~~~v~~i~~~~~  113 (359)
                      ..+.|+|.|+|.++++ ...|.|.+++ ..+..   +..+    .........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            4678999999987765 5699999999 33432   2222    123456789999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.91  E-value=16  Score=33.82  Aligned_cols=130  Identities=12%  Similarity=0.212  Sum_probs=75.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcc-----eEEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCC--ce-----
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAP-----LIKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLRK--YE-----  135 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~-----~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~--~~-----  135 (359)
                      ..|++||..|.++||++.....     +... --..+|..|..-+     +...||+- .-..+.+|.+..  +.     
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence            5899999999999999865431     1111 2346777777643     23345543 446788887732  11     


Q ss_pred             -----eeE--eccCCceeEEEcCCc-------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          136 -----VLQ--TLPGHAKTLDFSQKG-------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       136 -----~~~--~~~~~i~~~~~s~~g-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                           .+.  .++.....+++-|-|       +.+-+.||.+.+|+- .. .....+...-.    -...++|+|.-+.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq-e~-~~f~~~lp~~l----lPgPl~Y~~~tDsf  189 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ-ES-FAFSRFLPDFL----LPGPLCYCPRTDSF  189 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC-Cc-EEEEEEcCCCC----CCcCeEEeecCCEE
Confidence                 111  113334455544422       666788999999983 22 12222222211    23346788888888


Q ss_pred             EEEcCCCeE
Q 041916          202 GIGHSMGWS  210 (359)
Q Consensus       202 ~~~~~dg~~  210 (359)
                      ++++++..+
T Consensus       190 vt~sss~~l  198 (418)
T PF14727_consen  190 VTASSSWTL  198 (418)
T ss_pred             EEecCceeE
Confidence            888877543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.77  E-value=7.3  Score=29.55  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcC---C--CCEEEEEeCCCeEEEEeCC
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGE--------IVGNFRTGLGRTDVMRVNP---F--NGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~sp---~--~~~l~sg~~dg~v~lwd~~   90 (359)
                      -.|...+.-|+.++..|.|.|++.....        .+..+. -...|++++--+   +  ...|+.|+.. .+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence            3455556678888888999999876432        333443 335677776544   2  3467766654 68999988


Q ss_pred             CCcceEEEeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           91 TAAPLIKMLCHQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      ...-+.. ..-++.|+++.+-.   ...-++..+.+..|.-||....+...+
T Consensus        82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             cCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            6654332 22346688887743   122355555567888888765554433

>PRK13614 lipoprotein LpqB; Provisional

Probab=89.56  E-value=21  Score=34.61  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=76.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 041916           62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIWDLR-KYEV--  136 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iwd~~-~~~~--  136 (359)
                      .+..++.++++..++....++. .+|-...+.....+.. ...++.-+|+++| .+-+.-.+.  .|..+.-. ++..  
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~-g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTS-GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeec-CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence            5778899999999888877773 3332222333322221 2246778888887 555544433  44443321 1111  


Q ss_pred             --eEe-----ccC-CceeEEEcCCc---eEEEEcCCc--EEEEcCCC--CCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          137 --LQT-----LPG-HAKTLDFSQKG---LLAVGTGSF--VQILGDFS--GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       137 --~~~-----~~~-~i~~~~~s~~g---l~~~~~d~~--i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                        +..     +.+ .|+.+.+|+||   .+....+|.  |+|--+..  .+.+..............+.++.|..++.++
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~  500 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVV  500 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEE
Confidence              111     134 49999999999   333434554  66543222  1121111111111122378999999998877


Q ss_pred             EEEcC
Q 041916          202 GIGHS  206 (359)
Q Consensus       202 ~~~~~  206 (359)
                      +.+..
T Consensus       501 V~~~~  505 (573)
T PRK13614        501 VTKAS  505 (573)
T ss_pred             EEecc
Confidence            66543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.36  E-value=10  Score=37.58  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCEEEEEeCCC-----eEEEEEcCC---ceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCc
Q 041916          106 SALAFHPNGHLMATSGKEC-----KIKIWDLRK---YEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHN  174 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~---~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~  174 (359)
                      ..++|-|+|..+++-+.||     .|.++....   |..-...  ...+..++|+-.. +++++..+.|.+|-..+-   
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy---  326 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY---  326 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce---
Confidence            4589999999999987655     355554322   2221111  2345777887776 777788899999963221   


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCE
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~  200 (359)
                       .-|..... .-..+.-+.|+|....
T Consensus       327 -hWYLK~e~-~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         327 -HWYLKVER-QIPGISYVKWHPEEKN  350 (1243)
T ss_pred             -EEEEEEee-cCCCcceeeeccccCc
Confidence             22211111 1114566788887653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.11  E-value=28  Score=35.37  Aligned_cols=136  Identities=15%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             cCCCCeEEEEEc---CC----CCEEEEEeCCCeEEEEeCCC---------------CcceEEEecc---CCCeEEEEEcC
Q 041916           58 TGLGRTDVMRVN---PF----NGVVSLGHSGGTVTMWKPTT---------------AAPLIKMLCH---QGPVSALAFHP  112 (359)
Q Consensus        58 ~~~~~v~~~~~s---p~----~~~l~sg~~dg~v~lwd~~~---------------~~~~~~~~~h---~~~v~~i~~~~  112 (359)
                      ....+|..|+|.   ..    ..+|++ -....+.|+.+.-               ..++..+..+   ..+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788889887   21    234444 3445566776211               1234444321   23567899999


Q ss_pred             -CCCEEEEEeCCCeEEEEEcCCc--------eeeEeccCCc----------eeEEEcCCc-eEEEEcCCcEEEEcCCCCC
Q 041916          113 -NGHLMATSGKECKIKIWDLRKY--------EVLQTLPGHA----------KTLDFSQKG-LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       113 -~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~i----------~~~~~s~~g-l~~~~~d~~i~i~d~~~~~  172 (359)
                       +...||+....|...|||+...        .......+.+          ..+.|.++. .+.++....+.++|+.+..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence             5567999999999999999211        1111112222          367787775 5555556788999977653


Q ss_pred             CccceeecccCCCCcceEEEEEeeC
Q 041916          173 HNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      ........  . ....|.++.-+|.
T Consensus       236 ~~~~l~~~--~-~~~~IlDv~~~~~  257 (765)
T PF10214_consen  236 QTEYLVTA--K-TWSWILDVKRSPD  257 (765)
T ss_pred             ccchhccC--C-ChhheeeEEecCC
Confidence            31111111  1 2336777777776

These proteins are found in fungi.

>PRK13615 lipoprotein LpqB; Provisional

Probab=88.87  E-value=23  Score=34.19  Aligned_cols=138  Identities=9%  Similarity=0.040  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceeeEe-c-
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQT-L-  140 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-~-  140 (359)
                      .+++.++++..++....++.+.++... +.....+.  ...++.-+|+++| .+-+.-.+...++..... +..... . 
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~  412 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS  412 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence            678999999998888878888887655 22222222  2346777888887 555544433444444332 333211 1 


Q ss_pred             ---cCCceeEEEcCCc--eEEE-E--cCCcEEEEcCCC-CCCccce-eecccC-CCCcceEEEEEeeCCCEEEEEc
Q 041916          141 ---PGHAKTLDFSQKG--LLAV-G--TGSFVQILGDFS-GSHNYSR-YMGHSM-VKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       141 ---~~~i~~~~~s~~g--l~~~-~--~d~~i~i~d~~~-~~~~~~~-~~~~~~-~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                         .+.|+.+..|+||  ++.. .  ..++|.+--+.. +..+... ...... .....+.++.|..++.+++.+.
T Consensus       413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~  488 (557)
T PRK13615        413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTL  488 (557)
T ss_pred             ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEec
Confidence               3579999999999  3322 2  235666643322 2211111 011100 0122789999999998776663

>PRK10115 protease 2; Provisional

Probab=88.86  E-value=27  Score=34.92  Aligned_cols=145  Identities=8%  Similarity=0.031  Sum_probs=72.2

Q ss_pred             EEEEEecCCCEEEEEecC------CeEEEEECCCC--eEEEEEecCCCCeE-EEEEcCCCCEEEEEe---CCCeEEEEeC
Q 041916           22 LKLQFLRNHFLLASINKF------GQLRYQDVTMG--EIVGNFRTGLGRTD-VMRVNPFNGVVSLGH---SGGTVTMWKP   89 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~sp~~~~l~sg~---~dg~v~lwd~   89 (359)
                      ..++|++|+..|+.+..+      ..|..+++.++  +-...+........ .+..+.++.+++..+   .++.+.+|+.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            569999998766555432      47888899887  33334443333333 233344777655543   3456888884


Q ss_pred             C--CCcceEEEeccCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCC-c--eeeEec-c-CCceeEEEcCCc-eEEE
Q 041916           90 T--TAAPLIKMLCHQGPVSALAFHPNGHLMATSGK----ECKIKIWDLRK-Y--EVLQTL-P-GHAKTLDFSQKG-LLAV  157 (359)
Q Consensus        90 ~--~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~-~--~~~~~~-~-~~i~~~~~s~~g-l~~~  157 (359)
                      .  ++.+...+..-.+....+. +.. ..++..+.    ...|...++.. +  +.+..- . ..+..+.++.+. +++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~  332 (686)
T PRK10115        255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEE  332 (686)
T ss_pred             cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEE
Confidence            3  3333222222222222222 323 33333332    22454445542 2  222222 2 246778888665 4444


Q ss_pred             EcCCc--EEEEcC
Q 041916          158 GTGSF--VQILGD  168 (359)
Q Consensus       158 ~~d~~--i~i~d~  168 (359)
                      ..++.  +.+++.
T Consensus       333 ~~~g~~~l~~~~~  345 (686)
T PRK10115        333 RQRGLTSLRQINR  345 (686)
T ss_pred             EeCCEEEEEEEcC
Confidence            45554  555553

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.26  E-value=3.9  Score=37.55  Aligned_cols=149  Identities=10%  Similarity=0.030  Sum_probs=85.8

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEE-EEE-ecCCC----CeE-EEEEcCCCCEEEEEeCCCeEEEE-eCCCC-
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNF-RTGLG----RTD-VMRVNPFNGVVSLGHSGGTVTMW-KPTTA-   92 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~~~----~v~-~~~~sp~~~~l~sg~~dg~v~lw-d~~~~-   92 (359)
                      ..+-..|||+.|+.-+. ..+.++++...... +.+ ....+    .|+ .+..-..|.-+.+++.||.|.-| |++.+ 
T Consensus       224 ~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~  302 (733)
T COG4590         224 SQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG  302 (733)
T ss_pred             HhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence            66778899998877654 58888888654321 111 11111    111 11112234567788899998877 44432 


Q ss_pred             cc----eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEE
Q 041916           93 AP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQI  165 (359)
Q Consensus        93 ~~----~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i  165 (359)
                      .+    ++.+.-...++..+.-..+.+-+++-...|++.++.....+++..-  -..+..+++||.+ .+..-..|.+++
T Consensus       303 ~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~  382 (733)
T COG4590         303 QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRL  382 (733)
T ss_pred             CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecCCceEE
Confidence            22    1122222233333332223344777777888887765554433222  3367788999999 666777789999


Q ss_pred             EcCCCC
Q 041916          166 LGDFSG  171 (359)
Q Consensus       166 ~d~~~~  171 (359)
                      +.+.+.
T Consensus       383 ~~l~Nr  388 (733)
T COG4590         383 AQLENR  388 (733)
T ss_pred             EEecCC
Confidence            987654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.13  E-value=3.5  Score=39.91  Aligned_cols=72  Identities=13%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             CCCEEEEEecCCeEEEEECCC----CeEEEEE-ec---------------------CCCCeEEEEEcC----CCCEEEEE
Q 041916           29 NHFLLASINKFGQLRYQDVTM----GEIVGNF-RT---------------------GLGRTDVMRVNP----FNGVVSLG   78 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~-~~---------------------~~~~v~~~~~sp----~~~~l~sg   78 (359)
                      +...|+.+..||.+.......    +...... ..                     ..+.+..+++++    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            666777778888888877664    2222111 10                     112355666666    66899999


Q ss_pred             eCCCeEEEEeCCCCcceEEEec
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      +.|+.+++||+.++.++.+...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEET
T ss_pred             eCCCeEEEEECCCCeEEEEecc
Confidence            9999999999999998776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.91  E-value=14  Score=30.46  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=80.9

Q ss_pred             eEEEe-CCCcEEEEeccC-CCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEH-GAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++|| .+|+++..-.-. ..+  -.+.-..|.-+.+| -.+|.-..+|.++.+++..+.-. +.-+.++.  |+..|..
T Consensus        70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~--d~~~Lim  145 (262)
T COG3823          70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFSYE-GEGWGLTS--DDKNLIM  145 (262)
T ss_pred             eEEEeccCceEEEEeecCCccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccccC-Ccceeeec--CCcceEe
Confidence            67788 667766543322 122  23333333334444 45888899999988888777633 34455553  4444555


Q ss_pred             EeCCCeEEEEeCCCCcceEEEecc--C---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----------
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCH--Q---GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----------  141 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h--~---~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------  141 (359)
                      ++...++..-|+.+.....+++.-  .   ..++.+.|- +|...|-.=.+..|...|..+|+.+..+.           
T Consensus       146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~  224 (262)
T COG3823         146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD  224 (262)
T ss_pred             eCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc
Confidence            555566777777665443333211  1   122333332 55555555555566666777776655441           


Q ss_pred             ----CCceeEEEcCCc
Q 041916          142 ----GHAKTLDFSQKG  153 (359)
Q Consensus       142 ----~~i~~~~~s~~g  153 (359)
                          .-.+.+++.|++
T Consensus       225 ~~~~nvlNGIA~~~~~  240 (262)
T COG3823         225 KSNDNVLNGIAHDPQQ  240 (262)
T ss_pred             ccccccccceeecCcC
Confidence                124677777776

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=87.74  E-value=16  Score=32.13  Aligned_cols=82  Identities=16%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--------------------CeEEEEe
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG--------------------GTVTMWK   88 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d--------------------g~v~lwd   88 (359)
                      +|++-++=+..|.|..+|.++|+....... .+....++|.  |.++++|-..                    .-|.+.|
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~v-pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid  288 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFL-PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID  288 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEEC-CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence            567777777788999999887864333322 2467788887  7777665321                    2356667


Q ss_pred             CCCCcceEEEe--ccCCCeEEEEEcCC
Q 041916           89 PTTAAPLIKML--CHQGPVSALAFHPN  113 (359)
Q Consensus        89 ~~~~~~~~~~~--~h~~~v~~i~~~~~  113 (359)
                      +++|..+..+.  +--..+.++++-|.
T Consensus       289 l~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       289 LNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             CCCCCEEEEEEeCCceeEEEEEEEecC
Confidence            77776655443  33345566666664

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.08  E-value=29  Score=32.24  Aligned_cols=181  Identities=10%  Similarity=0.014  Sum_probs=97.0

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------------
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-----------------   92 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-----------------   92 (359)
                      ..++++=+.||.+.+|+-+..-....+.. .--...+++.|....|++++.+..+..|....-                 
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~  223 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI  223 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence            36788889999999999765444444443 223445778888888999998888888864210                 


Q ss_pred             ---c---ceEEEeccCCCeE---EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--eccCCceeEE-------EcCCc-
Q 041916           93 ---A---PLIKMLCHQGPVS---ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--TLPGHAKTLD-------FSQKG-  153 (359)
Q Consensus        93 ---~---~~~~~~~h~~~v~---~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~i~~~~-------~s~~g-  153 (359)
                         +   +-.++... ..+.   .+.++.....+++-+. .++.+.+.. |....  .+.....+++       ..|+. 
T Consensus       224 ~~~k~l~~dWs~nlG-E~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~  300 (418)
T PF14727_consen  224 SSGKKLNPDWSFNLG-EQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTR  300 (418)
T ss_pred             cccccccceeEEECC-ceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence               0   11111111 1222   2333333334444443 456665553 43322  3333333332       23332 


Q ss_pred             --eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          154 --LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       154 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                        +++++.++++.||.-.+  -....-..+.   .-.|.-..|..-...+++-+.+|.+.+-+-|+..
T Consensus       301 ~~llV~t~t~~LlVy~d~~--L~WsA~l~~~---PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  301 LNLLVGTHTGTLLVYEDTT--LVWSAQLPHV---PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             eEEEEEecCCeEEEEeCCe--EEEecCCCCC---CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence              77788899999997221  1111111221   0023333344445567777778887777766554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.99  E-value=41  Score=35.51  Aligned_cols=144  Identities=9%  Similarity=0.093  Sum_probs=80.6

Q ss_pred             EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEE-cCC-------CCEEEEEeCCCeEEEEeCC--
Q 041916           22 LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV-NPF-------NGVVSLGHSGGTVTMWKPT--   90 (359)
Q Consensus        22 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-sp~-------~~~l~sg~~dg~v~lwd~~--   90 (359)
                      +.|-+-|. ++.=  .+.|+.+.+|+..++.....+.+-...|..+.. -|.       =++++.-+.--.|.++-+.  
T Consensus        82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~  159 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD  159 (1311)
T ss_pred             eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence            44544453 3322  245789999999997777777665555555432 222       2233333333345555332  


Q ss_pred             --CCcc---e--EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC----C---ce-e-------------eEec--
Q 041916           91 --TAAP---L--IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR----K---YE-V-------------LQTL--  140 (359)
Q Consensus        91 --~~~~---~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~----~---~~-~-------------~~~~--  140 (359)
                        ++..   .  .++......|+||+...+|+.+++| .||  .+|.+-    .   ++ +             +.++  
T Consensus       160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~  236 (1311)
T KOG1900|consen  160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS  236 (1311)
T ss_pred             cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence              1110   0  1122234568899977888877765 455  445441    1   01 1             0111  


Q ss_pred             -c----CCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916          141 -P----GHAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       141 -~----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                       +    .+|..+++....  +++-+..|+|.+||+..
T Consensus       237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence             2    367788887766  77888899999999765

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.97  E-value=23  Score=31.05  Aligned_cols=112  Identities=15%  Similarity=0.167  Sum_probs=70.3

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECC------CC-eEEEEEec-----CCCCeEEEEEcCCCC------------EEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVT------MG-EIVGNFRT-----GLGRTDVMRVNPFNG------------VVS   76 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~sp~~~------------~l~   76 (359)
                      .+.|+|+|.+.+-++....+...+||..      .. ..+-.+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3899999999888888888999999986      12 22333332     224577888875432            356


Q ss_pred             EEeCCCeEEEEeCCCCcc-----eEEEecc-CCCe-EEEEEc--CCCCEEEEEe-CCCeEEEEEcC
Q 041916           77 LGHSGGTVTMWKPTTAAP-----LIKMLCH-QGPV-SALAFH--PNGHLMATSG-KECKIKIWDLR  132 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~-----~~~~~~h-~~~v-~~i~~~--~~~~~l~~~~-~d~~i~iwd~~  132 (359)
                      .++.||+|.-|.......     ...+... .+.| ..+++.  ..+.+|+.+. ..++|-+||-.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            678999999998643322     2222211 2333 344544  3456666654 56788888864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.69  E-value=3.8  Score=23.26  Aligned_cols=29  Identities=17%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             cCCCeEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 041916          101 HQGPVSALAFHPNGHLMATSG-KE--CKIKIW  129 (359)
Q Consensus       101 h~~~v~~i~~~~~~~~l~~~~-~d--~~i~iw  129 (359)
                      ........+|+|||++|+.++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445667888999998876655 33  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.23  E-value=30  Score=31.62  Aligned_cols=165  Identities=15%  Similarity=0.187  Sum_probs=94.4

Q ss_pred             eEEEeCCCcEEEEeccCCCeE--EEEE--ecCCCE--EEEEec-C---CeEEEEECC--CCeEEEEEecC-------CCC
Q 041916            2 PYIYNRDGTELHCLKEHGAVL--KLQF--LRNHFL--LASINK-F---GQLRYQDVT--MGEIVGNFRTG-------LGR   62 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~--~l~~--s~~~~~--l~s~~~-d---g~i~iwd~~--~~~~~~~~~~~-------~~~   62 (359)
                      +++||.+|+++..+... .++  .+.+  .-+|..  |+.++. +   .+|++|.+.  ++. +..+...       ...
T Consensus        80 L~VYdL~Gk~lq~~~~G-r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e  157 (381)
T PF02333_consen   80 LYVYDLDGKELQSLPVG-RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSE  157 (381)
T ss_dssp             EEEEETTS-EEEEE-SS--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSS
T ss_pred             EEEEcCCCcEEEeecCC-CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCccccccccc
Confidence            57899999999888532 222  2222  223432  444443 2   479999775  343 3333321       123


Q ss_pred             eEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC---CC----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916           63 TDVMRV--NP-FNG-VVSLGHSGGTVTMWKPT---TA----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus        63 v~~~~~--sp-~~~-~l~sg~~dg~v~lwd~~---~~----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                      +..+|+  +| +|. +++....+|.+..|.+.   .+    +.++.|.. .+.+..+++.....+|+.+-++.-|.-|+.
T Consensus       158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A  236 (381)
T PF02333_consen  158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDA  236 (381)
T ss_dssp             EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEec
Confidence            556665  44 344 56667889998888764   22    24566654 457889999998889999999988888887


Q ss_pred             CC-----ceeeEec-----cCCceeEEEc--CCc---eEEEE-cCCcEEEEcCC
Q 041916          132 RK-----YEVLQTL-----PGHAKTLDFS--QKG---LLAVG-TGSFVQILGDF  169 (359)
Q Consensus       132 ~~-----~~~~~~~-----~~~i~~~~~s--~~g---l~~~~-~d~~i~i~d~~  169 (359)
                      ..     +..+...     ...+-.|++-  ++|   |++.+ .++...||+..
T Consensus       237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            63     2233222     2345666663  344   44444 35789999943

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.81  E-value=8.3  Score=27.03  Aligned_cols=43  Identities=14%  Similarity=0.248  Sum_probs=28.1

Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG  121 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~  121 (359)
                      +..+|.+.-||+.+++....+.+ -..-+.|+++||+.+++.+-
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence            34568899999998875444443 23458899999999876653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.66  E-value=28  Score=30.77  Aligned_cols=68  Identities=10%  Similarity=0.067  Sum_probs=50.7

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-----eEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-----TDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      +++...++|.+|+|+-.-.+|.+.|..+|+.+..+.+....     -...+|-.+-+.+-.+..++.|.|+|-
T Consensus       147 NsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  147 NSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             eeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            67777788999999988899999999999999998766221     112444444455555678889999985

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.30  E-value=27  Score=30.44  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=84.9

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE---EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce---
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN---FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL---   95 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~---   95 (359)
                      ..+.|+  +++...+..+.-++|.|+.+......   +... +--.+  |.-.|++...+..|.-+.+.|+.+.+..   
T Consensus        90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-GYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-ceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence            445554  45666677777899999987653322   2221 22233  4445778888875555778888765432   


Q ss_pred             EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916           96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGD  168 (359)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~  168 (359)
                      ..+....+.-..++.  .|++-+.+..|+-+.+-|+.+..   .+...  ...+.++..+++. +++.. +--+.+-|.
T Consensus       165 grya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvlivd~  240 (370)
T COG5276         165 GRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLIVDV  240 (370)
T ss_pred             eeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEEEec
Confidence            223233333355665  47788888899999999997642   23333  3367888888888 44444 434555553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.89  E-value=23  Score=29.31  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=60.2

Q ss_pred             CEEEEEeCCCeEEEEeCCC--CcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE-EcCC----ceeeE-
Q 041916           73 GVVSLGHSGGTVTMWKPTT--AAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---C---KIKIW-DLRK----YEVLQ-  138 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~---~i~iw-d~~~----~~~~~-  138 (359)
                      ..|+.+...+.|.+|++.+  .+++..|.. -+.|..+.++..|+||+|--.+   .   .+++| |.+.    ..++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            3444446677899999883  334555543 4789999999999999997432   2   56665 2221    11111 


Q ss_pred             ----------------------ec--cCCceeEEEcCC-ceEEEEcCCcEEEEcCCC
Q 041916          139 ----------------------TL--PGHAKTLDFSQK-GLLAVGTGSFVQILGDFS  170 (359)
Q Consensus       139 ----------------------~~--~~~i~~~~~s~~-gl~~~~~d~~i~i~d~~~  170 (359)
                                            .+  ..++.+++..|- |=+.+|.++.+.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence                                  01  234677777774 444455578899987543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.82  E-value=5.1  Score=22.71  Aligned_cols=32  Identities=9%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 041916           56 FRTGLGRTDVMRVNPFNGVVSLGH-SG--GTVTMW   87 (359)
Q Consensus        56 ~~~~~~~v~~~~~sp~~~~l~sg~-~d--g~v~lw   87 (359)
                      +......-....|||||+.|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334455677899999998776654 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.60  E-value=26  Score=36.56  Aligned_cols=28  Identities=21%  Similarity=0.117  Sum_probs=25.1

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTM   49 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~   49 (359)
                      ..++|+|.-.++|.+..+|.|.++-...
T Consensus        39 ~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   39 SALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             cceeeccccceEEEEEecccEEEecccc
Confidence            7789999999999999999999998653

>PRK13615 lipoprotein LpqB; Provisional

Probab=83.21  E-value=40  Score=32.64  Aligned_cols=96  Identities=5%  Similarity=-0.081  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC-CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccC
Q 041916          106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM  183 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  183 (359)
                      .+++.++++..++....++.+.++... +.....+.+ .++.-+|.++| +.++..+...++........... ....-.
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g~vWtv~~g~~~~l~~~~~~G~~~~-v~v~~~  414 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQGYVWSTPASDPRGLVAWGPDGVGHP-VAVSWT  414 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCCCEEEEeCCCceEEEEecCCCceEE-eecccc
Confidence            788999999999888878888887665 222223344 47888999999 55555444445444222212221 111111


Q ss_pred             CCCcceEEEEEeeCCCEEEEE
Q 041916          184 VKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       184 ~~~~~v~~~~~~p~~~~l~~~  204 (359)
                       .+..|..+..|+||-.++.-
T Consensus       415 -~~~~I~~lrvSrDG~R~Avi  434 (557)
T PRK13615        415 -ATGRVVSLEVARDGARVLVQ  434 (557)
T ss_pred             -CCCeeEEEEeCCCccEEEEE
Confidence             33479999999999876654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.92  E-value=62  Score=33.46  Aligned_cols=161  Identities=14%  Similarity=0.176  Sum_probs=85.4

Q ss_pred             eEEEe-CCCcEEEEeccCCC-----eEEEEEecCC--CEEEEEec-----------CCeEEEEECC-CCeEEEEEec--C
Q 041916            2 PYIYN-RDGTELHCLKEHGA-----VLKLQFLRNH--FLLASINK-----------FGQLRYQDVT-MGEIVGNFRT--G   59 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~-----~~~l~~s~~~--~~l~s~~~-----------dg~i~iwd~~-~~~~~~~~~~--~   59 (359)
                      |.+.| .+|..+..+....+     +..+.|+...  .++++|..           +|.++.|++- .|+.+.-+..  -
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            67778 66766666554333     2555665533  24444432           2445666553 3442222221  1


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-cee
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEV  136 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~  136 (359)
                      .++|.  +..|...++++| ....+++||+...++++...  .-+..|+.+.+  .+..+++|...-.|.++-.+. ...
T Consensus       935 ~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  935 PGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             Cccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence            23444  445655555544 45689999998776665433  22455667766  455677776544555444332 233


Q ss_pred             eEec-----cCCceeEEEcCCceEEEE-cCCcEEEEc
Q 041916          137 LQTL-----PGHAKTLDFSQKGLLAVG-TGSFVQILG  167 (359)
Q Consensus       137 ~~~~-----~~~i~~~~~s~~gl~~~~-~d~~i~i~d  167 (359)
                      +..+     +.+++++.+-..+-++++ .=|.+.+..
T Consensus      1010 l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred             EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEE
Confidence            4444     345677777666633333 336665554

>smart00564 PQQ beta-propeller repeat

Probab=82.83  E-value=3.8  Score=22.13  Aligned_cols=25  Identities=24%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             EEEEEecCCeEEEEECCCCeEEEEE
Q 041916           32 LLASINKFGQLRYQDVTMGEIVGNF   56 (359)
Q Consensus        32 ~l~s~~~dg~i~iwd~~~~~~~~~~   56 (359)
                      .++.++.+|.+..+|..+|+.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=82.78  E-value=6.4  Score=38.99  Aligned_cols=132  Identities=12%  Similarity=0.179  Sum_probs=81.3

Q ss_pred             CEEEEEecCCeEEEEECCCCeE---EEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEE--------EeCCCCcceEEE
Q 041916           31 FLLASINKFGQLRYQDVTMGEI---VGNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTM--------WKPTTAAPLIKM   98 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l--------wd~~~~~~~~~~   98 (359)
                      ..+..|+.++.|.++....+..   ...+ ......+.++.+++.  -+..|.-||++-.        ||..   +-..+
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~  622 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISI  622 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---Ccccc
Confidence            3567788899999998763321   1111 122345666666553  2334445555443        4432   33333


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCC
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFS  170 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~  170 (359)
                      .....+|++.++..|   ++.++.+|.|.++...+.......      ...|+++.....| +++...+..++.++..+
T Consensus       623 ~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet  698 (925)
T KOG3522|consen  623 PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET  698 (925)
T ss_pred             ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence            334567888888655   556677899999998876554444      2358999999999 66666666777765443

>PRK13613 lipoprotein LpqB; Provisional

Probab=82.41  E-value=52  Score=32.26  Aligned_cols=180  Identities=12%  Similarity=0.003  Sum_probs=0.0

Q ss_pred             CCeEEEEE------CCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcc----eEEEeccCCCeE
Q 041916           39 FGQLRYQD------VTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGG-TVTMWKPTTAAP----LIKMLCHQGPVS  106 (359)
Q Consensus        39 dg~i~iwd------~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg-~v~lwd~~~~~~----~~~~~~h~~~v~  106 (359)
                      +|.+...+      -....++.-..+... .+.+++.++++..++..+.++ .+++..+..+..    ...+.. ...++
T Consensus       334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-~~~Lt  412 (599)
T PRK13613        334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-DGRLT  412 (599)
T ss_pred             CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-cCccc


Q ss_pred             EEEEcCCCCEEEEEeC----CCeEEEEEcCCceeeEec----cC-CceeEEEcCCc-----eEEEEcCCcEEEEcCCCCC
Q 041916          107 ALAFHPNGHLMATSGK----ECKIKIWDLRKYEVLQTL----PG-HAKTLDFSQKG-----LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       107 ~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~----~~-~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~  172 (359)
                      .-+|.++| .+-+...    ...+++..- ++.+...-    .+ .|..+..|+||     ++-.+..+.|+|--+..+.
T Consensus       413 ~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~  490 (599)
T PRK13613        413 SPSWDGRG-DLWVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDA  490 (599)
T ss_pred             CCcCcCCC-CEEEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCC


Q ss_pred             CccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916          173 HNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN  221 (359)
Q Consensus       173 ~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~  221 (359)
                      .-...+.....  .....+.+++|..++.+++.|...+...-.....-||.
T Consensus       491 ~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~  541 (599)
T PRK13613        491 KAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGS  541 (599)
T ss_pred             CCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceEEEecCCc

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.97  E-value=41  Score=30.74  Aligned_cols=145  Identities=12%  Similarity=0.170  Sum_probs=79.6

Q ss_pred             EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc----CCCCE--EEEEe-CC---CeEEEEe
Q 041916           22 LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN----PFNGV--VSLGH-SG---GTVTMWK   88 (359)
Q Consensus        22 ~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----p~~~~--l~sg~-~d---g~v~lwd   88 (359)
                      -.|-.+|   ...+++.....+-+.+||+. |+.+..+..  +.++.+..-    -.|..  |+.++ .+   .+|.+|.
T Consensus        57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   57 PAIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             EEEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             CcEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            4444454   34677777888899999997 777777752  344433321    12332  44443 32   4689997


Q ss_pred             CCCC-cceEEEec-------cCCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEEcC---Cc----eeeEec--cCCceeE
Q 041916           89 PTTA-APLIKMLC-------HQGPVSALAF--HP-NGH-LMATSGKECKIKIWDLR---KY----EVLQTL--PGHAKTL  147 (359)
Q Consensus        89 ~~~~-~~~~~~~~-------h~~~v~~i~~--~~-~~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~--~~~i~~~  147 (359)
                      +... ..+..+..       ....+..+|+  +| +|. +.++...+|.+..|-+.   .+    +.++.|  .+.+..|
T Consensus       134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC  213 (381)
T PF02333_consen  134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC  213 (381)
T ss_dssp             EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred             ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence            6521 12333221       1123566666  44 455 45667788988888764   22    457777  4567777


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcCC
Q 041916          148 DFSQKG--LLAVGTGSFVQILGDF  169 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~~  169 (359)
                      ......  ++.+-.+--|.-|+..
T Consensus       214 VVDDe~g~LYvgEE~~GIW~y~Ae  237 (381)
T PF02333_consen  214 VVDDETGRLYVGEEDVGIWRYDAE  237 (381)
T ss_dssp             EEETTTTEEEEEETTTEEEEEESS
T ss_pred             EEecccCCEEEecCccEEEEEecC
Confidence            777654  7777777677777754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		3e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 221 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 255

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 223 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 257

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 199 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 233

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 195 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 199 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 233

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 200 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 234

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 216 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 250

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 198 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 232

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 204 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 238

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
           LL S +    L+  DV+ G+ +   +           NP + ++  G    +V +W   T
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92  AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
              L  +  H  PVSA+ F+ +G L+ +S  +   +IWD    + L+TL          +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
            FS  G  +LA    + ++ L D+S       Y GH
Sbjct: 202 KFSPNGKYILAATLDNDLK-LWDYSKGKCLKTYTGH 236

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKT---LDFSQKG-LLA 156
           H+ PV+ + FHP   +M ++ ++  IK+WD    +  +TL GH  +   + F   G LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199
             +      L DF G        GH     + +  VS  P  D
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNGD 205

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 74  VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
           + S G +  T+ ++K  T   L+ +  H+  V   AF  +   +AT   + K+KIWD   
Sbjct: 630 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 134 YEVLQTLPGHAKTLD---FSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGY 187
            +++ T   H++ ++   F+ K    LLA G+  F   L D +     +   GH+     
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 744
Query: 188 QIGKVSFRPYEDVLG 202
            +    F P +++L 
Sbjct: 745 SVNHCRFSPDDELLA 759

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 83  TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
           T+ ++K  T   L+ +  H+  V   AF  +   +AT   + K+KIWD    +++ T   
Sbjct: 645 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 704
Query: 143 HAKTLD---FSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP 196
           H++ ++   F+ K    LLA G+  F   L D +     +   GH+      +    F P
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----NSVNHCRFSP 760
Query: 197 YEDVLG 202
            +++L 
Sbjct: 761 DDELLA 766

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 4   IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
           ++NR+G  L  L  H + V  + F  +   +AS          N+ GQL           
Sbjct: 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----------- 213
Query: 54  GNFRTGLGRTDVMR---VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALA 109
              +T  G +  +R    +P    ++      TV +W       L++ L  H   V+ +A
Sbjct: 214 --LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVA 269
Query: 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
           F P+G  +A++  +  +K+W+ R  ++LQTL GH+ ++
Sbjct: 270 FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 97  KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
           ++  H   V  +AF P+G  +A++  +  +K+W+ R  ++LQTL GH+ ++
Sbjct: 11  RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 60

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 96  IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLD------F 149
           +K + H G V  L + P+G  +A++  +  IKIW++   +V +T+P   +  D      +
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 150 SQKGLLAVGTGSFVQILGDFSGSHNYSRYMGH 181
           +++ L+++    F+  +    GS +  RY GH
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRY-GH 323

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 10  TELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV 68
           T LH L+ H   V  LQF   H +  S++    +R  DV  G  +         T  M +
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDT--SIRVWDVETGNCIHTLTGHQSLTSGMEL 327
Query: 69  NPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---HQGPVSALAFHPNGHLMATSGKECK 125
              + ++  G++  TV +W   T   L  +     HQ  V+ L F+ N   + TS  +  
Sbjct: 328 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGT 383
Query: 126 IKIWDLRKYEVLQTL 140
           +K+WDL+  E ++ L
Sbjct: 384 VKLWDLKTGEFIRNL 398

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.12
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.09
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.01
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.96
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.79
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.75
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.7
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.68
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.66
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.64
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.61
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.51
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.33
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.33
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.32
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.3
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.26
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.24
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.22
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.18
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.16
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.06
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.04
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.97
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.94
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.85
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.69
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.64
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.47
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.47
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.4
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.21
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.12
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.9
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.84
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.82
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.59
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.52
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.5
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.49
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.2
3ott_A	758	Two-component system sensor histidine kinase; beta	96.19
3ott_A	758	Two-component system sensor histidine kinase; beta	95.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.92
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.81
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.37
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.29
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.12
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.12
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.24
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.78
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.76
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.17
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.14
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	91.98
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.25
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.5
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.76
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.19

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-37  Score=284.45  Aligned_cols=211  Identities=15%  Similarity=0.167  Sum_probs=194.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||| .+|..+.++.+|.+. ++++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus       131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~  210 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA  210 (410)
T ss_dssp             CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            589999 889999999999986 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC---
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK---  152 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~---  152 (359)
                      +.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|++||++++.+...+   ...|.+++|+|+   
T Consensus       211 s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  290 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY  290 (410)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred             eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999888777   456899999995   


Q ss_pred             -----------------c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          153 -----------------G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 -----------------g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                                       |  +++++.|+.|++||+.++ ..+..+.+|..    .|++++|+|++.+|++|+.||.+++|
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~----~v~~v~~~~~g~~l~s~s~D~~i~vw  365 (410)
T 1vyh_C          291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN----WVRGVLFHSGGKFILSCADDKTLRVW  365 (410)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred             cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCC----cEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                             5  778889999999998776 56677777765    89999999999999999999888887


Q ss_pred             EcC
Q 041916          214 VPG  216 (359)
Q Consensus       214 ~~~  216 (359)
                      ...
T Consensus       366 d~~  368 (410)
T 1vyh_C          366 DYK  368 (410)
T ss_dssp             CCT
T ss_pred             ECC
Confidence            653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=268.61  Aligned_cols=209  Identities=16%  Similarity=0.205  Sum_probs=192.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||| .++..+..+..|... .+++|+|++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++|
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            489999 889999999988876 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      +.||.|++||+.+++.+..+.+|..+|++++|+|++.+|++++.|++|++||++++.++..+   ...|.+++|+|++  
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~  262 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH  262 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999888777   3568999999999  


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +++++.|+.|++||+.++ ..+..+..|..    .|.+++|+|++.+|++++.||.+.+|.
T Consensus       263 l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          263 FVSSSSDKSVKVWDVGTR-TCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             EEEEETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCC-EEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            888899999999998766 66677777765    899999999999999988888777765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=266.63  Aligned_cols=213  Identities=17%  Similarity=0.231  Sum_probs=191.6

Q ss_pred             CeEEEe-CCCcE--EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTE--LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~--~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|+||+ .++..  ...+.+|... .+++|+|++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++.+|+
T Consensus        59 ~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  138 (321)
T 3ow8_A           59 LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA  138 (321)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE
T ss_pred             CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE
Confidence            589999 55543  4578899886 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG  153 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g  153 (359)
                      +|+.||.|.+||+.++.....+..|...|.+++|+|+|++|++|+.|+.|++||+++++++..+.   .+|.+++|+|++
T Consensus       139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS  218 (321)
T ss_dssp             EECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred             EEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988883   478999999999


Q ss_pred             --eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 --LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                        +++++.|+.|++||+.++ .....+.+|..    .|.+++|+|++.+|++|+.||.+.+|....+
T Consensus       219 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~----~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          219 QLLVTASDDGYIKIYDVQHA-NLAGTLSGHAS----WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             CEEEEECTTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CEEEEEcCCCeEEEEECCCc-ceeEEEcCCCC----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence              777788999999998765 56666777765    8999999999999999999998888775543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.5e-36  Score=263.12  Aligned_cols=212  Identities=17%  Similarity=0.189  Sum_probs=188.4

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||| .++.++..+..|... .+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus        36 ~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  115 (304)
T 2ynn_A           36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG  115 (304)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEE
Confidence            489999 889999999999887 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcC-
Q 041916           79 HSGGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQ-  151 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~-  151 (359)
                      +.||+|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||+++..+...+    ...+..++|+| 
T Consensus       116 s~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (304)
T 2ynn_A          116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL  195 (304)
T ss_dssp             ETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS
T ss_pred             CCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc
Confidence            999999999998774 4567889999999999999 6889999999999999999887765554    34678889987 


Q ss_pred             -Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          152 -KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       152 -~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                       ++  +++++.|+.|++||+.++ ..+..+.+|..    .|.+++|+|++.+|++|+.||.+++|....
T Consensus       196 ~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          196 PDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             TTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCC----CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence             55  788889999999998766 66777788865    899999999999999988888777776543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=266.16  Aligned_cols=208  Identities=13%  Similarity=0.183  Sum_probs=173.2

Q ss_pred             CeEEEe-CCCcEEE----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-C
Q 041916            1 YPYIYN-RDGTELH----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-G   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~   73 (359)
                      +|+||| .+++.+.    .+.+|.+. ++++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~  183 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS  183 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence            489999 7776443    34578886 999999999999999999999999999999999999999999999999988 5


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL  147 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  147 (359)
                      +|++|+.||+|++||++++++...+.  .|...+++++|+| ++.+|++|+.|++|++||+++++++..+   ...|.++
T Consensus       184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL  263 (344)
T ss_dssp             EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred             ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            88999999999999999999888764  4556799999999 5678999999999999999999988887   4578999


Q ss_pred             EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916          148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV  214 (359)
Q Consensus       148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~  214 (359)
                      +|+|+|   +++++.|++|+|||+.++ + +..+.+|..    .|++++|+|++. +|++|+.||.+.+|.
T Consensus       264 ~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~~~~~H~~----~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCSLAVLDSSLS-E-LFRSQAHRD----FVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTCC-E-EEEECCCSS----CEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEccCCCeEEEEEeCCCeEEEEECCCC-c-EEEEcCCCC----CEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            999997   567889999999997665 3 344566655    899999999986 455666665544443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-35  Score=271.36  Aligned_cols=209  Identities=14%  Similarity=0.207  Sum_probs=192.4

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||| .++.++.++.+|... .+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.+++|+|++.+|++|
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            478999 888999999999986 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCceeeE
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN--------------------GHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                      +.||+|++||+.++.+...+.+|...|.+++|+|+                    |.+|++|+.|++|++||++++.++.
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            99999999999999999999999999999999996                    6789999999999999999999888


Q ss_pred             ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          139 TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       139 ~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .+   .+.|.+++|+|+|  +++++.|+.|++||+.++ ..+..+.+|..    .|++++|+|++.+|++|+.||.+.+|
T Consensus       333 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~----~v~~l~~~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCC----cEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence            87   4568999999999  888899999999998665 66777777765    89999999999999998888877776


Q ss_pred             E
Q 041916          214 V  214 (359)
Q Consensus       214 ~  214 (359)
                      .
T Consensus       408 ~  408 (410)
T 1vyh_C          408 E  408 (410)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-35  Score=260.61  Aligned_cols=217  Identities=11%  Similarity=0.176  Sum_probs=188.0

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      ...+|.+|.+. ++++|+|++.+|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45788999886 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCC-c--eEEEEcCCc
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQK-G--LLAVGTGSF  162 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~-g--l~~~~~d~~  162 (359)
                      .+++.+..+.+|.+.|++++|+|++.+|++|+.|++|++||++++ .+...+   ...|.+++|+|. +  +++++.|+.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999987 444444   457899999994 4  788889999


Q ss_pred             EEEEcCCCCCCccceeecccCCCCcceEEEEEee--CCCEEEEEcCCCeEEE----------------------------
Q 041916          163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSSI----------------------------  212 (359)
Q Consensus       163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~~~i----------------------------  212 (359)
                      |++||+............|.    ..+..+.|+|  ++.+|++|+.||.+++                            
T Consensus       165 v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~  240 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL  240 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCT----TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred             EEEEECCCCCccceeccCCc----CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence            99999876633333333332    3788999987  6789999999997766                            


Q ss_pred             --EEcCCCCCccccccCCCcc
Q 041916          213 --LVPGSGEPNFDSWVANPFE  231 (359)
Q Consensus       213 --~~~~~~d~~~~~~~~~~~~  231 (359)
                        +++++.|+.+++|+.....
T Consensus       241 ~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          241 PIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             SEEEEEETTSCEEEEETTTCC
T ss_pred             CEEEEEcCCCeEEEEECCCCc
Confidence              4667788899999876543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.1e-35  Score=262.53  Aligned_cols=213  Identities=15%  Similarity=0.170  Sum_probs=187.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      +|+||| .++..+..+..|... .+++|+|++.+|++|+.|+.|++||+.++    .....+.+|.+.|.++.|+|++. 
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-  156 (340)
T 1got_B           78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-  156 (340)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-
T ss_pred             cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-
Confidence            489999 889999999999886 99999999999999999999999999875    45677889999999999998865 


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQ  151 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~  151 (359)
                      +++++.||+|++||+.++.++..+.+|.+.|.+++|+|++.+|++|+.|++|++||++++.++..+   ...|.+++|+|
T Consensus       157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p  236 (340)
T 1got_B          157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred             EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence            889999999999999999999999999999999999999999999999999999999999888887   45789999999


Q ss_pred             Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ++  +++++.|+.|++||+..+ .....+. |.. ....|++++|+|++.+|++|+.||.+.+|....
T Consensus       237 ~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          237 NGNAFATGSDDATCRLFDLRAD-QELMTYS-HDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTT-EEEEEEC-CTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCEEEEEcCCCcEEEEECCCC-cEEEEEc-cCC-cccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            99  788889999999998765 3333332 221 233699999999999999999999888887544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-34  Score=260.32  Aligned_cols=206  Identities=18%  Similarity=0.257  Sum_probs=185.3

Q ss_pred             eEEEe-CCC----cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDG----TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |++|+ .++    .....+.+|.+. .++.|++++. |++++.|++|++||+.+++++..+.+|.+.|.+++|+|++.+|
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence            78999 443    356778899887 9999999875 8889999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFS  150 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s  150 (359)
                      ++|+.||.|++||++++.++..+.+|...|++++|+|++++|++|+.|++|++||++++..+..+.     ..|.+++|+
T Consensus       200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999988877662     358999999


Q ss_pred             CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      |+|  +++++.|+.|++||+.++ .....+.+|..    +|.+++|+|++.+|++|+.||.+.+|
T Consensus       280 ~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          280 KSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCCCEEEEECCCCeEEEEEcccC-cEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCccEEec
Confidence            999  777888999999997765 56677777765    89999999999999999998877776

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=265.02  Aligned_cols=193  Identities=13%  Similarity=0.127  Sum_probs=166.1

Q ss_pred             CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916           18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN----FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~   93 (359)
                      ...+++++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|.+.|++++|+|++.+|++|+.||+|++||+.+++
T Consensus        82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV  160 (344)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            3456999999985 678999999999999999875443    44899999999999999999999999999999999999


Q ss_pred             ceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc---eEEEEcCCcEE
Q 041916           94 PLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG---LLAVGTGSFVQ  164 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g---l~~~~~d~~i~  164 (359)
                      ++..+.+|.+.|++++|+|++ .+|++++.|++|++||+++++++..+     ...+.+++|+|++   +++++.|+.|+
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            999999999999999999987 47899999999999999999888776     2357899999976   55677899999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEcC
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~~  216 (359)
                      +||+.++ ..+..+.+|..    .|++++|+|++ .+|++|+.||.+++|...
T Consensus       241 ~wd~~~~-~~~~~~~~h~~----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          241 LVDTKST-SCVLSSAVHSQ----CVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             EEESCC---CCEEEECCSS----CEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEECCCC-cEEEEEcCCCC----CEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            9998776 67777888865    89999999998 578888888877777543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=262.09  Aligned_cols=201  Identities=15%  Similarity=0.192  Sum_probs=172.5

Q ss_pred             cEEEEeccCCC-e-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE---EEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916           10 TELHCLKEHGA-V-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG---NFRTGLGRTDVMRVNPFNGVVSLGHSGGTV   84 (359)
Q Consensus        10 ~~~~~l~~h~~-~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v   84 (359)
                      .++.++.+|.. . .+++|+|+|.+||+|+.|++|+|||+.++....   ...+|...|.+++|+|++.+|++|+.|++|
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            46788999986 4 999999999999999999999999998876432   235799999999999999999999999999


Q ss_pred             EEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEec---cCCceeEEEcCCc--e
Q 041916           85 TMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQTL---PGHAKTLDFSQKG--L  154 (359)
Q Consensus        85 ~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~---~~~i~~~~~s~~g--l  154 (359)
                      ++||+.++.  ++..+.+|.+.|++++|+|++++|++|+.|++|++||++++.   ++..+   ...|.+++|+|++  +
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence            999988764  567788999999999999999999999999999999998753   34444   4568999999999  7


Q ss_pred             EEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          155 LAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++++.|+.|++||...+. .....+.+|..    .|++++|+|++.+|++|+.||.+++|.
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            888899999999976542 12345666655    899999999999999999999998874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.2e-34  Score=257.98  Aligned_cols=194  Identities=16%  Similarity=0.253  Sum_probs=173.9

Q ss_pred             eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 041916           15 LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKPTT   91 (359)
Q Consensus        15 l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~~~   91 (359)
                      +..|... .+++|+|++..|++++.|++|++||+.+++++..+.+|...|.+++|+|  ++.+|++|+.||.|++||+++
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~  229 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS  229 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            3456665 8899999999999999999999999999999999999999999999988  468999999999999999999


Q ss_pred             CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEcCCc--eEEEEcCCcEE
Q 041916           92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKG--LLAVGTGSFVQ  164 (359)
Q Consensus        92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~g--l~~~~~d~~i~  164 (359)
                      ++++..+.+|...|++++|+|++.+|++++.|++|++||++++..+..+.     ..+.+++|+|+|  +++++.|+.|+
T Consensus       230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~  309 (354)
T 2pbi_B          230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN  309 (354)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence            99999999999999999999999999999999999999999988776662     257899999999  67778899999


Q ss_pred             EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +||+.++ ..+..+.+|..    .|++++|+|++.+|++|+.||.+.+|
T Consensus       310 vwd~~~~-~~~~~l~~h~~----~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          310 VWDVLKG-SRVSILFGHEN----RVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEETTTC-SEEEEECCCSS----CEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEECCCC-ceEEEEECCCC----cEEEEEECCCCCEEEEEcCCCCEEec
Confidence            9998766 55666777765    89999999999999999999988776

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-34  Score=251.74  Aligned_cols=218  Identities=16%  Similarity=0.213  Sum_probs=191.7

Q ss_pred             CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916            9 GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMW   87 (359)
Q Consensus         9 g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lw   87 (359)
                      .....++.+|... ++++|+|++.+|++|+.||.|++||+.+++....+.+|...|.+++|+|++.+|++|+.||.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            4457788999887 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCc
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSF  162 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~  162 (359)
                      |+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+   ..++.+++|+|++  +++++.|+.
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            99999999999999999999999999999999999999999999999888877   3578999999999  778889999


Q ss_pred             EEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE------------------------------
Q 041916          163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI------------------------------  212 (359)
Q Consensus       163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i------------------------------  212 (359)
                      |++||+.++ .....+..+   +..++..++|+|++.+|++++.||.+.+                              
T Consensus       173 i~~wd~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          173 CRIWDTASG-QCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             EEEEETTTC-CEEEEECCS---SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred             EEEEECCCC-ceeeEEecc---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence            999998776 333333322   2347999999999999999999996655                              


Q ss_pred             ---EEcCCCCCccccccCCCc
Q 041916          213 ---LVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       213 ---~~~~~~d~~~~~~~~~~~  230 (359)
                         +++++.|+.+++|++...
T Consensus       249 ~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          249 GKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             SCEEEECCTTSCEEEEETTTC
T ss_pred             CcEEEEECCCCEEEEEECCCc
Confidence               355667788888887543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7e-34  Score=252.85  Aligned_cols=201  Identities=17%  Similarity=0.265  Sum_probs=176.7

Q ss_pred             CeEEEe-CC-----CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RD-----GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~-----g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      +|++|+ ..     +..+..+.+|... .+++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.
T Consensus        41 ~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~  120 (319)
T 3frx_A           41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS  120 (319)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred             cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence            478998 22     3457889999987 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL---PGHA  144 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i  144 (359)
                      +|++|+.||+|++||++ +.++..+.+|...|.++.|+|.      +.+|++++.|+.|++||+++++....+   ...|
T Consensus       121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v  199 (319)
T 3frx_A          121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI  199 (319)
T ss_dssp             EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred             EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence            99999999999999996 5677888899999999999984      458999999999999999999887777   4578


Q ss_pred             eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      .+++|+|+|  +++++.|+.|++||+.++ ..+..+..+.     .|.+++|+|++.+|++++.++
T Consensus       200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~-----~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          200 NTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD-----EVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS-----CEEEEEECSSSSEEEEEETTE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC-----cEEEEEEcCCCCEEEEEcCCC
Confidence            999999999  778889999999998765 4455554432     799999999999998887665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-33  Score=248.94  Aligned_cols=217  Identities=22%  Similarity=0.267  Sum_probs=190.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||+ .++.....+.+|... .+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus        46 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           46 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            489999 889999999999886 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG-  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g-  153 (359)
                      +.||.|++||+++++.+..+..|..+|.+++|+|++.+|++++.|+.|++||+++++++..+    ...+..++|+|++ 
T Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (312)
T 4ery_A          126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  205 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS
T ss_pred             eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999887766    3468899999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                       +++++.|+.|++||+.++ .....+..|.. ....+......+++.+|++|+.||.+.+|......
T Consensus       206 ~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  270 (312)
T 4ery_A          206 YILAATLDNTLKLWDYSKG-KCLKTYTGHKN-EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE  270 (312)
T ss_dssp             EEEEEETTTEEEEEETTTT-EEEEEECSSCC-SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred             EEEEEcCCCeEEEEECCCC-cEEEEEEecCC-ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence             778889999999998766 55666666643 22223333344678999999999999999865543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-33  Score=257.82  Aligned_cols=213  Identities=17%  Similarity=0.224  Sum_probs=181.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCC-------------------eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGA-------------------VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL   60 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~-------------------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~   60 (359)
                      +++||+ .+|..+..+..|..                   +++++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.
T Consensus        86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  165 (393)
T 1erj_A           86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE  165 (393)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC
Confidence            478999 88998888876531                   5899999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      ..|.+++|+|++.+|++|+.||+|++||+++++....+. +...+.+++|+| ++.+|++|+.|+.|++||++++..+..
T Consensus       166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~  244 (393)
T 1erj_A          166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER  244 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe
Confidence            999999999999999999999999999999998777765 567899999999 899999999999999999999887665


Q ss_pred             c----------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC-----------CccceeecccCCCCcceEEEEEee
Q 041916          140 L----------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS-----------HNYSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       140 ~----------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      +          ...|.+++|+|+|  +++++.|+.|++||+.+..           .....+.+|..    .|.+++|+|
T Consensus       245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~  320 (393)
T 1erj_A          245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQ  320 (393)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS----CEEEEEECG
T ss_pred             ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC----cEEEEEECC
Confidence            5          2468999999999  7788899999999986532           12334556654    899999999


Q ss_pred             CCCEEEEEcCCCeEEEEEcCCC
Q 041916          197 YEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       197 ~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      ++.+|++|+.||.+.+|....+
T Consensus       321 ~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          321 NDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             GGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999998888765443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.6e-34  Score=256.60  Aligned_cols=209  Identities=11%  Similarity=0.148  Sum_probs=172.5

Q ss_pred             CeEEEe-CCCcEEE----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-C
Q 041916            1 YPYIYN-RDGTELH----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-G   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~   73 (359)
                      +|+||| .++..+.    ...+|... ++++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++ .
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence            589999 6666542    34478776 999999999999999999999999999999999999999999999999987 4


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL  147 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  147 (359)
                      ++++++.||.|++||+++++++..+.  .|...+++++|+|+ +.+|++|+.|+.|++||+++++++..+   ...|.++
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence            78999999999999999988766554  56778999999997 568999999999999999999888777   4578999


Q ss_pred             EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEc
Q 041916          148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|+|++   +++++.|++|+|||+.++ +.+. ..+|..    .|++++|+| ++.+|++|+.||.+.+|..
T Consensus       276 ~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~-~~~H~~----~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCTVAVLDADFS-EVFR-DLSHRD----FVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTSC-EEEE-ECCCSS----CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEECCCC-cEeE-ECCCCC----CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            999987   567888999999998766 3333 345654    899999999 7888888877776666553

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-33  Score=256.48  Aligned_cols=212  Identities=18%  Similarity=0.209  Sum_probs=170.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCE----------------------------------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFL----------------------------------------------   32 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~----------------------------------------------   32 (359)
                      +|+||| .++..+..+..|... .+++|+|++.+                                              
T Consensus        89 ~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~  168 (380)
T 3iz6_a           89 RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD  168 (380)
T ss_dssp             EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS
T ss_pred             eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC
Confidence            377888 777777777777664 66666666544                                              


Q ss_pred             ----EEEEecCCeEEEEECCCCeEEEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCcceEEEecc
Q 041916           33 ----LASINKFGQLRYQDVTMGEIVGNF-----RTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPT-TAAPLIKMLCH  101 (359)
Q Consensus        33 ----l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~-~~~~~~~~~~h  101 (359)
                          |++|+.|++|++||+.+++.+..+     .+|...|.+++|+| ++.+|++|+.||+|++||++ ...++..+.+|
T Consensus       169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h  248 (380)
T 3iz6_a          169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH  248 (380)
T ss_dssp             SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred             CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence                555556666666666666666666     56888999999987 78999999999999999998 45778889999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----------CceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916          102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----------HAKTLDFSQKG--LLAVGTGSFVQILGDF  169 (359)
Q Consensus       102 ~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~i~~~~~s~~g--l~~~~~d~~i~i~d~~  169 (359)
                      .+.|++++|+|++.+|++|+.|++|++||++++.++..+..          .+.+++|+|+|  +++++.||.|++||+.
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            99999999999999999999999999999999988877621          37899999999  6677789999999976


Q ss_pred             CCCCcccee----ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          170 SGSHNYSRY----MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       170 ~~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      .+ .....+    .+|    ...|++++|+|+|.+|++|+.||.+.+|...+
T Consensus       329 ~~-~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          329 LA-EMVLNLGTLQNSH----EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             TC-CEEEEECCSCSSC----CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CC-ceEEEEecccCCC----CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            66 333333    344    44899999999999999988888777776443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-33  Score=270.38  Aligned_cols=209  Identities=16%  Similarity=0.148  Sum_probs=174.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~   71 (359)
                      +|++|| .+++.+.++.+|... ++++|+|++.+|++|+.|++|++||+.+++++..+.       +|.+.|.+++|+|+
T Consensus       171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd  250 (611)
T 1nr0_A          171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  250 (611)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence            589999 888889999999986 999999999999999999999999999999988884       79999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceE-------------------------------------------EEeccCCCeEEE
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLI-------------------------------------------KMLCHQGPVSAL  108 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~-------------------------------------------~~~~h~~~v~~i  108 (359)
                      +.+|++|+.|++|++||+.+++.+.                                           .+.+|...|+++
T Consensus       251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l  330 (611)
T 1nr0_A          251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL  330 (611)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence            9999999999999999998765433                                           334789999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------------------------------------------
Q 041916          109 AFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------------------------------------------  140 (359)
Q Consensus       109 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------------------------------  140 (359)
                      +|+|+|++|++++.|++|++||+.++.+...+                                                
T Consensus       331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~  410 (611)
T 1nr0_A          331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL  410 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence            99999999999999999999999865432211                                                


Q ss_pred             -------------------------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916          141 -------------------------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH  181 (359)
Q Consensus       141 -------------------------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~  181 (359)
                                                           ...+.+++|+|+|  +++++.|+.|++||+..+.........|
T Consensus       411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h  490 (611)
T 1nr0_A          411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH  490 (611)
T ss_dssp             SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred             CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCC
Confidence                                                 0124678999999  7778889999999975542111112445


Q ss_pred             cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          182 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       182 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ..    .|++++|+|+|++|++++.|+.+.+|
T Consensus       491 ~~----~v~~v~fspdg~~las~s~d~~v~~w  518 (611)
T 1nr0_A          491 PA----EITSVAFSNNGAFLVATDQSRKVIPY  518 (611)
T ss_dssp             SS----CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CC----ceEEEEECCCCCEEEEEcCCCCEEEE
Confidence            44    89999999999999999988765554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=250.83  Aligned_cols=213  Identities=14%  Similarity=0.153  Sum_probs=175.8

Q ss_pred             CeEEEe-CCCcEE---EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDGTEL---HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~---~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      +|+||| .++...   ....+|... .+++|+|++.+|++|+.|++|++||+.++  .++..+.+|...|.+++|+|++.
T Consensus        39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  118 (345)
T 3fm0_A           39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN  118 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC
Confidence            589999 555432   223678876 99999999999999999999999999876  46788899999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCc---ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEec---cCCce
Q 041916           74 VVSLGHSGGTVTMWKPTTAA---PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTL---PGHAK  145 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~---~~~i~  145 (359)
                      +|++|+.|++|++||+.++.   ++..+.+|...|.+++|+|++.+|++++.|++|++||++++..  ...+   .+.|.
T Consensus       119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~  198 (345)
T 3fm0_A          119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW  198 (345)
T ss_dssp             EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence            99999999999999998764   3556778999999999999999999999999999999988753  3445   45799


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcCCCCCCc--------------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHN--------------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      +++|+|+|  +++++.|++|++|+.......              +..+.++   +...|.+++|+|++..|++++.|+.
T Consensus       199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~~~d~~  275 (345)
T 3fm0_A          199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF---HSRTIYDIAWCQLTGALATACGDDA  275 (345)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS---CSSCEEEEEECTTTCCEEEEETTSC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC---CCCcEEEEEEecCCCEEEEEeCCCe
Confidence            99999999  788889999999985332111              1112221   3348999999999999999999988


Q ss_pred             EEEEEcC
Q 041916          210 SSILVPG  216 (359)
Q Consensus       210 ~~i~~~~  216 (359)
                      +++|...
T Consensus       276 i~vw~~~  282 (345)
T 3fm0_A          276 IRVFQED  282 (345)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-33  Score=246.51  Aligned_cols=213  Identities=15%  Similarity=0.195  Sum_probs=183.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC------C
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF------N   72 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~------~   72 (359)
                      +|+||| .+++.+..+.+|... .+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.+++|+|.      +
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            489999 899999999999987 999999999999999999999999996 6778889999999999999995      4


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEc
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFS  150 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s  150 (359)
                      ..|++|+.|+.|++||+++.+....+.+|...|++++|+|+|.+|++++.|++|++||+++++++..+  ...+.+++|+
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s  246 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS  246 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred             cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence            48999999999999999999988899999999999999999999999999999999999999988887  5679999999


Q ss_pred             CCc-eEEEEcCCcEEEEcCCCCCCccceeecc----cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGH----SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      |++ +++++.++.+++|++... .....+..+    ...+...+.+++|+|+|++|++|+.||.+++|..
T Consensus       247 p~~~~la~~~~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          247 PNRYWLAAATATGIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             SSSSEEEEEETTEEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            999 777777888999996543 222222111    1112336899999999999999988887777754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-33  Score=260.45  Aligned_cols=210  Identities=10%  Similarity=0.126  Sum_probs=179.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +|++|| .++.....+..|.......|+|++.+|++|+.||.|++||+.++.....+.+|...|.+++|+|++.+|++|+
T Consensus        79 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s  158 (420)
T 3vl1_A           79 HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS  158 (420)
T ss_dssp             EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe
Confidence            378899 5555555566663336678899999999999999999999999999888889999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------------
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------------  141 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------  141 (359)
                      .||.|++||+.+++.+..+.+|.+.|++++|+|++.+|++++.|++|++||+++++++..+.                  
T Consensus       159 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  238 (420)
T 3vl1_A          159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT  238 (420)
T ss_dssp             TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECC
T ss_pred             CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999998887763                  


Q ss_pred             ---------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCe
Q 041916          142 ---------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGW  209 (359)
Q Consensus       142 ---------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~  209 (359)
                               ..+.+++|+|+|  +++++.||.|++||+.++.........|..    .|++++|+|++. +|++|+.||.
T Consensus       239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~g~~dg~  314 (420)
T 3vl1_A          239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC----SCNSLTVDGNNANYIYAGYENGM  314 (420)
T ss_dssp             CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS----CEEEEEECSSCTTEEEEEETTSE
T ss_pred             cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC----CceeEEEeCCCCCEEEEEeCCCe
Confidence                     345566778999  777888999999998777433333334443    899999999999 9999999997


Q ss_pred             EEEEE
Q 041916          210 SSILV  214 (359)
Q Consensus       210 ~~i~~  214 (359)
                      +.+|.
T Consensus       315 i~vwd  319 (420)
T 3vl1_A          315 LAQWD  319 (420)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-34  Score=257.57  Aligned_cols=210  Identities=11%  Similarity=0.084  Sum_probs=172.6

Q ss_pred             CeEEEe-CCC--cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDG--TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      +|+||| .++  ..+..+.+|... ++++|+|++.+|++++.|+.|++||+.++.   ....+..|...|.+++|+|++.
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  113 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED  113 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC
Confidence            478999 666  678889999886 999999999999999999999999999877   6777888999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCc---ceEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----------------
Q 041916           74 VVSLGHSGGTVTMWKPTTAA---PLIKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLR-----------------  132 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~---~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-----------------  132 (359)
                      +|++|+.||.|++||++++.   ....+.. |.+.|++++|+|++.+|++++.|+.|++||++                 
T Consensus       114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  193 (377)
T 3dwl_C          114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL  193 (377)
T ss_dssp             CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred             EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence            99999999999999999887   4677777 99999999999999999999999999999995                 


Q ss_pred             -CceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          133 -KYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       133 -~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                       .+.++..+  .+.|.+++|+|+|  +++++.|+.|++||+.++..+   +..+..|..    +|.+++|+|++.+|++|
T Consensus       194 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          194 PFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL----PLRSLLWANESAIVAAG  269 (377)
T ss_dssp             CEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS----CEEEEEEEETTEEEEEE
T ss_pred             chhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC----ceEEEEEcCCCCEEEEE
Confidence             34455555  4568999999999  778889999999998777432   556666655    89999999999999999


Q ss_pred             cCCCeEEEEE
Q 041916          205 HSMGWSSILV  214 (359)
Q Consensus       205 ~~dg~~~i~~  214 (359)
                      +.++.+.++.
T Consensus       270 ~~~~~~~~~~  279 (377)
T 3dwl_C          270 YNYSPILLQG  279 (377)
T ss_dssp             SSSSEEEECC
T ss_pred             cCCcEEEEEe
Confidence            9888764433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-32  Score=246.95  Aligned_cols=200  Identities=16%  Similarity=0.206  Sum_probs=179.3

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      ....++.+|... ++++|+|++.+|+||+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+.+|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            457889999987 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC------cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCC--c--eE
Q 041916           89 PTTA------APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQK--G--LL  155 (359)
Q Consensus        89 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~--g--l~  155 (359)
                      +...      .....+.+|.+.|.+++|+|++..|++++.|++|++||+.+++++..+.   ..|.+++|+|+  |  ++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            8643      3456777899999999999999999999999999999999999888883   46889999874  4  78


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +++.|+.|++||+.++ .....+..|..    .|++++|+|++.+|++|+.||.+++|.
T Consensus       215 sgs~Dg~v~~wd~~~~-~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~D~~v~lwd  268 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSG-QCVQAFETHES----DVNSVRYYPSGDAFASGSDDATCRLYD  268 (354)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCC-cEEEEecCCCC----CeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            8889999999998776 56667777765    899999999999999999999877764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-32  Score=245.26  Aligned_cols=212  Identities=19%  Similarity=0.238  Sum_probs=175.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCC---
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFN---   72 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~---   72 (359)
                      +|+||| .++..+..+.+|... .+++|+|++.+|++|+.|++|++||+. +.......   .|...|.+++|+|++   
T Consensus        99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccc
Confidence            489999 899999999999987 999999999999999999999999998 44444443   688899999999987   


Q ss_pred             -------CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceeeEec--cC
Q 041916           73 -------GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQTL--PG  142 (359)
Q Consensus        73 -------~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~  142 (359)
                             .+|++|+.||.|++||. .......+.+|...|++++|+|+|++|++|+.|+.|++||++. ..+...+  ..
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~  256 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS  256 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSS
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCC
Confidence                   78999999999999994 4566778889999999999999999999999999999999954 3344444  45


Q ss_pred             CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCcc-ceeecc--------cCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          143 HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNY-SRYMGH--------SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       143 ~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~-~~~~~~--------~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      .|.+++|+|++ +++++.|+.|++||+.+..... ..+..+        .. +...|.+++|+|+|.+|++|+.||.+++
T Consensus       257 ~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          257 TINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             CEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred             cEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEE
Confidence            79999999999 8888889999999987653221 122110        01 3347999999999999999999988887


Q ss_pred             EEc
Q 041916          213 LVP  215 (359)
Q Consensus       213 ~~~  215 (359)
                      |..
T Consensus       336 w~~  338 (343)
T 2xzm_R          336 FSF  338 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=245.39  Aligned_cols=211  Identities=14%  Similarity=0.238  Sum_probs=168.4

Q ss_pred             CeEEEeC--------CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEE
Q 041916            1 YPYIYNR--------DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMR   67 (359)
Q Consensus         1 ~v~iwd~--------~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~   67 (359)
                      +|+|||.        ++..+..+.+|... ++++|+|++.+|++|+.|++|++||+..    .+++..+.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            5899983        23467888999886 9999999999999999999999999943    256788899999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc--------e
Q 041916           68 VNPFNGVVSLGHSGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKY--------E  135 (359)
Q Consensus        68 ~sp~~~~l~sg~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~--------~  135 (359)
                      |+|++.+|++|+.||+|++||+.++  .++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||++.+        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999998776  577888899999999999998  778999999999999999764        3


Q ss_pred             eeEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC-Ccc-ceeecccCCCCcceEEEEEee--CCCEEEEEcC
Q 041916          136 VLQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS-HNY-SRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHS  206 (359)
Q Consensus       136 ~~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~  206 (359)
                      +...+    ...|.+++|++++ +++++.||.|++||..++. ... .....|   ....|.+++|+|  ++.+|++|+.
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h---~~~~v~~v~~~~~~~~~~las~s~  317 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH---GVYEINVVKWLELNGKTILATGGD  317 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTT---TTSCEEEEEEC-----CCEEEEET
T ss_pred             EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccc---ccceEEEEEEecCCCceEEEEecC
Confidence            34443    3468999999988 8889999999999965542 111 112334   222799999999  6888999888


Q ss_pred             CCeEEEEE
Q 041916          207 MGWSSILV  214 (359)
Q Consensus       207 dg~~~i~~  214 (359)
                      ||.+++|.
T Consensus       318 Dg~v~~W~  325 (330)
T 2hes_X          318 DGIVNFWS  325 (330)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEEEE
Confidence            88777765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-32  Score=247.42  Aligned_cols=208  Identities=16%  Similarity=0.208  Sum_probs=176.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s   77 (359)
                      +|+||| .++..+..+.+|... ++++|+|++.+|++|+.|++|++||+.++++...+. +...+.+++|+| ++.+|++
T Consensus       146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~  224 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAA  224 (393)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEE
T ss_pred             eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEE
Confidence            589999 888899999999986 999999999999999999999999999999887776 557899999999 8899999


Q ss_pred             EeCCCeEEEEeCCCCcceEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce------------eeE
Q 041916           78 GHSGGTVTMWKPTTAAPLIKM-------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE------------VLQ  138 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~  138 (359)
                      |+.||.|++||+.++..+..+       .+|.+.|++++|+|+|.+|++++.|++|++||+++..            +..
T Consensus       225 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~  304 (393)
T 1erj_A          225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV  304 (393)
T ss_dssp             EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred             EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence            999999999999998877766       5799999999999999999999999999999998642            233


Q ss_pred             ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee------CCCEEEEEcCC
Q 041916          139 TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP------YEDVLGIGHSM  207 (359)
Q Consensus       139 ~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~l~~~~~d  207 (359)
                      .+   ...|.+++|+|++  +++++.|+.|++||+.++ ..+..+.+|..    .|.+++|+|      ++.+|++|+.|
T Consensus       305 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~D  379 (393)
T 1erj_A          305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGD  379 (393)
T ss_dssp             EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCC
Confidence            33   3468999999999  778889999999998776 56677777865    899999987      56677776666


Q ss_pred             CeEEEEE
Q 041916          208 GWSSILV  214 (359)
Q Consensus       208 g~~~i~~  214 (359)
                      |.+++|.
T Consensus       380 g~i~iW~  386 (393)
T 1erj_A          380 CKARIWK  386 (393)
T ss_dssp             SEEEEEE
T ss_pred             CcEEECc
Confidence            6555554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.4e-32  Score=238.77  Aligned_cols=212  Identities=14%  Similarity=0.167  Sum_probs=175.3

Q ss_pred             CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916            1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF-   71 (359)
Q Consensus         1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~-   71 (359)
                      +|+||| .  ++..+.++.+|.+. ++++|+|+  +.+|++|+.|++|++||+.++.  .+..+..|...|.+++|+|+ 
T Consensus        32 ~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~  111 (297)
T 2pm7_B           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  111 (297)
T ss_dssp             CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred             EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence            589999 3  34678899999987 99999863  8999999999999999999874  56678889999999999997 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEEcCCce
Q 041916           72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHPN-------------GHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                       +.+|++|+.||.|++||++++.  ....+.+|...|++++|+|+             +.+|++|+.|++|++||++++.
T Consensus       112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence             8899999999999999998763  24567799999999999997             5799999999999999998765


Q ss_pred             ----eeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCcc--cee--ecccCCCCcceEEEEEeeCCC
Q 041916          136 ----VLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNY--SRY--MGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       136 ----~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~--~~~--~~~~~~~~~~v~~~~~~p~~~  199 (359)
                          +...+   .+.|.+++|+|+   +  +++++.|++|++||+.......  ..+  ..|    ...|.+++|+|+++
T Consensus       192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGN  267 (297)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC----SSCEEEEEECSSSC
T ss_pred             ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC----CCcEEEEEECCCCC
Confidence                44555   456899999998   3  7788899999999976542211  122  233    34899999999999


Q ss_pred             EEEEEcCCCeEEEEEcC
Q 041916          200 VLGIGHSMGWSSILVPG  216 (359)
Q Consensus       200 ~l~~~~~dg~~~i~~~~  216 (359)
                      +|++++.||.+.+|...
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            99999998888887643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.7e-33  Score=250.86  Aligned_cols=208  Identities=13%  Similarity=0.146  Sum_probs=163.8

Q ss_pred             eEEEe-CCCcEE----EEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----EEecCCCCeEEEEEcCC
Q 041916            2 PYIYN-RDGTEL----HCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----NFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         2 v~iwd-~~g~~~----~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~   71 (359)
                      |++|+ .++...    ....+|.. +++++|+|++.+| +++.||+|++||+.+++...    ...+|...|.+++|+|+
T Consensus        72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd  150 (357)
T 4g56_B           72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD  150 (357)
T ss_dssp             EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS
T ss_pred             EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC
Confidence            67787 555432    22334554 5999999998654 57789999999999886542    34479999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec-----cCCce
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL-----PGHAK  145 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~  145 (359)
                      +.+|++|+.||.|++||+++++++..+.+|.+.|++++|+|++. ++++++.|++|++||+++++++..+     ...+.
T Consensus       151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~  230 (357)
T 4g56_B          151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT  230 (357)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc
Confidence            99999999999999999999999999999999999999999875 7899999999999999998876655     34689


Q ss_pred             eEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEc
Q 041916          146 TLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVP  215 (359)
Q Consensus       146 ~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~  215 (359)
                      +++|+|++   +++++.|+.|++||+.++ .....+..|..    .|++++|+|++ .+|++|+.||.+++|..
T Consensus       231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~----~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          231 SVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQ----NITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             EEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSS----CEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             chhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccce----eEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            99999986   556678999999998766 56667777755    89999999987 57888888887777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-33  Score=255.46  Aligned_cols=207  Identities=15%  Similarity=0.212  Sum_probs=182.3

Q ss_pred             EEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 041916            4 IYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus         4 iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d   81 (359)
                      .|+ .+..+..+|.+|.+. ++++|+|++.+|+||+.||+|++||+.+++....+..|...|.+++|+|++.+|++|+.|
T Consensus        50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            466 566778899999987 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCc-------ceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--------cCCce
Q 041916           82 GTVTMWKPTTAA-------PLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--------PGHAK  145 (359)
Q Consensus        82 g~v~lwd~~~~~-------~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~i~  145 (359)
                      +.|++||+.+..       ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||++++.++..+        ...+.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            999999987532       34557799999999999996 457999999999999999999887665        23578


Q ss_pred             eEEEcC-Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          146 TLDFSQ-KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       146 ~~~~s~-~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +++|+| ++  +++++.|+.|++||+.........+.+|..    .|++++|+|++.+|++|+.||.+++|.
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~D~~i~lwd  277 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG----DINSVKFFPDGQRFGTGSDDGTCRLFD  277 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS----CCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC----CeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence            999987 55  788889999999998766567777888866    899999999999999999999887764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=242.61  Aligned_cols=211  Identities=14%  Similarity=0.123  Sum_probs=168.2

Q ss_pred             CeEEEe-CCC--cEEEEe-cc-CCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEE
Q 041916            1 YPYIYN-RDG--TELHCL-KE-HGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMR   67 (359)
Q Consensus         1 ~v~iwd-~~g--~~~~~l-~~-h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~   67 (359)
                      +|+||| ..+  ..+..+ .. |... ++++|+|++.+|++|+.|++|++||+..       ..++..+.+|...|.+++
T Consensus        35 ~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  114 (330)
T 2hes_X           35 KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA  114 (330)
T ss_dssp             CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred             EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence            489999 443  455666 44 8776 9999999999999999999999999843       456778899999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCC----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec-
Q 041916           68 VNPFNGVVSLGHSGGTVTMWKPTTA----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL-  140 (359)
Q Consensus        68 ~sp~~~~l~sg~~dg~v~lwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~-  140 (359)
                      |+|++.+|++|+.|++|++||++..    +++..+.+|...|++++|+|++.+|++++.|++|++||++++  .++..+ 
T Consensus       115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~  194 (330)
T 2hes_X          115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN  194 (330)
T ss_dssp             ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence            9999999999999999999999532    456678899999999999999999999999999999999876  566666 


Q ss_pred             --cCCceeEEEcCC--c--eEEEEcCCcEEEEcCCCCCC-------ccceeec-ccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          141 --PGHAKTLDFSQK--G--LLAVGTGSFVQILGDFSGSH-------NYSRYMG-HSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       141 --~~~i~~~~~s~~--g--l~~~~~d~~i~i~d~~~~~~-------~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                        .+.|.+++|+|+  +  +++++.|++|++||+..+..       ....+.. |.    ..|.+++|++++ +|++++.
T Consensus       195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~v~~s~~~-~l~s~~~  269 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK----RQVYNVAWGFNG-LIASVGA  269 (330)
T ss_dssp             CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS----SCEEEEEECTTS-CEEEEET
T ss_pred             CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc----cceEEEEEcCCC-EEEEEeC
Confidence              457899999998  5  67888999999999754311       1122222 43    489999999765 7888888


Q ss_pred             CCeEEEEEcC
Q 041916          207 MGWSSILVPG  216 (359)
Q Consensus       207 dg~~~i~~~~  216 (359)
                      ||.+.+|...
T Consensus       270 dg~v~iw~~~  279 (330)
T 2hes_X          270 DGVLAVYEEV  279 (330)
T ss_dssp             TSCEEEEEEE
T ss_pred             CCEEEEEEcC
Confidence            8888887654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.8e-32  Score=241.54  Aligned_cols=209  Identities=18%  Similarity=0.165  Sum_probs=166.4

Q ss_pred             CCcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe-----EEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            8 DGTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE-----IVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         8 ~g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      +.....+|++|.+. ++++|+|+ +.+|+||+.|++|++||+.+++     +...+.+|...|.+++|+|++.+|++|+.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            33456789999997 99999997 6899999999999999987643     56778889999999999999988888877


Q ss_pred             CCeEEEEeC-----------------------------------------------------------------------
Q 041916           81 GGTVTMWKP-----------------------------------------------------------------------   89 (359)
Q Consensus        81 dg~v~lwd~-----------------------------------------------------------------------   89 (359)
                      ||.|++|+.                                                                       
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            765554443                                                                       


Q ss_pred             ----------------CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916           90 ----------------TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ  151 (359)
Q Consensus        90 ----------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~  151 (359)
                                      .+++.+..+.+|.++|++++|+|++++|++|+.|+.|++||+++..++..+  ...+.+++|+|
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  266 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP  266 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence                            223333345567889999999999999999999999999999999988888  45789999999


Q ss_pred             Cc-eEEEEcCCcEEEEcCCCCCCccceeecc-----cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGH-----SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ++ +++++.|+.|++||+... .....+..+     ...+...|++++|+|++++|++|+.||.+++|...+
T Consensus       267 ~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          267 NRYWLCAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             SSSEEEEEETTEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CCceeeccCCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99 888999999999997654 222222110     001334899999999999999999998888776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.5e-32  Score=257.63  Aligned_cols=204  Identities=20%  Similarity=0.338  Sum_probs=183.8

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      .|++||.++..+..+..|... ++++|+|++.+|++++.|+.|++||. +++.+..+.+|...|.+++|+|++.+|++++
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  445 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS  445 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence            378999889999999999886 99999999999999999999999995 5788899999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L  154 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l  154 (359)
                      .|+.|++||+ +++.+..+.+|...|++++|+|++.+|++++.|++|++||. +++++..+   ...|++++|+|+|  +
T Consensus       446 ~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l  523 (577)
T 2ymu_A          446 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI  523 (577)
T ss_dssp             TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence            9999999996 46778888999999999999999999999999999999995 56777777   4579999999999  7


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++++.|+.|++||. ++ ..+..+.+|..    .|++++|+|++++|++++.||.+.+|
T Consensus       524 ~s~~~dg~v~lwd~-~~-~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          524 ASASDDKTVKLWNR-NG-QLLQTLTGHSS----SVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             EEEETTSEEEEECT-TS-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEECcCEEEEEeC-CC-CEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            78889999999994 44 57777888866    89999999999999998888877666

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-31  Score=238.96  Aligned_cols=199  Identities=14%  Similarity=0.148  Sum_probs=172.8

Q ss_pred             EEEEeccCCCe-EEEEE-----ec-CCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916           11 ELHCLKEHGAV-LKLQF-----LR-NHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~-----s~-~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      ....|.+|.+. ++++|     ++ ++.+|++|+.|++|++||+.+       +.+...+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            46788999987 99999     76 899999999999999999974       346678889999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcC
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQ  151 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~  151 (359)
                      +|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.........     ...+.+++|+|
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            9999999999999999999999999999999999999999999999999999999854332222     34689999999


Q ss_pred             Cc------------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          152 KG------------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       152 ~g------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ++            +++++.|+.|++||. .. .....+..|..    .|.+++|+|++++|++|+.||.+.+|..
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~~~~~~~~h~~----~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NF-QIRYTFKAHES----NVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEET-TT-EEEEEEECCSS----CEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcC-CC-ceeEEEcCccc----cceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            73            778889999999993 33 45556667755    8999999999999999999998888875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-31  Score=255.68  Aligned_cols=205  Identities=19%  Similarity=0.331  Sum_probs=183.5

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +|++||.++..+..+.+|... .+++|+|++.+|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            478999888888899999886 99999999999999999999999995 5788899999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L  154 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l  154 (359)
                      .|+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|++|++||+. ++.+..+   ...|.+++|+|++  +
T Consensus       405 ~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          405 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            9999999995 567788899999999999999999999999999999999974 5555555   5678999999999  7


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++++.|+.|++||. ++ ..+..+.+|..    .|++++|+|++++|++++.||.+.+|.
T Consensus       483 as~~~d~~i~iw~~-~~-~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          483 ASASDDKTVKLWNR-NG-QLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             EEEETTSEEEEEET-TS-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCEEEEEcC-CC-CEEEEEeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            77889999999994 44 56777888865    899999999999999999998888875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-31  Score=238.15  Aligned_cols=213  Identities=15%  Similarity=0.152  Sum_probs=183.8

Q ss_pred             CeEEEe-CCCcE---EEEec--cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYN-RDGTE---LHCLK--EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~~g~~---~~~l~--~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~   71 (359)
                      +|++|| .++..   +..+.  .|... .+++|+|++.+|++++.||.|++||+.+++  ....+..|...|.+++|+|+
T Consensus        73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  152 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred             eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence            378999 55542   33333  67766 999999999999999999999999999887  66778889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      +.+|++++.||.|.+||+.+++.+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+  ...+.+++|
T Consensus       153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~  232 (337)
T 1gxr_A          153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999887776  568999999


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +|++  +++++.++.|++||+.+..  ...+..|..    .|.+++|+|++++|++++.||.+.+|....+.
T Consensus       233 s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          233 CPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCcc----ceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            9999  7777789999999977652  334455544    89999999999999999999988888765443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=7.4e-32  Score=248.23  Aligned_cols=213  Identities=13%  Similarity=0.068  Sum_probs=182.9

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      .|+||| .++.....+.+|... ++++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  199 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA  199 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            489999 888888888899887 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceEEEec---cCCCeEE---------------------EEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLC---HQGPVSA---------------------LAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~---h~~~v~~---------------------i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      +.||.|++||+++++++..+..   |...|.+                     ++|+|++++|++++.||.|++||++++
T Consensus       200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred             cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999999999998888874   3344444                     555789999999999999999999998


Q ss_pred             eeeEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          135 EVLQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       135 ~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      ..+..+    ...+.+++|+|++   +++++.||.|++||+.++..++..+..|   +...|.++ +.|++.+|++++.|
T Consensus       280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~-~~~~~~~l~s~~~d  355 (420)
T 3vl1_A          280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN---EGTPINNV-YFAAGALFVSSGFD  355 (420)
T ss_dssp             CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES---TTSCEEEE-EEETTEEEEEETTT
T ss_pred             ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc---CCCCceEE-EeCCCCEEEEecCC
Confidence            877666    3568999999998   7778889999999988876666777765   33478887 45678888888888


Q ss_pred             CeEEEEEcCC
Q 041916          208 GWSSILVPGS  217 (359)
Q Consensus       208 g~~~i~~~~~  217 (359)
                      |.+.+|....
T Consensus       356 ~~v~iw~~~~  365 (420)
T 3vl1_A          356 TSIKLDIISD  365 (420)
T ss_dssp             EEEEEEEECC
T ss_pred             ccEEEEeccC
Confidence            8888777554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.2e-32  Score=260.24  Aligned_cols=209  Identities=12%  Similarity=0.162  Sum_probs=181.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|+||+ .++.....+.+|... ++++|+|+|.+||+|+.|++|+|||+.++  .....+.+|.++|.+++|+|++..|+
T Consensus        40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~  119 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA  119 (611)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred             EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEE
Confidence            378999 788889999999987 99999999999999999999999999754  35567889999999999999999999


Q ss_pred             EEeCC----CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEecc---CCceeEE
Q 041916           77 LGHSG----GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLD  148 (359)
Q Consensus        77 sg~~d----g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~  148 (359)
                      +++.+    +.|.+||  ++.....+.+|...|++++|+|++. .|++|+.|++|++||..+++++..+.   ..|.+++
T Consensus       120 ~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          120 AVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  197 (611)
T ss_dssp             EEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             EEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence            98865    4788887  4566777889999999999999987 59999999999999999998888773   4689999


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCCCCCccceee-------cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM-------GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      |+|+|  +++++.|++|++||+.++ .....+.       +|..    .|.+++|+|++++|++|+.|+.+++|...
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~----~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSG----SVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSS----CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCC----CEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999  778899999999997766 3433332       4544    89999999999999999999999998654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-31  Score=235.46  Aligned_cols=202  Identities=12%  Similarity=0.156  Sum_probs=169.5

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGTVTM   86 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~v~l   86 (359)
                      +..+.+|.+. ++++|+|+|++||+|+.|++|++||+..  ++++..+.+|.++|.+++|+|+  +.+|++|+.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            3467889887 9999999999999999999999999974  3678899999999999999864  899999999999999


Q ss_pred             EeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee--eEec---cCCceeEEEcCC-----
Q 041916           87 WKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV--LQTL---PGHAKTLDFSQK-----  152 (359)
Q Consensus        87 wd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~---~~~i~~~~~s~~-----  152 (359)
                      ||+.++.  .+..+.+|...|++++|+|+  |.+|++++.|++|++||++++..  ...+   ...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9998774  56677889999999999997  89999999999999999987532  2222   457899999996     


Q ss_pred             --------c--eEEEEcCCcEEEEcCCCCCC---ccceeecccCCCCcceEEEEEeeCC---CEEEEEcCCCeEEEEEcC
Q 041916          153 --------G--LLAVGTGSFVQILGDFSGSH---NYSRYMGHSMVKGYQIGKVSFRPYE---DVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       153 --------g--l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~dg~~~i~~~~  216 (359)
                              +  +++++.|+.|++||+.++..   ....+.+|..    .|.+++|+|++   .+|++|+.|+.+.+|...
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                    3  77888999999999766532   3345556655    89999999985   788888888888887654


Q ss_pred             C
Q 041916          217 S  217 (359)
Q Consensus       217 ~  217 (359)
                      .
T Consensus       238 ~  238 (297)
T 2pm7_B          238 N  238 (297)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-31  Score=241.07  Aligned_cols=206  Identities=17%  Similarity=0.224  Sum_probs=177.9

Q ss_pred             CeEEEe-CCCcEEEEecc-CCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKE-HGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~-h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .|+||| .+|.....+.. |... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +.+|++
T Consensus       114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~  191 (401)
T 4aez_A          114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSS  191 (401)
T ss_dssp             EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEE
T ss_pred             eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEE
Confidence            389999 88888877776 5665 999999999999999999999999999999999999999999999994  579999


Q ss_pred             EeCCCeEEEEeCC-CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916           78 GHSGGTVTMWKPT-TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG  153 (359)
Q Consensus        78 g~~dg~v~lwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g  153 (359)
                      |+.||.|.+||++ ....+..+.+|.+.|.+++|+|++.+|++++.|+.|++||++++.++..+   ...|.+++|+|++
T Consensus       192 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred             EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence            9999999999998 45667788899999999999999999999999999999999999888777   4578999999987


Q ss_pred             --eEEEE---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE--EcCCCeEEEEE
Q 041916          154 --LLAVG---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI--GHSMGWSSILV  214 (359)
Q Consensus       154 --l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--~~~dg~~~i~~  214 (359)
                        +++++   .|+.|++||+.++ .....+. +.    ..|.+++|+|++.+|++  |+.+|.+.+|.
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CS----SCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred             CCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CC----CcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence              55544   5899999998766 4444443 32    27999999999999998  44788766654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=257.08  Aligned_cols=209  Identities=11%  Similarity=0.099  Sum_probs=172.8

Q ss_pred             CeEEEe-CCCcE----EEEeccCCC-eEEEEEecC------CCEEEEEecCCeEEEEECCCCeE-----------EEEEe
Q 041916            1 YPYIYN-RDGTE----LHCLKEHGA-VLKLQFLRN------HFLLASINKFGQLRYQDVTMGEI-----------VGNFR   57 (359)
Q Consensus         1 ~v~iwd-~~g~~----~~~l~~h~~-~~~l~~s~~------~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~   57 (359)
                      +|+||| .++..    ..++.+|.+ +.+++|+|+      +.+||+++.||+|++||+.++..           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            378999 55553    245677766 499999996      57999999999999999987642           24678


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEEcCC
Q 041916           58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSAL--AFHPNG-HLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i--~~~~~~-~~l~~~~~d~~i~iwd~~~  133 (359)
                      +|...|++++|+|++ .|++|+.||+|++||++++ .+...+.+|.+.|++|  +|+|+| .+|++|+.|++|++||+++
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            899999999999864 8999999999999999976 4556788999999999  578888 8999999999999999999


Q ss_pred             ceeeEec----c-CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          134 YEVLQTL----P-GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       134 ~~~~~~~----~-~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ++++..+    . ..+.+++|+|++  +++++.|++|++||+.++ .....+.+|..    .|++++|+|++.+|++|+.
T Consensus       343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~----~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRET----TITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSS----CEEEEECCSSCCBCEEEET
T ss_pred             CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCC----ceEEEEeCCCCCeEEEEEC
Confidence            8765444    2 247899999998  677778899999998776 45566777765    8999999999999999888


Q ss_pred             CCeEEEEEc
Q 041916          207 MGWSSILVP  215 (359)
Q Consensus       207 dg~~~i~~~  215 (359)
                      ||.+.+|..
T Consensus       418 Dgtv~lwd~  426 (524)
T 2j04_B          418 DGSLIITNA  426 (524)
T ss_dssp             TTEEECCBS
T ss_pred             CCEEEEEec
Confidence            887776654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.9e-32  Score=241.28  Aligned_cols=212  Identities=15%  Similarity=0.129  Sum_probs=175.1

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCC-
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPF-   71 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~-   71 (359)
                      +|+||| .++.  .+..+.+|.+. ++++|+|  ++.+|++|+.|++|++||+.++  ..+..+.+|...|.+++|+|+ 
T Consensus        36 ~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~  115 (316)
T 3bg1_A           36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD  115 (316)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT
T ss_pred             eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC
Confidence            489999 6664  46789999987 9999986  4899999999999999999987  466778899999999999998 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEE
Q 041916           72 -NGVVSLGHSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPN-----------------GHLMATSGKECKIKIWD  130 (359)
Q Consensus        72 -~~~l~sg~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~-----------------~~~l~~~~~d~~i~iwd  130 (359)
                       +.+|++|+.||+|++||+..+..   ...+.+|...|.+++|+|+                 +.+|++|+.|++|++||
T Consensus       116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd  195 (316)
T 3bg1_A          116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK  195 (316)
T ss_dssp             TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred             CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence             78999999999999999987632   2345689999999999997                 46899999999999999


Q ss_pred             cCCc---eeeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEe
Q 041916          131 LRKY---EVLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFR  195 (359)
Q Consensus       131 ~~~~---~~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~  195 (359)
                      ++..   .++..+   .+.|.+++|+|++      +++++.|++|++|++....   .....+..|..    .|.+++|+
T Consensus       196 ~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----~v~~v~~s  271 (316)
T 3bg1_A          196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND----VVWHVSWS  271 (316)
T ss_dssp             ECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS----CEEEEEEC
T ss_pred             eCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC----cEEEEEEc
Confidence            9754   455555   3568999999974      7888999999999976521   12234445544    89999999


Q ss_pred             eCCCEEEEEcCCCeEEEEEcC
Q 041916          196 PYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       196 p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      |++.+|++|+.||.+.+|...
T Consensus       272 p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          272 ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999888887643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.8e-31  Score=260.24  Aligned_cols=209  Identities=18%  Similarity=0.203  Sum_probs=175.4

Q ss_pred             CeEEEe-CC-----CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RD-----GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~-----g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      +|+||+ .+     +.....+.+|... ++++|+|++.+|++|+.||+|++||+.++..+..+.+|...|.+++|+|++.
T Consensus       406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~  485 (694)
T 3dm0_A          406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR  485 (694)
T ss_dssp             EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC
Confidence            489998 33     3456788999987 9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEE---eccCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceeeEec---cCCce
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKM---LCHQGPVSALAFHPNG--HLMATSGKECKIKIWDLRKYEVLQTL---PGHAK  145 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~---~~h~~~v~~i~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~  145 (359)
                      +|++|+.|++|++||+.........   .+|...|.+++|+|++  .+|++++.|++|++||++++++...+   .+.|.
T Consensus       486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~  565 (694)
T 3dm0_A          486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS  565 (694)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            9999999999999998654332222   3688899999999986  68999999999999999999888777   45789


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +++|+|+|  +++++.|+.|++||+.++ ..+..+..+     ..|.+++|+|++.+|++++.++ +.+|...
T Consensus       566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~~~-i~iwd~~  631 (694)
T 3dm0_A          566 TVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEAN-----SVIHALCFSPNRYWLCAATEHG-IKIWDLE  631 (694)
T ss_dssp             EEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCS-----SCEEEEEECSSSSEEEEEETTE-EEEEETT
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCC-----CcEEEEEEcCCCcEEEEEcCCC-EEEEECC
Confidence            99999999  778889999999998776 343333332     2799999999998887766543 5555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6e-31  Score=257.88  Aligned_cols=214  Identities=17%  Similarity=0.150  Sum_probs=180.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC--C
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFN--G   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~--~   73 (359)
                      +|+||| .++..+..+.+|... .+++|+|++.+|++|+.|++|++||+.........   .+|...|.+++|+|++  .
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            489999 889999999999986 99999999999999999999999998654433222   3688899999999987  5


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ  151 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~  151 (359)
                      .|++|+.||+|++||+++++....+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+  ...+.+++|+|
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp  612 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP  612 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999999999999999988877  45789999999


Q ss_pred             Cc-eEEEEcCCcEEEEcCCCCCCccceeecccC---------------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM---------------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ++ +++++.++.|++||+.++ ..+..+..+..               .+...+++++|+|+|.+|++|+.||.+++|..
T Consensus       613 ~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          613 NRYWLCAATEHGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             SSSEEEEEETTEEEEEETTTT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCcEEEEEcCCCEEEEECCCC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            99 888888889999998765 33332221100               01114789999999999999888887777754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4e-30  Score=237.22  Aligned_cols=209  Identities=17%  Similarity=0.257  Sum_probs=170.2

Q ss_pred             CeEEEe-CCCcEEEEec--cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------------------
Q 041916            1 YPYIYN-RDGTELHCLK--EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-------------------   57 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~--~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------   57 (359)
                      +|+||| .+|..+..+.  +|.. +++++|+|+|.+||+|+.||.|++||+.+++++..+.                   
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sg  205 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG  205 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEE
Confidence            489999 8999877665  5655 4999999999999999999999999999887665543                   


Q ss_pred             ----------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEEEeccCCCeEEEEEc
Q 041916           58 ----------------------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA----PLIKMLCHQGPVSALAFH  111 (359)
Q Consensus        58 ----------------------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~----~~~~~~~h~~~v~~i~~~  111 (359)
                                            +|...+.++.|+|++.++++++.||.|.+|++.+++    .+.....|.+.|.+++|+
T Consensus       206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~  285 (420)
T 4gga_A          206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  285 (420)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred             eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence                                  455556677778888888888889999999887664    355667899999999999


Q ss_pred             CCC-CEEEEE--eCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeeccc
Q 041916          112 PNG-HLMATS--GKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHS  182 (359)
Q Consensus       112 ~~~-~~l~~~--~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~  182 (359)
                      |++ .+++++  +.|++|++||++++.++..+  ...+.++.|+|++  +++++  .|+.|+|||+.++ ..+..+.+|.
T Consensus       286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~  364 (420)
T 4gga_A          286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHT  364 (420)
T ss_dssp             TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCS
T ss_pred             CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCC
Confidence            955 455554  47999999999999988887  5578999999998  55554  5899999998776 6777888886


Q ss_pred             CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .    .|++++|+|+|.+|++|+.||.+++|.
T Consensus       365 ~----~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          365 S----RVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             S----CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             C----CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            6    899999999999998877777555553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-30  Score=239.25  Aligned_cols=215  Identities=16%  Similarity=0.186  Sum_probs=180.6

Q ss_pred             CeEEEe-CCC-c---EEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEE
Q 041916            1 YPYIYN-RDG-T---ELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVM   66 (359)
Q Consensus         1 ~v~iwd-~~g-~---~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~   66 (359)
                      .|+||+ ... .   .+..+.+|.+. ++++|+| ++.+|++|+.||.|++||+.++       .++..+.+|...|.++
T Consensus        58 ~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~  137 (402)
T 2aq5_A           58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV  137 (402)
T ss_dssp             CEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred             EEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence            478999 332 2   34567789887 9999999 8999999999999999999988       6788899999999999


Q ss_pred             EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEE--eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c-
Q 041916           67 RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKM--LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P-  141 (359)
Q Consensus        67 ~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~-  141 (359)
                      +|+|++ .+|++|+.||.|++||+.+++.+..+  ..|.+.|++++|+|++.+|++++.|+.|++||+++++++..+ . 
T Consensus       138 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  217 (402)
T 2aq5_A          138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP  217 (402)
T ss_dssp             EECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence            999998 69999999999999999999999998  789999999999999999999999999999999999988776 2 


Q ss_pred             --C-CceeEEEcCCc-eEEEE----cCCcEEEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEE-EEcCCCeEE
Q 041916          142 --G-HAKTLDFSQKG-LLAVG----TGSFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLG-IGHSMGWSS  211 (359)
Q Consensus       142 --~-~i~~~~~s~~g-l~~~~----~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~~~  211 (359)
                        + .+.+++|+|++ +++++    .|+.|++||+.+......... .+    ...+.+++|+|++.+|+ +|+.||.+.
T Consensus       218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~g~~dg~i~  293 (402)
T 2aq5_A          218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT----SSGVLLPFFDPDTNIVYLCGKGDSSIR  293 (402)
T ss_dssp             SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC----CSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred             CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC----CCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence              2 37999999999 55554    789999999877644333332 23    33799999999999886 455678777


Q ss_pred             EEEcCCCC
Q 041916          212 ILVPGSGE  219 (359)
Q Consensus       212 i~~~~~~d  219 (359)
                      +|....+.
T Consensus       294 i~d~~~~~  301 (402)
T 2aq5_A          294 YFEITSEA  301 (402)
T ss_dssp             EEEECSST
T ss_pred             EEEecCCC
Confidence            77665444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-30  Score=235.44  Aligned_cols=216  Identities=14%  Similarity=0.162  Sum_probs=179.2

Q ss_pred             CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916            1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF-   71 (359)
Q Consensus         1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~-   71 (359)
                      +|+||| .  ++..+..+.+|... ++++|+|+  +.+|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+ 
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  113 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  113 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC
Confidence            489999 4  56678889999886 99999987  8999999999999999999987  77888889999999999999 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEEcCCce
Q 041916           72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHP-------------NGHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                       +.+|++++.||.|++||+.++.  ....+..|...|++++|+|             ++.+|++++.|+.|++||++++.
T Consensus       114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence             9999999999999999998874  4456678999999999999             69999999999999999998754


Q ss_pred             ----eeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          136 ----VLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       136 ----~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                          ++..+   .+.|.+++|+|+   +  +++++.||.|++||+.++.............+...|++++|+|++.+|++
T Consensus       194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  273 (379)
T 3jrp_A          194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  273 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred             cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence                33344   457899999999   7  77888999999999876532222111111113448999999999999999


Q ss_pred             EcCCCeEEEEEcC
Q 041916          204 GHSMGWSSILVPG  216 (359)
Q Consensus       204 ~~~dg~~~i~~~~  216 (359)
                      ++.||.+.+|...
T Consensus       274 ~~~dg~i~iw~~~  286 (379)
T 3jrp_A          274 SGGDNKVTLWKEN  286 (379)
T ss_dssp             EESSSSEEEEEEE
T ss_pred             ecCCCcEEEEeCC
Confidence            8888877777643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-31  Score=241.19  Aligned_cols=206  Identities=14%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCe
Q 041916            9 GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGT   83 (359)
Q Consensus         9 g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~   83 (359)
                      |..+..+.+|... ++++|+|++.+|++|+.||.|++||+.  ++..+..+.+|..+|.+++|+|+  +.+|++|+.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4567788999987 999999999999999999999999998  56778889999999999999987  899999999999


Q ss_pred             EEEEeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceee--Eec---cCCceeEEEcC---
Q 041916           84 VTMWKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVL--QTL---PGHAKTLDFSQ---  151 (359)
Q Consensus        84 v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~---~~~i~~~~~s~---  151 (359)
                      |++||+.++.  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+++....  ..+   ...|.+++|+|   
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            9999999886  67777889999999999999  999999999999999999987432  222   56799999999   


Q ss_pred             ----------Cc--eEEEEcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeC---CCEEEEEcCCCeEEEE
Q 041916          152 ----------KG--LLAVGTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSSIL  213 (359)
Q Consensus       152 ----------~g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~~~i~  213 (359)
                                ++  +++++.|+.|++||+.++...   ...+..|..    .|.+++|+|+   +.+|++++.||.+.+|
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                      46  778889999999998665332   234445544    8999999999   8999999999988888


Q ss_pred             EcCCC
Q 041916          214 VPGSG  218 (359)
Q Consensus       214 ~~~~~  218 (359)
                      ....+
T Consensus       237 d~~~~  241 (379)
T 3jrp_A          237 TQDNE  241 (379)
T ss_dssp             EESST
T ss_pred             eCCCC
Confidence            76554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-30  Score=230.19  Aligned_cols=208  Identities=14%  Similarity=0.177  Sum_probs=177.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-----------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-----------------   61 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------   61 (359)
                      .|+||| .++..+..+.+|... .+++|+|++.+|++++.||.|++||+.+++.+..+. +..                 
T Consensus        55 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           55 SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEe
Confidence            489999 899999999999987 999999999999999999999999999887666554 222                 


Q ss_pred             -------------------------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEE
Q 041916           62 -------------------------------------------RTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-AAPLIK   97 (359)
Q Consensus        62 -------------------------------------------~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-~~~~~~   97 (359)
                                                                 .+.+++|+|++.+|++|+.||.|.+||+.+ ...+..
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  213 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS  213 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE
Confidence                                                       566666777777788888889999999988 677888


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCC------------
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGS------------  161 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~------------  161 (359)
                      +..|.+.|.+++|+|++.+|++++.|+.|++||+++++.+..+  ...+.+++|+|++  +++++.++            
T Consensus       214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (369)
T 3zwl_B          214 IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG  293 (369)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred             EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence            8899999999999999999999999999999999999888877  5678999999999  66666666            


Q ss_pred             --cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          162 --FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       162 --~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        .+++||..++ .....+..|..    .|++++|+|++++|++++.||.+.+|.
T Consensus       294 ~~~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          294 KFEARFYHKIFE-EEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             -CEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cceeEEEecCCC-cchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence              8999997766 56667777755    899999999999999988887666654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.3e-31  Score=239.83  Aligned_cols=215  Identities=12%  Similarity=0.175  Sum_probs=181.1

Q ss_pred             CeEEEe-CCCcEEEEecc-----CCC-eEEEEEecC----CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 041916            1 YPYIYN-RDGTELHCLKE-----HGA-VLKLQFLRN----HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN   69 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~-----h~~-~~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s   69 (359)
                      .|+||| .++..+..+..     |.. +++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  124 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH  124 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence            378999 76777666664     334 499999999    6799999999999999999999999999999999999999


Q ss_pred             C-CCCEEEEEeCCCeEEEEeCCCCcceEEE---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe------
Q 041916           70 P-FNGVVSLGHSGGTVTMWKPTTAAPLIKM---LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT------  139 (359)
Q Consensus        70 p-~~~~l~sg~~dg~v~lwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------  139 (359)
                      | ++.+|++|+.||.|++||+.+++.+..+   ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..      
T Consensus       125 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  204 (366)
T 3k26_A          125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD  204 (366)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence            9 8999999999999999999999988888   68999999999999999999999999999999998654322      


Q ss_pred             -------------------------ccCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCc-------------cceeecc
Q 041916          140 -------------------------LPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHN-------------YSRYMGH  181 (359)
Q Consensus       140 -------------------------~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~  181 (359)
                                               ....|.+++|+++-+++++.|+.|++||+.+....             ...+..|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (366)
T 3k26_A          205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS  284 (366)
T ss_dssp             CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred             ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence                                     24568999999333888889999999997665331             3334444


Q ss_pred             cCCCCcceEEEEEeeC--CCEEEEEcCCCeEEEEEcCCCC
Q 041916          182 SMVKGYQIGKVSFRPY--EDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       182 ~~~~~~~v~~~~~~p~--~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      ..    .|++++|+|+  +.+|++|+.||.+.+|....+.
T Consensus       285 ~~----~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          285 QC----DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             SC----CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             CC----cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            33    7999999999  9999999999888888765543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=4.1e-31  Score=238.16  Aligned_cols=210  Identities=16%  Similarity=0.121  Sum_probs=177.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~   74 (359)
                      +|+||| .++..+..+.+|... .+++|+| ++.+|++|+.||.|++||+.+++.+..+   ..|...|.+++|+|++.+
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK  175 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence            378999 889999999999887 9999999 8999999999999999999999999888   689999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEe----------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKML----------------------------CHQGPVSALAFHPNGHLMATSGKECKI  126 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~----------------------------~h~~~v~~i~~~~~~~~l~~~~~d~~i  126 (359)
                      |++|+.||.|++||+++++....+.                            .|.+.|.+++|+  +.+|++++.|+.|
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i  253 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI  253 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence            9999999999999998775543333                            399999999998  7799999999999


Q ss_pred             EEEEcCCcee--------------eEec---cCCceeEEEcCC--c--eEEEEcCCcEEEEcCCCCCCc---cceeeccc
Q 041916          127 KIWDLRKYEV--------------LQTL---PGHAKTLDFSQK--G--LLAVGTGSFVQILGDFSGSHN---YSRYMGHS  182 (359)
Q Consensus       127 ~iwd~~~~~~--------------~~~~---~~~i~~~~~s~~--g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~  182 (359)
                      ++||++++..              +..+   ...|.+++|+|+  +  +++++.||.|++||+.++...   ...+..|.
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence            9999987643              4444   346899999999  8  666778999999998776322   12444542


Q ss_pred             CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        +...|++++|+|++++|++|+.||.+.+|.
T Consensus       334 --~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          334 --CGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             --CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             --cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence              245899999999999999988888777765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=1.4e-29  Score=225.47  Aligned_cols=207  Identities=13%  Similarity=0.145  Sum_probs=179.6

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      .|++|| .++.  ....+..|... .+++|+|++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++.+|+
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence            378999 6666  56778888876 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                      +++.||.|++||+++++.+..+ .+...+.+++|+|++.+|++++.|+.|++||++++......  ...+.+++|+|++ 
T Consensus       200 ~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred             EEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCC
Confidence            9999999999999998877776 47888999999999999999999999999999988765433  5679999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       +++++.||.|++||+.++. .. ....|..    .|.+++|+|++++|++++.||.+.+|.
T Consensus       279 ~l~~~~~dg~i~~~~~~~~~-~~-~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          279 WFVSTGKDNLLNAWRTPYGA-SI-FQSKESS----SVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCC-EE-EEEECSS----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCcEEEEECCCCe-EE-EEecCCC----cEEEEEECCCCCEEEEecCCCeEEEEE
Confidence             7778889999999987763 33 2233433    899999999999999988888777664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.5e-31  Score=241.85  Aligned_cols=210  Identities=15%  Similarity=0.227  Sum_probs=177.2

Q ss_pred             CeEEEe-CCCc---EEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYN-RDGT---ELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~~g~---~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~   71 (359)
                      +|+||| .++.   .+..+. |.. +++++|+|++.+|++|+.||.|++||+.+    ...+..+..|...|.+++|+|+
T Consensus        46 ~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  124 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK  124 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred             eEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence            478999 5554   444444 544 59999999999999999999999999987    4588889999999999999998


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCc------ceEE---EeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           72 -NGVVSLGHSGGTVTMWKPTTAA------PLIK---MLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        72 -~~~l~sg~~dg~v~lwd~~~~~------~~~~---~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                       +.+|++|+.||.|++||+.++.      ....   +..|.+.|.+++|+|+ +.+|++++.|+.|++||+++++++..+
T Consensus       125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  204 (416)
T 2pm9_A          125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL  204 (416)
T ss_dssp             STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence             8999999999999999999876      3332   3578999999999998 789999999999999999999887776


Q ss_pred             c---------CCceeEEEcCCc---eEEEEcCC---cEEEEcCCCCCCccceee-cccCCCCcceEEEEEee-CCCEEEE
Q 041916          141 P---------GHAKTLDFSQKG---LLAVGTGS---FVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRP-YEDVLGI  203 (359)
Q Consensus       141 ~---------~~i~~~~~s~~g---l~~~~~d~---~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p-~~~~l~~  203 (359)
                      .         ..+.+++|+|++   +++++.|+   .|++||+.++......+. .|..    .|.+++|+| ++.+|++
T Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK----GILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS----CEEEEEECSSCSSCEEE
T ss_pred             eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC----ceeEEEeCCCCCCeEEE
Confidence            2         358999999997   66677777   999999887656666666 6655    899999999 9999999


Q ss_pred             EcCCCeEEEEEc
Q 041916          204 GHSMGWSSILVP  215 (359)
Q Consensus       204 ~~~dg~~~i~~~  215 (359)
                      ++.||.+.+|..
T Consensus       281 ~~~dg~v~~wd~  292 (416)
T 2pm9_A          281 SGRDNTVLLWNP  292 (416)
T ss_dssp             EESSSEEEEECS
T ss_pred             EeCCCCEEEeeC
Confidence            999997776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=3.7e-30  Score=229.60  Aligned_cols=201  Identities=11%  Similarity=0.138  Sum_probs=167.9

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVT   85 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~   85 (359)
                      ..+.+|.+. ++++|+|++.+|++|+.||.|++||+.++    .....+.+|..+|.+++|+|  ++.+|++|+.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789886 99999999999999999999999999876    46778889999999999999  689999999999999


Q ss_pred             EEeCCCC---------cceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee------------------
Q 041916           86 MWKPTTA---------APLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV------------------  136 (359)
Q Consensus        86 lwd~~~~---------~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~------------------  136 (359)
                      +||+.++         .++..+..|.+.|.+++|+|+  +.+|++++.|+.|++||+++++.                  
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999887         457778899999999999999  99999999999999999875431                  


Q ss_pred             ------------------------------------------eEec---cCCceeEEEcCCc------eEEEEcCCcEEE
Q 041916          137 ------------------------------------------LQTL---PGHAKTLDFSQKG------LLAVGTGSFVQI  165 (359)
Q Consensus       137 ------------------------------------------~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i  165 (359)
                                                                +..+   .+.|.+++|+|++      +++++.||.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence                                                      2222   3468999999995      778889999999


Q ss_pred             EcCCCCC---------------------------------------------CccceeecccCCCCcceEEEEEeeCCCE
Q 041916          166 LGDFSGS---------------------------------------------HNYSRYMGHSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       166 ~d~~~~~---------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~  200 (359)
                      ||+..+.                                             ..+..+.+|..    .|++++|+|++++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~  320 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG----EVWSVSWNLTGTI  320 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSS----CEEEEEECSSSCC
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc----cEEEEEEcCCCCE
Confidence            9976531                                             22233444543    8999999999999


Q ss_pred             EEEEcCCCeEEEEEcCC
Q 041916          201 LGIGHSMGWSSILVPGS  217 (359)
Q Consensus       201 l~~~~~dg~~~i~~~~~  217 (359)
                      |++|+.||.+.+|....
T Consensus       321 l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             EEEEETTSCEEEEEECT
T ss_pred             EEEecCCCcEEEEecCc
Confidence            99988888777776543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=4.8e-31  Score=234.20  Aligned_cols=200  Identities=12%  Similarity=0.159  Sum_probs=163.1

Q ss_pred             EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 041916           14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus        14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd   88 (359)
                      .+.+|.+. ++++|+|+|.+||+|+.|++|++||+.++.  ++..+.+|.++|.+++|+|  ++.+|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            45688887 999999999999999999999999998875  4678899999999999986  488999999999999999


Q ss_pred             CCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee---eEec---cCCceeEEEcCC------
Q 041916           89 PTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV---LQTL---PGHAKTLDFSQK------  152 (359)
Q Consensus        89 ~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~i~~~~~s~~------  152 (359)
                      +.++.  ....+.+|.+.|++++|+|+  +.+|++|+.|++|++||++....   ...+   ...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98874  56677899999999999997  88999999999999999987532   2333   346889999997      


Q ss_pred             -----------c--eEEEEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCC----CEEEEEcCCCeEEEE
Q 041916          153 -----------G--LLAVGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 -----------g--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~~i~  213 (359)
                                 +  +++++.|+.|++||+....  .....+.+|..    .|.+++|+|++    .+|++|+.||.+.+|
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~----~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD----WVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS----CEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC----ceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence                       3  6778889999999975442  23445666655    89999999987    789999999888888


Q ss_pred             EcCC
Q 041916          214 VPGS  217 (359)
Q Consensus       214 ~~~~  217 (359)
                      ....
T Consensus       244 ~~~~  247 (316)
T 3bg1_A          244 TCDD  247 (316)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            6543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=6.4e-30  Score=231.09  Aligned_cols=211  Identities=15%  Similarity=0.140  Sum_probs=181.5

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF--RTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~   74 (359)
                      .|+||| .++.  .+..+.+|... ++++|+|++.+|++++.||.|++||+.+++....+  ..|...|.+++|+|++.+
T Consensus        31 ~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  110 (372)
T 1k8k_C           31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK  110 (372)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE
Confidence            378999 6666  88899999887 99999999999999999999999999988755444  568899999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcc---eEEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC------------------
Q 041916           75 VSLGHSGGTVTMWKPTTAAP---LIKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR------------------  132 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~---~~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~------------------  132 (359)
                      |++|+.||.|++||+..+..   ...+ ..|...|++++|+|++.+|++++.|+.|++||++                  
T Consensus       111 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence            99999999999999988764   2333 4789999999999999999999999999999954                  


Q ss_pred             CceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          133 KYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       133 ~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      .+.++..+   .+.+.+++|+|++  +++++.|+.|++||+.++ ..+..+..|..    +|.+++|+|++.+|++| .|
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d  264 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETL----PLLAVTFITESSLVAAG-HD  264 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSC----CEEEEEEEETTEEEEEE-TT
T ss_pred             hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCC----CeEEEEEecCCCEEEEE-eC
Confidence            56777777   4578999999999  778889999999998766 56666776654    89999999999988887 78


Q ss_pred             CeEEEEEcCC
Q 041916          208 GWSSILVPGS  217 (359)
Q Consensus       208 g~~~i~~~~~  217 (359)
                      |.+.+|....
T Consensus       265 ~~i~i~~~~~  274 (372)
T 1k8k_C          265 CFPVLFTYDS  274 (372)
T ss_dssp             SSCEEEEEET
T ss_pred             CeEEEEEccC
Confidence            8888887655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5e-30  Score=232.24  Aligned_cols=188  Identities=10%  Similarity=0.043  Sum_probs=153.1

Q ss_pred             eEEEEEecCCCEEEEE--ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-
Q 041916           21 VLKLQFLRNHFLLASI--NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK-   97 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~-   97 (359)
                      +.+++|||||++|+++  +.|++|+|||+.+++++..+. |.+.|.+++|+|+|.+|++++.++ +.+|+..++..+.. 
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK  213 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee
Confidence            3789999999987654  468999999999999998886 678899999999999999998665 56666666665543 


Q ss_pred             -EeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCcee----eEec---cCCceeEEEcCCc--eEEEEcCCcE
Q 041916           98 -MLCHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEV----LQTL---PGHAKTLDFSQKG--LLAVGTGSFV  163 (359)
Q Consensus        98 -~~~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~----~~~~---~~~i~~~~~s~~g--l~~~~~d~~i  163 (359)
                       ...|...|++++|+|++.++++++.|+    .+++||+.....    ...+   ...|++++|||+|  +++++.|+.|
T Consensus       214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V  293 (365)
T 4h5i_A          214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI  293 (365)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence             346888999999999999999999887    688999887543    2223   4579999999999  6778899999


Q ss_pred             EEEcCCCCCCccce-eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          164 QILGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       164 ~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +|||+.++ .++.. +.+|..    +|++++|+|||++|++|+.|+++++|..
T Consensus       294 ~iwd~~~~-~~~~~~~~gH~~----~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          294 ALVKLKDL-SMSKIFKQAHSF----AITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEETTTT-EEEEEETTSSSS----CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             EEEECCCC-cEEEEecCcccC----CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            99998776 44444 456765    8999999999999999888876666653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=8.9e-30  Score=231.75  Aligned_cols=201  Identities=9%  Similarity=0.033  Sum_probs=171.2

Q ss_pred             CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC-CCCEEEEEeCC
Q 041916            7 RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNP-FNGVVSLGHSG   81 (359)
Q Consensus         7 ~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp-~~~~l~sg~~d   81 (359)
                      ........+.+|... ++++|+|++ .+|++|+.||.|++||+.++.....+.  +|...|.+++|+| ++.+|++|+.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            456677888999887 999999998 999999999999999999888777765  5999999999999 67999999999


Q ss_pred             CeEEEEeCCCCcceEEEecc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916           82 GTVTMWKPTTAAPLIKMLCH---QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--  153 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--  153 (359)
                      |.|++||+.. ..+..+..+   ...|.+++|+|++.+|++++.|+.|++||++ +.++..+   .+.|.+++|+|++  
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence            9999999985 555555544   4789999999999999999999999999995 5666666   4679999999998  


Q ss_pred             -eEEEEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~  214 (359)
                       +++++.|+.|++||+.+..   .....+ .|..    .|.+++|+| ++.+|++++.||.+.+|.
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~----~v~~~~~s~~~~~~l~~~~~d~~i~iwd  279 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK----PVNAAYFNPTDSTKLLTTDQRNEIRVYS  279 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS----CEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC----ceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence             6778889999999987632   222223 4544    899999999 999999999999988875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=3.4e-30  Score=235.22  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=177.9

Q ss_pred             CeEEEe-CCCcE-----EEEeccC------CCeEEEEEe----cCCCE-EEEEecCCeEEEEECCC------CeEEE---
Q 041916            1 YPYIYN-RDGTE-----LHCLKEH------GAVLKLQFL----RNHFL-LASINKFGQLRYQDVTM------GEIVG---   54 (359)
Q Consensus         1 ~v~iwd-~~g~~-----~~~l~~h------~~~~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~---   54 (359)
                      +|++|| .++..     +..+..|      ..+.+++|+    |++.+ |++++.||.|++||+.+      +..+.   
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  171 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  171 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence            488999 66765     8888888      345999999    99999 99999999999999998      66555   


Q ss_pred             --EEe-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec---c---CCCeEEEEEcCCCCEEEE
Q 041916           55 --NFR-------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---H---QGPVSALAFHPNGHLMAT  119 (359)
Q Consensus        55 --~~~-------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~---h---~~~v~~i~~~~~~~~l~~  119 (359)
                        .+.       .|...|.+++|+|++ +|++|+.||.|.+||+++++++..+..   |   ...|.+++|+|++.+|++
T Consensus       172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence              664       488899999999999 999999999999999999999999998   9   999999999999999999


Q ss_pred             EeCC---CeEEEEEcCCceeeEecc----------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee
Q 041916          120 SGKE---CKIKIWDLRKYEVLQTLP----------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       120 ~~~d---~~i~iwd~~~~~~~~~~~----------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~  178 (359)
                      ++.|   +.|++||+++++++..+.                ..|.+++|+|++  +++++.|+.|++||+.++ ..+..+
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~  329 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL  329 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence            9999   999999999988877663                358999999999  777888999999998776 555666


Q ss_pred             e------cc------------cCCCCcceEEEEEeeCC----------CEEEEEcCCCeEEEEEcC
Q 041916          179 M------GH------------SMVKGYQIGKVSFRPYE----------DVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       179 ~------~~------------~~~~~~~v~~~~~~p~~----------~~l~~~~~dg~~~i~~~~  216 (359)
                      .      .|            .. +...|++++|+|++          .+|++|+.||.+.+|...
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          330 NMHCDDIEIEEDILAVDEHGDSL-AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCBC-SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ecccCcccchhhhhccccccccc-cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            5      44            00 13489999999998          688888888777776543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.6e-29  Score=235.95  Aligned_cols=203  Identities=14%  Similarity=0.210  Sum_probs=180.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN--PFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~   76 (359)
                      +|++|| .+++.+..+.+|.+. ++++|+|++ +|++|+.||+|++||+.+++++..+.+|.+.|.+++|+  +++.+|+
T Consensus       143 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          143 MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence            589999 899999999999987 999999988 89999999999999999999999999999999999998  5778999


Q ss_pred             EEeCCCeEEEEeCCCCcc-----------------------eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           77 LGHSGGTVTMWKPTTAAP-----------------------LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~-----------------------~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                      +|+.||.|++||+.++..                       +..+.+|...|.++  ++++.++++++.|+.|++||+++
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~  299 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ  299 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT
T ss_pred             EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999987653                       44566888888877  57889999999999999999999


Q ss_pred             ceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          134 YEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       134 ~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ++++..+   ...|.+++|+|++  +++++.||.|++||+.++ ..+..+.+|..    .|.+++|+  +.+|++|+.||
T Consensus       300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~----~v~~~~~~--~~~l~s~s~dg  372 (464)
T 3v7d_B          300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTA----LVGLLRLS--DKFLVSAAADG  372 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEEC--SSEEEEEETTS
T ss_pred             CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCC----cEEEEEEc--CCEEEEEeCCC
Confidence            9998887   4568999999998  788889999999998776 66677777765    89999997  58999999999


Q ss_pred             eEEEE
Q 041916          209 WSSIL  213 (359)
Q Consensus       209 ~~~i~  213 (359)
                      .+.+|
T Consensus       373 ~v~vw  377 (464)
T 3v7d_B          373 SIRGW  377 (464)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            87775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=5.4e-30  Score=255.09  Aligned_cols=212  Identities=17%  Similarity=0.201  Sum_probs=191.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||| .+|..+..+..|... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  115 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG  115 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE
Confidence            378999 899999999999887 999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcC-
Q 041916           79 HSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQ-  151 (359)
Q Consensus        79 ~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~-  151 (359)
                      +.||.|.+||+.++ .....+.+|...|.+++|+| ++.+|++++.||+|++||+.++.+...+    ...+.+++|+| 
T Consensus       116 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (814)
T 3mkq_A          116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL  195 (814)
T ss_dssp             ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS
T ss_pred             cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC
Confidence            99999999999887 56677889999999999999 8999999999999999999988766655    26789999999 


Q ss_pred             -Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          152 -KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       152 -~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                       ++  +++++.||.|++||+.++ .....+..|..    .|.+++|+|++.+|++|+.||.+.+|....
T Consensus       196 ~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          196 PDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             TTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence             77  777788999999998765 55666666655    899999999999999999999988887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=232.83  Aligned_cols=213  Identities=16%  Similarity=0.166  Sum_probs=178.0

Q ss_pred             CeEEEe-CCCcEEEEe-ccCCCe-EEEEEecC---CCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEE-----
Q 041916            1 YPYIYN-RDGTELHCL-KEHGAV-LKLQFLRN---HFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRV-----   68 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l-~~h~~~-~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~-----   68 (359)
                      +|+||| .++...... .+|... .+++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|     
T Consensus        45 ~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  124 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG  124 (357)
T ss_dssp             EEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred             EEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence            378999 777765433 256655 99999998   6999999999999999999988 88999999999999954     


Q ss_pred             -cCCCCEEEEEeCCCeEEEEeCCCCc-ceEEEeccCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916           69 -NPFNGVVSLGHSGGTVTMWKPTTAA-PLIKMLCHQG----PVSALA----FHPNGHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        69 -sp~~~~l~sg~~dg~v~lwd~~~~~-~~~~~~~h~~----~v~~i~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                       +|++.+|++|+.||.|++||+.++. ++..+..|.+    .|.+++    |+|++.+|++++.|+.|++||+++++...
T Consensus       125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (357)
T 3i2n_A          125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW  204 (357)
T ss_dssp             CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence             7889999999999999999999887 7788876665    799998    78899999999999999999999988755


Q ss_pred             ec--cCCceeEEEcC---Cc--eEEEEcCCcEEEEcCCCCCCccceee-----cccCCCCcceEEEEEeeCCC-EEEEEc
Q 041916          139 TL--PGHAKTLDFSQ---KG--LLAVGTGSFVQILGDFSGSHNYSRYM-----GHSMVKGYQIGKVSFRPYED-VLGIGH  205 (359)
Q Consensus       139 ~~--~~~i~~~~~s~---~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~-~l~~~~  205 (359)
                      ..  ...+.+++|+|   ++  +++++.||.|++||+.++ .....+.     .|..    .|++++|+|++. +|++|+
T Consensus       205 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKS----TVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSS----CEEEEEEETTEEEEEEEEE
T ss_pred             ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcC----CEEEEEECCCCCcEEEEEe
Confidence            54  67899999999   77  778889999999997665 3444333     5544    899999999998 899999


Q ss_pred             CCCeEEEEEcCCC
Q 041916          206 SMGWSSILVPGSG  218 (359)
Q Consensus       206 ~dg~~~i~~~~~~  218 (359)
                      .||.+.+|.....
T Consensus       280 ~dg~i~iwd~~~~  292 (357)
T 3i2n_A          280 GAGGLHLWKYEYP  292 (357)
T ss_dssp             TTSEEEEEEEECC
T ss_pred             CCCcEEEeecCCC
Confidence            9998888876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=221.76  Aligned_cols=209  Identities=16%  Similarity=0.217  Sum_probs=172.3

Q ss_pred             CeEEEe-CCCcEEEEec--cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------------------
Q 041916            1 YPYIYN-RDGTELHCLK--EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-------------------   57 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~--~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------   57 (359)
                      +|+||| .+|+++..+.  +|... ++++|+|++++|++|+.||+|++||+.+++++..+.                   
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~  125 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG  125 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEE
Confidence            489999 8999888775  55554 999999999999999999999999999887665533                   


Q ss_pred             ----------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----eEEEeccCCCeEEEEEc
Q 041916           58 ----------------------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP----LIKMLCHQGPVSALAFH  111 (359)
Q Consensus        58 ----------------------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~----~~~~~~h~~~v~~i~~~  111 (359)
                                            +|...+.+++|++++.+|++++.||.|++||+.+++.    ......|.+.|.+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~  205 (318)
T 4ggc_A          126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC  205 (318)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred             ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence                                  4556677888999999999999999999999987653    44556788899999999


Q ss_pred             CCCCE-E--EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeeccc
Q 041916          112 PNGHL-M--ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHS  182 (359)
Q Consensus       112 ~~~~~-l--~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~  182 (359)
                      |++.. +  ++++.+++|++||.+........  ...+..+.|+|++  +++++  .|+.|++||+.++ ..+..+.+|.
T Consensus       206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~  284 (318)
T 4ggc_A          206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHT  284 (318)
T ss_dssp             TTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCS
T ss_pred             CCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCC
Confidence            96653 3  45667899999999988776655  5678999999998  55544  6899999998776 6777888886


Q ss_pred             CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .    .|++++|+|++.+|++|+.||.+++|.
T Consensus       285 ~----~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          285 S----RVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             S----CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             C----CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            6    899999999999999988887666664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.9e-29  Score=231.30  Aligned_cols=211  Identities=18%  Similarity=0.224  Sum_probs=179.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .|+||| .++..+..+.+|... .+++|+  +.+|++|+.||.|++||+. .+..+..+..|.+.|.+++|+|++.+|++
T Consensus       157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  234 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS  234 (401)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence            489999 889999999999887 999994  5799999999999999998 56678889999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCceeeEec--cCCceeEEEcCC
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSG--KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQK  152 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~  152 (359)
                      |+.||.|++||+.++.++..+..|...|.+++|+|++. ++++++  .|+.|++||+++++++..+  ...+.+++|+|+
T Consensus       235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~  314 (401)
T 4aez_A          235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH  314 (401)
T ss_dssp             EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred             EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC
Confidence            99999999999999999999999999999999999764 566655  6999999999999988877  567999999999


Q ss_pred             c--eEEEE--cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          153 G--LLAVG--TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       153 g--l~~~~--~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +  +++++  .||.|++||+.++.. ....+.+|..    .|.+++|+|++.+|++++.||.+.+|....
T Consensus       315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT----RVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS----CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9  55543  689999999766421 1223445544    899999999999999988887766665443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=8.4e-30  Score=231.92  Aligned_cols=207  Identities=15%  Similarity=0.163  Sum_probs=168.3

Q ss_pred             CeEEEeCCCcEEEEeccCC---C-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916            1 YPYIYNRDGTELHCLKEHG---A-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV   75 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~---~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l   75 (359)
                      +|++||..+..+..+..|.   . +.+++|+|++.+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|++. +|
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l  220 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM  220 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence            3789995567777776654   4 499999999999999999999999999 5888999999999999999999998 99


Q ss_pred             EEEeCCCeEEEEeCCC----CcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc---------
Q 041916           76 SLGHSGGTVTMWKPTT----AAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP---------  141 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~----~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------  141 (359)
                      ++|+.||.|++||+++    +.++..+ .|.+.|++++|+| ++.+|++++.|+.|++||++++..+..+.         
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  299 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH  299 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred             EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence            9999999999999987    4455555 7999999999999 99999999999999999999876544441         


Q ss_pred             -----------CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          142 -----------GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       142 -----------~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                                 +.+..++|+|+| + +++.|+.|++||+.++ ..+..+..+.  +...+..++|+|++.+|++|+ ||.
T Consensus       300 ~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~-~~~~~l~~~~--~~~~~~~~~~s~~g~~l~s~s-d~~  374 (383)
T 3ei3_B          300 LTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSG-GLVHQLRDPN--AAGIISLNKFSPTGDVLASGM-GFN  374 (383)
T ss_dssp             SCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTC-CEEEEECBTT--BCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred             ccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCC-ceeeeecCCC--CCceEEEEEEecCccEEEEec-CCc
Confidence                       122335555555 4 5567899999998776 5566666542  233678889999999998885 776


Q ss_pred             EEEEE
Q 041916          210 SSILV  214 (359)
Q Consensus       210 ~~i~~  214 (359)
                      +.+|.
T Consensus       375 i~iw~  379 (383)
T 3ei3_B          375 ILIWN  379 (383)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.1e-29  Score=235.17  Aligned_cols=213  Identities=15%  Similarity=0.181  Sum_probs=174.0

Q ss_pred             CeEEEe-CC----------CcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeE-------EEEEecCC
Q 041916            1 YPYIYN-RD----------GTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEI-------VGNFRTGL   60 (359)
Q Consensus         1 ~v~iwd-~~----------g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~   60 (359)
                      .|+||| .+          +..+..+.+|... ++++|+|++. +|++|+.||.|++||+.++..       ...+..|.
T Consensus       152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~  231 (430)
T 2xyi_A          152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT  231 (430)
T ss_dssp             CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred             cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence            488999 44          5678888999887 9999999987 999999999999999987422       45677899


Q ss_pred             CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCC-c
Q 041916           61 GRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRK-Y  134 (359)
Q Consensus        61 ~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~-~  134 (359)
                      ..|.+++|+| ++.+|++++.||.|++||++++   .++..+..|...|++++|+|++. +|++|+.||.|++||+++ .
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~  311 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK  311 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence            9999999999 6789999999999999999987   57788889999999999999887 689999999999999998 4


Q ss_pred             eeeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc----------cceeecccCCCCcceEEEEEeeCC
Q 041916          135 EVLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN----------YSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       135 ~~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      .++..+   .+.|.+++|+|++   +++++.|+.|++||+......          ...+..+.. +...|.+++|+|++
T Consensus       312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~  390 (430)
T 2xyi_A          312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNE  390 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-CSSCEEEEEECSSS
T ss_pred             CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC-CCCCceEEEECCCC
Confidence            556655   5679999999988   667788999999998663211          122223322 34489999999999


Q ss_pred             C-EEEEEcCCCeEEEEE
Q 041916          199 D-VLGIGHSMGWSSILV  214 (359)
Q Consensus       199 ~-~l~~~~~dg~~~i~~  214 (359)
                      . +|++++.||.+.+|.
T Consensus       391 ~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          391 PWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             TTEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCEEEeE
Confidence            8 777777766555554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=226.87  Aligned_cols=201  Identities=16%  Similarity=0.180  Sum_probs=178.2

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      ....+.+|... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            45678899987 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCcee-----------eEec---cC--CceeEE
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYEV-----------LQTL---PG--HAKTLD  148 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~-----------~~~~---~~--~i~~~~  148 (359)
                      .+++.+..+. +...|.+++|+|++.+|++++.+     +.|.+||+.....           +..+   .+  .+.+++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            9999888887 88999999999999999999999     9999999976532           1111   22  789999


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      |+|++  +++++.||.|++||+.+.......+..|..    .|.+++|+|++.+|++++.||.+.+|...
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            99999  777888999999998775566677777755    89999999999999999999988887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=2.5e-29  Score=261.32  Aligned_cols=209  Identities=15%  Similarity=0.216  Sum_probs=184.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~   76 (359)
                      +|+||| .++..+..+.+|... ++++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|  ++.+++
T Consensus       638 ~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  717 (1249)
T 3sfz_A          638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA  717 (1249)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence            589999 899999999999987 9999999999999999999999999999999999999999999999999  456899


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----------------
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----------------  140 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------  140 (359)
                      +|+.||.|++||+.++.++..+.+|.+.|++++|+|++.+|++++.||+|++||++++.....+                
T Consensus       718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV  797 (1249)
T ss_dssp             EEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred             EEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999876543221                


Q ss_pred             ------------------------------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc
Q 041916          141 ------------------------------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS  176 (359)
Q Consensus       141 ------------------------------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~  176 (359)
                                                                .+.+.+++|+|++  +++++.++.|++||+.++ ....
T Consensus       798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~  876 (1249)
T 3sfz_A          798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVA  876 (1249)
T ss_dssp             CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEE
T ss_pred             cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceee
Confidence                                                      2346778888888  666677888999987665 5556


Q ss_pred             eeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       177 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+.+|..    .|++++|+|++.+|++++.||.+.+|.
T Consensus       877 ~~~~h~~----~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          877 DCRGHLS----WVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             EECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ecCCCcc----ceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            6666655    899999999999999999999888774

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=232.00  Aligned_cols=210  Identities=12%  Similarity=0.164  Sum_probs=186.8

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC---------------eE
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR---------------TD   64 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~   64 (359)
                      .|+|||.++..+..+..|... .+++|+|++.+|++++.|+.|++||+.+++.+..+..+...               +.
T Consensus       131 ~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (425)
T 1r5m_A          131 ELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV  210 (425)
T ss_dssp             CEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred             eEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence            489999889999999999887 99999999999999999999999999999999999888776               99


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---c
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---P  141 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~  141 (359)
                      +++|+|++ .+++++.||.|.+||+.++.++..+..|...|.+++|+|++.+|++++.|+.|++||+++++++..+   .
T Consensus       211 ~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  289 (425)
T 1r5m_A          211 DVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS  289 (425)
T ss_dssp             CCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS
T ss_pred             EEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC
Confidence            99999975 5888999999999999999999999999999999999999999999999999999999998877776   4


Q ss_pred             CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          142 GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       142 ~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      ..+.+++|+|++ +++++.|+.|++||+.++ .....+..|..    .|.+++|+|++.+|++++.||.+.+|...
T Consensus       290 ~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          290 QSIVSASWVGDDKVISCSMDGSVRLWSLKQN-TLLALSIVDGV----PIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             SCEEEEEEETTTEEEEEETTSEEEEEETTTT-EEEEEEECTTC----CEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             ccEEEEEECCCCEEEEEeCCCcEEEEECCCC-cEeEecccCCc----cEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            578999999999 888899999999998766 55666666654    89999999999999999988877777653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.7e-29  Score=251.57  Aligned_cols=216  Identities=10%  Similarity=0.136  Sum_probs=188.6

Q ss_pred             EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      ..+.+.+|.+. ++++|+|++.+|++|+.||.|++||+.++..+..+..|.++|.+++|+|++.+|++|+.||.|.+||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            45778889886 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcC-Cc--eEEEEcCCc
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQ-KG--LLAVGTGSF  162 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~-~g--l~~~~~d~~  162 (359)
                      .+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++ .....+   .+.+.+++|+| ++  +++++.||.
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999986 555555   46799999999 66  778889999


Q ss_pred             EEEEcCCCCCCccceeecccCCCCcceEEEEEee--CCCEEEEEcCCCeEEE----------------------------
Q 041916          163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSSI----------------------------  212 (359)
Q Consensus       163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~~~i----------------------------  212 (359)
                      |++||+..+ .....+..+   +...+.+++|+|  ++.+|++|+.+|.+.+                            
T Consensus       165 v~vwd~~~~-~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  240 (814)
T 3mkq_A          165 VKVWSLGQS-TPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL  240 (814)
T ss_dssp             EEEEETTCS-SCSEEEECC---CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred             EEEEECCCC-cceeEEecC---CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            999998665 344444444   223799999999  9999999999996655                            


Q ss_pred             --EEcCCCCCccccccCCCc
Q 041916          213 --LVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       213 --~~~~~~d~~~~~~~~~~~  230 (359)
                        +++++.|+.+++|+....
T Consensus       241 ~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          241 PIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             SEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEeCCCeEEEEECCCC
Confidence              355666888888887643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=227.06  Aligned_cols=196  Identities=14%  Similarity=0.172  Sum_probs=167.6

Q ss_pred             CCCcEEEEeccCCCe-EEEEEecC---CCEEEEEecCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            7 RDGTELHCLKEHGAV-LKLQFLRN---HFLLASINKFGQLRYQDVTM-GEIV-GNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         7 ~~g~~~~~l~~h~~~-~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      .....+..+.+|.+. ++++|+|+   |.+|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++.+|++|+.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            345567888899887 99999999   69999999999999999997 5554 788899999999999999999999999


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCceeeEe-------------------
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAF--HPNGHLMATSGKECKIKIWDLRKYEVLQT-------------------  139 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------------  139 (359)
                      ||.|++||+.++..+. +..|...|++++|  +|++.+|++++.|+.|++||+++++++..                   
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            9999999999887665 5679999999999  89999999999999999999976532110                   


Q ss_pred             -----------------------------------------------------------------------cc---C---
Q 041916          140 -----------------------------------------------------------------------LP---G---  142 (359)
Q Consensus       140 -----------------------------------------------------------------------~~---~---  142 (359)
                                                                                             +.   .   
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence                                                                                   00   0   


Q ss_pred             ---------CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          143 ---------HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       143 ---------~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                               .|.+++|+|++  +++++.||.|++||+.++ ..+..+..|..    +|++++|+|++.+|++|+.|+
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~----~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQ----PISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSS----CEEEEEECTTSSCEEEEECCC
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCC----CceEEEECCCCCeEEEEeccc
Confidence                     48899999999  788889999999998766 56666666655    899999999999999998876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=9.9e-30  Score=232.14  Aligned_cols=212  Identities=15%  Similarity=0.138  Sum_probs=182.2

Q ss_pred             CeEEEe-CCCc------EEEEeccCCCe-EEEEEecC----C---CEEEEEecCCeEEEEECCCCeE-----EEEEecC-
Q 041916            1 YPYIYN-RDGT------ELHCLKEHGAV-LKLQFLRN----H---FLLASINKFGQLRYQDVTMGEI-----VGNFRTG-   59 (359)
Q Consensus         1 ~v~iwd-~~g~------~~~~l~~h~~~-~~l~~s~~----~---~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~-   59 (359)
                      +|+||| .++.      .+..+.+|... ++++|+|+    +   .+|++++.||.|++||+.++..     +..+..| 
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  116 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD  116 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC
T ss_pred             EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc
Confidence            489999 6666      68888899887 99999999    9   9999999999999999998886     8888888 


Q ss_pred             ----CCCeEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CcceE-----EEe-------ccCCCeEEEEEcC
Q 041916           60 ----LGRTDVMRVN----PFNGV-VSLGHSGGTVTMWKPTT------AAPLI-----KML-------CHQGPVSALAFHP  112 (359)
Q Consensus        60 ----~~~v~~~~~s----p~~~~-l~sg~~dg~v~lwd~~~------~~~~~-----~~~-------~h~~~v~~i~~~~  112 (359)
                          ...|.+++|+    |++.+ |++|+.||.|++||+.+      +..+.     .+.       .|...|.+++|+|
T Consensus       117 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  196 (397)
T 1sq9_A          117 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE  196 (397)
T ss_dssp             TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred             cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence                5899999999    99999 99999999999999998      66666     774       4889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeEecc---------CCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCcccee
Q 041916          113 NGHLMATSGKECKIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRY  178 (359)
Q Consensus       113 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~  178 (359)
                      ++ +|++++.|+.|++||+++++++..+.         ..+.+++|+|++  +++++.|   +.|++||+.++ ..+..+
T Consensus       197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~  274 (397)
T 1sq9_A          197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSL  274 (397)
T ss_dssp             TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEE
T ss_pred             Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-ccccee
Confidence            99 99999999999999999998877663         358999999999  7777788   99999998766 556666


Q ss_pred             ec-------------ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          179 MG-------------HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       179 ~~-------------~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      ..             |..    .|.+++|+|++.+|++++.||.+.+|....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          275 SVPTHSSQASLGEFAHSS----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             CBC--------CCBSBSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccCcccccccccccccCC----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            66             655    8999999999999999999998888876443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=233.88  Aligned_cols=216  Identities=11%  Similarity=0.158  Sum_probs=173.0

Q ss_pred             CeEEEe-CCCc-----------EEEEeccCC------------Ce-EEEEEecCC--CEEEEEecCCeEEEEECCCCeEE
Q 041916            1 YPYIYN-RDGT-----------ELHCLKEHG------------AV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGEIV   53 (359)
Q Consensus         1 ~v~iwd-~~g~-----------~~~~l~~h~------------~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~   53 (359)
                      .|+||| .++.           .+..+.+|.            .. ++++|+|++  .+|++++.|++|++||+.++...
T Consensus        51 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~  130 (447)
T 3dw8_B           51 RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR  130 (447)
T ss_dssp             EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEE
T ss_pred             eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCC
Confidence            378999 6665           578899996            55 999999998  79999999999999999764432


Q ss_pred             ---------------------------------------EE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 041916           54 ---------------------------------------GN-FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-   92 (359)
Q Consensus        54 ---------------------------------------~~-~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-   92 (359)
                                                             .. ..+|...|.+++|+|++.+|++| .||.|++||+.+. 
T Consensus       131 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~  209 (447)
T 3dw8_B          131 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD  209 (447)
T ss_dssp             EECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE
T ss_pred             cceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC
Confidence                                                   12 35799999999999999999998 7999999999843 


Q ss_pred             cceE-------EEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCcee----eEecc---C------------Cce
Q 041916           93 APLI-------KMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEV----LQTLP---G------------HAK  145 (359)
Q Consensus        93 ~~~~-------~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~---~------------~i~  145 (359)
                      ..+.       .+.+|...|++++|+|++ .+|++|+.|+.|++||++++..    +..+.   .            .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  289 (447)
T 3dw8_B          210 RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS  289 (447)
T ss_dssp             EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEE
T ss_pred             ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEE
Confidence            3333       245899999999999998 9999999999999999999876    55552   2            789


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCC-----------cceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKG-----------YQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      +++|+|+|  +++++. +.|++||+.....++..+..|.....           ..+..++|+|++.+|++|+.||.+.+
T Consensus       290 ~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~i  368 (447)
T 3dw8_B          290 DVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRM  368 (447)
T ss_dssp             EEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEE
T ss_pred             EEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEE
Confidence            99999999  455555 99999998774577777777742000           01334999999999999999998888


Q ss_pred             EEcCCC
Q 041916          213 LVPGSG  218 (359)
Q Consensus       213 ~~~~~~  218 (359)
                      |....+
T Consensus       369 wd~~~~  374 (447)
T 3dw8_B          369 FDRNTK  374 (447)
T ss_dssp             EETTTC
T ss_pred             EEcCCC
Confidence            876554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-30  Score=242.11  Aligned_cols=168  Identities=14%  Similarity=0.047  Sum_probs=144.8

Q ss_pred             CeEEEe-CCCcE-----------EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEE
Q 041916            1 YPYIYN-RDGTE-----------LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVM   66 (359)
Q Consensus         1 ~v~iwd-~~g~~-----------~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~   66 (359)
                      +|+||| .++..           ...+.+|... ++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++
T Consensus       236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            589999 54431           2467888876 999999864 89999999999999999774 456788999999999


Q ss_pred             --EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-
Q 041916           67 --RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-  140 (359)
Q Consensus        67 --~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-  140 (359)
                        +|+|++ .+|++|+.||+|+|||+++++++..+.+|..  .|.+++|+|++..+++++.|++|++||++++.++..+ 
T Consensus       315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~  394 (524)
T 2j04_B          315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV  394 (524)
T ss_dssp             EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred             EEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence              578887 8999999999999999999888877777753  5889999999999999999999999999998876655 


Q ss_pred             --cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916          141 --PGHAKTLDFSQKG--LLAVGTGSFVQILGDF  169 (359)
Q Consensus       141 --~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~  169 (359)
                        .+.|.+++|||+|  +++++.|++|++||+.
T Consensus       395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             ECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             cCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence              5689999999999  8889999999999854

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=5.7e-29  Score=224.88  Aligned_cols=211  Identities=13%  Similarity=0.065  Sum_probs=172.7

Q ss_pred             CeEEEe-CCCcEEEE--eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEE-EecCCCCeEEEEEcCCC
Q 041916            1 YPYIYN-RDGTELHC--LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGN-FRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~--l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~-~~~~~~~v~~~~~sp~~   72 (359)
                      .|++|| .++.....  +..|... .+++|+|++.+|++++.|+.|++||+..+..   ... ...|...|.+++|+|++
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            488999 67764433  4567765 9999999999999999999999999988762   333 35688999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCC------------------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           73 GVVSLGHSGGTVTMWKPT------------------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      .+|++|+.||.|++||+.                  .+.++..+..|.+.|.+++|+|++.+|++++.|+.|++||++++
T Consensus       155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999999953                  56778888899999999999999999999999999999999999


Q ss_pred             eeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCC--CC-------------------------------Cc---
Q 041916          135 EVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFS--GS-------------------------------HN---  174 (359)
Q Consensus       135 ~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~--~~-------------------------------~~---  174 (359)
                      +++..+   ...+.+++|+|++ +++++.|+.|++|++..  +.                               ..   
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  314 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence            888877   3478999999999 77778999999999766  20                               00   


Q ss_pred             ----cceeecccCCCCcceEEEEEe-eCC---CEEEEEcCCCeEEEEEc
Q 041916          175 ----YSRYMGHSMVKGYQIGKVSFR-PYE---DVLGIGHSMGWSSILVP  215 (359)
Q Consensus       175 ----~~~~~~~~~~~~~~v~~~~~~-p~~---~~l~~~~~dg~~~i~~~  215 (359)
                          .....+|.    .+|++++|+ ++|   .+|++|+.||.+.+|..
T Consensus       315 ~~~~~~~~~~h~----~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          315 AAAGAGLDSLHK----NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             ----CCCSSSSS----SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cccccccccccc----CCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                11112444    489999977 555   88988888876666653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=9.4e-30  Score=235.85  Aligned_cols=204  Identities=10%  Similarity=0.004  Sum_probs=163.3

Q ss_pred             EEeccCCC-eEEEEEec-CCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 041916           13 HCLKEHGA-VLKLQFLR-NHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        13 ~~l~~h~~-~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lw   87 (359)
                      .....|.. ++||+|+| ++.+||+|+.||.|+|||+.++..  ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            34455666 49999999 568999999999999999987754  445568999999999998 67899999999999999


Q ss_pred             eCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc---eEEEEc
Q 041916           88 KPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG---LLAVGT  159 (359)
Q Consensus        88 d~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g---l~~~~~  159 (359)
                      |++++.......  .+...+.+++|+|++.+|++|+.||.|++||++. +.+..+   ...|.+++|+|++   +++++.
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence            998654333332  2344678999999999999999999999999975 444455   4579999999987   556788


Q ss_pred             CCcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916          160 GSFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN  221 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~  221 (359)
                      |+.|++||+.+.....  ....+|..    .|++++|+|+|.+|++|+.||.+.+|....++..
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRH----PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSS----CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             cceeeEEecccccccceEEEeeeccc----cccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence            9999999987653222  22234543    8999999999999999999999999987665443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.5e-28  Score=227.62  Aligned_cols=202  Identities=15%  Similarity=0.249  Sum_probs=179.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|| .+++.+..+.+|... .+++|  ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++  .++++|
T Consensus       154 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~  229 (435)
T 1p22_A          154 TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTC  229 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEE
T ss_pred             eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEe
Confidence            489999 899999999999987 99988  788999999999999999999999999999999999999975  599999


Q ss_pred             eCCCeEEEEeCCCCcce---EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC
Q 041916           79 HSGGTVTMWKPTTAAPL---IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK  152 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~  152 (359)
                      +.||.|++||+.++...   ..+.+|.+.|.+++|  ++++|++|+.||.|++||+++++++..+   ...+.+++|++.
T Consensus       230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  307 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR  307 (435)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC
Confidence            99999999999988765   567799999999999  7889999999999999999999988887   356889999654


Q ss_pred             ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      -+++++.||.|++||+.++ ..+..+.+|..    .|.+++|  ++.+|++|+.||.+.+|..
T Consensus       308 ~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~----~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          308 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EEEEEeCCCeEEEEECCCC-CEEEEEeCCcC----cEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            4888999999999998776 56677777765    8999998  7889999999998877654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=217.41  Aligned_cols=206  Identities=14%  Similarity=0.162  Sum_probs=177.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      +|++|| .++.....+..|... .+++|+|++.+|++++.||.|++|++...   +.+..+..|...|.+++|  ++.++
T Consensus        40 ~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l  117 (313)
T 3odt_A           40 TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV  117 (313)
T ss_dssp             EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred             cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence            489999 888888889998887 99999999999999999999999998754   567788899999999999  56799


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFS  150 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s  150 (359)
                      ++|+.||.|++||  .+..+..+..|...|.+++|+| ++.++++++.|+.|++||..  ..+..+    ...+.+++|+
T Consensus       118 ~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~  193 (313)
T 3odt_A          118 ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVV  193 (313)
T ss_dssp             EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEE
T ss_pred             EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEc
Confidence            9999999999999  6777888889999999999998 99999999999999999944  444444    4578999999


Q ss_pred             CCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      |++ +++++.|+.|++||+.++ ..+..+..|..    .|++++|+|++ .|++++.||.+.+|....+
T Consensus       194 ~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          194 DDGHFISCSNDGLIKLVDMHTG-DVLRTYEGHES----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             CCCeEEEccCCCeEEEEECCch-hhhhhhhcCCc----eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            999 889999999999998766 56667777755    89999999999 5888888887777764433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-29  Score=229.76  Aligned_cols=221  Identities=14%  Similarity=0.189  Sum_probs=177.0

Q ss_pred             EEEe-CCCcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEEC----CCCe------EEEEEec----------C
Q 041916            3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDV----TMGE------IVGNFRT----------G   59 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~   59 (359)
                      .+|+ ...........|.+. ++++|+|++. +||+|+.||.|++||+    .+++      ....+..          |
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (425)
T 1r5m_A           28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT  107 (425)
T ss_dssp             ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred             ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence            4566 333333333344454 9999999999 9999999999999999    8888      4555554          6


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      .+.|.+++|+|++.+|++|+.||.|.+|| .++..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus       108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            77999999999999999999999999999 66788888999999999999999999999999999999999999988877


Q ss_pred             cc---CC---------------ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE
Q 041916          140 LP---GH---------------AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       140 ~~---~~---------------i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  200 (359)
                      +.   ..               +.+++|+|++ +++++.++.|++||+.++ .....+..|..    .|.+++|+|++.+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~  261 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TPTGKLIGHHG----PISVLEFNDTNKL  261 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-SCSEEECCCSS----CEEEEEEETTTTE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-ceeeeeccCCC----ceEEEEECCCCCE
Confidence            72   23               8999999999 888889999999998766 56666666655    8999999999999


Q ss_pred             EEEEcCCCeEEE-----------------------------EEcCCCCCccccccCCC
Q 041916          201 LGIGHSMGWSSI-----------------------------LVPGSGEPNFDSWVANP  229 (359)
Q Consensus       201 l~~~~~dg~~~i-----------------------------~~~~~~d~~~~~~~~~~  229 (359)
                      |++++.||.+.+                             +++++.++.+++|++..
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred             EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence            999999996655                             35556677778887653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9e-31  Score=237.62  Aligned_cols=197  Identities=12%  Similarity=0.120  Sum_probs=158.6

Q ss_pred             CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-
Q 041916           18 HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA-   93 (359)
Q Consensus        18 h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~-   93 (359)
                      +.+ +++++|+|++.+|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++. 
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            444 499999999999999999999999999988  7788899999999999999999999999999999999999877 


Q ss_pred             --ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEec----cCCceeEEEcCCc--eEEEEcCCc
Q 041916           94 --PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTL----PGHAKTLDFSQKG--LLAVGTGSF  162 (359)
Q Consensus        94 --~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~i~~~~~s~~g--l~~~~~d~~  162 (359)
                        +...+..|...|++++|+|++++|++++.|+.|++||++++..   ...+    .+.|.+++|+|++  +++++.|+.
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence              6777789999999999999999999999999999999998763   4444    4568999999999  778889999


Q ss_pred             EEEEcCCCCC-----------------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          163 VQILGDFSGS-----------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       163 i~i~d~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      |++||+....                 .....+ .|    ...|.+++|+|++.+|++|+.||.+.+|....+.
T Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS----GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC----SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEEEEEEecccCCCccccccccccchhhhhhcc-cC----CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            9999975321                 122223 44    3489999999999999999888877776655443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=225.87  Aligned_cols=214  Identities=20%  Similarity=0.268  Sum_probs=174.9

Q ss_pred             CeEEEe-CCCcEEEEec-------------cCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE
Q 041916            1 YPYIYN-RDGTELHCLK-------------EHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~-------------~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~   64 (359)
                      +|+||| .++.....+.             +|... .+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.
T Consensus        67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~  145 (408)
T 4a11_B           67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVY  145 (408)
T ss_dssp             CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred             eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCcee
Confidence            488999 6655433332             47766 9999999 77899999999999999999999888877 678899


Q ss_pred             EEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce-eeEe
Q 041916           65 VMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYE-VLQT  139 (359)
Q Consensus        65 ~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~  139 (359)
                      +++|+|.+   .++++|+.||.|.+||+.++..+..+..|.+.|++++|+|++. +|++++.||.|++||++++. ++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~  225 (408)
T 4a11_B          146 SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT  225 (408)
T ss_dssp             EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred             eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence            99999854   4999999999999999999999999999999999999999998 58999999999999998764 2222


Q ss_pred             c------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc-------------------------
Q 041916          140 L------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN-------------------------  174 (359)
Q Consensus       140 ~------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~-------------------------  174 (359)
                      +                  .+.|.+++|+|++  +++++.||.|++||+.++...                         
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (408)
T 4a11_B          226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS  305 (408)
T ss_dssp             CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred             ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence            1                  3568999999999  778889999999998764321                         


Q ss_pred             ---------------------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          175 ---------------------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       175 ---------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                                           +..+.+|    ...|++++|+|++.+|++|+.||.+.+|......
T Consensus       306 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          306 EFVFVPYGSTIAVYTVYSGEQITMLKGH----YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CEEEEEETTEEEEEETTTCCEEEEECCC----SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             eEEEEecCCEEEEEECcCCcceeeeccC----CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence                                 1122334    3489999999999999999999988887765543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.8e-29  Score=230.87  Aligned_cols=209  Identities=10%  Similarity=0.039  Sum_probs=158.1

Q ss_pred             CeEEEe-CCCcEE-----EEeccCCCe-EEEEEec--------CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE
Q 041916            1 YPYIYN-RDGTEL-----HCLKEHGAV-LKLQFLR--------NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV   65 (359)
Q Consensus         1 ~v~iwd-~~g~~~-----~~l~~h~~~-~~l~~s~--------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~   65 (359)
                      +|+||| .++...     ..+.+|.+. ++++|+|        |+++||||+.|++|+|||+.++.++..+..|..+|.+
T Consensus       112 ~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~  191 (393)
T 4gq1_A          112 TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGIS  191 (393)
T ss_dssp             CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEE
T ss_pred             cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEE
Confidence            589999 666543     346789886 9999998        7899999999999999999999888888889999999


Q ss_pred             EEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEE-------------------------EeccCCCeEEEEEc-CCCCEEE
Q 041916           66 MRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIK-------------------------MLCHQGPVSALAFH-PNGHLMA  118 (359)
Q Consensus        66 ~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~-------------------------~~~h~~~v~~i~~~-~~~~~l~  118 (359)
                      ++|+|++ .+|++|+.||+|++||+.+++....                         ..+|...|.++.|+ |+|..|+
T Consensus       192 v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~  271 (393)
T 4gq1_A          192 VQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL  271 (393)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred             EEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence            9999987 5899999999999999987654322                         23577788999987 7999999


Q ss_pred             EEeCCCeEEEEEcCCceeeEecc---------------------CCceeEEEcCC--c-eEE-EEcCCcEEEEcCCCCCC
Q 041916          119 TSGKECKIKIWDLRKYEVLQTLP---------------------GHAKTLDFSQK--G-LLA-VGTGSFVQILGDFSGSH  173 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~~~~~~~---------------------~~i~~~~~s~~--g-l~~-~~~d~~i~i~d~~~~~~  173 (359)
                      +++.|+++++||+..+.....+.                     .......|+|.  + +++ ++.||.|++||..++ .
T Consensus       272 s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~  350 (393)
T 4gq1_A          272 AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-D  350 (393)
T ss_dssp             EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-T
T ss_pred             EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-c
Confidence            99999999999998765443331                     11223344442  3 444 446899999998776 4


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .......|..    +|.+++|+|+|++|++++.+|..-+-.
T Consensus       351 ~~~~~~~~~~----~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          351 SNSIPIQLGM----PIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             CCEEEEECSS----CEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             EEEEecCCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            5555566644    899999999999999999988654433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=8.1e-30  Score=236.31  Aligned_cols=228  Identities=17%  Similarity=0.125  Sum_probs=177.2

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRT--GLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~   73 (359)
                      +|+||| .++.  ....+.+|.+. ++|+|+| ++.+|+||+.||+|++||+.++........  +...+.+++|+|++.
T Consensus       143 ~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (435)
T 4e54_B          143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR  222 (435)
T ss_dssp             CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT
T ss_pred             EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC
Confidence            589999 5554  45556688886 9999998 689999999999999999987654333332  334678999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec------cCCcee
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL------PGHAKT  146 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~  146 (359)
                      +|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|++++.|++|++||+++......+      ...|.+
T Consensus       223 ~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  301 (435)
T 4e54_B          223 MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA  301 (435)
T ss_dssp             EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE
T ss_pred             EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccc
Confidence            99999999999999986 456777889999999999999876 7889999999999999987654333      457899


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC--CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916          147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK--GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF  222 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~  222 (359)
                      ++|+|+|  +++++.|+.|+|||+.++ .....+..|....  ...+..+.|+|++.+++++..+....++..+..++.|
T Consensus       302 ~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i  380 (435)
T 4e54_B          302 ACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI  380 (435)
T ss_dssp             CCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred             eeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence            9999999  888899999999998776 4444444443211  1134567899999998888765433444556667789


Q ss_pred             ccccCCCc
Q 041916          223 DSWVANPF  230 (359)
Q Consensus       223 ~~~~~~~~  230 (359)
                      ++|+....
T Consensus       381 ~iwd~~~g  388 (435)
T 4e54_B          381 DVFDGNSG  388 (435)
T ss_dssp             EEECSSSC
T ss_pred             EEEECCCC
Confidence            99987543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=230.73  Aligned_cols=213  Identities=19%  Similarity=0.216  Sum_probs=181.7

Q ss_pred             CeEEEe-CC----CcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe------EEE---EEecCCCCeE
Q 041916            1 YPYIYN-RD----GTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE------IVG---NFRTGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~----g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~   64 (359)
                      .|+||| .+    ...+..+.+|... ++++|+|+ +.+|++++.|+.|++||+.++.      ...   .+..|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            489999 44    3588999999887 99999998 8999999999999999999876      332   2367889999


Q ss_pred             EEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEEEecc------CCCeEEEEEcCCC-CEEEEEeCCC---eEEEEEcCC
Q 041916           65 VMRVNPF-NGVVSLGHSGGTVTMWKPTTAAPLIKMLCH------QGPVSALAFHPNG-HLMATSGKEC---KIKIWDLRK  133 (359)
Q Consensus        65 ~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h------~~~v~~i~~~~~~-~~l~~~~~d~---~i~iwd~~~  133 (359)
                      +++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|++++|+|++ .+|++++.|+   .|++||+++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~  249 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN  249 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence            9999999 789999999999999999999988888776      7899999999997 6899999998   999999998


Q ss_pred             c-eeeEecc----CCceeEEEcC-Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEE
Q 041916          134 Y-EVLQTLP----GHAKTLDFSQ-KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIG  204 (359)
Q Consensus       134 ~-~~~~~~~----~~i~~~~~s~-~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~  204 (359)
                      + .++..+.    ..|.+++|+| ++  +++++.|+.|++||+.++ ..+..+..|..    .|.+++|+|++ .+|+++
T Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGN----WCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSS----CCCCEEECTTCTTEEEEC
T ss_pred             CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCC----ceEEEEECCCCCCEEEEE
Confidence            6 5555553    5689999999 77  778889999999998776 66677777755    89999999999 899998


Q ss_pred             cCCCeEEEEEcCCC
Q 041916          205 HSMGWSSILVPGSG  218 (359)
Q Consensus       205 ~~dg~~~i~~~~~~  218 (359)
                      +.||.+.+|.....
T Consensus       325 ~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          325 SFDNKIEVQTLQNL  338 (416)
T ss_dssp             CSSSEEEEEESCCC
T ss_pred             ecCCcEEEEEccCC
Confidence            88888777765443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.1e-29  Score=225.22  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=173.2

Q ss_pred             CeEEEe-CCCc-EEEEeccCCCe-EEEEE------ecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCC----CeEEE
Q 041916            1 YPYIYN-RDGT-ELHCLKEHGAV-LKLQF------LRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLG----RTDVM   66 (359)
Q Consensus         1 ~v~iwd-~~g~-~~~~l~~h~~~-~~l~~------s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~   66 (359)
                      .|++|| .++. .+..+.+|... .+++|      +|++.+|++++.||.|++||+.++. .+..+..|.+    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            489999 7776 78899999886 99955      6789999999999999999999887 7778876655    78899


Q ss_pred             E----EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           67 R----VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        67 ~----~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      +    |+|++.+|++|+.||.|++||+++++... ...|...|.+++|+|   ++.+|++++.||.|++||++++.++..
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            8    78899999999999999999999887644 457899999999999   999999999999999999998765432


Q ss_pred             c--------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCC------------------ccceeecccCCCCcceE
Q 041916          140 L--------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSH------------------NYSRYMGHSMVKGYQIG  190 (359)
Q Consensus       140 ~--------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~~~v~  190 (359)
                      +        ...|.+++|+|++   +++++.||.|++||+..+..                  .+..+..|..    .|+
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~v~  325 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ----PIS  325 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS----CEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC----Cee
Confidence            2        4578999999998   66778899999999765432                  2334445544    899


Q ss_pred             EEEEeeCCCEEE-EEcCCCeEEEEEcC
Q 041916          191 KVSFRPYEDVLG-IGHSMGWSSILVPG  216 (359)
Q Consensus       191 ~~~~~p~~~~l~-~~~~dg~~~i~~~~  216 (359)
                      +++|+|++.+|+ +++.||.+.+|...
T Consensus       326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          326 SLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            999999999888 67778777766543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3.4e-29  Score=228.86  Aligned_cols=214  Identities=13%  Similarity=0.084  Sum_probs=177.7

Q ss_pred             EEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEe-------------cCCCCeEEE
Q 041916            3 YIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFR-------------TGLGRTDVM   66 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~   66 (359)
                      ++|+ ..+.....+.+|.+. ++++|+| ++.+|++|+.||.|++||+.++.....+.             +|...|.++
T Consensus        26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             HHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred             eeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence            4566 556677788889987 9999999 99999999999999999999876544433             488999999


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916           67 RVNP-FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTL--  140 (359)
Q Consensus        67 ~~sp-~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~--  140 (359)
                      +|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|.   +.++++++.|+.|++||++++.++..+  
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            9999 77899999999999999999998877775 7788999999984   459999999999999999998887777  


Q ss_pred             -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeeccc-----------CCCCcceEEEEEeeCCCEEEEEc
Q 041916          141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHS-----------MVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                       .+.|.+++|+|++   +++++.||.|++||+.........+..+.           ..+...|.+++|+|++.+|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence             4578999999998   55778899999999877643443331110           01334899999999999999999


Q ss_pred             CCCeEEEEEcCC
Q 041916          206 SMGWSSILVPGS  217 (359)
Q Consensus       206 ~dg~~~i~~~~~  217 (359)
                      .||.+.+|....
T Consensus       265 ~dg~i~vwd~~~  276 (408)
T 4a11_B          265 TDNRMRLWNSSN  276 (408)
T ss_dssp             TTSCEEEEETTT
T ss_pred             CCCeEEEEECCC
Confidence            999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=249.75  Aligned_cols=198  Identities=14%  Similarity=0.174  Sum_probs=166.7

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGTVTM   86 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~v~l   86 (359)
                      +..+.+|.+. ++++|+|++.+|++|+.||.|++||+.  ++..+..+.+|.++|.+++|+|+  +.+|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            3567899987 999999999999999999999999998  55778889999999999999988  899999999999999


Q ss_pred             EeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceee--Eec---cCCceeEEEcCC-----
Q 041916           87 WKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVL--QTL---PGHAKTLDFSQK-----  152 (359)
Q Consensus        87 wd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~---~~~i~~~~~s~~-----  152 (359)
                      ||+.++.  .+..+.+|.+.|++++|+|+  +.++++|+.||.|++||++++...  ..+   ...|.+++|+|.     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9999886  67777899999999999999  999999999999999999987332  222   567999999993     


Q ss_pred             --------c--eEEEEcCCcEEEEcCCCCCC---ccceeecccCCCCcceEEEEEeeC---CCEEEEEcCCCeEEEE
Q 041916          153 --------G--LLAVGTGSFVQILGDFSGSH---NYSRYMGHSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 --------g--l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~~~i~  213 (359)
                              +  +++++.||.|++||+.++..   ....+.+|..    +|++++|+|+   +.+|++|+.||.+.+|
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC----cEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence                    6  88888999999999876532   2234445544    8999999999   8999999999977764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=229.58  Aligned_cols=193  Identities=15%  Similarity=0.107  Sum_probs=163.6

Q ss_pred             eEEEEEecCCCEE-EEEecCCeEEEEECC--CCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 041916           21 VLKLQFLRNHFLL-ASINKFGQLRYQDVT--MGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL   95 (359)
Q Consensus        21 ~~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~   95 (359)
                      +++++|+|++.+| ++|+.||.|++||+.  ++.++..+.  .|...|.+++|+|++.+|++|+.||.|.+|++.++...
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE  184 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence            5999999999986 899999999999999  888888876  56789999999999999999999999999999887654


Q ss_pred             E----EEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEEcCCc
Q 041916           96 I----KMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVGTGSF  162 (359)
Q Consensus        96 ~----~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~  162 (359)
                      .    .+.+|.+.|++++|+|+   +.+|++++.|+.|++||++++.++..+    .+.|.+++|+ ++  +++++.|+.
T Consensus       185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~  263 (450)
T 2vdu_B          185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK  263 (450)
T ss_dssp             SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE
T ss_pred             cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe
Confidence            4    67789999999999999   999999999999999999998877663    4578999999 88  788889999


Q ss_pred             EEEEcCCCCCCccceeeccc---------------------CCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEc
Q 041916          163 VQILGDFSGSHNYSRYMGHS---------------------MVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVP  215 (359)
Q Consensus       163 i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~  215 (359)
                      |++||+.++ ..+..+..+.                     ......|.+++|+|++++|++++ .++.+.+|..
T Consensus       264 v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          264 IFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            999998776 4444433210                     00234689999999999998888 7787777775

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=245.75  Aligned_cols=215  Identities=14%  Similarity=0.167  Sum_probs=180.7

Q ss_pred             CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916            1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF-   71 (359)
Q Consensus         1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~-   71 (359)
                      +|+||| .  ++..+..+.+|.+. ++++|+|+  +.+|++|+.||.|++||+.++.  .+..+..|..+|.+++|+|+ 
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~  111 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE  111 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC
Confidence            478999 4  55678899999887 99999988  9999999999999999999987  77888889999999999999 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEEcCCc-
Q 041916           72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHP-------------NGHLMATSGKECKIKIWDLRKY-  134 (359)
Q Consensus        72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~-------------~~~~l~~~~~d~~i~iwd~~~~-  134 (359)
                       +.++++|+.||.|++||+.++.  ....+.+|...|.+++|+|             ++.+|++|+.||.|++||++++ 
T Consensus       112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred             CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence             9999999999999999998773  4556778999999999999             5899999999999999999886 


Q ss_pred             ---eeeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCccc-eeecccCCCCcceEEEEEeeCCCEEE
Q 041916          135 ---EVLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNYS-RYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       135 ---~~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                         .+...+   .+.|.+++|+|+   +  +++++.||.|++||+.++..... ....... +...|++++|+|++.+|+
T Consensus       192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~  270 (753)
T 3jro_A          192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLA  270 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEE
T ss_pred             ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEE
Confidence               444444   457999999999   7  78888999999999876532211 1111111 344899999999999999


Q ss_pred             EEcCCCeEEEEEcC
Q 041916          203 IGHSMGWSSILVPG  216 (359)
Q Consensus       203 ~~~~dg~~~i~~~~  216 (359)
                      +|+.||.+.+|...
T Consensus       271 s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          271 LSGGDNKVTLWKEN  284 (753)
T ss_dssp             EECSSSCEECCBCC
T ss_pred             EEcCCCEEEEEecC
Confidence            99999988887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.8e-28  Score=214.24  Aligned_cols=208  Identities=13%  Similarity=0.068  Sum_probs=158.3

Q ss_pred             CeEEEe-CCC---cEEEEeccCCC--------------------------eEEEEEecC----CCEEEEEec--------
Q 041916            1 YPYIYN-RDG---TELHCLKEHGA--------------------------VLKLQFLRN----HFLLASINK--------   38 (359)
Q Consensus         1 ~v~iwd-~~g---~~~~~l~~h~~--------------------------~~~l~~s~~----~~~l~s~~~--------   38 (359)
                      .|.+|+ .++   +.++++..|..                          +++++|+||    +.++++++.        
T Consensus        64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~  143 (356)
T 2w18_A           64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLT  143 (356)
T ss_dssp             EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEET
T ss_pred             eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecC
Confidence            378899 777   67888777652                          367888888    888887664        


Q ss_pred             ------------CCeEEEEEC-CCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEEeccC
Q 041916           39 ------------FGQLRYQDV-TMGEIVGNFRTGLGRTDVMRVNP---FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ  102 (359)
Q Consensus        39 ------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~  102 (359)
                                  |+.|++|++ .+|+.+..+..|...+..++|+|   ++.+|++|+.|++|+|||+.+++++.++.+|.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence                        888888888 44788888888888888889988   67899999999999999999999999998654


Q ss_pred             ---CCeEEEEEcCCCCEE------------EEEeCCCeEEEEEcCCceeeEec-----cCC---ceeEEEcCCc--eEEE
Q 041916          103 ---GPVSALAFHPNGHLM------------ATSGKECKIKIWDLRKYEVLQTL-----PGH---AKTLDFSQKG--LLAV  157 (359)
Q Consensus       103 ---~~v~~i~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~-----~~~---i~~~~~s~~g--l~~~  157 (359)
                         ..+.+++|+|+|.++            ++|+.|++|++||..+++.+..+     .++   +.+..++  +  ++++
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg  301 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI  301 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence               367788999999886            56788999999999999887654     232   2233333  4  6667


Q ss_pred             EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +.|++|+|||+.++ +.+..+.+|..   ..+..++|+|+|++|++|+.|+.+++|.
T Consensus       302 S~DgTIkIWDl~tG-k~l~tL~gH~~---~vvs~vafSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          302 LTSGTIAIWDLLLG-QCTALLPPVSD---QHWSFVKWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ETTSCEEEEETTTC-SEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEECCCC-cEEEEecCCCC---CeEEEEEECCCCCEEEEEECCCcEEEec
Confidence            78999999998877 67777877743   2345689999999999988888777764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=219.81  Aligned_cols=203  Identities=11%  Similarity=0.108  Sum_probs=163.1

Q ss_pred             CCCcEEEEec-cCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCC
Q 041916            7 RDGTELHCLK-EHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus         7 ~~g~~~~~l~-~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~d   81 (359)
                      .++..+..+. .|.+. .+++|+|  ++.+|++|+.||+|++||+.+++++..+.. +...+.+++|+|++.+|++|+.|
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            4555555554 55554 9999999  999999999999999999999998776644 45589999999999999999999


Q ss_pred             CeEEEEeCCCCcce-EEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------CCce--eEEEcC
Q 041916           82 GTVTMWKPTTAAPL-IKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------GHAK--TLDFSQ  151 (359)
Q Consensus        82 g~v~lwd~~~~~~~-~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~i~--~~~~s~  151 (359)
                      |.|++||++++..+ ..+.. |.++|++++|+|+|.+|++++ |+.|++||++++.++..+.      .++.  +++|+|
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD  270 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence            99999999999887 78887 999999999999999999999 5599999999987765542      2333  699999


Q ss_pred             Cc--eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee---CCCEEEEEcCCCeEEEEEcCCCC
Q 041916          152 KG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP---YEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       152 ~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +|  +++++. |+.|++|++.........     .    ++..++|.|   +...+++++.||.+.+++..+.+
T Consensus       271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK-----D----EESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS  335 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCSEEE-----E----EEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred             CCCEEEEecCCCCcEEEEEEcccccceEe-----c----CceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence            99  556666 899999997655332222     1    688899999   88999999999988887755443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=221.35  Aligned_cols=211  Identities=9%  Similarity=0.019  Sum_probs=164.9

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC---------CCeEEEEEe-cCCCCeEEEEEc
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT---------MGEIVGNFR-TGLGRTDVMRVN   69 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~-~~~~~v~~~~~s   69 (359)
                      +|++|| .+|..+..+. ...+.++.|+|+   +++++.|++|++|+..         +++.+..+. .|.++|.+++|+
T Consensus        59 ~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  134 (343)
T 3lrv_A           59 ALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGH  134 (343)
T ss_dssp             EEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC
T ss_pred             cEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcC
Confidence            478999 8888888777 233478888888   9999999999999765         555555555 677889999999


Q ss_pred             C--CCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-Eec----c
Q 041916           70 P--FNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QTL----P  141 (359)
Q Consensus        70 p--~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~----~  141 (359)
                      |  ++.+|++|+.||+|++||+++++.+..+. .|...|++++|+|+|.+|++|+.||.|++||+++++.+ ..+    .
T Consensus       135 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~  214 (343)
T 3lrv_A          135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE  214 (343)
T ss_dssp             C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence            9  99999999999999999999998866664 45568999999999999999999999999999998866 555    3


Q ss_pred             CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcce--EEEEEeeCCCEEEEEcC-CCeEEEEEcCC
Q 041916          142 GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI--GKVSFRPYEDVLGIGHS-MGWSSILVPGS  217 (359)
Q Consensus       142 ~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~-dg~~~i~~~~~  217 (359)
                      ++|.+++|+|+| +++++.++.|++||+.+. .....+..+.. +...+  .+++|+|++++|++++. ++.+.+|....
T Consensus       215 ~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          215 AKIKEVKFADNGYWMVVECDQTVVCFDLRKD-VGTLAYPTYTI-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEESSBEEEEETTSS-TTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC-Ccceeeccccc-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            579999999999 444444779999998776 33333332111 11134  46999999999999888 88888876543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.1e-27  Score=223.43  Aligned_cols=209  Identities=17%  Similarity=0.233  Sum_probs=178.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEe--cCCCEEEEEecCCeEEEEECCCCe-----------------------EE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFL--RNHFLLASINKFGQLRYQDVTMGE-----------------------IV   53 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s--~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~   53 (359)
                      +|++|| .++..+..+.+|... .+++|+  +++.+|++|+.||.|++||+.++.                       .+
T Consensus       184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            589999 889999999999887 999998  477999999999999999998765                       25


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK  133 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~  133 (359)
                      ..+.+|...|.++  ++++.++++|+.||.|++||+.+++++..+.+|.+.|.+++|+|+++++++|+.|+.|++||+++
T Consensus       264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            5677888888877  57789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeEec---cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          134 YEVLQTL---PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       134 ~~~~~~~---~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      ++++..+   ...|.+++|++.-+++++.||.|++||+.+.. ..... .+    ...+..++|+|++.+|++|+ +|.+
T Consensus       342 ~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          342 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-RKFSY-HH----TNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEEEE-EC----TTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-eeeee-cC----CCCccEEEEEeCCCEEEEec-CCeE
Confidence            9998888   45689999996558999999999999987653 22222 22    23688899999999999887 7777


Q ss_pred             EEEEcCCC
Q 041916          211 SILVPGSG  218 (359)
Q Consensus       211 ~i~~~~~~  218 (359)
                      .+|...++
T Consensus       415 ~iwd~~~g  422 (464)
T 3v7d_B          415 NIYNLRSG  422 (464)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            77765543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=9.4e-29  Score=226.65  Aligned_cols=211  Identities=14%  Similarity=0.115  Sum_probs=176.0

Q ss_pred             CeEEEe-CCC-------cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEE--ecCCCCeEEEEE
Q 041916            1 YPYIYN-RDG-------TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNF--RTGLGRTDVMRV   68 (359)
Q Consensus         1 ~v~iwd-~~g-------~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~   68 (359)
                      +|+||| .++       ..+..+.+|... .+++|+|++ .+|++|+.||.|++||+.+++.+..+  ..|...|.+++|
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  184 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW  184 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence            489999 666       567889999886 999999998 79999999999999999999999999  789999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCcceEEE-eccCCC-eEEEEEcCCCCEEEEE---eCCCeEEEEEcCCcee-e--Eec
Q 041916           69 NPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-LCHQGP-VSALAFHPNGHLMATS---GKECKIKIWDLRKYEV-L--QTL  140 (359)
Q Consensus        69 sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-~~h~~~-v~~i~~~~~~~~l~~~---~~d~~i~iwd~~~~~~-~--~~~  140 (359)
                      +|++.+|++|+.||.|++||+++++.+..+ .+|.+. +.+++|+|++.+|++|   +.|+.|++||++++.. +  ..+
T Consensus       185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~  264 (402)
T 2aq5_A          185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL  264 (402)
T ss_dssp             CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred             CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence            999999999999999999999999998888 688876 8999999999999999   7899999999998654 2  222


Q ss_pred             --cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          141 --PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       141 --~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                        ...+.+++|+|++  +++++ .|+.|++||+.++......+..|.  +..+|.+++|+|++.++++  .++.+.+|..
T Consensus       265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l  340 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEVN--KCEIARFYKL  340 (402)
T ss_dssp             CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred             cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEeccccccee--cceeEEEEEc
Confidence              4568999999999  54455 699999999877644355555553  3348999999999987653  3344455443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.8e-28  Score=225.79  Aligned_cols=212  Identities=13%  Similarity=0.179  Sum_probs=168.3

Q ss_pred             CeEEEe-C---CCcEEEEeccC------------CC-eEEEE--EecCCCEEEEEecCCeEEEEECCCCeEEEEEec--C
Q 041916            1 YPYIYN-R---DGTELHCLKEH------------GA-VLKLQ--FLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT--G   59 (359)
Q Consensus         1 ~v~iwd-~---~g~~~~~l~~h------------~~-~~~l~--~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~   59 (359)
                      +|+||| .   +|..+..+..|            .. +.++.  ++|++.+|++|+.|+.|++||+.+++++..+..  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            378898 3   56555444322            22 35665  557899999999999999999999999999998  8


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC----CCCEEEEEeCCCeEEEEEcCCc
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP----NGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~----~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      .+.|++++|+|++.+|++|+.||.|++||++++.++..+. .|..+|++++|+|    ++.+|++++.|+.|++||++++
T Consensus       214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            8999999999999999999999999999999999888886 7888999996665    6779999999999999999998


Q ss_pred             eeeEecc-----------------------------CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeeccc--
Q 041916          135 EVLQTLP-----------------------------GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHS--  182 (359)
Q Consensus       135 ~~~~~~~-----------------------------~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--  182 (359)
                      +++..+.                             ..|.+++|++.. +++++.|+.|++||+.++ .....+.+|.  
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~  372 (437)
T 3gre_A          294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRF  372 (437)
T ss_dssp             EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--C
T ss_pred             cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc-ccceEEeccccc
Confidence            8766552                             137889999444 777888999999998766 4444444320  


Q ss_pred             -------------------------------CCCCcceEEEEEeeC--CCEEEEEcCCCeEEEE
Q 041916          183 -------------------------------MVKGYQIGKVSFRPY--EDVLGIGHSMGWSSIL  213 (359)
Q Consensus       183 -------------------------------~~~~~~v~~~~~~p~--~~~l~~~~~dg~~~i~  213 (359)
                                                     ..+...|++++|+++  +.+|++|+.||.+.+|
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence                                           002348999999998  7788888888877766

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-28  Score=227.10  Aligned_cols=210  Identities=14%  Similarity=0.151  Sum_probs=170.4

Q ss_pred             EEeCCCcEEEEe-ccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCC---Ce---EEEEEecCCCCeEEEEEcCCCCE
Q 041916            4 IYNRDGTELHCL-KEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTM---GE---IVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         4 iwd~~g~~~~~l-~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      .|+.+|+.+..+ .+|.+. ++++|+| ++.+|++|+.||+|++||+.+   +.   ....+ .|..+|.+++|+|++.+
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence            477788999999 888776 9999999 999999999999999999976   43   23333 48999999999999999


Q ss_pred             EEEEeCCCeEEEEeCC---CCcceEEEec------------cCCCeEEEE--EcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916           75 VSLGHSGGTVTMWKPT---TAAPLIKMLC------------HQGPVSALA--FHPNGHLMATSGKECKIKIWDLRKYEVL  137 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~---~~~~~~~~~~------------h~~~v~~i~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~  137 (359)
                      |++|+.||.|++||+.   +++.+..+..            +...+.++.  ++|++.+|++++.|+.|++||+++++++
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence            9999999999999994   5544443332            455666666  5678999999999999999999999988


Q ss_pred             Eecc-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceee-cccCCCCcceEEEEEee----CCCEEEEEc
Q 041916          138 QTLP-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRP----YEDVLGIGH  205 (359)
Q Consensus       138 ~~~~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p----~~~~l~~~~  205 (359)
                      ..+.     +.|.+++|+|++  +++++.||.|++||+.++ ..+..+. .|..    +|.+++|+|    ++.+|++|+
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~----~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHA----PITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCE----EEEEEEECTTTCTTEEEEEEES
T ss_pred             EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCC----ceEEEEeccccCCCccEEEEEc
Confidence            7773     578999999999  778889999999998775 4444443 4433    899996665    577999999


Q ss_pred             CCCeEEEEEcCCCC
Q 041916          206 SMGWSSILVPGSGE  219 (359)
Q Consensus       206 ~dg~~~i~~~~~~d  219 (359)
                      .||.+.+|....+.
T Consensus       281 ~dg~i~iwd~~~~~  294 (437)
T 3gre_A          281 SKTFLTIWNFVKGH  294 (437)
T ss_dssp             TTEEEEEEETTTTE
T ss_pred             CCCcEEEEEcCCCc
Confidence            99988888765443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=5.4e-28  Score=216.04  Aligned_cols=212  Identities=10%  Similarity=0.019  Sum_probs=175.2

Q ss_pred             CeEEEe-CCCc---EEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEEC-CCCeEEEEEec--CCCCeEEEEEcCC
Q 041916            1 YPYIYN-RDGT---ELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDV-TMGEIVGNFRT--GLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~~g~---~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~sp~   71 (359)
                      .|+||+ .++.   ....+..|... ++++|+|++. +|++|+.||.|++||+ .++.. ..+..  |...|.+++|+| 
T Consensus        34 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-  111 (342)
T 1yfq_A           34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-  111 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-
T ss_pred             eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-
Confidence            378999 6665   34555677776 9999999999 9999999999999999 87764 77888  999999999999 


Q ss_pred             CCEEEEEeCCCeEEEEeCCC---------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceee-E-e
Q 041916           72 NGVVSLGHSGGTVTMWKPTT---------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVL-Q-T  139 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~---------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~-~-~  139 (359)
                      +.+|++++.||.|++||+++         ++++..+. |.+.|.+++|+|++  +++++.|+.|++||+++ +... . .
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~  188 (342)
T 1yfq_A          112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee
Confidence            99999999999999999987         77666665 88999999999987  99999999999999998 5431 1 1


Q ss_pred             ---ccCCceeEEEcC-Cc--eEEEEcCCcEEEEcCCCC-----CCccceeecccC-----CCCcceEEEEEeeCCCEEEE
Q 041916          140 ---LPGHAKTLDFSQ-KG--LLAVGTGSFVQILGDFSG-----SHNYSRYMGHSM-----VKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       140 ---~~~~i~~~~~s~-~g--l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~  203 (359)
                         ....+.+++|+| ++  +++++.||.|++|++...     ......+..|..     .+...|.+++|+|++.+|++
T Consensus       189 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence               156799999999 88  778889999999997665     355566666632     12348999999999999999


Q ss_pred             EcCCCeEEEEEcCC
Q 041916          204 GHSMGWSSILVPGS  217 (359)
Q Consensus       204 ~~~dg~~~i~~~~~  217 (359)
                      |+.||.+.+|....
T Consensus       269 ~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          269 AGSDGIISCWNLQT  282 (342)
T ss_dssp             EETTSCEEEEETTT
T ss_pred             ecCCceEEEEcCcc
Confidence            99988877777543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=4.1e-27  Score=218.58  Aligned_cols=200  Identities=17%  Similarity=0.249  Sum_probs=172.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|| .++..+..+.+|... .+++|+  +.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +..+++|
T Consensus       140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  215 (445)
T 2ovr_B          140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSG  215 (445)
T ss_dssp             CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEE
Confidence            589999 899999999999987 999997  5699999999999999999999999999999999999996  4689999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCceE
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKGLL  155 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~gl~  155 (359)
                      +.||.|++||+.+++.+..+.+|...|.+++|  ++.++++++.|+.|++||+++++++..+.   +.+.+++|+..-++
T Consensus       216 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~  293 (445)
T 2ovr_B          216 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV  293 (445)
T ss_dssp             ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEE
T ss_pred             eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEE
Confidence            99999999999999999999999999999999  78899999999999999999999888873   56888988333388


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +++.|+.|++||+.++ .....+..|..    .+.++.+  ++.+|++|+.||.+.+|
T Consensus       294 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~v~~~~~--~~~~l~~~~~dg~i~vw  344 (445)
T 2ovr_B          294 SGSLDTSIRVWDVETG-NCIHTLTGHQS----LTSGMEL--KDNILVSGNADSTVKIW  344 (445)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECCCCS----CEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             EEeCCCeEEEEECCCC-CEEEEEcCCcc----cEEEEEE--eCCEEEEEeCCCeEEEE
Confidence            8889999999998776 55666666644    6776665  57789999998866654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=8.2e-28  Score=249.88  Aligned_cols=216  Identities=16%  Similarity=0.208  Sum_probs=184.2

Q ss_pred             EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      ...+.+|.+. ++++|+|++.+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.||.|++||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            3467789887 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcE
Q 041916           91 TAAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFV  163 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i  163 (359)
                      +++.+..+.+|.+.|.+++|+|  ++.++++++.|+.|++||++++.++..+   .+.|.+++|+|++  +++++.||.|
T Consensus       688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            9999999999999999999999  5668999999999999999999988877   4578999999999  7888899999


Q ss_pred             EEEcCCCCCCccceee---------------------------------------------------cccCCCCcceEEE
Q 041916          164 QILGDFSGSHNYSRYM---------------------------------------------------GHSMVKGYQIGKV  192 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~v~~~  192 (359)
                      ++||+.++.. ...+.                                                   .....+...|.++
T Consensus       768 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          768 RLWDVRSANE-RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEGGGTEE-EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEeCCCCcc-cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            9999755411 10000                                                   0000134478999


Q ss_pred             EEeeCCCEEEEEcCCCeEEEE------------------------------EcCCCCCccccccCC
Q 041916          193 SFRPYEDVLGIGHSMGWSSIL------------------------------VPGSGEPNFDSWVAN  228 (359)
Q Consensus       193 ~~~p~~~~l~~~~~dg~~~i~------------------------------~~~~~d~~~~~~~~~  228 (359)
                      +|+|++.++++++.+|.+.+|                              ++++.|+.+++|+..
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            999999999999999866553                              456678888888753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-27  Score=208.07  Aligned_cols=201  Identities=17%  Similarity=0.162  Sum_probs=170.4

Q ss_pred             CeEEEe-C---CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCE
Q 041916            1 YPYIYN-R---DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGV   74 (359)
Q Consensus         1 ~v~iwd-~---~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~   74 (359)
                      .|++|+ .   .+..+..+..|... .+++|  ++.+|++++.||.|++||  .+..+..+..|..++.+++|+| ++.+
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            367888 3   33567788889887 99999  567999999999999999  6888899999999999999998 8899


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEc
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFS  150 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s  150 (359)
                      +++++.||.|++||  .......+.. |...|.+++|+|++. +++++.|+.|++||+++++++..+   .+.+.+++|+
T Consensus       158 l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          158 FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence            99999999999999  4556667776 999999999999998 999999999999999999988877   4579999999


Q ss_pred             CCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      |++ +++++.||.|++||+.++ .....+..|..    .|.+++|+|++. +++++.||.+.+|.
T Consensus       235 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~----~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          235 PNGDIVSCGEDRTVRIWSKENG-SLKQVITLPAI----SIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             TTSCEEEEETTSEEEEECTTTC-CEEEEEECSSS----CEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             cCCCEEEEecCCEEEEEECCCC-ceeEEEeccCc----eEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            999 999999999999998776 56666766654    899999999998 44566665555444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=8e-28  Score=214.93  Aligned_cols=200  Identities=12%  Similarity=0.008  Sum_probs=170.2

Q ss_pred             EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEE
Q 041916           13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMW   87 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lw   87 (359)
                      ....+|.+. ++++|+|++.+|++++.||.|++||+.++.   ....+..|...|.+++|+|++. +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            334578776 999999999999999999999999998877   3455668999999999999999 99999999999999


Q ss_pred             eC-CCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------ceeeEec--cCCceeEEEcCCc
Q 041916           88 KP-TTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQTL--PGHAKTLDFSQKG  153 (359)
Q Consensus        88 d~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~--~~~i~~~~~s~~g  153 (359)
                      |+ .++. ...+.+  |...|.+++|+| +.+|++++.|+.|++||+++         ++++..+  .+.+.+++|+|++
T Consensus        85 d~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           85 DLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             CSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             EeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence            99 7664 467778  999999999999 99999999999999999998         7666665  5679999999999


Q ss_pred             eEEEEcCCcEEEEcCCC-CCCccc-eeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEcCCC
Q 041916          154 LLAVGTGSFVQILGDFS-GSHNYS-RYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +++++.++.|++||+.+ ...... ....|    ...|.+++|+| ++.+|++|+.+|.+.+|.....
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGL----KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSC----SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCC----CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            88999999999999876 433222 22233    34899999999 9999999999998888765443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=2.5e-27  Score=228.25  Aligned_cols=206  Identities=14%  Similarity=0.170  Sum_probs=181.3

Q ss_pred             eEEEe-CCC----cEEEEeccCCC--eEEEEEec--CCCEEEEEecCCeEEEEECCCC--------eEEEEEecCCCCeE
Q 041916            2 PYIYN-RDG----TELHCLKEHGA--VLKLQFLR--NHFLLASINKFGQLRYQDVTMG--------EIVGNFRTGLGRTD   64 (359)
Q Consensus         2 v~iwd-~~g----~~~~~l~~h~~--~~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~   64 (359)
                      |+||| .++    ..+..+.+|..  +++++|+|  ++.+|++|+.||.|++||+.++        ..+..+..|..+|.
T Consensus        41 v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~  120 (615)
T 1pgu_A           41 AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS  120 (615)
T ss_dssp             EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE
T ss_pred             EEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE
Confidence            78999 778    78889998876  59999999  9999999999999999999755        67788889999999


Q ss_pred             EEEEcCCCCEEEEEeCC----CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEe
Q 041916           65 VMRVNPFNGVVSLGHSG----GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~d----g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      +++|+|++.+|++++.+    +.|.+||  .+..+..+.+|.+.|++++|+|++. ++++++.|+.|++||+.+++++..
T Consensus       121 ~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~  198 (615)
T 1pgu_A          121 DISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS  198 (615)
T ss_dssp             EEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred             EEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence            99999999999999988    7899998  5677888899999999999999998 799999999999999999998888


Q ss_pred             c---cC---CceeEEEcCC-c--eEEEEcCCcEEEEcCCCCCCcccee-e---cccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          140 L---PG---HAKTLDFSQK-G--LLAVGTGSFVQILGDFSGSHNYSRY-M---GHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       140 ~---~~---~i~~~~~s~~-g--l~~~~~d~~i~i~d~~~~~~~~~~~-~---~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      +   ..   .|.+++|+|+ +  +++++.|+.|++||+.++ .....+ .   .|..    .|.+++|+ ++.+|++++.
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~----~v~~~~~~-~~~~l~~~~~  272 (615)
T 1pgu_A          199 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQG----GIFALSWL-DSQKFATVGA  272 (615)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCS----CEEEEEES-SSSEEEEEET
T ss_pred             ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCC----ceEEEEEc-CCCEEEEEcC
Confidence            7   34   6899999999 8  777888999999998776 455555 3   5544    89999999 9999999999


Q ss_pred             CCeEEEEEc
Q 041916          207 MGWSSILVP  215 (359)
Q Consensus       207 dg~~~i~~~  215 (359)
                      ||.+.+|..
T Consensus       273 d~~i~~wd~  281 (615)
T 1pgu_A          273 DATIRVWDV  281 (615)
T ss_dssp             TSEEEEEET
T ss_pred             CCcEEEEEC
Confidence            998777653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.3e-27  Score=221.19  Aligned_cols=201  Identities=14%  Similarity=0.162  Sum_probs=169.8

Q ss_pred             EEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCC----------CeEEEEEecCCCCeEEEEEcCCCC-EEEEEe
Q 041916           13 HCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTM----------GEIVGNFRTGLGRTDVMRVNPFNG-VVSLGH   79 (359)
Q Consensus        13 ~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~   79 (359)
                      .....|.+. ++++|+|+ +.+||+++.||.|++||+.+          ...+..+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            444566665 99999997 68999999999999999986          677888999999999999999988 999999


Q ss_pred             CCCeEEEEeCCCCcc-------eEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc---eeeEec---cCCce
Q 041916           80 SGGTVTMWKPTTAAP-------LIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY---EVLQTL---PGHAK  145 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~-------~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~---~~~i~  145 (359)
                      .||.|++||+.++..       ...+.+|.+.|.+++|+| ++.+|++++.|+.|++||++++   .++..+   ...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987422       456778999999999999 7889999999999999999986   455544   56799


Q ss_pred             eEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEcCC
Q 041916          146 TLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       146 ~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~~~  217 (359)
                      +++|+|++   +++++.||.|++||+.....++..+..|..    .|++++|+|++. +|++++.||.+.+|....
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            99999988   567888999999998876567777777765    899999999995 577877777777766543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=2.1e-27  Score=220.11  Aligned_cols=196  Identities=11%  Similarity=0.123  Sum_probs=159.1

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCe-----------EEEEEecCC------------CCeEEEEEcCCC--CE
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-----------IVGNFRTGL------------GRTDVMRVNPFN--GV   74 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~sp~~--~~   74 (359)
                      .+++++|+|++.+||+|+.||.|++||+.++.           +...+.+|.            ..|.+++|+|++  .+
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~  109 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ  109 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence            35999999999999999999999999999876           578899998            889999999998  79


Q ss_pred             EEEEeCCCeEEEEeCCCCcce---------------------------------------EE-EeccCCCeEEEEEcCCC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPL---------------------------------------IK-MLCHQGPVSALAFHPNG  114 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i~~~~~~  114 (359)
                      |++++.||.|++||+.++...                                       .. ..+|...|++++|+|++
T Consensus       110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  189 (447)
T 3dw8_B          110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY  189 (447)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred             EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence            999999999999998764321                                       12 35799999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCC-ceeeEe-------c---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc---cce
Q 041916          115 HLMATSGKECKIKIWDLRK-YEVLQT-------L---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN---YSR  177 (359)
Q Consensus       115 ~~l~~~~~d~~i~iwd~~~-~~~~~~-------~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~---~~~  177 (359)
                      ++|++| .|+.|++||+++ ...+..       +   ...|.+++|+|++   +++++.||.|++||+.++...   ...
T Consensus       190 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  268 (447)
T 3dw8_B          190 ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL  268 (447)
T ss_dssp             SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred             CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence            999998 799999999994 444442       2   4568999999987   778889999999998776322   344


Q ss_pred             eecccCC--------CCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          178 YMGHSMV--------KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       178 ~~~~~~~--------~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      +..|...        +...|.+++|+|++.+|++++. |.+.+|....
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            5544210        0127999999999999999988 8888887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=237.63  Aligned_cols=198  Identities=10%  Similarity=0.037  Sum_probs=166.6

Q ss_pred             ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916           16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      .+|... ++++|+|++.+||+|+.||.|++||..+++....+. |..+|.+++|+| +.+|++++.|++|++||+.++++
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~   91 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV   91 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence            467665 999999999999999999999999998887765554 778999999999 88999999999999999999998


Q ss_pred             eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-----------Eec---cCCceeEEEcCCc---eEEE
Q 041916           95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-----------QTL---PGHAKTLDFSQKG---LLAV  157 (359)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~---~~~i~~~~~s~~g---l~~~  157 (359)
                      +..+. |.+.|++++|+|++++|++|+.||+|++||+.++.+.           ..+   .+.|.+++|+|++   ++++
T Consensus        92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            88885 7789999999999999999999999999999988753           111   3579999999974   6777


Q ss_pred             EcCCcEEEEcCCCCCCccceeeccc--------------CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          158 GTGSFVQILGDFSGSHNYSRYMGHS--------------MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +.|+.| +||+.++ .....+..|.              ..+...|++++|+|+|.+|++|+.||.+.+|....+
T Consensus       171 ~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          171 YEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             CSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             eCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            788999 9998766 4444454440              001247999999999999999999999999987554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=222.14  Aligned_cols=200  Identities=12%  Similarity=0.035  Sum_probs=165.1

Q ss_pred             CeEEEe-C--CCcEEEEec--cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----EEecCCCCeEEEEEcC
Q 041916            1 YPYIYN-R--DGTELHCLK--EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----NFRTGLGRTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~--~g~~~~~l~--~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp   70 (359)
                      +|+||| .  ++..+..+.  .|.. +++++|+|++.+|++|+.+|.|++|++.++....    .+.+|...|++++|+|
T Consensus       126 ~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  205 (450)
T 2vdu_B          126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK  205 (450)
T ss_dssp             EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE
T ss_pred             eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC
Confidence            378999 6  788888886  4445 4999999999999999999999999998877544    7788999999999999


Q ss_pred             C---CCEEEEEeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----
Q 041916           71 F---NGVVSLGHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----  141 (359)
Q Consensus        71 ~---~~~l~sg~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----  141 (359)
                      +   +.+|++|+.|+.|++||+.++..+.. +.+|.+.|++++|+ ++.+|++++.|++|++||+++++++..+.     
T Consensus       206 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  284 (450)
T 2vdu_B          206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI  284 (450)
T ss_dssp             CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh
Confidence            9   99999999999999999999988877 55899999999999 99999999999999999999998776652     


Q ss_pred             -----------------------CCceeEEEcCCc--eEEEE-cCCcEEEEcC--CCCC--CccceeecccCCCCcceEE
Q 041916          142 -----------------------GHAKTLDFSQKG--LLAVG-TGSFVQILGD--FSGS--HNYSRYMGHSMVKGYQIGK  191 (359)
Q Consensus       142 -----------------------~~i~~~~~s~~g--l~~~~-~d~~i~i~d~--~~~~--~~~~~~~~~~~~~~~~v~~  191 (359)
                                             ..+.+++|+|++  +++++ .++.|++|++  ..+.  .....+..+ .    .|.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~----~v~~  359 (450)
T 2vdu_B          285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y----NVIS  359 (450)
T ss_dssp             GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S----CEEE
T ss_pred             hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C----ceEE
Confidence                                   247899999999  56666 7899999997  3321  233344444 2    7999


Q ss_pred             EEEeeCCCEEEEEcC
Q 041916          192 VSFRPYEDVLGIGHS  206 (359)
Q Consensus       192 ~~~~p~~~~l~~~~~  206 (359)
                      ++|+|++.++++++.
T Consensus       360 ~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          360 LSAHNDEFQVTLDNK  374 (450)
T ss_dssp             EEEETTEEEEEECCT
T ss_pred             EEecCCcEEEEEecc
Confidence            999996544444343

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.6e-27  Score=215.71  Aligned_cols=170  Identities=12%  Similarity=0.090  Sum_probs=146.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      +|+||| .++.++..+..+..+.+++|+|||.+|++++.+ .+.+|+..++..+..  ...|...|.+++|+|++.++++
T Consensus       158 ~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~  236 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA  236 (365)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred             EEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence            489999 899999999866667999999999999999855 677777777776543  3468889999999999999999


Q ss_pred             EeCCC----eEEEEeCCCCcc----eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCce
Q 041916           78 GHSGG----TVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAK  145 (359)
Q Consensus        78 g~~dg----~v~lwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~  145 (359)
                      ++.|+    .+.+|++.....    ...+.+|...|++++|+|+|++||+|+.|++|+|||+++++++..+    ...|+
T Consensus       237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~  316 (365)
T 4h5i_A          237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT  316 (365)
T ss_dssp             EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred             EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence            99887    688899876643    3456789999999999999999999999999999999999998875    35799


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      +++|||+|  +++++.|++|+|||+..+
T Consensus       317 ~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          317 EVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999  888999999999998654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=2e-26  Score=213.91  Aligned_cols=209  Identities=18%  Similarity=0.250  Sum_probs=180.9

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|| .++..+..+.+|... .+++|+  +.+|++|+.||.|++||+.+++.+..+.+|..+|.+++|  ++.++++|
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence            589999 889999999999987 999996  567999999999999999999999999999999999999  67899999


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCceE
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKGLL  155 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~gl~  155 (359)
                      +.||.|++||+.+++++..+.+|.+.|.+++|  ++.++++++.|+.|++||+++++++..+.   ..+.++.++++-++
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~  333 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV  333 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEE
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEE
Confidence            99999999999999999999999999999999  78899999999999999999999888873   45677777655588


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      +++.||.|++||+.++ .....+..+.. +...|++++|+  +.+|++|+.||.+.+|....+.
T Consensus       334 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          334 SGNADSTVKIWDIKTG-QCLQTLQGPNK-HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECSTTS-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             EEeCCCeEEEEECCCC-cEEEEEccCCC-CCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence            8999999999998766 55666665332 34489999995  6789999988888888765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.2e-28  Score=223.03  Aligned_cols=199  Identities=9%  Similarity=0.100  Sum_probs=160.2

Q ss_pred             cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           17 EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-----RTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        17 ~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      .|.. +.+++|||+|.+||+++.||.|++||..+  ++..+. |..     .|.+++|||+|++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            3344 49999999999999999999999999643  677777 665     49999999999999999999999999999


Q ss_pred             CCcc-------eEEE----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEec----cCCceeEEEcCC
Q 041916           91 TAAP-------LIKM----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTL----PGHAKTLDFSQK  152 (359)
Q Consensus        91 ~~~~-------~~~~----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~i~~~~~s~~  152 (359)
                      ++..       +.++    .+|.+.|.+++|+|+|  +++++.|++|++||+.++..   ..++    ...|.+++|+ +
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g  236 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-D  236 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-C
Confidence            8753       5666    5677899999999999  88899999999999988763   2333    3469999999 4


Q ss_pred             ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE--eeCCCEEEEEcCCCeEEEEEc------C------CC
Q 041916          153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF--RPYEDVLGIGHSMGWSSILVP------G------SG  218 (359)
Q Consensus       153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~dg~~~i~~~------~------~~  218 (359)
                      ..++++.++.|++||+..+ .......+|..    .|.+++|  +|++..|++++.+|. ++|..      .      +.
T Consensus       237 ~~LASa~~~tIkLWd~~~~-~~~~~~~gh~~----~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~  310 (588)
T 2j04_A          237 YKVVLTCPGYVHKIDLKNY-SISSLKTGSLE----NFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL  310 (588)
T ss_dssp             TEEEEECSSEEEEEETTTT-EEEEEECSCCS----CCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred             CEEEEEeCCeEEEEECCCC-eEEEEEcCCCc----eEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence            5555555899999997655 33222225654    8999999  999999999999998 77763      1      12


Q ss_pred             CCccccccC
Q 041916          219 EPNFDSWVA  227 (359)
Q Consensus       219 d~~~~~~~~  227 (359)
                      |+.+++|+.
T Consensus       311 d~~v~lW~~  319 (588)
T 2j04_A          311 EKKFKKWST  319 (588)
T ss_dssp             HHHHHHTTT
T ss_pred             CCEEEEEEC
Confidence            677888876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=5.7e-27  Score=217.11  Aligned_cols=201  Identities=14%  Similarity=0.211  Sum_probs=168.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV---GNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      +|++|| .++..+..+.+|... .+++|++  .+|++|+.||.|++||+.++...   ..+.+|...|.+++|  ++.+|
T Consensus       194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  269 (435)
T 1p22_A          194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI  269 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEE
Confidence            589999 899999999999887 9999974  58999999999999999987654   677889999999999  67899


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCC
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQK  152 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~  152 (359)
                      ++|+.||.|++||+++++++..+.+|...|.+++|  ++.++++|+.||.|++||++++.++..+.   ..|.+++|++.
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  347 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK  347 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSS
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCC
Confidence            99999999999999999999999999999999999  46799999999999999999999988883   46899999444


Q ss_pred             ceEEEEcCCcEEEEcCCCCCC--------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          153 GLLAVGTGSFVQILGDFSGSH--------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       153 gl~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      -+++++.||.|++||+.++..        ....+..|..    .|.+++|  ++.+|++|+.||.+.+|
T Consensus       348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~--~~~~l~s~s~Dg~i~iw  410 (435)
T 1p22_A          348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG----RVFRLQF--DEFQIVSSSHDDTILIW  410 (435)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS----CCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC----CeEEEEe--CCCEEEEEeCCCEEEEE
Confidence            488899999999999755421        3445556654    8999999  67666665555544333

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=9.3e-27  Score=224.20  Aligned_cols=201  Identities=14%  Similarity=0.128  Sum_probs=175.0

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCC---CeEEEEEcCC-CCEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLG---RTDVMRVNPF-NGVV   75 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l   75 (359)
                      |++|| .+..+..+.+|... .+++|+|++. +|++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +.+|
T Consensus       144 v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  222 (615)
T 1pgu_A          144 FISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV  222 (615)
T ss_dssp             EEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEE
Confidence            56676 77888999999987 9999999997 899999999999999999999999999999   9999999999 9999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEE-e---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------CCc
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKM-L---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------GHA  144 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~-~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~i  144 (359)
                      ++|+.||.|++||+.+++.+..+ .   .|.+.|.+++|+ ++.+|++++.|+.|++||+++++.+..+.       ..+
T Consensus       223 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  301 (615)
T 1pgu_A          223 ITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ  301 (615)
T ss_dssp             EEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred             EEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence            99999999999999999999988 6   899999999999 99999999999999999999998887772       346


Q ss_pred             eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          145 KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .++.|+... +++++.++.|++||+.++ .....+..|..    .|.+++| |+   |++++.||.+.+|
T Consensus       302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          302 VGVVATGNGRIISLSLDGTLNFYELGHD-EVLKTISGHNK----GITALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTEE-EEEEEECCCSS----CEEEEET-TT---TEEEETTSCEEET
T ss_pred             eEEEeCCCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCC----CEEEEEe-cC---cEEECCCCeEEEE
Confidence            778886333 888889999999997764 55566666654    7888888 77   7777777766654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=3.4e-26  Score=202.09  Aligned_cols=184  Identities=17%  Similarity=0.216  Sum_probs=138.8

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      ++|+||+++ +||+| .|++|+|||+.+|+++..+.  +|...|++++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            789999986 77766 59999999999999888775  577789999999999999999999999999998876655443


Q ss_pred             -----------------------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916          100 -----------------------------------------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus       100 -----------------------------------------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                                                               +|...+.++.|++++.+|++++.|++|++||+++++...
T Consensus       107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  186 (318)
T 4ggc_A          107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  186 (318)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred             CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence                                                     345566778888888899999999999999988765322


Q ss_pred             e-------ccCCceeEEEcCCc--eE-E--EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-
Q 041916          139 T-------LPGHAKTLDFSQKG--LL-A--VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-  205 (359)
Q Consensus       139 ~-------~~~~i~~~~~s~~g--l~-~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-  205 (359)
                      .       ..+.+.+++++|++  ++ .  ++.++.|++||.... .... ...+.    ..+..+.|+|++..+++++ 
T Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~-~~~~~----~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLS-AVDAH----SQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEE-EEECS----SCEEEEEEETTTTEEEEEEC
T ss_pred             cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-cccc-cccce----eeeeeeeecccccceEEEEE
Confidence            1       14578888888877  32 2  235688999986554 2222 22232    2799999999999877654 


Q ss_pred             -CCCeEEEE
Q 041916          206 -SMGWSSIL  213 (359)
Q Consensus       206 -~dg~~~i~  213 (359)
                       .||.+.+|
T Consensus       261 ~~d~~i~iw  269 (318)
T 4ggc_A          261 FAQNQLVIW  269 (318)
T ss_dssp             TTTCCEEEE
T ss_pred             cCCCEEEEE
Confidence             45544444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=3.8e-26  Score=203.53  Aligned_cols=171  Identities=13%  Similarity=0.222  Sum_probs=147.5

Q ss_pred             CeEEEe-CCC----cEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCC---------eEEEEEecCCCCe
Q 041916            1 YPYIYN-RDG----TELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMG---------EIVGNFRTGLGRT   63 (359)
Q Consensus         1 ~v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v   63 (359)
                      +|+||| .++    ..+..+.+|... ++++|+|  ++.+|++|+.||.|++||+.++         +.+..+..|...|
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v  113 (351)
T 3f3f_A           34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL  113 (351)
T ss_dssp             EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred             eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence            378999 555    467788889886 9999999  6999999999999999999887         6688888999999


Q ss_pred             EEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcc-----------------------------------------------
Q 041916           64 DVMRVNPF--NGVVSLGHSGGTVTMWKPTTAAP-----------------------------------------------   94 (359)
Q Consensus        64 ~~~~~sp~--~~~l~sg~~dg~v~lwd~~~~~~-----------------------------------------------   94 (359)
                      .+++|+|+  +.+|++|+.||.|++||+++++.                                               
T Consensus       114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  193 (351)
T 3f3f_A          114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA  193 (351)
T ss_dssp             EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred             eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence            99999999  99999999999999999875431                                               


Q ss_pred             -------------eEEEeccCCCeEEEEEcCCC----CEEEEEeCCCeEEEEEcCCc-----------------------
Q 041916           95 -------------LIKMLCHQGPVSALAFHPNG----HLMATSGKECKIKIWDLRKY-----------------------  134 (359)
Q Consensus        95 -------------~~~~~~h~~~v~~i~~~~~~----~~l~~~~~d~~i~iwd~~~~-----------------------  134 (359)
                                   +..+.+|.+.|++++|+|++    .+|++++.||.|++||++++                       
T Consensus       194 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (351)
T 3f3f_A          194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD  273 (351)
T ss_dssp             EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------
T ss_pred             EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc
Confidence                         33445789999999999998    89999999999999999874                       


Q ss_pred             -----------------------eeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          135 -----------------------EVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       135 -----------------------~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                                             .++..+   .+.|++++|+|++  +++++.||.|++||+.++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             -----------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                                   444444   3579999999999  888889999999997765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=2.9e-25  Score=202.32  Aligned_cols=205  Identities=9%  Similarity=0.093  Sum_probs=168.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-E
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-L   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s   77 (359)
                      .|++|| .+++.+..+..|..+.+++|+|++.+| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.+|+ +
T Consensus        13 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~   91 (391)
T 1l0q_A           13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEE
Confidence            379999 889999999999889999999999876 677789999999999999998888665 899999999999775 4


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                      ++.++.|.+||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+  ...+.+++|+|+| 
T Consensus        92 ~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~  170 (391)
T 1l0q_A           92 NMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT  170 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             ECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC
Confidence            556799999999999888777654 468999999999987 67778999999999999888777  4567999999999 


Q ss_pred             -e-EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc---CCCeEEEE
Q 041916          154 -L-LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH---SMGWSSIL  213 (359)
Q Consensus       154 -l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~dg~~~i~  213 (359)
                       + ++++.++.|++||+.++ .....+. +.    ..+.+++|+|++++|++++   .++.+.+|
T Consensus       171 ~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~  229 (391)
T 1l0q_A          171 KVYVANFDSMSISVIDTVTN-SVIDTVK-VE----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI  229 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-EEEEEEE-CS----SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCC-eEEEEEe-cC----CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence             4 34456799999998765 3333333 22    2789999999999988887   45544443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.7e-26  Score=228.48  Aligned_cols=202  Identities=12%  Similarity=0.126  Sum_probs=161.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|+||+ .++.....+. |.. +.+++|+| +.+|++++.|++|++||+.+++++..+. |.+.|++++|+|++.+|++|
T Consensus        40 ~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sg  116 (902)
T 2oaj_A           40 EVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIG  116 (902)
T ss_dssp             EEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEE
T ss_pred             EEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence            489999 5555555554 444 59999999 8899999999999999999999998886 66899999999999999999


Q ss_pred             eCCCeEEEEeCCCCcce-----------EEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEecc-----
Q 041916           79 HSGGTVTMWKPTTAAPL-----------IKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTLP-----  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~-----------~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----  141 (359)
                      +.||.|++||+.++...           ..+.+|.++|++++|+|+ +..|++|+.|+.| +||+++++++..+.     
T Consensus       117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~  195 (902)
T 2oaj_A          117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP  195 (902)
T ss_dssp             ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred             cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence            99999999999987653           223578999999999995 5789999999999 99999998887763     


Q ss_pred             ----------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccce--e---ecccC---------CCCcce
Q 041916          142 ----------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSR--Y---MGHSM---------VKGYQI  189 (359)
Q Consensus       142 ----------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~--~---~~~~~---------~~~~~v  189 (359)
                                      ..|.+++|+|+|  +++++.|+.|++||+.++ ..+..  +   ..|..         .+..+|
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V  274 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKI  274 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence                            348999999999  788889999999998776 33221  1   11210         023379


Q ss_pred             EEEEEeeC----C-CEEEEEcCC
Q 041916          190 GKVSFRPY----E-DVLGIGHSM  207 (359)
Q Consensus       190 ~~~~~~p~----~-~~l~~~~~d  207 (359)
                      ++++|++.    + .+|++|+.+
T Consensus       275 ~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          275 SKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             EEEEEEECSSTTEEEEEEEEECS
T ss_pred             eEEEEEecCCCCCCEEEEeCCCC
Confidence            99999763    2 467777555

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=8.9e-26  Score=203.54  Aligned_cols=206  Identities=12%  Similarity=0.145  Sum_probs=158.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPFNGVVSL-   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s-   77 (359)
                      +|+||| .+|+++..+..+..+.+++|+++.  ++++ .++.|++||+.++ +.+..+..   +...+++++  .++++ 
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~  153 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYS  153 (355)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEE
T ss_pred             EEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEe
Confidence            479999 899999999877667999998864  4443 3789999999988 66666654   455667777  55655 


Q ss_pred             -EeCCCeEEEEeCCCCc---------------c-eEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEe
Q 041916           78 -GHSGGTVTMWKPTTAA---------------P-LIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQT  139 (359)
Q Consensus        78 -g~~dg~v~lwd~~~~~---------------~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~  139 (359)
                       |+.||.|++||+.++.               + +..+.+|.+.|++++|+|+|.+|++|+.|++ |++||+++++++..
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence             6899999999999765               2 7788999999999999999999999999998 99999999998877


Q ss_pred             cc-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc-eeec-----c------------cCCCCcceEEEEE
Q 041916          140 LP-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS-RYMG-----H------------SMVKGYQIGKVSF  194 (359)
Q Consensus       140 ~~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~-~~~~-----~------------~~~~~~~v~~~~~  194 (359)
                      +.     +.|.+++|+|+|  +++++.|+.|++||+........ .+..     +            ......+...++|
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  313 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW  313 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence            74     368999999999  77888999999999865421111 1000     0            0001113467899


Q ss_pred             eeCCCEEEEEcCCCeEEEEE
Q 041916          195 RPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       195 ~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +|++.+|++++.||...+|.
T Consensus       314 ~~d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          314 ISESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SSSSEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEeCCCeEEEEE
Confidence            99999998888888766664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=2.1e-25  Score=205.58  Aligned_cols=237  Identities=17%  Similarity=0.223  Sum_probs=177.9

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      +.|+||++ ++||+|. |++|+|||+.+|+++..+.  +|...|++|+|+|+|.+|++|+.||.|++||+.+++.+..+.
T Consensus       109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~  186 (420)
T 4gga_A          109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  186 (420)
T ss_dssp             BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence            67999975 5777765 8999999999999887665  567789999999999999999999999999999999999999


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC
Q 041916          100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH  173 (359)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~  173 (359)
                      +|...+.+++++  +.+|++|+.|+.+++||.+... .+..+   ...+..+.|+|+|  +++++.|+.+++|+..++..
T Consensus       187 ~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~  264 (420)
T 4gga_A          187 SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  264 (420)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred             CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence            999999988874  6799999999999999998743 34444   4578999999999  77888999999999876543


Q ss_pred             c---cceeecccCCCCcceEEEEEeeCCC-EEEE--EcCCCeEEEE-------------------------------EcC
Q 041916          174 N---YSRYMGHSMVKGYQIGKVSFRPYED-VLGI--GHSMGWSSIL-------------------------------VPG  216 (359)
Q Consensus       174 ~---~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~--~~~dg~~~i~-------------------------------~~~  216 (359)
                      .   ......|    ...|.+++|+|++. ++++  |+.|+.+++|                               .+|
T Consensus       265 ~~~~~~~~~~~----~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          265 GWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             CSCCSEEECCC----SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred             cceeeeeeccc----CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence            2   2333344    34899999999765 4444  4578877664                               224


Q ss_pred             CCCCccccccCCCccCh--hhhchhhhhhhhhcCCCCceeeCCCCCeeeeccc
Q 041916          217 SGEPNFDSWVANPFETS--KQRREKEVRSLLDKLPPETIMLNPSKIGTVREAK  267 (359)
Q Consensus       217 ~~d~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~  267 (359)
                      ..|+.+++|++......  ...+...|..+........| +.....+.++.+.
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWd  392 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWR  392 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEETTTEEEEEC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEE
Confidence            57899999998654432  22345556555432222222 2223445555554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=6.7e-26  Score=198.07  Aligned_cols=166  Identities=15%  Similarity=0.088  Sum_probs=137.4

Q ss_pred             CeEEEe--CCCcEEEEeccCCCe-EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCC---CCeEEEEEcCC
Q 041916            1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL---GRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~sp~   71 (359)
                      +|++|+  .+|+.+..+..|... +.++|+|   ++.+|++|+.|++|+|||+.+|+++.++.+|.   ..+.+++|+|+
T Consensus       158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd  237 (356)
T 2w18_A          158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM  237 (356)
T ss_dssp             EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred             cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence            378898  568888888888876 8999999   77999999999999999999999999998754   36778899999


Q ss_pred             CCEE------------EEEeCCCeEEEEeCCCCcceEEE-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916           72 NGVV------------SLGHSGGTVTMWKPTTAAPLIKM-----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY  134 (359)
Q Consensus        72 ~~~l------------~sg~~dg~v~lwd~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~  134 (359)
                      |.++            ++|+.|++|++||+.+++.+..+     .+|.+.+.+..+  ++.++++++.|++|+|||+.++
T Consensus       238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG  315 (356)
T 2w18_A          238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG  315 (356)
T ss_dssp             TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC
Confidence            9876            56889999999999999877665     366666554444  4889999999999999999999


Q ss_pred             eeeEeccC---Cc-eeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916          135 EVLQTLPG---HA-KTLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus       135 ~~~~~~~~---~i-~~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      +++.++.+   .+ .+++|||+|  +++++.|++|+|||+
T Consensus       316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            99999853   24 568999999  778889999999984

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.2e-25  Score=202.68  Aligned_cols=205  Identities=9%  Similarity=0.039  Sum_probs=151.9

Q ss_pred             EEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeC
Q 041916            4 IYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SLGHS   80 (359)
Q Consensus         4 iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~sg~~   80 (359)
                      ||+ .++..+..+..|... ++++|+|||.+|++|+.++ +++||+.++........  ..+..+++.++++.+ ++|+.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence            566 566777778889887 9999999999999998775 78999998876655443  357888999988877 56788


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCC-----------------------------------CEEEE--EeCC
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNG-----------------------------------HLMAT--SGKE  123 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~-----------------------------------~~l~~--~~~d  123 (359)
                      |++|++||+.+++++..+. |...|.+++|+++.                                   .++++  |+.|
T Consensus        80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~  158 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL  158 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred             ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence            8999999999999888876 66789999888752                                   23444  4678


Q ss_pred             CeEEEEEcCCce---------------e-eEec---cCCceeEEEcCCc--eEEEEcCCc-EEEEcCCCCCCccceee-c
Q 041916          124 CKIKIWDLRKYE---------------V-LQTL---PGHAKTLDFSQKG--LLAVGTGSF-VQILGDFSGSHNYSRYM-G  180 (359)
Q Consensus       124 ~~i~iwd~~~~~---------------~-~~~~---~~~i~~~~~s~~g--l~~~~~d~~-i~i~d~~~~~~~~~~~~-~  180 (359)
                      |.|++||++++.               + +..+   .+.|.+++|+|+|  +++++.|++ |++||+.++ ..+..+. +
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g  237 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRG  237 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEEEECT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC
Confidence            889999988754               1 4444   4579999999999  778889998 999998776 5556665 4


Q ss_pred             -ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          181 -HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       181 -~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                       |..    .|.+++|+|++.+|++|+.||.+.+|....
T Consensus       238 ~h~~----~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          238 LDRA----DVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             TCCS----CEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             CCCC----cEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence             654    899999999999999999999888887644

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2.3e-25  Score=205.72  Aligned_cols=222  Identities=10%  Similarity=0.048  Sum_probs=179.0

Q ss_pred             CeEEEe-CCCcEEE-----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            1 YPYIYN-RDGTELH-----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~-----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      .|++|| .+|+.+.     .+.+|... .+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC
Confidence            489999 7888877     34577776 9999999999999999999999999999999999999999999999999998


Q ss_pred             EEE-EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--------CCCeEEEEEcCCceeeEec--cC
Q 041916           74 VVS-LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--------KECKIKIWDLRKYEVLQTL--PG  142 (359)
Q Consensus        74 ~l~-sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~--~~  142 (359)
                      .++ +++.|+.|.+||+.+++.+..+..+ ..+.+++|+|+|+++++++        .|+.|++||+++++.+..+  .+
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~  303 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG  303 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE
T ss_pred             EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC
Confidence            775 5558999999999999887777654 4589999999999999988        5889999999999887766  56


Q ss_pred             CceeEEEcCCc--eEE-EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe---EEEEEcC
Q 041916          143 HAKTLDFSQKG--LLA-VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW---SSILVPG  216 (359)
Q Consensus       143 ~i~~~~~s~~g--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~---~~i~~~~  216 (359)
                      .+.+++|+|++  +++ ++.++.|.+||+.++ .....+. +.    ..+.+++|+|++++|++++.+..   ...++++
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g  377 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG  377 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CC----CCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence            78999999999  444 467899999998765 3444333 32    27899999999998888876431   1233445


Q ss_pred             CCCCccccccCCC
Q 041916          217 SGEPNFDSWVANP  229 (359)
Q Consensus       217 ~~d~~~~~~~~~~  229 (359)
                      +.|+.+.+|+...
T Consensus       378 ~~dg~v~~~d~~~  390 (433)
T 3bws_A          378 LVLGKVYVIDTTT  390 (433)
T ss_dssp             SSCCEEEEEETTT
T ss_pred             ccceEEEEEECCC
Confidence            5566777776643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.4e-24  Score=197.71  Aligned_cols=209  Identities=11%  Similarity=0.079  Sum_probs=172.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s   77 (359)
                      +|++|| .+++.+..+..+..+.+++|+|++.+|++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|++..| ++
T Consensus        55 ~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  133 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT  133 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE
T ss_pred             eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE
Confidence            378999 88999999998887899999999997754 556799999999999988888755 568999999999877 68


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                      ++.|+.|.+||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+++++.+..+  ...+.+++|+|+| 
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT  212 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred             eCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence            8889999999999998888877654 56999999999987 56778899999999999887776  4568999999999 


Q ss_pred             -eEEEE---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCCeEEEEEcCC
Q 041916          154 -LLAVG---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSSILVPGS  217 (359)
Q Consensus       154 -l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg~~~i~~~~~  217 (359)
                       +++++   .++.|.+||+.++ .....+..+.     .+.+++|+|++++| ++++.++.+.+|....
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGTN-KITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTTT-EEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEecCcCCCcEEEEECCCC-eEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence             55555   5799999998766 4555555443     57899999999877 5667788777776544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.3e-25  Score=203.37  Aligned_cols=193  Identities=10%  Similarity=0.099  Sum_probs=151.9

Q ss_pred             CeEEEeCCCcEEEEeccCCC------eEEEEEecCCCEEEEEecCCeEEEEECCCCe-------EEEEE----ecCCCCe
Q 041916            1 YPYIYNRDGTELHCLKEHGA------VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-------IVGNF----RTGLGRT   63 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v   63 (359)
                      .|+|||..+ ++..+. |..      +.+++|||||++||+|+.||+|++||+.++.       .+..+    .+|...|
T Consensus       108 ~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V  185 (588)
T 2j04_A          108 NVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV  185 (588)
T ss_dssp             CEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred             cEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence            478999544 677777 653      6999999999999999999999999999875       36776    5677899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ  138 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~  138 (359)
                      .+++|+|+|  +++++.|++|++||+..+..   ..++. +|...|.+++|+  |.+||+++ +++|++||+.++.. ..
T Consensus       186 ~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~  260 (588)
T 2j04_A          186 THIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL  260 (588)
T ss_dssp             EEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE
Confidence            999999999  88899999999999988763   35663 788999999999  68999987 69999999998877 43


Q ss_pred             ec--cCCceeEEE--cCCc--eEEEEcCCcEEEEcCCC-----CC-----------------CccceeecccCCCCcceE
Q 041916          139 TL--PGHAKTLDF--SQKG--LLAVGTGSFVQILGDFS-----GS-----------------HNYSRYMGHSMVKGYQIG  190 (359)
Q Consensus       139 ~~--~~~i~~~~~--s~~g--l~~~~~d~~i~i~d~~~-----~~-----------------~~~~~~~~~~~~~~~~v~  190 (359)
                      .+  .+.+.+++|  +|++  +++++.+|+ ++|....     +.                 .....+.     ....|.
T Consensus       261 ~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-----~~~~I~  334 (588)
T 2j04_A          261 KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-----TTLVIH  334 (588)
T ss_dssp             ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-----CEEEEE
T ss_pred             EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-----cceEEE
Confidence            33  457899999  9999  555556888 8887421     10                 0111111     122599


Q ss_pred             EEEEeeCCCEEEEEcC
Q 041916          191 KVSFRPYEDVLGIGHS  206 (359)
Q Consensus       191 ~~~~~p~~~~l~~~~~  206 (359)
                      +++|+|+|+.+|+++.
T Consensus       335 ~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          335 GISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEe
Confidence            9999999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.6e-25  Score=204.66  Aligned_cols=157  Identities=13%  Similarity=0.170  Sum_probs=120.5

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCeEEE-----EEecCCCCeEEEEEcC--------CCCEEEEEeCCCeEEEEeCC
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVG-----NFRTGLGRTDVMRVNP--------FNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~sp--------~~~~l~sg~~dg~v~lwd~~   90 (359)
                      ..+++++.+|++++.|++|++||+.++....     .+.+|.+.|++++|+|        ++++||+|+.|++|+|||+.
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            3445566789999999999999999886543     3568999999999998        78899999999999999999


Q ss_pred             CCcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec----------------------------c
Q 041916           91 TAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL----------------------------P  141 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------~  141 (359)
                      ++.++..+..|..+|.+++|+|++ .+|++++.|++|++||+++++.....                            .
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            988888888999999999999987 47999999999999999886543221                            1


Q ss_pred             CCceeEEEc-CCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916          142 GHAKTLDFS-QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH  181 (359)
Q Consensus       142 ~~i~~~~~s-~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~  181 (359)
                      ..+.++.|+ |+|  +++++.|+.+++||+..+ .....+..|
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~  296 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDS  296 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeee
Confidence            346788886 777  778889999999998765 333444444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1e-23  Score=194.60  Aligned_cols=206  Identities=11%  Similarity=0.052  Sum_probs=167.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .|++|| .++..+..+..|... .+++|+|++.+++ +++.|+.|++||+.+++.+..+..+ ..+.+++|+|++..|++
T Consensus       192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEE
Confidence            378999 888999999888775 9999999998875 5557999999999999988888765 46899999999999998


Q ss_pred             Ee--------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCcee
Q 041916           78 GH--------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKT  146 (359)
Q Consensus        78 g~--------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~  146 (359)
                      ++        .||.|.+||+.+++.+..+ .|.+.+.+++|+|+++.+ ++++.|+.|.+||+.+++.+..+  ...+.+
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  349 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT  349 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCe
Confidence            87        5889999999988766655 456688999999999765 56688999999999999887777  457899


Q ss_pred             EEEcCCc--eEEEEc---------------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC-CC
Q 041916          147 LDFSQKG--LLAVGT---------------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MG  208 (359)
Q Consensus       147 ~~~s~~g--l~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg  208 (359)
                      ++|+|+|  +++++.               ||.|++||+.++ .....+..+.     .+.+++|+|++++|++++. ++
T Consensus       350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~  423 (433)
T 3bws_A          350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEAGN-----QPTGLDVSPDNRYLVISDFLDH  423 (433)
T ss_dssp             EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEECSS-----SEEEEEECTTSCEEEEEETTTT
T ss_pred             EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEecCCC-----CCceEEEcCCCCEEEEEECCCC
Confidence            9999999  555554               469999997665 4444444332     6899999999998877654 66


Q ss_pred             eEEEEE
Q 041916          209 WSSILV  214 (359)
Q Consensus       209 ~~~i~~  214 (359)
                      .+.+|.
T Consensus       424 ~i~v~~  429 (433)
T 3bws_A          424 QIRVYR  429 (433)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            555554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=4.2e-24  Score=190.45  Aligned_cols=169  Identities=21%  Similarity=0.275  Sum_probs=143.3

Q ss_pred             CeEEEeCCCc--EEEEeccCCCe-EEEEEecCC--CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            1 YPYIYNRDGT--ELHCLKEHGAV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         1 ~v~iwd~~g~--~~~~l~~h~~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      .+++||..+.  ....+.+|... .+++|++++  .++++++.|+.|++||+.+++++..+.+|.++|++++|+|++.+|
T Consensus       151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  230 (340)
T 4aow_A          151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC  230 (340)
T ss_dssp             CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEE
Confidence            4789993333  33445677776 999998864  678999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------cCC
Q 041916           76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------PGH  143 (359)
Q Consensus        76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~  143 (359)
                      ++|+.||.|++||+++..++..+.. ...|.+++|+|++.++ +++.|+.|++||++++..+..+            ...
T Consensus       231 ~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          231 ASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             EEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            9999999999999999988888765 4679999999987655 5567899999999988766554            246


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~  171 (359)
                      |++++|+|+|  +++++.||.|+|||+.+|
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            8999999999  788889999999998776

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=8.4e-24  Score=194.59  Aligned_cols=199  Identities=10%  Similarity=0.065  Sum_probs=158.6

Q ss_pred             CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      .|++||.+|..+..+..|... .+++|+|||++|++++.++   .|++||+.+++.. .+..|...+.+++|+|+|+.|+
T Consensus       160 ~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          160 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             eEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEE
Confidence            378999667777788888876 9999999999999999875   9999999998875 5667888999999999999877


Q ss_pred             -EEeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEec--cCCceeEE
Q 041916           77 -LGHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQTL--PGHAKTLD  148 (359)
Q Consensus        77 -sg~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~  148 (359)
                       +++.||.  |.+||+.+++. ..+..|...+.+++|+|||++|++++. ++  .|.+||+.++......  ...+.+++
T Consensus       239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~  317 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD  317 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence             6666654  99999988765 567788889999999999999998886 44  7888899887643322  34678999


Q ss_pred             EcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          149 FSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       149 ~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      |+|+|  +++++.+   ..|.+||+.++. . ..+..+.     .+.+++|+|+|++|++++.++
T Consensus       318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~l~~~~-----~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          318 VSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-----LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-----SCEEEEECTTSSEEEEEEEET
T ss_pred             ECCCCCEEEEEECcCCceEEEEEECCCCC-E-EEecCCC-----CcCCeEEcCCCCEEEEEEcCC
Confidence            99999  5555543   589999987652 2 3333331     689999999999998887765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=6.9e-24  Score=190.75  Aligned_cols=167  Identities=16%  Similarity=0.269  Sum_probs=141.1

Q ss_pred             CeEEEe-CC-CcEE-EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEE--cCCCCE
Q 041916            1 YPYIYN-RD-GTEL-HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV--NPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~-g~~~-~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~   74 (359)
                      .|+||| .+ +..+ ..+.+|... ++++|+|++.+|++++.||.|++||+.+++.+. +..|...|.+++|  +|++.+
T Consensus        65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~  143 (368)
T 3mmy_A           65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC  143 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEE
T ss_pred             cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCE
Confidence            378999 54 6655 788889887 999999999999999999999999999988766 5669999999999  899999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEE--------------------------------------------------------
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKM--------------------------------------------------------   98 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~--------------------------------------------------------   98 (359)
                      |++|+.||.|++||+++++++..+                                                        
T Consensus       144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 3mmy_A          144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD  223 (368)
T ss_dssp             EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred             EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence            999999999999998776533222                                                        


Q ss_pred             ----------------------------------eccCC------------CeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916           99 ----------------------------------LCHQG------------PVSALAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus        99 ----------------------------------~~h~~------------~v~~i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                                                        .+|..            .|++++|+|++++|++++.||.|++||+.
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence                                              22322            69999999999999999999999999999


Q ss_pred             CceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916          133 KYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus       133 ~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      +++++..+   ...|.+++|+|+|  +++++.|+....|+.
T Consensus       304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             TTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99998888   4579999999999  777877775555553

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=6.6e-22  Score=181.93  Aligned_cols=198  Identities=14%  Similarity=0.028  Sum_probs=151.8

Q ss_pred             eEEEeC---CCcEE--EEeccCCCe-EEEEEec--------------CCCEEEEEecC------CeEEEEECCCCeEEEE
Q 041916            2 PYIYNR---DGTEL--HCLKEHGAV-LKLQFLR--------------NHFLLASINKF------GQLRYQDVTMGEIVGN   55 (359)
Q Consensus         2 v~iwd~---~g~~~--~~l~~h~~~-~~l~~s~--------------~~~~l~s~~~d------g~i~iwd~~~~~~~~~   55 (359)
                      |+|||.   +|+++  ..+.+|... ..+++++              .+..++.++.+      +.|++||+. +.....
T Consensus        95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~  173 (415)
T 2hqs_A           95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFV  173 (415)
T ss_dssp             EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEE
T ss_pred             EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEE
Confidence            789995   67776  458888775 6666664              15566665554      799999997 455677


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 041916           56 FRTGLGRTDVMRVNPFNGVVSLGHSGG---TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKEC--KIKIW  129 (359)
Q Consensus        56 ~~~~~~~v~~~~~sp~~~~l~sg~~dg---~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~--~i~iw  129 (359)
                      +..|...+.+++|+|+|+.|++++.++   .|++||+.+++.. .+..|.+.+.+++|+|||++|+ +++.|+  .|++|
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~  252 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  252 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence            788889999999999999999999875   9999999988764 5667888999999999999887 566555  49999


Q ss_pred             EcCCceeeEec--cCCceeEEEcCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          130 DLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       130 d~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      |+.+++.....  .+.+.+++|+|+|  +++++. ++  .|.+||+.++.  ...+..+.    ..+.+++|+|+|++|+
T Consensus       253 d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~----~~~~~~~~spdG~~l~  326 (415)
T 2hqs_A          253 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEG----SQNQDADVSSDGKFMV  326 (415)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSS----SEEEEEEECTTSSEEE
T ss_pred             ECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCC----CcccCeEECCCCCEEE
Confidence            99987764332  4568999999999  555554 34  68888876652  23333333    2789999999999998


Q ss_pred             EEcCC
Q 041916          203 IGHSM  207 (359)
Q Consensus       203 ~~~~d  207 (359)
                      +++.+
T Consensus       327 ~~~~~  331 (415)
T 2hqs_A          327 MVSSN  331 (415)
T ss_dssp             EEEEC
T ss_pred             EEECc
Confidence            87765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=2e-21  Score=169.03  Aligned_cols=200  Identities=12%  Similarity=0.001  Sum_probs=147.7

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecC-CCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTG-LGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~sp~~~~l~   76 (359)
                      .|++|| .++... .+..|... .+++|+|++.+|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++.+|+
T Consensus        23 ~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  100 (297)
T 2ojh_A           23 SIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYA  100 (297)
T ss_dssp             EEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred             eEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEE
Confidence            378999 555554 45556655 9999999999999986 78999999999 8777666555 36789999999999999


Q ss_pred             EEe--CCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcC--CceeeEec--cCCceeE
Q 041916           77 LGH--SGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKECKIKIWDLR--KYEVLQTL--PGHAKTL  147 (359)
Q Consensus        77 sg~--~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~--~~~i~~~  147 (359)
                      +++  .++.  |.+|++.++. ...+..+ ..+.+++|+|++++|+ +++.++.+.+|++.  ++......  ...+.++
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  178 (297)
T 2ojh_A          101 ISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGP  178 (297)
T ss_dssp             EEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEE
T ss_pred             EEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccc
Confidence            998  3344  4445555544 3444433 3589999999999877 77789999999864  34332222  4578999


Q ss_pred             EEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          148 DFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       148 ~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +|+|+|  +++++ .++.+.+|++.........+..+..    .+.+++|+|++++|++++.++
T Consensus       179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY----GDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE----EEEEEEECTTSSEEEEEEEET
T ss_pred             eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc----ccCCeEECCCCCEEEEEEcCC
Confidence            999999  45455 4788999986533344555555543    789999999999998887763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.5e-21  Score=180.32  Aligned_cols=196  Identities=13%  Similarity=0.072  Sum_probs=144.2

Q ss_pred             eEEEEEecCCCEEE----EEecCCeEEEEECCCC--------eE---EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916           21 VLKLQFLRNHFLLA----SINKFGQLRYQDVTMG--------EI---VGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTV   84 (359)
Q Consensus        21 ~~~l~~s~~~~~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v   84 (359)
                      +++++|+|++.+|+    +|+.|+.|++||+.++        +.   +..+.+|...|.+++|+|+ +.+|++|+.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            59999999999999    7888999999998764        22   4555678999999999998 7899999999999


Q ss_pred             EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------c----CCceeEEEcCCc-
Q 041916           85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------P----GHAKTLDFSQKG-  153 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~----~~i~~~~~s~~g-  153 (359)
                      ++||++++..+....+|...|++++|+|+|++|++|+.||+|++||++ +.....+      .    ..+.+++|++++ 
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            999999887766677889999999999999999999999999999999 4444433      1    167899999998 


Q ss_pred             eEEE--EcCC------cEEEEcCCCCCCc-cceeecccC------CCCcceEEEEEeeCCCEEEEEcCC-CeEEEEEcCC
Q 041916          154 LLAV--GTGS------FVQILGDFSGSHN-YSRYMGHSM------VKGYQIGKVSFRPYEDVLGIGHSM-GWSSILVPGS  217 (359)
Q Consensus       154 l~~~--~~d~------~i~i~d~~~~~~~-~~~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d-g~~~i~~~~~  217 (359)
                      ++++  +.+|      .+++|++...... ...+..+..      ....+-..+.+.++.+++++++.. +.+.++....
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            4432  2333      3899998654211 111111110      011122334455788877766654 4567766443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=2.5e-20  Score=166.94  Aligned_cols=207  Identities=10%  Similarity=0.074  Sum_probs=161.8

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCC---------eEEEEEcC
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGR---------TDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~sp   70 (359)
                      |++|| .+++.+..+.....+.+++|+|++.+++ ++..++.|.+||+.+++.+..+..+...         +.+++|+|
T Consensus        71 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  150 (353)
T 3vgz_A           71 VYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD  150 (353)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET
T ss_pred             EEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC
Confidence            78999 8898888888766678999999998554 4555799999999999998888765432         68899999


Q ss_pred             CCCEEEEEe--CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------
Q 041916           71 FNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------  141 (359)
Q Consensus        71 ~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------  141 (359)
                      +++.+++++  .++.|.+||+.+++.+..+..+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.       
T Consensus       151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  230 (353)
T 3vgz_A          151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKE  230 (353)
T ss_dssp             TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC
T ss_pred             CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC
Confidence            998777765  48899999999998888876556668899999999999999999999999999998877662       


Q ss_pred             CCceeEEEcCCc--eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEc
Q 041916          142 GHAKTLDFSQKG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVP  215 (359)
Q Consensus       142 ~~i~~~~~s~~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~  215 (359)
                      ..+.+++|+|+|  +++++. ++.|.+||+.++ .....+...      ....++|+|++++++++. .++.+.+|..
T Consensus       231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          231 HFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECS------SCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC------CCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            135679999999  555554 489999998666 444444332      225689999998655444 4555555543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1e-20  Score=169.36  Aligned_cols=202  Identities=7%  Similarity=-0.030  Sum_probs=162.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCC----------eEEEEEecCCCEEEEEe--cCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGA----------VLKLQFLRNHFLLASIN--KFGQLRYQDVTMGEIVGNFRTGLGRTDVMR   67 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~----------~~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~   67 (359)
                      .|.+|| .+++.+..+..+..          +.+++|+|++.++++++  .++.|.+||+.+++.+..+..+...+.+++
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence            378999 88888888876541          58899999998877765  478999999999999888876666688999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec----cCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEec-c
Q 041916           68 VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC----HQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTL-P  141 (359)
Q Consensus        68 ~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-~  141 (359)
                      |+|++..+++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|+++++++. ++.|.+||+.+++.+..+ .
T Consensus       192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            999999999999999999999999988777664    4556889999999998777665 489999999999887777 2


Q ss_pred             CCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          142 GHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       142 ~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +....++|+|+|  +++++ .++.|.+||+.++ .....+...     ..+.+++|+|+|++|+++..++
T Consensus       272 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          272 PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP-----THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             SSCCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC-----SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC-----CCCCeEEEcCCCCEEEEEEccc
Confidence            334789999999  55555 5799999997666 444444332     2689999999999777766554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=5.4e-20  Score=174.56  Aligned_cols=214  Identities=9%  Similarity=0.030  Sum_probs=161.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEEC--CCCeEEEEEecCCCCeEEEEEcC----CCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDV--TMGEIVGNFRTGLGRTDVMRVNP----FNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp----~~~   73 (359)
                      +|.+|| .+++++.++..+..+.+++|+|||++|++++.|+.|.+||+  .+++++..+.. ...+..++|+|    +|+
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~  238 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR  238 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT
T ss_pred             eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC
Confidence            478999 89999999985555899999999999999999999999999  88999988885 45679999999    999


Q ss_pred             EEEEEe-CCCeEEEEeCCCCcceEEEec----------cCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeE--
Q 041916           74 VVSLGH-SGGTVTMWKPTTAAPLIKMLC----------HQG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQ--  138 (359)
Q Consensus        74 ~l~sg~-~dg~v~lwd~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~--  138 (359)
                      ++++++ .+++|.+||..+++++..+..          |.. .+.++.++|++.. +++...++.|.+||+.+.+.+.  
T Consensus       239 ~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~  318 (543)
T 1nir_A          239 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  318 (543)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred             EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence            999888 489999999999998888764          233 6899999997765 5666788999999998865433  


Q ss_pred             ec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEEc-CCCeEE
Q 041916          139 TL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIGH-SMGWSS  211 (359)
Q Consensus       139 ~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~-~dg~~~  211 (359)
                      .+  ...+.++.|+|+|  +++++ .+++|.+||+.++ +....+.....++......+ ++|+ +.++++++ .++.+.
T Consensus       319 ~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          319 SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred             EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEE
Confidence            33  3467899999999  55555 4789999998776 45554443111111123333 4676 55555554 456666


Q ss_pred             EEEcCC
Q 041916          212 ILVPGS  217 (359)
Q Consensus       212 i~~~~~  217 (359)
                      +|....
T Consensus       397 v~d~~~  402 (543)
T 1nir_A          397 LIGTDP  402 (543)
T ss_dssp             EEECCT
T ss_pred             EEEeCC
Confidence            665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=3.6e-20  Score=164.58  Aligned_cols=208  Identities=9%  Similarity=0.033  Sum_probs=154.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      .|++|| .+|+.+..+..+....+++|+|++++|++++. ++.|.+||+.+++. ...+..+..+..+++|+|++++|++
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  100 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT  100 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred             eEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE
Confidence            378999 88888888776544349999999987666655 88999999999987 7777777777666999999999886


Q ss_pred             EeCCC---eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCe-EEEEEcCCceee-----Eec--cCCce
Q 041916           78 GHSGG---TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECK-IKIWDLRKYEVL-----QTL--PGHAK  145 (359)
Q Consensus        78 g~~dg---~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~-----~~~--~~~i~  145 (359)
                      +..++   .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ..++. |.+|++.....+     ..+  ...+.
T Consensus       101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          101 VTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             CCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred             ecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence            55553   8999999999887777654 446899999999866554 55578 999998753222     122  34578


Q ss_pred             eEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEEcC-CCeEEEEEc
Q 041916          146 TLDFSQKG--LLAVG-TGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSILVP  215 (359)
Q Consensus       146 ~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i~~~  215 (359)
                      .++|+|+|  +++++ .++.|.+||+.++ ..   ...+...     ..+..++|+|+|++|++++. ++.+.+|..
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            99999999  55555 5789999998766 34   3333322     26788999999997766554 444455443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.5e-20  Score=164.64  Aligned_cols=206  Identities=10%  Similarity=0.023  Sum_probs=156.3

Q ss_pred             CeEEEe-CCCcEEEEeccCC---CeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEcC
Q 041916            1 YPYIYN-RDGTELHCLKEHG---AVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGL-----GRTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~---~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp   70 (359)
                      .|++|| .+++.+..+....   .+.+++|+|++.++ ++++.++.|.+||+.+++.+..+....     ..+.+++|+|
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   91 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC
Confidence            378999 7888888887555   57899999999765 555668899999999999887776421     2577899999


Q ss_pred             CCCEEEEEe------------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916           71 FNGVVSLGH------------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        71 ~~~~l~sg~------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                      +|..|++++            .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++  ++.|.+||+.+++.+.
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~  168 (337)
T 1pby_B           92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE  168 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred             CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence            999888886            579999999998887777654 4457889999999988888  6889999998876654


Q ss_pred             ecc---------------------------------------------------------------------CCceeEEE
Q 041916          139 TLP---------------------------------------------------------------------GHAKTLDF  149 (359)
Q Consensus       139 ~~~---------------------------------------------------------------------~~i~~~~~  149 (359)
                      .+.                                                                     ..+.+++|
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence            331                                                                     01235899


Q ss_pred             cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          150 SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       150 s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +|+| .+.++ ++.|.+||+.++ .....+...     ..+.+++|+|++++|++++.++.+.+|...
T Consensus       249 s~dg~~l~~~-~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          249 NPAKTRAFGA-YNVLESFDLEKN-ASIKRVPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CTTSSEEEEE-ESEEEEEETTTT-EEEEEEECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             CCCCCEEEEe-CCeEEEEECCCC-cCcceecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            9999 44444 799999997665 343333322     257899999999988887777766666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=5.4e-21  Score=176.65  Aligned_cols=181  Identities=11%  Similarity=-0.029  Sum_probs=138.6

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCC----------eEEEE-----EecCCCCeEEEEEcCCCCEEE----EEeCC
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMG----------EIVGN-----FRTGLGRTDVMRVNPFNGVVS----LGHSG   81 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~sp~~~~l~----sg~~d   81 (359)
                      .+.+++++++.++++++.++ |++|+....          ..+..     .-.+...|.+++|+|++.+|+    +|+.|
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d  117 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG  117 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence            48999999999999999887 889875311          01111     112556799999999999999    78899


Q ss_pred             CeEEEEeCCCC--------cc---eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec---cCCcee
Q 041916           82 GTVTMWKPTTA--------AP---LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKT  146 (359)
Q Consensus        82 g~v~lwd~~~~--------~~---~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~  146 (359)
                      +.|++||+.++        ++   +..+.+|.+.|++++|+|+ +.+|++++.||+|++||++++..+...   ...+.+
T Consensus       118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~  197 (434)
T 2oit_A          118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS  197 (434)
T ss_dssp             EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred             ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence            99999998654        22   3344579999999999997 899999999999999999998665444   457999


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccC---CCCcceEEEEEeeCCCEEEEE
Q 041916          147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSM---VKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      ++|+|+|  +++++.||.|++||+. + .....+..|..   .+...|.+++|++++.++++.
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            9999999  7888899999999976 3 33333333321   012379999999988877553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.8e-19  Score=160.44  Aligned_cols=214  Identities=9%  Similarity=0.049  Sum_probs=147.8

Q ss_pred             CeEEEe-C-CCc--EEEEeccCCCeEEEEEecCCCEEEEEecC-CeEEEEECC--CCe--EEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYN-R-DGT--ELHCLKEHGAVLKLQFLRNHFLLASINKF-GQLRYQDVT--MGE--IVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~-~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~sp~   71 (359)
                      .|++|+ . +|.  .+..+.....+.+++|+|++.+|++++.+ +.|.+|++.  ++.  .+..+..+. .+.+++|+|+
T Consensus        16 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d   94 (343)
T 1ri6_A           16 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ   94 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT
T ss_pred             eEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC
Confidence            378998 3 353  34444444445999999999988888876 999999997  555  344555444 7899999999


Q ss_pred             CCEEEEEe-CCCeEEEEeCC---CCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-ceeeE----ec-
Q 041916           72 NGVVSLGH-SGGTVTMWKPT---TAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEVLQ----TL-  140 (359)
Q Consensus        72 ~~~l~sg~-~dg~v~lwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~----~~-  140 (359)
                      +.+|++++ .++.|.+||+.   +...+..+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ ++...    .+ 
T Consensus        95 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A           95 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence            99776665 48899999994   33344444433 4588999999999988887 899999999987 54321    22 


Q ss_pred             ---cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecccC--CCCcceEEEEEeeCCCEEEEE-cCCC
Q 041916          141 ---PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGHSM--VKGYQIGKVSFRPYEDVLGIG-HSMG  208 (359)
Q Consensus       141 ---~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~-~~dg  208 (359)
                         ...+.+++|+|+|  +++++ .++.|.+|++.......   ........  .....+.+++|+|++++|+++ ..++
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence               2357889999999  54555 67899999975321111   11111100  012356789999999877643 4566


Q ss_pred             eEEEEEcC
Q 041916          209 WSSILVPG  216 (359)
Q Consensus       209 ~~~i~~~~  216 (359)
                      .+.+|...
T Consensus       254 ~i~v~d~~  261 (343)
T 1ri6_A          254 LITVFSVS  261 (343)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEc
Confidence            66666544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=9.6e-20  Score=162.70  Aligned_cols=204  Identities=11%  Similarity=-0.034  Sum_probs=151.7

Q ss_pred             CeEEEe-CCCcEEEEeccCC--CeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCC------CCeEEEEEcC
Q 041916            1 YPYIYN-RDGTELHCLKEHG--AVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGL------GRTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~--~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp   70 (359)
                      .|++|| .+++.+..+..+.  .+..++|+|++++++ +++.++.|.+||+.+++.+..+..+.      ..+.+++|+|
T Consensus        22 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp  101 (349)
T 1jmx_B           22 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP  101 (349)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence            378999 8888888888766  568999999998654 55578999999999999887776433      2378999999


Q ss_pred             CCCEEEEEeCC------------CeEEEEeCCCCc---ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916           71 FNGVVSLGHSG------------GTVTMWKPTTAA---PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        71 ~~~~l~sg~~d------------g~v~lwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                      +|++|++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +++++.  .|.+||+.+++
T Consensus       102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~  177 (349)
T 1jmx_B          102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGK  177 (349)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCC
T ss_pred             CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCc
Confidence            99999988865            899999998754   333443 344688999999999 666544  49999999887


Q ss_pred             eeEeccC-----------------------------------------------------------------------Cc
Q 041916          136 VLQTLPG-----------------------------------------------------------------------HA  144 (359)
Q Consensus       136 ~~~~~~~-----------------------------------------------------------------------~i  144 (359)
                      .+..++.                                                                       .+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence            6655421                                                                       23


Q ss_pred             eeEEEcC-Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          145 KTLDFSQ-KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       145 ~~~~~s~-~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      .+++|+| +| ++.++ ++.|.+||+.++ .....+...     ..+.+++|+|++++|++++.++.+.+|..
T Consensus       258 ~~~~~sp~dg~~l~~~-~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV-LNRLAKYDLKQR-KLIKAANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             EEEEECSSCTTEEEEE-ESEEEEEETTTT-EEEEEEECS-----SCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             eeeEecCCCCCEEEEE-cCeEEEEECccC-eEEEEEcCC-----CCccceEECCCCCEEEEecCCCeEEEEec
Confidence            4567789 88 44444 889999998765 333333322     15778999999998877766666666554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=3.4e-19  Score=158.65  Aligned_cols=210  Identities=13%  Similarity=0.148  Sum_probs=144.1

Q ss_pred             eEEEe-C--CCc--EEEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECC---CCeEEEEEecCCCCeEEEEEcCCC
Q 041916            2 PYIYN-R--DGT--ELHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVT---MGEIVGNFRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         2 v~iwd-~--~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~~   72 (359)
                      |.+|+ .  +|.  .+..+..+..+.+++|+|++.+|++++. ++.|.+||+.   ++..+..+..+ ..+.+++|+|++
T Consensus        62 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg  140 (343)
T 1ri6_A           62 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN  140 (343)
T ss_dssp             EEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS
T ss_pred             EEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC
Confidence            67888 4  555  3455665566699999999998866654 8899999994   33455555544 468899999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCC-CcceE----EEec-cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC--cee--eEec
Q 041916           73 GVVSLGH-SGGTVTMWKPTT-AAPLI----KMLC-HQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK--YEV--LQTL  140 (359)
Q Consensus        73 ~~l~sg~-~dg~v~lwd~~~-~~~~~----~~~~-h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~--~~~--~~~~  140 (359)
                      .++++++ .++.|.+||+.+ ++...    .+.. ....+.+++|+|+|+++++++ .++.|.+||+..  +..  ...+
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            9888777 899999999987 54322    2232 234788999999999876655 789999999954  332  2222


Q ss_pred             ---cC------CceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CC
Q 041916          141 ---PG------HAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SM  207 (359)
Q Consensus       141 ---~~------~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d  207 (359)
                         +.      .+..++|+|+|  +++++ .++.|.+||+.........+..... .. .+.+++|+|++++|++++ .+
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~  298 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKS  298 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTT
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCC
Confidence               11      34579999999  44444 6799999997632112222211111 11 488999999999877766 35


Q ss_pred             CeEEEEE
Q 041916          208 GWSSILV  214 (359)
Q Consensus       208 g~~~i~~  214 (359)
                      +.+.+|.
T Consensus       299 ~~v~v~~  305 (343)
T 1ri6_A          299 HHISVYE  305 (343)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            5555553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=1.2e-19  Score=172.19  Aligned_cols=184  Identities=9%  Similarity=0.047  Sum_probs=147.0

Q ss_pred             EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEEEeccC
Q 041916           25 QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP--TTAAPLIKMLCHQ  102 (359)
Q Consensus        25 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~--~~~~~~~~~~~h~  102 (359)
                      +|+|++.++++++.|++|.+||..+++++..+..+.. +++++|+|+|++|++++.|+.|.+||+  .+++.+..+.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            4889999999999999999999999999999985444 899999999999999999999999999  78888888774 4


Q ss_pred             CCeEEEEEcC----CCCEEEEEeC-CCeEEEEEcCCceeeEeccC--------------CceeEEEcCCc---eEEEEcC
Q 041916          103 GPVSALAFHP----NGHLMATSGK-ECKIKIWDLRKYEVLQTLPG--------------HAKTLDFSQKG---LLAVGTG  160 (359)
Q Consensus       103 ~~v~~i~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~--------------~i~~~~~s~~g---l~~~~~d  160 (359)
                      ..+..++|+|    ||+++++++. +++|.+||..+++++..+..              .+.++.++|++   +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            4579999999    9999999884 89999999999988877621              46789999987   4444567


Q ss_pred             CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916          161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILV  214 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~  214 (359)
                      +.|.+||+.+..........+    +..+.+++|+|+|++|++++ .++.+.+|.
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~----~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGA----APFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEEC----CSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             CeEEEEEecCCCcceeEEecc----CcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence            999999977653222112222    22688899999999776554 456555544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=3.6e-19  Score=158.10  Aligned_cols=211  Identities=10%  Similarity=0.133  Sum_probs=149.2

Q ss_pred             eEEEe-CCCcE-EEEeccCCCeEE-EEEecCCCEEEEEecCC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTE-LHCLKEHGAVLK-LQFLRNHFLLASINKFG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~-~~~l~~h~~~~~-l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |++|| .++.. ...+..+..+.. ++|+|++++|+++..++   .|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus        64 i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l  142 (331)
T 3u4y_A           64 LVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGL  142 (331)
T ss_dssp             EEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCE
T ss_pred             EEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEE
Confidence            78999 77777 778888888855 99999999998555443   8999999999988887755 456899999999754


Q ss_pred             -EEEeCCCe-EEEEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCcee---eEec--cCC
Q 041916           76 -SLGHSGGT-VTMWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEV---LQTL--PGH  143 (359)
Q Consensus        76 -~sg~~dg~-v~lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~---~~~~--~~~  143 (359)
                       +++..++. |.+|++.....+.    ..........+++|+|+|+++++++ .++.|.+||+.+++.   +..+  ...
T Consensus       143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          143 ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC
Confidence             45556688 9999987644332    1223345678999999999765555 689999999998887   6666  446


Q ss_pred             ceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc-cceeecc----cCCCCcceEEEEEeeCCCEEEEEcC-CCeEEEEE
Q 041916          144 AKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHN-YSRYMGH----SMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSILV  214 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~-~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i~~  214 (359)
                      +..++|+|+|  +++++ .++.|.+||+.++... +..+..+    .. .......++|+|++++|++++. ++.+.+|.
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-PLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-GGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC-CcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            7899999999  44443 4578999998765220 1111111    11 1112356899999997755444 33444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=6.7e-20  Score=180.16  Aligned_cols=202  Identities=8%  Similarity=0.016  Sum_probs=150.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCC----eEEEEEecCCCEEEEEecC---------CeEEEEECCCCeEEEEEe---cCCCCe
Q 041916            1 YPYIYN-RDGTELHCLKEHGA----VLKLQFLRNHFLLASINKF---------GQLRYQDVTMGEIVGNFR---TGLGRT   63 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~----~~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~---~~~~~v   63 (359)
                      +|++|| .+|+....+..|..    +.+++|||||++|++++.+         +.|.+||+.+++. ..+.   .|...+
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~  116 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKL  116 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCC
T ss_pred             CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccc
Confidence            489999 88888888887764    6999999999999998764         7889999998876 3443   334458


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe------------------EEEEEcCCCCEEEEEeCCC-
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV------------------SALAFHPNGHLMATSGKEC-  124 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v------------------~~i~~~~~~~~l~~~~~d~-  124 (359)
                      ..++|||||+.|++++. +.|++||+.+++.......+...+                  .+++|+|||++|++++.|+ 
T Consensus       117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~  195 (723)
T 1xfd_A          117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS  195 (723)
T ss_dssp             SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred             cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence            89999999999999886 799999999887766555444333                  7899999999999987553 


Q ss_pred             ---------------------------------eEEEEEcCCceeeEecc---------CCceeEEEcCCc-eE-EEEc-
Q 041916          125 ---------------------------------KIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG-LL-AVGT-  159 (359)
Q Consensus       125 ---------------------------------~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g-l~-~~~~-  159 (359)
                                                       .|++||+.+++....+.         ..+.+++||||| ++ +.+. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  275 (723)
T 1xfd_A          196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (723)
T ss_dssp             TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence                                             79999999887544442         246889999999 44 4432 


Q ss_pred             ---CCcEEEEcCCCCCCccceeecccCCCCcce----EEEEEeeCCCEEEEE--cCCC
Q 041916          160 ---GSFVQILGDFSGSHNYSRYMGHSMVKGYQI----GKVSFRPYEDVLGIG--HSMG  208 (359)
Q Consensus       160 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~l~~~--~~dg  208 (359)
                         +..|.+||+.++ .....+..+.   ...+    ..++|+|+|+.|+..  ..+|
T Consensus       276 ~~~~~~i~~~d~~~g-~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          276 AQNVSILTLCDATTG-VCTKKHEDES---EAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             TSCEEEEEEEETTTC-CEEEEEEEEC---SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             CCCeEEEEEEeCCCC-cceEEEEecc---CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence               257999997766 3333333321   1123    378999999977754  4556

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=9.7e-20  Score=179.54  Aligned_cols=180  Identities=8%  Similarity=0.070  Sum_probs=141.5

Q ss_pred             eEEEEEecCCCEEEEEec-CC-----eEEEEECCCCeEEEEEecCCC------------------------CeEEEEEcC
Q 041916           21 VLKLQFLRNHFLLASINK-FG-----QLRYQDVTMGEIVGNFRTGLG------------------------RTDVMRVNP   70 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~sp   70 (359)
                      +.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .+.+++|||
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            589999999999999998 88     999999999987776665432                        378999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC--C---
Q 041916           71 FNGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG--H---  143 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~---  143 (359)
                      ||++|++++. +.|.+||+.++.  .+..+..|...+.+++|+|||++|++++. +.|++||+.++........  .   
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~  196 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIG  196 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcccee
Confidence            9999999886 899999999873  44556678888999999999999999884 6999999998876654421  1   


Q ss_pred             --------------ceeEEEcCCc--eEEEEcCC---------------------------------cEEEEcCCC-CCC
Q 041916          144 --------------AKTLDFSQKG--LLAVGTGS---------------------------------FVQILGDFS-GSH  173 (359)
Q Consensus       144 --------------i~~~~~s~~g--l~~~~~d~---------------------------------~i~i~d~~~-~~~  173 (359)
                                    +.+++|||||  +++++.|+                                 .|.+||+.+ + .
T Consensus       197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-~  275 (741)
T 2ecf_A          197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA-Q  275 (741)
T ss_dssp             ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC-C
T ss_pred             ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC-c
Confidence                          4789999999  66665554                                 788999766 5 3


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ........ . +...+.+++| |||++|++++.
T Consensus       276 ~~~~~~~~-~-~~~~~~~~~~-pDg~~l~~~~~  305 (741)
T 2ecf_A          276 TQWIDLGK-E-QDIYLARVNW-RDPQHLSFQRQ  305 (741)
T ss_dssp             CEEECCCS-C-SSEEEEEEEE-EETTEEEEEEE
T ss_pred             eEEecCCC-C-cceEEEEEEe-CCCCEEEEEEe
Confidence            33222220 0 2337999999 99999987654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=4.8e-20  Score=160.26  Aligned_cols=200  Identities=12%  Similarity=0.109  Sum_probs=146.0

Q ss_pred             eEEEe-CC-CcEEEEeccCC-Ce-EEEEEecCCCEEEEEec--C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN-RD-GTELHCLKEHG-AV-LKLQFLRNHFLLASINK--F--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd-~~-g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~--d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      |++|| .+ +.....+..|. .. .+++|+|++.+|++++.  +  ..|.+|++.++. ...+..+ ..+.+++|+|++.
T Consensus        64 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~  141 (297)
T 2ojh_A           64 LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGK  141 (297)
T ss_dssp             EEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSS
T ss_pred             EEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCC
Confidence            78999 66 77766666663 33 89999999999999883  3  455555555554 3444444 3588999999999


Q ss_pred             EEE-EEeCCCeEEEEeCCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC-CceeeEec---cCCcee
Q 041916           74 VVS-LGHSGGTVTMWKPTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR-KYEVLQTL---PGHAKT  146 (359)
Q Consensus        74 ~l~-sg~~dg~v~lwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~---~~~i~~  146 (359)
                      .|+ +++.++.+.||+++. ......+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+   ...+.+
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF  221 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred             EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence            777 788899999998642 334556667888999999999999888766 58899999886 44445555   345788


Q ss_pred             EEEcCCc--eEEEEcC-----------CcEEEEcCCCCCCccc--eeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          147 LDFSQKG--LLAVGTG-----------SFVQILGDFSGSHNYS--RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d-----------~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ++|+|+|  +++++.+           +.|.+||+.++ ....  .+..|..    .+.+++|+|++++|++++.+.
T Consensus       222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLFGGQG----TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEEESTT----TSCSCCBCTTSSEEEEEEECC
T ss_pred             eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccCCCCc----ccccceECCCCCEEEEEEecc
Confidence            9999999  5555544           56999997665 3322  2224433    788999999999988877653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.7e-18  Score=154.93  Aligned_cols=209  Identities=12%  Similarity=0.123  Sum_probs=142.1

Q ss_pred             eEEEe-CCCc--EEEEeccCCC-eEEEEEecCCCEEEEEe-cCCeEEEEECC-CCe--EEEEEecC---------CCCeE
Q 041916            2 PYIYN-RDGT--ELHCLKEHGA-VLKLQFLRNHFLLASIN-KFGQLRYQDVT-MGE--IVGNFRTG---------LGRTD   64 (359)
Q Consensus         2 v~iwd-~~g~--~~~~l~~h~~-~~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~--~~~~~~~~---------~~~v~   64 (359)
                      |++|+ .+|.  .+..+..+.. +..++|+|+|++|++++ .++.|.+||+. ++.  .+..+...         ...+.
T Consensus        65 v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~  144 (347)
T 3hfq_A           65 IAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH  144 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred             EEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence            78899 5555  3444444544 49999999999888887 68999999996 333  33333321         12488


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCC-CCcce--EEEeccC-CCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCC--cee-
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPT-TAAPL--IKMLCHQ-GPVSALAFHPNGHLMATS-GKECKIKIWDLRK--YEV-  136 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~-~~~~~--~~~~~h~-~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~--~~~-  136 (359)
                      +++|+|+|++++++..++.|.+|++. ++...  ..+..+. ..+..++|+|||++++++ ..++.|.+|++..  +.. 
T Consensus       145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999999977777778999999998 44332  2222222 357889999999976664 5688999999874  442 


Q ss_pred             -eEec---c------CCceeEEEcCCc--eEE-EEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          137 -LQTL---P------GHAKTLDFSQKG--LLA-VGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       137 -~~~~---~------~~i~~~~~s~~g--l~~-~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                       +..+   .      ..+..++|+|+|  +++ ...++.|.+|++....  ..+..+..+    +..+.+++|+|+|++|
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~----~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE----GDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS----SSCCCEEEECTTSSEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC----CCCcCeEEECCCCCEE
Confidence             2222   2      236789999999  434 4457999999975332  122222222    2368899999999988


Q ss_pred             EEEcCC-CeEEEEE
Q 041916          202 GIGHSM-GWSSILV  214 (359)
Q Consensus       202 ~~~~~d-g~~~i~~  214 (359)
                      ++++.+ +.+.+|.
T Consensus       301 ~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          301 VVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEEcCCCcEEEEE
Confidence            776654 5555553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.3e-18  Score=155.84  Aligned_cols=212  Identities=12%  Similarity=0.062  Sum_probs=140.1

Q ss_pred             eEEEe-CCCcEE--EEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN-RDGTEL--HCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd-~~g~~~--~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      |+.|| .+|...  ..+.....+..++|+|+|+ |++++.   ++.|.+||+.++.  .+..+..+...+..++|+|+|+
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence            44455 466543  3344445568999999999 555544   6899999998776  4445555677889999999999


Q ss_pred             EEEEEe-CCCeEEEEeCCC-Cc--ceEEEec---------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Cceee--
Q 041916           74 VVSLGH-SGGTVTMWKPTT-AA--PLIKMLC---------HQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVL--  137 (359)
Q Consensus        74 ~l~sg~-~dg~v~lwd~~~-~~--~~~~~~~---------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~--  137 (359)
                      +|++++ .++.|.+|++.. +.  .+..+..         +...+.+++|+|+|+++++...++.|.+||+. ++...  
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            888887 789999999963 22  2222221         11248899999999966666678899999998 45432  


Q ss_pred             Eec---c-CCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecccC--CCCcceEEEEEeeCCCEEEE-E
Q 041916          138 QTL---P-GHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGHSM--VKGYQIGKVSFRPYEDVLGI-G  204 (359)
Q Consensus       138 ~~~---~-~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~-~  204 (359)
                      ..+   . ..+..++|+|+|  +++++ .++.|.+|++.......   ..+.....  .....+..++|+|+|++|++ +
T Consensus       179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          179 SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            222   2 256789999999  44444 56899999865421111   11221110  01135889999999997744 3


Q ss_pred             cCCCeEEEEE
Q 041916          205 HSMGWSSILV  214 (359)
Q Consensus       205 ~~dg~~~i~~  214 (359)
                      ..++.+.+|.
T Consensus       259 ~~~~~v~v~~  268 (347)
T 3hfq_A          259 RGYNTLAVFA  268 (347)
T ss_dssp             ETTTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            3455555554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=2.3e-19  Score=175.93  Aligned_cols=201  Identities=10%  Similarity=0.066  Sum_probs=146.5

Q ss_pred             CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCC-----CeEEEEEecCCCC-----------
Q 041916            1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTM-----GEIVGNFRTGLGR-----------   62 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~-----------   62 (359)
                      .|++|| .++... .+..+.. +.+++|||||++|+++ .++.|++||+.+     ++.......+...           
T Consensus       102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            378999 555544 4444544 4889999999999985 689999999998     7765544433332           


Q ss_pred             ---eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCcceEEEe--ccCCC
Q 041916           63 ---TDVMRVNPFNGVVSLGH---------------------------------SGGTVTMWKPTTAAPLIKML--CHQGP  104 (359)
Q Consensus        63 ---v~~~~~sp~~~~l~sg~---------------------------------~dg~v~lwd~~~~~~~~~~~--~h~~~  104 (359)
                         +.+++|||||++|++++                                 .++.|.+||+.+++......  .|...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               48999999999999987                                 44679999999886544332  46677


Q ss_pred             eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceeeEec-----cC---CceeEEEcC--Cc--eEEEEcCCcEEEEc
Q 041916          105 VSALAFHPNGHLMATSGKEC-----KIKIWDLRKYEVLQTL-----PG---HAKTLDFSQ--KG--LLAVGTGSFVQILG  167 (359)
Q Consensus       105 v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~-----~~---~i~~~~~s~--~g--l~~~~~d~~i~i~d  167 (359)
                      +.+++|+|||++|++++.++     .|.+||+.+++....+     ..   .+.+++|+|  +|  +++++.++.+.||+
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence            99999999999999988775     8999999998333222     11   246789999  99  44555678888887


Q ss_pred             CCCCCCccceeecccCCCCcceEE-EEEeeCCCEEEEEcCC
Q 041916          168 DFSGSHNYSRYMGHSMVKGYQIGK-VSFRPYEDVLGIGHSM  207 (359)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d  207 (359)
                      +.........+..+..    .+.+ ++|+|+++.|++++.+
T Consensus       340 ~~~~~~~~~~l~~~~~----~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          340 YDTTGRLIRQVTKGEW----EVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             EETTSCEEEECCCSSS----CEEEEEEECTTSSEEEEEESS
T ss_pred             EECCCCEEEecCCCCe----EEEeeeEEcCCCCEEEEEecC
Confidence            5433344455554433    5766 7999999987665544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=5e-19  Score=173.55  Aligned_cols=191  Identities=11%  Similarity=0.112  Sum_probs=140.0

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----Ccc
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-----AAP   94 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-----~~~   94 (359)
                      .+.+++|+|| ..++.+. ++.|++||+.+++... +..+...+.+++|||||+.|+++ .|+.|.+||+.+     ++.
T Consensus        83 ~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             CceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            4699999999 5555543 5999999999887644 44566778999999999999985 679999999998     766


Q ss_pred             eEEEeccCCC--------------eEEEEEcCCCCEEEEEe---------------------------------CCCeEE
Q 041916           95 LIKMLCHQGP--------------VSALAFHPNGHLMATSG---------------------------------KECKIK  127 (359)
Q Consensus        95 ~~~~~~h~~~--------------v~~i~~~~~~~~l~~~~---------------------------------~d~~i~  127 (359)
                      ......+...              +.+++|+|||++|++++                                 .+..|.
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            5443333332              48899999999999987                                 456899


Q ss_pred             EEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEEEEe
Q 041916          128 IWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR  195 (359)
Q Consensus       128 iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  195 (359)
                      +||+.+++.....     ...+.+++|+|+|  +++++.++     .|.+||+.++.................+.+++|+
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s  318 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL  318 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence            9999998765444     1357899999999  55555554     8999998766222222221111011134678999


Q ss_pred             e--CCCEEEEEcCCCeEEEEE
Q 041916          196 P--YEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       196 p--~~~~l~~~~~dg~~~i~~  214 (359)
                      |  +|+++++++.+|...+|.
T Consensus       319 p~~dg~~l~~~~~~g~~~l~~  339 (706)
T 2z3z_A          319 PGSNNQFIWQSRRDGWNHLYL  339 (706)
T ss_dssp             TTCSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCEEEEEEccCCccEEEE
Confidence            9  999999998888766654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=7.2e-19  Score=173.30  Aligned_cols=208  Identities=10%  Similarity=0.052  Sum_probs=151.6

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC--------------
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR--------------   62 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------------   62 (359)
                      .|++|| .++.  .+..+..|... .+++|||||++|++++ ++.|++||+.+++.......+...              
T Consensus       130 ~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~  208 (741)
T 2ecf_A          130 ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM  208 (741)
T ss_dssp             EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred             cEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence            378999 5552  45566777655 9999999999999887 569999999988776554444332              


Q ss_pred             --eEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC-CcceEEEe--ccCCC
Q 041916           63 --TDVMRVNPFNGVVSLGHSGG---------------------------------TVTMWKPTT-AAPLIKML--CHQGP  104 (359)
Q Consensus        63 --v~~~~~sp~~~~l~sg~~dg---------------------------------~v~lwd~~~-~~~~~~~~--~h~~~  104 (359)
                        +.+++|||||+.|++++.|+                                 .|.+||+.+ ++......  .|...
T Consensus       209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  288 (741)
T 2ecf_A          209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY  288 (741)
T ss_dssp             CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred             ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence              47899999999999987765                                 789999988 77554332  47778


Q ss_pred             eEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCceeeEecc----C---CceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916          105 VSALAFHPNGHLMATSGK-----ECKIKIWDLRKYEVLQTLP----G---HAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       105 v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~----~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                      +.+++| |||++|++++.     +..|.+||+.++++...+.    .   .+.+++|+|+|  +++++.+|.+.||.+..
T Consensus       289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred             EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence            999999 99999987764     5689999999987765552    1   34689999999  45555677777776443


Q ss_pred             CCCccceeecccCCCCcceEEE-EEeeCCCEEEEE-cCCC--eEEEEEc
Q 041916          171 GSHNYSRYMGHSMVKGYQIGKV-SFRPYEDVLGIG-HSMG--WSSILVP  215 (359)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~-~~dg--~~~i~~~  215 (359)
                      ... ...+..+..    .+.++ .|+|+++.|++. +.++  ...+|..
T Consensus       368 ~~~-~~~l~~~~~----~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          368 KGK-AAALTHGNW----SVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             SSC-EEESCCSSS----CEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             CCC-eeeeeecce----EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            323 455555533    67777 599999877544 4444  5556553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=1.8e-18  Score=176.81  Aligned_cols=202  Identities=14%  Similarity=0.054  Sum_probs=159.1

Q ss_pred             eEEEeCCCcEEEEeccCC------------CeEEEEEe-cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-CeEEEE
Q 041916            2 PYIYNRDGTELHCLKEHG------------AVLKLQFL-RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMR   67 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~------------~~~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~   67 (359)
                      |++||..+..+..+..+.            .+.+++|+ |||.+|++++ ++.|.+|++.++... .+..|.. .+..++
T Consensus       267 i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~  344 (1045)
T 1k32_A          267 IYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRG  344 (1045)
T ss_dssp             EEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEEC
T ss_pred             EEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeee
Confidence            677874344444665532            34899999 9999998887 789999999887754 4666777 899999


Q ss_pred             EcCCCCEEEEEeCCCeEE-EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCC
Q 041916           68 VNPFNGVVSLGHSGGTVT-MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGH  143 (359)
Q Consensus        68 ~sp~~~~l~sg~~dg~v~-lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~  143 (359)
                      |+ +|..|++++.++.+. +||+.++... .+..|...+.+++|+|||++|++++.++.|++||+.+++....+   .+.
T Consensus       345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             SS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             Ec-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence            99 999999999888898 9999876543 44478889999999999999999999999999999998876655   456


Q ss_pred             ceeEEEcCCc--eEEEEcC----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE
Q 041916          144 AKTLDFSQKG--LLAVGTG----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS  211 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~  211 (359)
                      +.+++|||+|  +++++.+          +.|++||+.++ . ...+..|..    .+.+++|+|+|++|++++.++...
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~----~~~~~~~spdG~~l~~~s~~~~~~  496 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENS----HDYAPAFDADSKNLYYLSYRSLDP  496 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSS----BEEEEEECTTSCEEEEEESCCCCC
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCc----ccCCceEcCCCCEEEEEecccCCc
Confidence            7999999999  5555543          48999997765 3 444555543    688899999999999988876544


Q ss_pred             EE
Q 041916          212 IL  213 (359)
Q Consensus       212 i~  213 (359)
                      .|
T Consensus       497 ~~  498 (1045)
T 1k32_A          497 SP  498 (1045)
T ss_dssp             EE
T ss_pred             Cc
Confidence            44

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=4e-19  Score=174.59  Aligned_cols=205  Identities=13%  Similarity=0.067  Sum_probs=147.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCC----eEEEEEecCCCEEEEEec---------CCeEEEEECCCCeEE--EEEecCCCCeE
Q 041916            1 YPYIYN-RDGTELHCLKEHGA----VLKLQFLRNHFLLASINK---------FGQLRYQDVTMGEIV--GNFRTGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~----~~~l~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~--~~~~~~~~~v~   64 (359)
                      +|++|| .+|+....+.+|..    +.+++|||||++|++++.         ++.|++||+.+++.+  ..+   ...+.
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~  113 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ  113 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC
T ss_pred             CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc
Confidence            488999 78888777776644    689999999999998876         789999999998763  222   25688


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE-eccCCCe-----------------EEEEEcCCCCEEEEEeCCC--
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-LCHQGPV-----------------SALAFHPNGHLMATSGKEC--  124 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-~~h~~~v-----------------~~i~~~~~~~~l~~~~~d~--  124 (359)
                      .++|||||+.|++++ ++.|++||+.++...... .++...|                 .+++|+|||++|++++.|.  
T Consensus       114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~  192 (719)
T 1z68_A          114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD  192 (719)
T ss_dssp             CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred             cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence            999999999999885 789999999887664322 2332222                 4899999999999988652  


Q ss_pred             --------------------------------eEEEEEcCCceee---E-----ec---cCCceeEEEcCCc-eEEEE-c
Q 041916          125 --------------------------------KIKIWDLRKYEVL---Q-----TL---PGHAKTLDFSQKG-LLAVG-T  159 (359)
Q Consensus       125 --------------------------------~i~iwd~~~~~~~---~-----~~---~~~i~~~~~s~~g-l~~~~-~  159 (359)
                                                      .|++||+.++...   .     .+   ...+.+++||||+ +++.. .
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~  272 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK  272 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence                                            7899999987642   1     11   2357899999999 44432 2


Q ss_pred             C----CcEEEEc----CCCCCCcccee----ecccCCCCcceE-----EEEEeeCCCEEEE--EcCCCeEEEEE
Q 041916          160 G----SFVQILG----DFSGSHNYSRY----MGHSMVKGYQIG-----KVSFRPYEDVLGI--GHSMGWSSILV  214 (359)
Q Consensus       160 d----~~i~i~d----~~~~~~~~~~~----~~~~~~~~~~v~-----~~~~~p~~~~l~~--~~~dg~~~i~~  214 (359)
                      .    ..|.+||    +.++ .....+    ..|..    .+.     .++|+|+|+.|+.  +..+|...++.
T Consensus       273 ~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~  341 (719)
T 1z68_A          273 RVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTG----WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY  341 (719)
T ss_dssp             SSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSS----CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred             cccCeEEEEEEcccCCCCCC-ceEEEEecccccCCc----eEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence            2    2488898    6555 333333    23432    455     7899999996544  55566555543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=2.8e-18  Score=168.64  Aligned_cols=208  Identities=9%  Similarity=0.034  Sum_probs=147.1

Q ss_pred             eEEEe-CCCcEEEEecc---CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-------------
Q 041916            2 PYIYN-RDGTELHCLKE---HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT-------------   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~---h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-------------   63 (359)
                      |++|| .+|.. ..+..   |.. +..++|||||+.||+++. +.|++||+.+++.......+...+             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            67999 66654 44443   333 478999999999999885 799999999988766655544333             


Q ss_pred             -----EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCcceEEEecc---
Q 041916           64 -----DVMRVNPFNGVVSLGHSGG----------------------------------TVTMWKPTTAAPLIKMLCH---  101 (359)
Q Consensus        64 -----~~~~~sp~~~~l~sg~~dg----------------------------------~v~lwd~~~~~~~~~~~~h---  101 (359)
                           .+++|||||+.|++++.|+                                  .|.+||+.+++....+..+   
T Consensus       171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~  250 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (723)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence                 7899999999999887553                                  7999999988765666554   


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCceeeEec----cCCc----eeEEEcCCc--eEE--EEcCC-
Q 041916          102 ---QGPVSALAFHPNGHLMATSGK----ECKIKIWDLRKYEVLQTL----PGHA----KTLDFSQKG--LLA--VGTGS-  161 (359)
Q Consensus       102 ---~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~----~~~i----~~~~~s~~g--l~~--~~~d~-  161 (359)
                         ...+.+++|+|||++|++.+.    +..|.+||+.++++...+    .+.+    ..++|||+|  ++.  ...++ 
T Consensus       251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  330 (723)
T 1xfd_A          251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (723)
T ss_dssp             GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence               567899999999998877653    357999999998765544    2233    389999999  443  33556 


Q ss_pred             -----cEEEEcCCCCCC--ccceeecccCCCCcceEE-EEEeeCCCEEEEEcCC---CeEEEEEc
Q 041916          162 -----FVQILGDFSGSH--NYSRYMGHSMVKGYQIGK-VSFRPYEDVLGIGHSM---GWSSILVP  215 (359)
Q Consensus       162 -----~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d---g~~~i~~~  215 (359)
                           .|.+||+..+..  ....+.....    .+.. ++|+|+|+.|++.+.+   +...+|..
T Consensus       331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          331 RGKFYHITVSSSQPNSSNDNIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             SSCEEEEEEECSSCCSSSCCCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             CcceeEEEEEeccCCCCccceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence                 577787333323  1333332211    3544 6999999998766554   55566654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=1.8e-17  Score=147.11  Aligned_cols=172  Identities=10%  Similarity=0.014  Sum_probs=135.7

Q ss_pred             eEEEe-CCCcEEEEeccCC------CeEEEEEecCCCEEEEEe------------cCCeEEEEECCCCeEEEEEecCCCC
Q 041916            2 PYIYN-RDGTELHCLKEHG------AVLKLQFLRNHFLLASIN------------KFGQLRYQDVTMGEIVGNFRTGLGR   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~------~~~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~   62 (359)
                      |++|| .+++.+..+....      .+.+++|+|++.+|++++            .++.|.+||+.+++.+..+.. ...
T Consensus        58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~  136 (337)
T 1pby_B           58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ  136 (337)
T ss_dssp             EEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred             EEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence            78999 7888887776433      458899999999888886            579999999999988887775 356


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec------------------------------------------
Q 041916           63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC------------------------------------------  100 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~------------------------------------------  100 (359)
                      +.+++|+|++++|+++  ++.|.+||+.+++....+..                                          
T Consensus       137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            7889999999988877  67899999887655443321                                          


Q ss_pred             ------------------------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916          101 ------------------------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus       101 ------------------------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                                              +...+.+++|+|+|++++++  ++.|.+||+.+++.+..+  ...+.+++|+|+| 
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  292 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS  292 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSC
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCC
Confidence                                    11234569999999999888  689999999999887776  4568999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceee
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYM  179 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~  179 (359)
                       +++++.++.|.+||+.++ ..+..+.
T Consensus       293 ~l~~~~~~~~i~v~d~~~~-~~~~~~~  318 (337)
T 1pby_B          293 TVWLGGALGDLAAYDAETL-EKKGQVD  318 (337)
T ss_dssp             EEEEESBSSEEEEEETTTC-CEEEEEE
T ss_pred             EEEEEcCCCcEEEEECcCC-cEEEEEE
Confidence             666677899999998766 4444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.78  E-value=2.6e-17  Score=168.20  Aligned_cols=207  Identities=9%  Similarity=0.023  Sum_probs=158.1

Q ss_pred             eE-EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PY-IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~-iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |+ +|+..+.....+..|... .+++|+|||++|++++.++.|++||+.+++....+..|.+.+.+++|+|||++|++++
T Consensus       360 l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          360 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred             eEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence            45 778434444455566554 9999999999999999999999999999998888878989999999999999998887


Q ss_pred             CCC----------eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-------------
Q 041916           80 SGG----------TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-------------  136 (359)
Q Consensus        80 ~dg----------~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------  136 (359)
                      .++          .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+......             
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL  518 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred             cCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEe
Confidence            654          89999999876 667778888899999999999999999887777776433211             


Q ss_pred             ------------------------------eEec---cCCceeEEEcCCc-eEEE------------E--cCCcEEEEcC
Q 041916          137 ------------------------------LQTL---PGHAKTLDFSQKG-LLAV------------G--TGSFVQILGD  168 (359)
Q Consensus       137 ------------------------------~~~~---~~~i~~~~~s~~g-l~~~------------~--~d~~i~i~d~  168 (359)
                                                    +..+   .+.+..++++|+| +++.            +  ....|.+||+
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~  598 (1045)
T 1k32_A          519 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV  598 (1045)
T ss_dssp             STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred             CCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEEC
Confidence                                          1111   1346789999999 4442            1  2357888987


Q ss_pred             CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      .++.  ...+. .      .+.+++|+|||+.|++++.+ .+.+|....+.
T Consensus       599 ~~~~--~~~l~-~------~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          599 KTRK--VTEVK-N------NLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             TTCC--EEEEE-E------EEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             CCCc--EEEee-c------CcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            6652  23333 2      68899999999999999877 56677665544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=4.1e-17  Score=147.27  Aligned_cols=209  Identities=11%  Similarity=0.050  Sum_probs=141.7

Q ss_pred             eEEEe-C-CCcEEEEec--cCCCeEEEEEecCCCE--EEEEe-------------cCCeEEEEECC-CCeEEEEEe----
Q 041916            2 PYIYN-R-DGTELHCLK--EHGAVLKLQFLRNHFL--LASIN-------------KFGQLRYQDVT-MGEIVGNFR----   57 (359)
Q Consensus         2 v~iwd-~-~g~~~~~l~--~h~~~~~l~~s~~~~~--l~s~~-------------~dg~i~iwd~~-~~~~~~~~~----   57 (359)
                      |.+|+ . +|.......  .+..+.+++|+|+|++  +++++             .+|.+.+|++. +|+....+.    
T Consensus        62 v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~  141 (365)
T 1jof_A           62 WSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY  141 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred             EEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence            78899 4 777654333  2233567899999984  55553             68999999997 466554443    


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCcce--EEEe--ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 041916           58 TGLGRTDVMRVNPFNGVVSLGH-SGGTVTMWKPT-TAAPL--IKML--CHQGPVSALAFHPNGHLMATSGK-ECKIKIWD  130 (359)
Q Consensus        58 ~~~~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~-~~~~~--~~~~--~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd  130 (359)
                      .+...+.+++|+|+|++|++++ .++.|.+||+. +++..  ..+.  .|...+..++|+|||+++++++. ++.|.+|+
T Consensus       142 ~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence            2456799999999999888765 46799999998 66542  2333  23556899999999999988775 68999998


Q ss_pred             cC--Cceee------Eecc----C---------CceeEE-EcCCc--eEEEEcC-C-----cEEEEcCCCCCCccce---
Q 041916          131 LR--KYEVL------QTLP----G---------HAKTLD-FSQKG--LLAVGTG-S-----FVQILGDFSGSHNYSR---  177 (359)
Q Consensus       131 ~~--~~~~~------~~~~----~---------~i~~~~-~s~~g--l~~~~~d-~-----~i~i~d~~~~~~~~~~---  177 (359)
                      +.  +++..      ..++    +         .+..++ |+|+|  +++++.+ +     .|.+|++.........   
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~  301 (365)
T 1jof_A          222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL  301 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence            75  45432      2222    1         367899 99999  4444432 3     8999997532232221   


Q ss_pred             eecccCCCCcceEEEEEee---CCCEEEEEcCC-CeEEEEE
Q 041916          178 YMGHSMVKGYQIGKVSFRP---YEDVLGIGHSM-GWSSILV  214 (359)
Q Consensus       178 ~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d-g~~~i~~  214 (359)
                      ...+.    ..+..++|+|   +|++|++++.+ +.+.+|.
T Consensus       302 ~~~~~----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          302 SPTPT----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EECSS----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             eecCC----CCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            21222    2467789999   89988887654 5555543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=4.3e-17  Score=156.28  Aligned_cols=184  Identities=11%  Similarity=0.009  Sum_probs=140.3

Q ss_pred             CCcEEEEeccCCCeEEEEEecCCC--EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----
Q 041916            8 DGTELHCLKEHGAVLKLQFLRNHF--LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG----   81 (359)
Q Consensus         8 ~g~~~~~l~~h~~~~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d----   81 (359)
                      +|... .+..+......+|+|++.  .+++++.+ .+.+||+.+++.......+.   .+++|||||+.|++++.+    
T Consensus       100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A          100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred             CCccc-cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence            55544 555555556778999874  34444444 55599999987665554433   789999999999988877    


Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCceeeEecc---CCceeEE--------
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIWDLRKYEVLQTLP---GHAKTLD--------  148 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~i~~~~--------  148 (359)
                      +.|++||+.+++.. .+..|.+.+.+++|+|||++|+++..++  .|++||+.++++. .+.   ..+..++        
T Consensus       175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred             eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence            78999999888754 6778888999999999999999888888  8999999998776 442   3455566        


Q ss_pred             EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      |+|+|  +++++.++.+++|++  + ....   ..    ...+.+++|+ +++++++++.+..
T Consensus       253 ~spdg~~~~~~~~~g~~~l~~~--g-~~~~---~~----~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          253 YLPDGRLAVVARREGRSAVFID--G-ERVE---AP----QGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             ECTTSCEEEEEEETTEEEEEET--T-EEEC---CC----SSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EcCCCcEEEEEEcCCcEEEEEE--C-Ceec---cC----CCceEEEEec-CCEEEEEEcCCCC
Confidence            99999  566778999999997  3 3222   12    2378999999 9999988887765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=4.9e-16  Score=139.76  Aligned_cols=209  Identities=13%  Similarity=0.118  Sum_probs=134.2

Q ss_pred             eEEEe--CC-CcE--EEEeccCC-CeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEE----E--ec--------CC
Q 041916            2 PYIYN--RD-GTE--LHCLKEHG-AVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGN----F--RT--------GL   60 (359)
Q Consensus         2 v~iwd--~~-g~~--~~~l~~h~-~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~--~~--------~~   60 (359)
                      |.+|+  .. |..  +..+..+. .+..+++  ++.+|++++ .++.|.+|++.....+..    +  .+        +.
T Consensus        77 v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~  154 (361)
T 3scy_A           77 VSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM  154 (361)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred             EEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence            56676  22 543  33343333 3477777  787777666 588999999975432211    1  11        12


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc------e------EEE-eccCCCeEEEEEcCCCCEEEEEe-CCCe
Q 041916           61 GRTDVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAP------L------IKM-LCHQGPVSALAFHPNGHLMATSG-KECK  125 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~------~------~~~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~  125 (359)
                      ..+++++|+|+|++|++++ .++.|.+|++.....      +      ..+ ..+...+..++|+|+|+++++++ .++.
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            2358899999998665554 588999998875432      1      111 23345578999999999888877 6899


Q ss_pred             EEEEEcCCcee--eEec---c---CCceeEEEcCCc--eEEEEc--CCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916          126 IKIWDLRKYEV--LQTL---P---GHAKTLDFSQKG--LLAVGT--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS  193 (359)
Q Consensus       126 i~iwd~~~~~~--~~~~---~---~~i~~~~~s~~g--l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  193 (359)
                      |.+||+.++..  +..+   .   ..+..++|+|+|  +++++.  ++.|.+|++..............  .+..+.+++
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~  312 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFI  312 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CCCCCceEE
Confidence            99999987654  3333   1   235699999999  545554  47999999752211221111111  123678999


Q ss_pred             EeeCCCEEEEEc-CCCeEEEEE
Q 041916          194 FRPYEDVLGIGH-SMGWSSILV  214 (359)
Q Consensus       194 ~~p~~~~l~~~~-~dg~~~i~~  214 (359)
                      |+|+|++|++++ .++.+.+|.
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEE
Confidence            999999888776 455555553

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=4.6e-16  Score=139.94  Aligned_cols=210  Identities=13%  Similarity=0.185  Sum_probs=137.2

Q ss_pred             eEEEe---CCCcEE--EEeccCCCeEEEEEecCCCEEEEEecC----CeEEEEECCC--Ce--EEEEEecCCCCeEEEEE
Q 041916            2 PYIYN---RDGTEL--HCLKEHGAVLKLQFLRNHFLLASINKF----GQLRYQDVTM--GE--IVGNFRTGLGRTDVMRV   68 (359)
Q Consensus         2 v~iwd---~~g~~~--~~l~~h~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~   68 (359)
                      |++|.   .+|...  ..+ ....+..++|+|++++|++++.+    +.|.+|++..  |.  .+..+..+...+..+++
T Consensus        29 i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~  107 (361)
T 3scy_A           29 IYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT  107 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE
T ss_pred             EEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE
Confidence            45554   456543  333 23334889999999999998875    7999998865  44  33444445556777888


Q ss_pred             cCCCCEEEEEe-CCCeEEEEeCCCCcceEE---Eecc-----------CCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 041916           69 NPFNGVVSLGH-SGGTVTMWKPTTAAPLIK---MLCH-----------QGPVSALAFHPNGHLMATSG-KECKIKIWDLR  132 (359)
Q Consensus        69 sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~---~~~h-----------~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~  132 (359)
                        ++.+|++++ .++.|.+|++.....+..   ...+           ...+.+++|+|+|++|++++ .++.|.+|++.
T Consensus       108 --dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          108 --NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             --CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             --CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence              777766665 688999999975432211   1111           22358899999999776665 47899999987


Q ss_pred             Cce-------e-------eEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEE
Q 041916          133 KYE-------V-------LQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKV  192 (359)
Q Consensus       133 ~~~-------~-------~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~  192 (359)
                      ...       .       ....  ...+..++|+|+|  +++++ .++.|.+|++.++.. ....+..... ......++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~-~~~~~~~i  264 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV-NAQGSGDI  264 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS-CCCCEEEE
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC-CCCCcccE
Confidence            533       1       1122  2356899999999  55555 578999999764411 1122222211 22346899


Q ss_pred             EEeeCCCEEEEEcCC--CeEEEEEc
Q 041916          193 SFRPYEDVLGIGHSM--GWSSILVP  215 (359)
Q Consensus       193 ~~~p~~~~l~~~~~d--g~~~i~~~  215 (359)
                      +|+|+|++|+++..+  +.+.+|..
T Consensus       265 ~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          265 HLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             EECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             EECCCCCEEEEECCCCCCEEEEEEE
Confidence            999999988665554  55666554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=8.6e-17  Score=143.46  Aligned_cols=148  Identities=13%  Similarity=0.107  Sum_probs=117.3

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEEe
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVV-SLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l-~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      +++++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.+ +++..++.|.+||+.+++.+..+.
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            456788889999999999999999999999888887553 257899999999865 455678999999999988777665


Q ss_pred             ccC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCcee---eEec--cCCceeEEEcCCc-eE
Q 041916          100 CHQ------GPVSALAFHPNGHLMATSGKE------------CKIKIWDLRKYEV---LQTL--PGHAKTLDFSQKG-LL  155 (359)
Q Consensus       100 ~h~------~~v~~i~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~--~~~i~~~~~s~~g-l~  155 (359)
                      .+.      ..+.+++|+|+|++|++++.+            +.|.+||+.+++.   +..+  +..+.+++|+|+| ++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~  162 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  162 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence            332      237889999999999998865            8999999988543   2333  4468899999999 66


Q ss_pred             EEEcCCcEEEEcCCCC
Q 041916          156 AVGTGSFVQILGDFSG  171 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~  171 (359)
                      ++  ++.|.+||+.++
T Consensus       163 ~~--~~~i~~~d~~~~  176 (349)
T 1jmx_B          163 VA--GPDIYKMDVKTG  176 (349)
T ss_dssp             EE--SSSEEEECTTTC
T ss_pred             Ec--cCcEEEEeCCCC
Confidence            64  445999997665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.76  E-value=1.9e-16  Score=143.59  Aligned_cols=198  Identities=12%  Similarity=0.008  Sum_probs=146.3

Q ss_pred             Ee-CCCcEEEEeccCCCe-EE-----EEEecCCCEEEEEec-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916            5 YN-RDGTELHCLKEHGAV-LK-----LQFLRNHFLLASINK-FG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         5 wd-~~g~~~~~l~~h~~~-~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      +| .+|..+..+..|... ..     .+|+|||++|++++. ++  .|.+||+.+++.......+...+..++|+|+|+.
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            34 788899999988764 55     889999999988887 66  4899999999877766666666667889999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE--EcCCCCEEEEE----------------------eCCCeEEEEE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA--FHPNGHLMATS----------------------GKECKIKIWD  130 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~--~~~~~~~l~~~----------------------~~d~~i~iwd  130 (359)
                      |+.++.++.|.+||+.+++....+..+.+.+....  ++|++.+++..                      +.+..|.+||
T Consensus        95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A           95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            99999999999999999887666666665554444  48999998743                      2446899999


Q ss_pred             cCCceeeEec--cCCceeEEEcC-Cc--eEEEEcC------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          131 LRKYEVLQTL--PGHAKTLDFSQ-KG--LLAVGTG------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       131 ~~~~~~~~~~--~~~i~~~~~s~-~g--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      +.+++.....  ...+..++|+| +|  ++.++.+      ..|.++|...+  ....+..+.  .+..+..++|+|+|+
T Consensus       175 ~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          175 LKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHA--EGESCTHEFWVPDGS  250 (388)
T ss_dssp             TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCC--TTEEEEEEEECTTSS
T ss_pred             CCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCC--CCcccccceECCCCC
Confidence            9988654443  45688999999 98  4444432      37888885443  233333331  122578899999999


Q ss_pred             EEEEEcC
Q 041916          200 VLGIGHS  206 (359)
Q Consensus       200 ~l~~~~~  206 (359)
                      .|+..+.
T Consensus       251 ~l~~~~~  257 (388)
T 3pe7_A          251 ALVYVSY  257 (388)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEec
Confidence            7765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.4e-16  Score=157.13  Aligned_cols=208  Identities=11%  Similarity=0.045  Sum_probs=145.1

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe------EEEEEecCCCEEEEEecC---------CeEEEEECCCCeEEEEEecCCCCeE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV------LKLQFLRNHFLLASINKF---------GQLRYQDVTMGEIVGNFRTGLGRTD   64 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~------~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~   64 (359)
                      +|++|| .+|.+...+.+|...      ..++|||||++|++++.+         +.+.+||+.+++.. .+..|.+.+.
T Consensus        37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~  115 (740)
T 4a5s_A           37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQ  115 (740)
T ss_dssp             EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEE
T ss_pred             cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcce
Confidence            378999 889888888887631      348999999999998875         66779999998854 4666778899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-EeccCCCe-----------------EEEEEcCCCCEEEEEeCCC--
Q 041916           65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK-MLCHQGPV-----------------SALAFHPNGHLMATSGKEC--  124 (359)
Q Consensus        65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~-~~~h~~~v-----------------~~i~~~~~~~~l~~~~~d~--  124 (359)
                      .++|||||+.||.++ |+.|++||+.++..... ..++...+                 .++.|||||++||.++.|.  
T Consensus       116 ~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~  194 (740)
T 4a5s_A          116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE  194 (740)
T ss_dssp             EEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred             eeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC
Confidence            999999999998884 68999999988765432 12332222                 3589999999999875321  


Q ss_pred             ----------------------------------eEEEEEcCC---c---eeeEec--------cCCceeEEEcCCc-eE
Q 041916          125 ----------------------------------KIKIWDLRK---Y---EVLQTL--------PGHAKTLDFSQKG-LL  155 (359)
Q Consensus       125 ----------------------------------~i~iwd~~~---~---~~~~~~--------~~~i~~~~~s~~g-l~  155 (359)
                                                        +|.+||+.+   +   +.....        ...+..++||||| ++
T Consensus       195 v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~  274 (740)
T 4a5s_A          195 VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS  274 (740)
T ss_dssp             CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE
T ss_pred             CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEE
Confidence                                              588899988   7   332221        1247899999999 33


Q ss_pred             E-EEc----CCcEEEEcCCCCC----C-cccee--ecccCCCCcce-----EEEEEeeCCCEEE-EEc-CCCeEEEEE
Q 041916          156 A-VGT----GSFVQILGDFSGS----H-NYSRY--MGHSMVKGYQI-----GKVSFRPYEDVLG-IGH-SMGWSSILV  214 (359)
Q Consensus       156 ~-~~~----d~~i~i~d~~~~~----~-~~~~~--~~~~~~~~~~v-----~~~~~~p~~~~l~-~~~-~dg~~~i~~  214 (359)
                      + ...    +..|.+||+.++.    . ....+  ..+..    .|     ..++|+|||+.|+ ..+ .+|...|+.
T Consensus       275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~  348 (740)
T 4a5s_A          275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY  348 (740)
T ss_dssp             EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE
Confidence            3 322    2379999987763    1 12222  22321    33     3788999999876 554 566555543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=163.31  Aligned_cols=175  Identities=13%  Similarity=0.080  Sum_probs=130.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEeC---------CCeEEEEeC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG---RTDVMRVNPFNGVVSLGHS---------GGTVTMWKP   89 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~   89 (359)
                      .+++|+|+|.++++ +.|+.|++||+.+++....+..+..   .+.+++|||||++|++++.         ++.|.+||+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            67899999976555 4699999999999998777765543   4899999999999998876         789999999


Q ss_pred             CCCcce--EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC--------------------Ccee
Q 041916           90 TTAAPL--IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG--------------------HAKT  146 (359)
Q Consensus        90 ~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~--------------------~i~~  146 (359)
                      .+++.+  ..+   ...+.+++|||||+.|++++ ++.|++||+.++.+.... .+                    ...+
T Consensus        98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            988652  222   35688999999999999986 789999999887765433 11                    1148


Q ss_pred             EEEcCCc--eEEEEcCC----------------------------------cEEEEcCCCCCCc--cc-----eeecccC
Q 041916          147 LDFSQKG--LLAVGTGS----------------------------------FVQILGDFSGSHN--YS-----RYMGHSM  183 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~----------------------------------~i~i~d~~~~~~~--~~-----~~~~~~~  183 (359)
                      ++|||||  +++++.|.                                  .|.+||+.++...  ..     .+..|. 
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-  252 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD-  252 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc-
Confidence            9999999  55555431                                  7889997655211  01     122333 


Q ss_pred             CCCcceEEEEEeeCCCEEEEEc
Q 041916          184 VKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       184 ~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                         ..+.+++|+||++++++..
T Consensus       253 ---~~~~~~~~SpD~~~~~~~~  271 (719)
T 1z68_A          253 ---YYFSWLTWVTDERVCLQWL  271 (719)
T ss_dssp             ---EEEEEEEESSSSEEEEEEE
T ss_pred             ---ceEEEeEEeCCCeEEEEEe
Confidence               3789999999988777643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=1.2e-16  Score=153.30  Aligned_cols=180  Identities=13%  Similarity=0.007  Sum_probs=127.9

Q ss_pred             eEEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC--Cc
Q 041916           21 VLKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTT--AA   93 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~--~~   93 (359)
                      +.+++|+|||+.||+++. ||++.||++.+++.. .+..+. ..+..++|+|| +++++++.   +....+|.+..  ..
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g  101 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG  101 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence            499999999999999887 999999999766654 454454 68999999999 77777765   45556655433  22


Q ss_pred             ceEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC----CcEEEE
Q 041916           94 PLIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG----SFVQIL  166 (359)
Q Consensus        94 ~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d----~~i~i~  166 (359)
                      ....+..+. .+...+|+|+|+. +++++.++.+.+||+.++++......+..+++|||||  +++++.+    +.|++|
T Consensus       102 ~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          102 EEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             CCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             ccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence            222333322 3456788888864 3333444455699999987655553334899999999  5545555    679999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      |+.++ . ...+..|..    .+.+++|+|||+.|+++..+|.
T Consensus       181 d~~~g-~-~~~l~~~~~----~~~~~~~SpDG~~l~~~~~~~~  217 (582)
T 3o4h_A          181 NLSSG-G-LRVFDSGEG----SFSSASISPGMKVTAGLETARE  217 (582)
T ss_dssp             ETTTC-C-CEEECCSSC----EEEEEEECTTSCEEEEEECSSC
T ss_pred             cCCCC-C-ceEeecCCC----ccccceECCCCCEEEEccCCCe
Confidence            97666 2 335555544    7899999999999998888883

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=9.6e-16  Score=138.30  Aligned_cols=185  Identities=10%  Similarity=-0.011  Sum_probs=128.5

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEec-CCCCeEEEEEcCCCCE--EEEEe-------------CCC
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRT-GLGRTDVMRVNPFNGV--VSLGH-------------SGG   82 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~--l~sg~-------------~dg   82 (359)
                      .+..++|+|++++|++++.+ .|.+||+. +|+....... ..+.+.+++|+|+|+.  +++++             .+|
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            45899999999999998888 99999997 7876543321 1133567899999984  44553             689


Q ss_pred             eEEEEeCC-CCcceEEEe----ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcC-Cceee--Eec-----cCCceeEE
Q 041916           83 TVTMWKPT-TAAPLIKML----CHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLR-KYEVL--QTL-----PGHAKTLD  148 (359)
Q Consensus        83 ~v~lwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~--~~~-----~~~i~~~~  148 (359)
                      .+.+|++. .+.....+.    .+...+.+++|+|||++|++++. ++.|.+||+. +++..  ..+     ...+..++
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999997 455443333    24567899999999999887764 6799999998 66542  233     13478999


Q ss_pred             EcCCc--eEEEEc-CCcEEEEcCC--CCCCcc---ceeecccCC-C--Cc------ceEEEE-EeeCCCEEEEEcC
Q 041916          149 FSQKG--LLAVGT-GSFVQILGDF--SGSHNY---SRYMGHSMV-K--GY------QIGKVS-FRPYEDVLGIGHS  206 (359)
Q Consensus       149 ~s~~g--l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~~~~-~--~~------~v~~~~-~~p~~~~l~~~~~  206 (359)
                      |+|+|  +++++. ++.|.+|++.  ++ ...   ..+...... .  ..      .+..++ |+|+|++|+++..
T Consensus       200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          200 MHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            99999  555554 6899999754  33 221   111111100 0  11      478999 9999998877654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.4e-15  Score=135.15  Aligned_cols=209  Identities=10%  Similarity=0.012  Sum_probs=151.0

Q ss_pred             eEEEe-CCCcEEEEecc-C-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEE---------ecCCCCeEEEEE
Q 041916            2 PYIYN-RDGTELHCLKE-H-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNF---------RTGLGRTDVMRV   68 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~-h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~   68 (359)
                      |++|| .+|..+..+.. + ..+..++++|+|+++++...++.|++||..... .+..+         ..+...+..+++
T Consensus        71 i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~  150 (329)
T 3fvz_A           71 ILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV  150 (329)
T ss_dssp             EEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE
T ss_pred             EEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE
Confidence            78999 67888776653 3 245999999999988888889999999986432 45555         234456899999


Q ss_pred             cC-CCCEEEEEe-CCCeEEEEeCCCCcceEEEecc----------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCce
Q 041916           69 NP-FNGVVSLGH-SGGTVTMWKPTTAAPLIKMLCH----------QGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        69 sp-~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~~h----------~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~  135 (359)
                      +| ++.++++.+ .++.|.+|| .++..+..+...          -.....|+++|+ +.++++...++.|++||..+++
T Consensus       151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~  229 (329)
T 3fvz_A          151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE  229 (329)
T ss_dssp             CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred             eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence            99 788888886 699999999 456666665422          233789999998 7777777788999999999888


Q ss_pred             eeEecc-----CCceeEEEcCCc-eEEEE--------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          136 VLQTLP-----GHAKTLDFSQKG-LLAVG--------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       136 ~~~~~~-----~~i~~~~~s~~g-l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      .+..+.     ..+.+++++| + ++...        .+..|.+||..++ ..+..+..... ....+.+++++|+|.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~-~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          230 FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRK-HFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSS-CCSSEEEEEECTTSEEE
T ss_pred             EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCC-ccCCeeEEEECCCCCEE
Confidence            887772     3578899999 6 33322        2348999997766 44444421111 23368999999999666


Q ss_pred             EEEcCCCeEEEEE
Q 041916          202 GIGHSMGWSSILV  214 (359)
Q Consensus       202 ~~~~~dg~~~i~~  214 (359)
                      ++...++.+.+|.
T Consensus       307 vad~~~~~I~~~~  319 (329)
T 3fvz_A          307 IGDAHTNTVWKFT  319 (329)
T ss_dssp             EEESSSCCEEEEE
T ss_pred             EEECCCCEEEEEe
Confidence            6655555555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.9e-14  Score=124.97  Aligned_cols=204  Identities=12%  Similarity=0.124  Sum_probs=146.6

Q ss_pred             eEEEeCCCcEEEEecc------CC-CeEEEEEe-cCCCEEEEEec-CCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCC
Q 041916            2 PYIYNRDGTELHCLKE------HG-AVLKLQFL-RNHFLLASINK-FGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPF   71 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~------h~-~~~~l~~s-~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~   71 (359)
                      |++||.+|..+..+..      +. .+.+++++ +++.++++... ++.|.+|| .+++.+..+.. +...+.+++++|+
T Consensus        53 i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~  131 (286)
T 1q7f_A           53 IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK  131 (286)
T ss_dssp             EEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT
T ss_pred             EEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC
Confidence            6789966887777643      22 35899995 67777666643 78999999 56777777653 3457899999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--c---CCc
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--P---GHA  144 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~---~~i  144 (359)
                      |.++++...++.|.+||.. +..+..+.  .+...+.+|+++|+|+++++.+.++.|.+||.. +..+..+  .   ..+
T Consensus       132 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p  209 (286)
T 1q7f_A          132 GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYP  209 (286)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSE
T ss_pred             CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCC
Confidence            9988888888999999964 55555554  344568999999999988877788999999974 4555555  2   357


Q ss_pred             eeEEEcCCc-eEEEE-cCC-cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          145 KTLDFSQKG-LLAVG-TGS-FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~-~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ..++++|+| +++++ .++ .|.+||. .+ ..+..+..+.  ....+.+++++|+|.++++ +.++.+.+|
T Consensus       210 ~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g-~~~~~~~~~~--~~~~~~~i~~~~~g~l~vs-~~~~~v~v~  276 (286)
T 1q7f_A          210 IGVGINSNGEILIADNHNNFNLTIFTQ-DG-QLISALESKV--KHAQCFDVALMDDGSVVLA-SKDYRLYIY  276 (286)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECT-TS-CEEEEEEESS--CCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred             cEEEECCCCCEEEEeCCCCEEEEEECC-CC-CEEEEEcccC--CCCcceeEEECCCCcEEEE-CCCCeEEEE
Confidence            899999999 65555 454 9999994 33 4445554442  2224789999999965554 345544444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=4.9e-16  Score=153.19  Aligned_cols=180  Identities=11%  Similarity=0.051  Sum_probs=130.9

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-----eEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-----TDVMRVNPFNGVVSLGHSG---------GTVTMW   87 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~sg~~d---------g~v~lw   87 (359)
                      .++.|+||+.+|+++  |+.|++||+.++++...+.+|...     ...++|||||++|++++.+         +.+.+|
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            789999999999886  899999999999988778777543     2348899999999998876         567799


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC--------------------Ccee
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG--------------------HAKT  146 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~--------------------~i~~  146 (359)
                      |+.+++.. .+..|.+.+..++|||||+.||.+. |+.|++||+.++...+.. .+                    ....
T Consensus        98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence            99988754 3567788899999999999999885 689999999887754422 11                    1135


Q ss_pred             EEEcCCc--eEEEEcC-C-----------------------------------cEEEEcCCC---CCC-ccceeeccc--
Q 041916          147 LDFSQKG--LLAVGTG-S-----------------------------------FVQILGDFS---GSH-NYSRYMGHS--  182 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d-~-----------------------------------~i~i~d~~~---~~~-~~~~~~~~~--  182 (359)
                      +.|||||  ++.++.| +                                   .|.+||+.+   +.. ....+....  
T Consensus       176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            8999999  4444322 1                                   477888766   421 111221100  


Q ss_pred             CCCCcceEEEEEeeCCCEEEEEc
Q 041916          183 MVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       183 ~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      ..+...+..++|+|||+.++...
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEe
Confidence            00233789999999999766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.70  E-value=7.3e-15  Score=127.16  Aligned_cols=199  Identities=11%  Similarity=0.016  Sum_probs=155.7

Q ss_pred             CeEEEe-CCCcEEEEeccCC--CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHG--AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~--~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~   76 (359)
                      .|++|| .+|+.+..+..+.  .+.++.++|+|++|++  .++.|..||. +|+.+..+..+. ..+.++.+.|+|++++
T Consensus        16 ~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv   92 (276)
T 3no2_A           16 KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALV   92 (276)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEE
T ss_pred             EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEE
Confidence            378999 5999999999876  4599999999998883  4678999999 899999998753 4788999999999999


Q ss_pred             EEeC-CCeEEEEeCCCCcceEEEec------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeE
Q 041916           77 LGHS-GGTVTMWKPTTAAPLIKMLC------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTL  147 (359)
Q Consensus        77 sg~~-dg~v~lwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~  147 (359)
                      +.+. ++.|..+|. +++.+..+..      +......+++.++|+++++.+.++.|..||.. ++.+..+  ...+.++
T Consensus        93 ~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~  170 (276)
T 3no2_A           93 AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSS  170 (276)
T ss_dssp             EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEE
T ss_pred             EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccce
Confidence            9887 888888886 6777666542      22245567889999999999999999999998 9988888  3467788


Q ss_pred             EEcCCc-eEE-EEcCCcEEEEcCCCCCCccceeecccC--CCCcceEEEEEeeCCCEEEEEc
Q 041916          148 DFSQKG-LLA-VGTGSFVQILGDFSGSHNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       148 ~~s~~g-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      .+.++| +++ ++.++.|..+|..++ +.+..+.....  .....+..++..++|.++++..
T Consensus       171 ~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          171 AFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            889998 544 445568999997766 55555543321  0122478889999999888864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=5.5e-15  Score=133.09  Aligned_cols=204  Identities=9%  Similarity=0.053  Sum_probs=137.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC------CCCe
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG------LGRT   63 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v   63 (359)
                      +|++|| .+++.+..+..+..+ .++|+||+++|++++          .++.|.+||+.+++.+..+...      ....
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p  110 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYD  110 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCG
T ss_pred             eEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCc
Confidence            378999 889999888887777 999999999998886          3678999999999988888643      2456


Q ss_pred             EEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCC---------------------------
Q 041916           64 DVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPN---------------------------  113 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~---------------------------  113 (359)
                      ..++++|+|++|+++..  +++|.+||+.+++.+.. +.. .+ ...+.+.|+                           
T Consensus       111 ~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~  188 (361)
T 2oiz_A          111 GLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS  188 (361)
T ss_dssp             GGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred             ceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence            78999999999998864  68999999998877666 331 11 111222222                           


Q ss_pred             ----------------------CCEEEEEeCCCeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--e
Q 041916          114 ----------------------GHLMATSGKECKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--L  154 (359)
Q Consensus       114 ----------------------~~~l~~~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l  154 (359)
                                            +..++..+.++.|.++|+....  .+..+             +.....++|+|++  +
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l  268 (361)
T 2oiz_A          189 QSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM  268 (361)
T ss_dssp             EEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred             eccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence                                  2222333334455555554322  11111             0112237899997  4


Q ss_pred             EEEEc-----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          155 LAVGT-----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       155 ~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +++..           .+.|.+||+.+. +.+..+..+     . +.+++|+|+|++|++++. +.+.+|..
T Consensus       269 yv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~-----~-p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          269 YVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGR-----D-ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             EEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECT-----T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             EEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecC-----C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            44432           348999998776 455555443     2 899999999998877664 55555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.3e-15  Score=148.06  Aligned_cols=205  Identities=10%  Similarity=0.003  Sum_probs=139.6

Q ss_pred             eEEEeCC--C-cEEEEecc-----CCCe-EEEEEecCCCEEEEEecC----------CeEEEEECCC------CeEEEEE
Q 041916            2 PYIYNRD--G-TELHCLKE-----HGAV-LKLQFLRNHFLLASINKF----------GQLRYQDVTM------GEIVGNF   56 (359)
Q Consensus         2 v~iwd~~--g-~~~~~l~~-----h~~~-~~l~~s~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~   56 (359)
                      |++|+..  | .....+..     |... .+++|+|||+.|++++.+          ..|++||+.+      +.. ..+
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l  182 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL  182 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE
Confidence            5666644  3 44556666     4554 899999999999988876          5899999987      554 455


Q ss_pred             e-cCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 041916           57 R-TGLGRTDVMRVNPFNGVVSLGHSG--------GTVTMWKPT-TA---APLIKMLCHQGPVSALAFHPNGHLMATSGKE  123 (359)
Q Consensus        57 ~-~~~~~v~~~~~sp~~~~l~sg~~d--------g~v~lwd~~-~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d  123 (359)
                      . .+...+..++|||||+.|+.++.+        ..|.+||+. ++   ........|...+.+++|+|||+++++++.+
T Consensus       183 ~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~  262 (662)
T 3azo_A          183 SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT  262 (662)
T ss_dssp             SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred             EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence            5 556778889999999999887755        379999998 56   3333344567889999999999988888888


Q ss_pred             C--eEEEEEcCCceeeEeccC--C---------ceeEEEcCCc--eEEEEcCCcEEEE--cCCCCCCccceeecccCCCC
Q 041916          124 C--KIKIWDLRKYEVLQTLPG--H---------AKTLDFSQKG--LLAVGTGSFVQIL--GDFSGSHNYSRYMGHSMVKG  186 (359)
Q Consensus       124 ~--~i~iwd~~~~~~~~~~~~--~---------i~~~~~s~~g--l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~  186 (359)
                      +  .|.+||+.+++.......  .         +.+++|+|++  +++++. +.+.||  |+..+  ....+..+..   
T Consensus       263 ~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~~~~---  336 (662)
T 3azo_A          263 GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAGPWT---  336 (662)
T ss_dssp             SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCSSCC---
T ss_pred             CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecCCCC---
Confidence            8  677777766665433321  1         4678999988  444555 888888  54333  3444544432   


Q ss_pred             cceEEEEEeeCCCE--EEEEcCCCeEEEEEc
Q 041916          187 YQIGKVSFRPYEDV--LGIGHSMGWSSILVP  215 (359)
Q Consensus       187 ~~v~~~~~~p~~~~--l~~~~~dg~~~i~~~  215 (359)
                       .+..+ |++++..  +++++.+....+|..
T Consensus       337 -~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          337 -EWAAT-LTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             -EEEEE-EEEETTEEEEEEEETTEEEEEEEE
T ss_pred             -eEEEE-EecCCCEEEEEEcCCCCCCEEEEE
Confidence             56665 1455543  334444544455543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=2e-14  Score=125.60  Aligned_cols=197  Identities=19%  Similarity=0.202  Sum_probs=141.7

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~   76 (359)
                      |++||..+. ...+..+... .+++|+|+|.++++...++.|.+||..+++........    ...+..++++|+|.+++
T Consensus        52 i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v  130 (296)
T 3e5z_A           52 TWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWF  130 (296)
T ss_dssp             EEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEE
T ss_pred             EEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEE
Confidence            678884444 5666666554 99999999998887777789999999888765433221    23467899999999888


Q ss_pred             EE----e-------------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Ccee--
Q 041916           77 LG----H-------------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEV--  136 (359)
Q Consensus        77 sg----~-------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~--  136 (359)
                      +.    +             ..+.|..++.. +. +..+..+......++|+|+|+.+++.+.++.|.+||+. ++..  
T Consensus       131 td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~  208 (296)
T 3e5z_A          131 SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY  208 (296)
T ss_dssp             EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE
T ss_pred             ECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC
Confidence            73    2             13466667665 43 44455566678999999999999777778999999997 4443  


Q ss_pred             -eEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE-eeCCCEEEEEcCCCe
Q 041916          137 -LQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF-RPYEDVLGIGHSMGW  209 (359)
Q Consensus       137 -~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~dg~  209 (359)
                       ...+   .+.+.+++++++| +++++ ++.|.+||.. + .....+..+    .. +++++| .|+++.|.+++.++.
T Consensus       209 ~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g-~~~~~~~~~----~~-~~~~~f~~~d~~~L~v~t~~~l  279 (296)
T 3e5z_A          209 QGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G-DELGRVLTP----QT-TSNLCFGGPEGRTLYMTVSTEF  279 (296)
T ss_dssp             EEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S-CEEEEEECS----SC-CCEEEEESTTSCEEEEEETTEE
T ss_pred             CCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C-CEEEEEECC----CC-ceeEEEECCCCCEEEEEcCCeE
Confidence             2222   3456889999999 66666 8899999964 3 444445443    22 888999 588888888777653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=8.1e-15  Score=130.86  Aligned_cols=191  Identities=9%  Similarity=0.032  Sum_probs=130.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC---C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF---G--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |++|| .+|.. ..+   ..+..++|||||++|+.++.+   +  .|.+||+.+++.......+ . +..++|+|+|+.|
T Consensus        45 l~~~d~~~~~~-~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l  118 (347)
T 2gop_A           45 IVIENLKNNAR-RFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKL  118 (347)
T ss_dssp             EEEEETTTCCE-EEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEE
T ss_pred             EEEEeCCCCce-EEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEE
Confidence            67888 55544 344   345889999999999887654   2  4888899888766555444 3 9999999999988


Q ss_pred             EEEeCC---------------------------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC----
Q 041916           76 SLGHSG---------------------------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC----  124 (359)
Q Consensus        76 ~sg~~d---------------------------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~----  124 (359)
                      +.++.+                           ..|.+||+.+++.+..+.. . .+..++|+||| ++++++.+.    
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          119 LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccccccc
Confidence            887642                           5699999988876455554 3 78899999999 777776542    


Q ss_pred             -----eEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC--------CcEEEEcCCCCCCccceeecccCCCCcce
Q 041916          125 -----KIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG--------SFVQILGDFSGSHNYSRYMGHSMVKGYQI  189 (359)
Q Consensus       125 -----~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  189 (359)
                           .|.++|  +++....... .....++|+|  ++.++.+        ..|.+||  ++ ........+.    ..+
T Consensus       196 ~~~~~~l~~~d--~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~----~~~  265 (347)
T 2gop_A          196 YFKFWDIYIWE--DGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVD----RGV  265 (347)
T ss_dssp             SSCCEEEEEEE--TTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCC----SEE
T ss_pred             ccccccEEEeC--CCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCC----ccc
Confidence                 355555  5543322222 3333449999  5555533        4688888  33 3333333332    367


Q ss_pred             EE-EEEeeCCCEEEEEcCCCeEEEE
Q 041916          190 GK-VSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       190 ~~-~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      .. +.|+ ++ ++++++.++...+|
T Consensus       266 ~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          266 GQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             EEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             CCccEEc-Cc-EEEEEecCCcEEEE
Confidence            76 8999 88 88888889888887

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=8.7e-15  Score=132.65  Aligned_cols=202  Identities=8%  Similarity=-0.050  Sum_probs=135.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE--EcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR--VNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~s   77 (359)
                      |++|| .+|.......++... ..++|+|||..|++++.++.|++||+.+++....+..+...+....  ++|++.+++.
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence            67888 566655555555555 5789999999999999999999999999987777776666554444  4899998874


Q ss_pred             E----------------------eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEE
Q 041916           78 G----------------------HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKE------CKIKI  128 (359)
Q Consensus        78 g----------------------~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d------~~i~i  128 (359)
                      .                      ..++.|.+||+.+++. ..+..+...+..++|+| ||+.|+.++.+      ..|.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (388)
T 3pe7_A          142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL  220 (388)
T ss_dssp             EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred             ccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence            3                      2446799999998864 44456677899999999 99999887753      37888


Q ss_pred             EEcCCceeeEecc----CCceeEEEcCCc--eEEEEc-C-C---cEEEEcCCCCCCc-cceeecccCCCCcceEEEEEee
Q 041916          129 WDLRKYEVLQTLP----GHAKTLDFSQKG--LLAVGT-G-S---FVQILGDFSGSHN-YSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       129 wd~~~~~~~~~~~----~~i~~~~~s~~g--l~~~~~-d-~---~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      +|+..+.......    ..+..++|||+|  ++.++. + +   .|++||+.++... +..+..+.. .......++|+|
T Consensus       221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~-~~~~~~~~~~sp  299 (388)
T 3pe7_A          221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH-LMSNYDGSLMVG  299 (388)
T ss_dssp             EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE-EEECTTSSEEEE
T ss_pred             EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee-eeecCCCCeEcc
Confidence            8887654433222    146788999999  444332 2 2   3999998776321 111111100 000122237999


Q ss_pred             CCCEEEEEc
Q 041916          197 YEDVLGIGH  205 (359)
Q Consensus       197 ~~~~l~~~~  205 (359)
                      +|+.|++..
T Consensus       300 dg~~l~~~~  308 (388)
T 3pe7_A          300 DGSDAPVDV  308 (388)
T ss_dssp             EECCC----
T ss_pred             CCCcceeEe
Confidence            999887654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=6.1e-14  Score=124.57  Aligned_cols=207  Identities=9%  Similarity=-0.010  Sum_probs=146.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-----GRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l   75 (359)
                      |.+|| .+++.+.++.....+..+++++++.++++...++.|.+||+.+++....+....     .....+++ .++.++
T Consensus        66 v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly  144 (328)
T 3dsm_A           66 IFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY  144 (328)
T ss_dssp             EEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred             EEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence            78899 889999999776677999999998555554478999999999999887777543     14567777 444444


Q ss_pred             EEEe-CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCceeeEecc---
Q 041916           76 SLGH-SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE----------CKIKIWDLRKYEVLQTLP---  141 (359)
Q Consensus        76 ~sg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~---  141 (359)
                      ++.. .++.|.+||+.+++.+..+.... ....++++|+|++++++..+          +.|.+||..+++....+.   
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~  223 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL  223 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence            4443 48899999999998877776433 34689999999977776654          789999999988776662   


Q ss_pred             -CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEE----cCCCeEEEEE
Q 041916          142 -GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIG----HSMGWSSILV  214 (359)
Q Consensus       142 -~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~----~~dg~~~i~~  214 (359)
                       ..+..++|+|++ .+-++.. .|.+||..++......+...   .+.....++++|+ +.++++.    ..++.+.+|.
T Consensus       224 g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          224 GDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             TCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             CCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence             258999999988 3333333 99999976653211122111   1236889999995 5444444    3444444444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=5.9e-15  Score=143.52  Aligned_cols=207  Identities=9%  Similarity=-0.075  Sum_probs=141.5

Q ss_pred             EEEe-CCCcEEEEeccCCCe-E---------EEEEe--cCCCE-EEEEec-CCeEEEEECC--C-CeEEEEEec-----C
Q 041916            3 YIYN-RDGTELHCLKEHGAV-L---------KLQFL--RNHFL-LASINK-FGQLRYQDVT--M-GEIVGNFRT-----G   59 (359)
Q Consensus         3 ~iwd-~~g~~~~~l~~h~~~-~---------~l~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~   59 (359)
                      .||. ..+.....+..|... .         ...|+  |||+. |+.++. +..|.++++.  . +. ...+..     |
T Consensus        50 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~  128 (662)
T 3azo_A           50 TLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGG  128 (662)
T ss_dssp             EEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTT
T ss_pred             EEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCC
Confidence            4666 445555666666533 4         56666  99988 776654 5667777765  2 43 445555     5


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCC------CcceEEEe-ccCCCeEEEEEcCCCCEEEEEeC
Q 041916           60 LGRTDVMRVNPFNGVVSLGHSG----------GTVTMWKPTT------AAPLIKML-CHQGPVSALAFHPNGHLMATSGK  122 (359)
Q Consensus        60 ~~~v~~~~~sp~~~~l~sg~~d----------g~v~lwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~  122 (359)
                      ...+.+++|+|||+.|++++.+          ..|.+||+.+      +. ...+. .+...+.+++|+|||++|+.++.
T Consensus       129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            6678999999999999988876          5899999987      44 44555 56677888999999999998875


Q ss_pred             C--------CeEEEEEcC-Cc---eeeEec---cCCceeEEEcCCc-eEE-EEcCC--cEEEEcCCCCCCccceeecccC
Q 041916          123 E--------CKIKIWDLR-KY---EVLQTL---PGHAKTLDFSQKG-LLA-VGTGS--FVQILGDFSGSHNYSRYMGHSM  183 (359)
Q Consensus       123 d--------~~i~iwd~~-~~---~~~~~~---~~~i~~~~~s~~g-l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~  183 (359)
                      +        ..|.+||+. ++   ......   ...+..++|+|+| ++. +..++  .|.+||+.++ ........+..
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~  286 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREEE  286 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSB
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeeccccccc
Confidence            5        379999998 56   333322   3568899999999 444 44566  6777775444 22222222211


Q ss_pred             CCC-----cceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          184 VKG-----YQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       184 ~~~-----~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       ..     ..+.+++|+|++.++++++. +...+|.
T Consensus       287 -~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          287 -FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             -SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             -ccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence             00     01567899999999988887 7766664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=1.6e-13  Score=121.71  Aligned_cols=207  Identities=9%  Similarity=-0.015  Sum_probs=143.8

Q ss_pred             CcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----Ce
Q 041916            9 GTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG----GT   83 (359)
Q Consensus         9 g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d----g~   83 (359)
                      +.....+..+.. +.+++|+|++.+++++..++.|.+||..+++.......+...+.+++|+|+|.+++++..+    +.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence            445556665554 4999999999988888889999999999887665554566789999999999988887766    68


Q ss_pred             EEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc
Q 041916           84 VTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG  153 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g  153 (359)
                      |.+||+.++.....+.  .+...+.+++++|+|+++++...      .+.|..||..+++.....  ...+..++|+|+|
T Consensus       114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999998776543332  23456899999999988777654      356777776655433222  2357899999998


Q ss_pred             --eEEEE-cCCcEEEEcCCCCCCccceee---cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          154 --LLAVG-TGSFVQILGDFSGSHNYSRYM---GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                        ++++. .++.|.+||+.........+.   .........+..++++++|.++++...++.+.+|..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence              44444 468999999754322222110   000000125788999999987777666666666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=1.8e-13  Score=118.82  Aligned_cols=166  Identities=11%  Similarity=0.126  Sum_probs=129.6

Q ss_pred             eEEEeCCCcEEEEeccC--CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEH--GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h--~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++||.+|..+..+...  ..+.+++++|+|.++++...++.|.+||.. ++.+..+.  .+...+.+++++|+|.++++
T Consensus       102 i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          102 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            67888888887777543  235999999999988887788999999964 66666664  34456899999999998888


Q ss_pred             EeCCCeEEEEeCCCCcceEEEecc--CCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEecc-----CCceeEEE
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCH--QGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTLP-----GHAKTLDF  149 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~-----~~i~~~~~  149 (359)
                      .+.++.|.+||.. +..+..+..+  ...+.+|+++|+|+++++...++ .|.+||.. ++.+..+.     ..+.++++
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEE
Confidence            8889999999974 5555555433  35789999999999888887776 99999964 55555552     13678999


Q ss_pred             cCCc-eEEEEcCCcEEEEcCCC
Q 041916          150 SQKG-LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       150 s~~g-l~~~~~d~~i~i~d~~~  170 (359)
                      +|+| +++++.++.|.+|+...
T Consensus       259 ~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          259 MDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             ETTTEEEEEETTTEEEEEECSC
T ss_pred             CCCCcEEEECCCCeEEEEEccc
Confidence            9999 66667889999999644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=1.4e-14  Score=131.41  Aligned_cols=196  Identities=8%  Similarity=-0.056  Sum_probs=132.3

Q ss_pred             eEEEeCCCcEEEEeccCC-Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE--------------
Q 041916            2 PYIYNRDGTELHCLKEHG-AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV--------------   65 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~--------------   65 (359)
                      |++||..+.....+..+. .. ..+.|+|||++|+.++.++.|.+||+.+++....+..+......              
T Consensus        62 l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  141 (396)
T 3c5m_A           62 YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVG  141 (396)
T ss_dssp             EEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccc
Confidence            577883333444444433 33 44889999999999999999999999988876655545443222              


Q ss_pred             -----EEEcCCCCEEEEE-----eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEE
Q 041916           66 -----MRVNPFNGVVSLG-----HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKE------CKIKI  128 (359)
Q Consensus        66 -----~~~sp~~~~l~sg-----~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d------~~i~i  128 (359)
                           +.|+|++..++.+     ..+..|.+||+.+++..... .+...+..+.|+| ++..|+.++.+      ..|.+
T Consensus       142 ~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          142 IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             ccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence                 3567777765544     35678999999887754433 5677899999999 88877776643      36889


Q ss_pred             EEcCCceeeEeccC----CceeEEEcCCc--eEEEEcC-----CcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-
Q 041916          129 WDLRKYEVLQTLPG----HAKTLDFSQKG--LLAVGTG-----SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-  196 (359)
Q Consensus       129 wd~~~~~~~~~~~~----~i~~~~~s~~g--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  196 (359)
                      ||+..+........    .+..++|+|+|  ++.++.+     +.|++||+.++. . ..+....     ... +.|+| 
T Consensus       221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~-~~l~~~~-----~~~-~~~s~~  292 (396)
T 3c5m_A          221 VNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-N-EEVMVMP-----PCS-HLMSNF  292 (396)
T ss_dssp             EETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-E-EEEEECC-----SEE-EEEECS
T ss_pred             EECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-e-EEeeeCC-----CCC-CCccCC
Confidence            99876553332221    36778999999  5555433     349999976652 2 2222221     123 89999 


Q ss_pred             CCCEEEEEcC
Q 041916          197 YEDVLGIGHS  206 (359)
Q Consensus       197 ~~~~l~~~~~  206 (359)
                      +|+++++++.
T Consensus       293 dg~~l~~~~~  302 (396)
T 3c5m_A          293 DGSLMVGDGC  302 (396)
T ss_dssp             SSSEEEEEEC
T ss_pred             CCceEEEecC
Confidence            9998887653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=1.5e-13  Score=122.11  Aligned_cols=199  Identities=11%  Similarity=0.050  Sum_probs=145.0

Q ss_pred             CeEEEEEecCCCEEEEEecC------------------------CeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCE
Q 041916           20 AVLKLQFLRNHFLLASINKF------------------------GQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGV   74 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~   74 (359)
                      .+.+++++|+|+++++.+.+                        +.|.+||..+++.+..+. .+...+..++++|+|.+
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l  104 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY  104 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence            35899999999999888777                        479999999999877665 34457899999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCc-ceEEE---------eccCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEEcCCceeeEecc-
Q 041916           75 VSLGHSGGTVTMWKPTTAA-PLIKM---------LCHQGPVSALAFHP-NGHLMATSG-KECKIKIWDLRKYEVLQTLP-  141 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~-~~~~~---------~~h~~~v~~i~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-  141 (359)
                      +++.+.++.|.+||..... .+..+         ..+......|+|+| ++.++++.+ .++.|++|| .++..+..+. 
T Consensus       105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~  183 (329)
T 3fvz_A          105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE  183 (329)
T ss_dssp             EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred             EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence            9998899999999986442 45555         23344688999999 788888876 689999999 5566666652 


Q ss_pred             ------------CCceeEEEcCC-c-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          142 ------------GHAKTLDFSQK-G-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       142 ------------~~i~~~~~s~~-g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                                  ..+..++++|+ | ++++. .++.|.+||..++ ..+..+....  .+..+.+++|+| +..+.+.+ 
T Consensus       184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~--~~~~~~~~~~~p-g~~~~~~g-  258 (329)
T 3fvz_A          184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHAS--FGRNVFAISYIP-GFLFAVNG-  258 (329)
T ss_dssp             ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTT--TTTCEEEEEEET-TEEEEEEC-
T ss_pred             CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccc--cCCCcceeeecC-CEEEEeCC-
Confidence                        12789999998 6 55554 5689999997655 4444443221  334688999999 43333322 


Q ss_pred             CCeEEEEEcCCCCCccccccCC
Q 041916          207 MGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       207 dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                          .++++......+.+|+..
T Consensus       259 ----~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          259 ----KPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             ----CCCTTCSCCCCEEEEETT
T ss_pred             ----CEEeccCCCcEEEEEEcC
Confidence                245555566677777653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=4.5e-15  Score=134.70  Aligned_cols=200  Identities=8%  Similarity=-0.017  Sum_probs=137.0

Q ss_pred             EEe-CCCcEEEEeccCCC------eEEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            4 IYN-RDGTELHCLKEHGA------VLKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         4 iwd-~~g~~~~~l~~h~~------~~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      .+| .+|..+..+..+..      +..++|+|||++|+.+...   ..|.+||+.+++.......+......+.|+|+|+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            346 78888888876533      3678999999998776543   4789999988876443333332233488999999


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE-------------------EEEcCCCCEEEEE-----eCCCeEEEE
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA-------------------LAFHPNGHLMATS-----GKECKIKIW  129 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~-------------------i~~~~~~~~l~~~-----~~d~~i~iw  129 (359)
                      .|+.++.++.|.+||+.+++.......+.+....                   +.|+|+++.++.+     ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999988765555444442222                   3567777776654     356789999


Q ss_pred             EcCCceeeEec--cCCceeEEEcC-Cc--eEEEEcC------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916          130 DLRKYEVLQTL--PGHAKTLDFSQ-KG--LLAVGTG------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       130 d~~~~~~~~~~--~~~i~~~~~s~-~g--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      |+.+++.....  ...+..+.|+| +|  ++.++.+      ..|.+||+..+ . ...+..+.  ....+..++|+|+|
T Consensus       174 d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~--~~~~~~~~~~spdg  249 (396)
T 3c5m_A          174 DIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHA--EGESCTHEFWIPDG  249 (396)
T ss_dssp             ETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCC--TTEEEEEEEECTTS
T ss_pred             ECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccC--CCccccceEECCCC
Confidence            99987764444  45678999999 67  4444433      36888886543 2 22222221  12368889999999


Q ss_pred             CEEEEEcCC
Q 041916          199 DVLGIGHSM  207 (359)
Q Consensus       199 ~~l~~~~~d  207 (359)
                      +.|+.++.+
T Consensus       250 ~~l~~~~~~  258 (396)
T 3c5m_A          250 SAMAYVSYF  258 (396)
T ss_dssp             SCEEEEEEE
T ss_pred             CEEEEEecC
Confidence            987776543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=1.8e-14  Score=129.45  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=133.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCe-----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-----------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      ++.+++++...+|++|+.+ .+.+|++.+..           ....+ .+.. |+.++|  ++.+|+++ .+|.|.+||+
T Consensus        40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            4899999999999999988 56669975432           11223 3555 999999  88999998 8899999999


Q ss_pred             CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCceEEEEcCCcEEEEcCC
Q 041916           90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDF  169 (359)
Q Consensus        90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~  169 (359)
                      .+.........|..++.++.+.+.  .+++++.||.|.+||+.++.... +...|+|++|||+|++++..||.+++|+..
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~  190 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  190 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCceEEEEcCCcEEEEcCC
Confidence            887766667788888988887654  38889999999999999877643 456899999999998888999999999864


Q ss_pred             CCCCc--ccee------ecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          170 SGSHN--YSRY------MGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       170 ~~~~~--~~~~------~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      .. ..  ...+      ..+.. +...|.+++|.+++.++++-
T Consensus       191 ~~-~~~~k~~I~~Pp~~~~~~~-~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          191 NG-EMEKQFEFSLPSELEELPV-EEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TT-EEEEEEEECCCHHHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred             Cc-cccccceecCCcccccccC-CCeeEEEEEEecCCeEEEEE
Confidence            44 21  2223      11101 23489999999999998873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=1.8e-13  Score=122.02  Aligned_cols=194  Identities=12%  Similarity=0.039  Sum_probs=130.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC---------------------------CeEEEEECCCCeEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF---------------------------GQLRYQDVTMGEIV   53 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~   53 (359)
                      |++|+ .+|+.......+. +..++|+|||+.|+.++.+                           ..|.+||+.+++.+
T Consensus        87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            67788 5555544444444 8889999999988887642                           57999999988874


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGG-------TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---  123 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-------~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---  123 (359)
                      ..+.. . .+..++|+|+| ++++++.++       ...||.+.+++ ...+..+ ..+.++  +|||++|+.++.+   
T Consensus       166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            55554 3 78899999999 777776542       33444444444 3444444 555554  9999998887754   


Q ss_pred             -----CeEEEEEcCCceeeEec---cCCcee-EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916          124 -----CKIKIWDLRKYEVLQTL---PGHAKT-LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS  193 (359)
Q Consensus       124 -----~~i~iwd~~~~~~~~~~---~~~i~~-~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  193 (359)
                           ..|.+||  +++.....   ...+.. +.|+ +| +++++.++.++|| +.++ .. ..+..+..    .|.+++
T Consensus       239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~----~v~~~~  308 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDG-EI-KPIAKGRH----WIMGFD  308 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESS-SE-EEEECSSS----EEEEEE
T ss_pred             CccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCC-ce-EEEecCCC----eEEeee
Confidence                 3688888  55544333   235665 8999 88 6667788999999 7633 33 33333333    799999


Q ss_pred             EeeCCCEEEEEcCCCeE-EEEEc
Q 041916          194 FRPYEDVLGIGHSMGWS-SILVP  215 (359)
Q Consensus       194 ~~p~~~~l~~~~~dg~~-~i~~~  215 (359)
                      |+|  .++++++.++.. .+|..
T Consensus       309 ~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          309 VDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ESS--SEEEEEECSSSCCEEEEE
T ss_pred             eeC--cEEEEEcCCCChHHheEe
Confidence            999  666666665543 45543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=1.4e-13  Score=135.04  Aligned_cols=189  Identities=6%  Similarity=-0.110  Sum_probs=133.7

Q ss_pred             EEEEEecCCCEEEEEecCC-----eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-------------
Q 041916           22 LKLQFLRNHFLLASINKFG-----QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT-------------   83 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~-------------   83 (359)
                      ..++|||||++||.++.++     .|++||+.+|+.+.....+ ..+..++|+|||+.|+.++.++.             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            7899999999998776543     8999999999876543322 23678999999999999888766             


Q ss_pred             ---EEEEeCCCCcce--EEEe--ccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCC------ce-eeEec---c
Q 041916           84 ---VTMWKPTTAAPL--IKML--CHQGPVSALAFHPNGHLMATSGK-----ECKIKIWDLRK------YE-VLQTL---P  141 (359)
Q Consensus        84 ---v~lwd~~~~~~~--~~~~--~h~~~v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~-~~~~~---~  141 (359)
                         |++|++.++...  ..+.  .|...+.++.|+|||++|+.++.     +..|.+||+.+      +. ....+   .
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~  286 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence               999999887632  2223  24556889999999999888764     56899999986      42 23333   2


Q ss_pred             CCceeEEEcCCc--eEEEEcC----CcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          142 GHAKTLDFSQKG--LLAVGTG----SFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       142 ~~i~~~~~s~~g--l~~~~~d----~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ..+. ..|+|+|  ++..+..    +.|.+||+.++.. ....+..+.  ....+.+++|++++.+++++..+|...+++
T Consensus       287 ~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          287 EGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             SSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             CcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--CCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence            2333 3588888  5555532    3699999766531 234444442  123688899998778888888888766554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=2.1e-13  Score=117.21  Aligned_cols=205  Identities=9%  Similarity=-0.041  Sum_probs=136.2

Q ss_pred             eEEEeCCCcEEEEec-cC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYNRDGTELHCLK-EH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~~~~~l~-~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |++||..+.....+. .+ ..+.++++++++.++++.. ++.|.+||...... ..+. .....+.+++++|+|.++++.
T Consensus        48 i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~  125 (270)
T 1rwi_B           48 VVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVAD  125 (270)
T ss_dssp             EEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEE
T ss_pred             EEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEE
Confidence            456663332222222 22 3458999999998666665 88999999876543 3333 233578999999999988887


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c--CCceeEEEcCCc-e
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P--GHAKTLDFSQKG-L  154 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~--~~i~~~~~s~~g-l  154 (359)
                      ..++.|.+|+..+.............+.+++++|+|+++++...++.|.+||.......... .  ..+.+++++++| +
T Consensus       126 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          126 RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV  205 (270)
T ss_dssp             GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCE
T ss_pred             CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCE
Confidence            78899999986655433222233345788999999997777777889999999876544332 1  457899999998 6


Q ss_pred             EEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          155 LAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       155 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +++. .++.|.+|+.... ........+    ...+.+++++|+|.++++...++.+.++
T Consensus       206 ~v~~~~~~~v~~~~~~~~-~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          206 YVTEHNTNQVVKLLAGST-TSTVLPFTG----LNTPLAVAVDSDRTVYVADRGNDRVVKL  260 (270)
T ss_dssp             EEEETTTSCEEEECTTCS-CCEECCCCS----CSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             EEEECCCCcEEEEcCCCC-cceeeccCC----CCCceeEEECCCCCEEEEECCCCEEEEE
Confidence            6555 4679999996443 221111111    1268899999999766665555544444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=2.4e-13  Score=118.66  Aligned_cols=198  Identities=8%  Similarity=-0.056  Sum_probs=137.3

Q ss_pred             CcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916            9 GTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus         9 g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      +..+..+..+... .+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++|+|.++++...++.|.+
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence            3444555555554 9999999998 7788888999999999877  6677777788999999999998888777889999


Q ss_pred             EeCCCCcceEEEecc----CCCeEEEEEcCCCCEEEEE----e-------------CCCeEEEEEcCCceeeEec--cCC
Q 041916           87 WKPTTAAPLIKMLCH----QGPVSALAFHPNGHLMATS----G-------------KECKIKIWDLRKYEVLQTL--PGH  143 (359)
Q Consensus        87 wd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~~~----~-------------~d~~i~iwd~~~~~~~~~~--~~~  143 (359)
                      ||+.+++........    ...+++++++|+|+++++.    +             ..+.|..+|.. +......  ...
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence            999887654332221    2346789999999988873    2             13466667665 4432222  335


Q ss_pred             ceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          144 AKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       144 i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +..++|+|+| ++++. .++.|.+|++......   ...+ ..   ....+.+++++++|.++++.  ++.+.+|.+
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV---EPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC---SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC---CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            6899999999 44443 4689999997522222   1222 11   22356789999999866665  554555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=2.4e-12  Score=122.09  Aligned_cols=214  Identities=10%  Similarity=0.006  Sum_probs=152.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEc----CCCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVN----PFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s----p~~~   73 (359)
                      +|.++| .+++.+.++.....+..+.|+|||++|++++.|+.|.+||+.  +++.+..+.... ....++|+    |+|+
T Consensus       178 ~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk  256 (567)
T 1qks_A          178 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDK  256 (567)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTT
T ss_pred             eEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCC
Confidence            478999 889999999877777899999999999999999999999996  888888887654 46789999    6998


Q ss_pred             EEEEEe-CCCeEEEEeCCCCcceEEEec----------cCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCcee--eE
Q 041916           74 VVSLGH-SGGTVTMWKPTTAAPLIKMLC----------HQG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEV--LQ  138 (359)
Q Consensus        74 ~l~sg~-~dg~v~lwd~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~--~~  138 (359)
                      ++++++ .+++|.++|..+.+++..+..          |.. .+..+.+++++.. ++....+|.|.++|......  +.
T Consensus       257 ~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~  336 (567)
T 1qks_A          257 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  336 (567)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence            877765 559999999999988877652          222 5788999997665 44555679999999987532  22


Q ss_pred             ec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeec-ccCCCCcceEEEEEeeCC-CEEEEEc-CCCeE
Q 041916          139 TL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMG-HSMVKGYQIGKVSFRPYE-DVLGIGH-SMGWS  210 (359)
Q Consensus       139 ~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~-~~l~~~~-~dg~~  210 (359)
                      .+  ......+.|+|+|  +++++ .++.|.++|+.++ +....+.. -...+...-..+ ++|++ .+++++. .++.+
T Consensus       337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~V  414 (567)
T 1qks_A          337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSV  414 (567)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred             eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeE
Confidence            23  2356789999999  44444 5689999998776 33333322 111111111122 57774 4444554 34677


Q ss_pred             EEEEcCC
Q 041916          211 SILVPGS  217 (359)
Q Consensus       211 ~i~~~~~  217 (359)
                      .++.+..
T Consensus       415 svid~~~  421 (567)
T 1qks_A          415 ALIGTDP  421 (567)
T ss_dssp             EEEECCT
T ss_pred             EEecCCC
Confidence            7776554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=4.2e-13  Score=116.08  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=138.8

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC-CCeE
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVS  106 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~  106 (359)
                      .+++|++++.++.|.+||..+|+.+..+..+. ..+++++++|+|++|+  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            36789999999999999999999999999876 4789999999999888  45778999999 899888888653 4788


Q ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEecc---------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916          107 ALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN  174 (359)
Q Consensus       107 ~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~  174 (359)
                      ++.+.|+|+++++.+. ++.|..+|. +++.+..+.         .....+++.++|  +++...++.|.+||.. + +.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~  157 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QL  157 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CE
Confidence            9999999999999887 788888886 677766652         134567788999  4445567999999965 5 55


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +..+....     .+.++.+.+++.+++++..++.+..+.+.
T Consensus       158 ~w~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          158 LNSVKLSG-----TPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             EEEEECSS-----CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             EEEEECCC-----CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            55555432     45677889999999888888755555433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=1.8e-13  Score=133.92  Aligned_cols=192  Identities=8%  Similarity=-0.087  Sum_probs=131.8

Q ss_pred             CCCe-EEEEEecCCCEEEE-----EecCCeEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCe------
Q 041916           18 HGAV-LKLQFLRNHFLLAS-----INKFGQLRYQDVTMGEIVGNFRTGLGRT--DVMRVNPFNGVVSLGHSGGT------   83 (359)
Q Consensus        18 h~~~-~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~sg~~dg~------   83 (359)
                      |... .+++|||||++||.     |+.+..|++||+.+|+.+.  ..+...+  ..++|+|||+.|+.++.|..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            4434 88999999999884     3345689999999988641  1122222  68999999999999988776      


Q ss_pred             -------EEEEeCCCCcc--eEEEe--ccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceeeEec--cCCcee
Q 041916           84 -------VTMWKPTTAAP--LIKML--CHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEVLQTL--PGHAKT  146 (359)
Q Consensus        84 -------v~lwd~~~~~~--~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~--~~~i~~  146 (359)
                             |++|++.++..  ...+.  .|...+.++.|+|||++|+.++.++    .|.+||..++......  ...+..
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  276 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence                   99999988763  22232  4556789999999999998877665    6777776555432222  334555


Q ss_pred             EEEcCCc-eEEEEc----CCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          147 LDFSQKG-LLAVGT----GSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       147 ~~~s~~g-l~~~~~----d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ..+ ++| ++..+.    ++.|.+||+.++.. ....+..+.  +...+.+++|+ ++.++++...++...+++.
T Consensus       277 ~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          277 VHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--SSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--SSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            556 455 555443    47899999766521 123343331  23368888988 6778888888888777654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=1.9e-12  Score=114.83  Aligned_cols=204  Identities=10%  Similarity=0.032  Sum_probs=136.7

Q ss_pred             eEEEe-CCCcEEEEeccC-CCeEEEEEecCCCEEEEEecC----CeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCC
Q 041916            2 PYIYN-RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKF----GQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~   73 (359)
                      |++|| .++.....+..+ ..+.+++|+|++.++++...+    +.|.+||..++.....+.  .+...+.+++++|+|.
T Consensus        68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~  147 (333)
T 2dg1_A           68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG  147 (333)
T ss_dssp             EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred             EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence            67888 556655444333 345999999999988877666    689999998876543333  2345689999999998


Q ss_pred             EEEEEeC------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCC-ceeeE-------
Q 041916           74 VVSLGHS------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRK-YEVLQ-------  138 (359)
Q Consensus        74 ~l~sg~~------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~-~~~~~-------  138 (359)
                      ++++...      .+.|..||..+++.. .+..+...+.+++|+|+|++|+.+ +.++.|.+||+.+ +..+.       
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~  226 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP  226 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred             EEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence            8877654      356777776654433 333334457899999999866554 4578999999964 32221       


Q ss_pred             -eccC--CceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          139 -TLPG--HAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       139 -~~~~--~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                       .+.+  .+..++++++| ++++. .++.|.+||. .+ .....+..+..  .+...+.+++|+|++..|++++.+|
T Consensus       227 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          227 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CC-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence             1222  56889999999 55544 5689999996 33 34444432210  0011478999999988777666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=1.2e-12  Score=116.27  Aligned_cols=204  Identities=10%  Similarity=-0.001  Sum_probs=143.4

Q ss_pred             eEEEe-CCCcEEEEecc------CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916            2 PYIYN-RDGTELHCLKE------HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG   73 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~------h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~   73 (359)
                      |.+|| .+++....+..      ... +..+.+. ++.++++...++.|.+||..+++.+..+.. ...+..++++|++.
T Consensus        19 l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~   96 (328)
T 3dsm_A           19 LSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK   96 (328)
T ss_dssp             EEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE
T ss_pred             EEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe
Confidence            67888 66776554421      112 3778775 355566666689999999999999888863 46788999999985


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEec--cCCc
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTL--PGHA  144 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i  144 (359)
                      ++++...++.|.+||+.+++....+....     .....+++  ++..+++++  .++.|.+||+.+++.+..+  ...+
T Consensus        97 lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p  174 (328)
T 3dsm_A           97 AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP  174 (328)
T ss_dssp             EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB
T ss_pred             EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc
Confidence            55555489999999999988777666433     13456777  445555555  4889999999999887776  3456


Q ss_pred             eeEEEcCCc-eEEEEcC-----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          145 KTLDFSQKG-LLAVGTG-----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      ..++++|+| +++++.+           +.|.+||..++ .....+...   .+.....++|+|+++.|.++..  .+.+
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~---~g~~p~~la~~~d~~~lyv~~~--~v~~  248 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFK---LGDWPSEVQLNGTRDTLYWINN--DIWR  248 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECC---TTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecC---CCCCceeEEEecCCCEEEEEcc--EEEE
Confidence            889999999 5555432           68999997665 333333321   1236889999999998877654  4444


Q ss_pred             EEc
Q 041916          213 LVP  215 (359)
Q Consensus       213 ~~~  215 (359)
                      +..
T Consensus       249 ~d~  251 (328)
T 3dsm_A          249 MPV  251 (328)
T ss_dssp             EET
T ss_pred             EEC
Confidence            443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=7.5e-13  Score=129.86  Aligned_cols=210  Identities=9%  Similarity=-0.071  Sum_probs=141.8

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCe----------------EEEEECCCCeE--EEEEe--cCC
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQ----------------LRYQDVTMGEI--VGNFR--TGL   60 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~----------------i~iwd~~~~~~--~~~~~--~~~   60 (359)
                      |++|| .+|+.+.....+..+.+++|+|||+.|+.++.++.                |++|++.++..  ...+.  .+.
T Consensus       153 i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~  232 (710)
T 2xdw_A          153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP  232 (710)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred             EEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence            78999 67766553333333467999999999998887766                99999988762  22223  245


Q ss_pred             CCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCC------Cc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCC----C
Q 041916           61 GRTDVMRVNPFNGVVSLGHS-----GGTVTMWKPTT------AA-PLIKMLCHQGPVSALAFHPNGHLMATSGKE----C  124 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~-----dg~v~lwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----~  124 (359)
                      ..+..+.|+|||++|+.++.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+..    +
T Consensus       233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~  311 (710)
T 2xdw_A          233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNY  311 (710)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTC
T ss_pred             eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCC
Confidence            56789999999998887764     56899999986      43 46667667666655 588999988776653    3


Q ss_pred             eEEEEEcCCcee--eEec----c-CCceeEEEcCCc--eEEEEcCC--cEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916          125 KIKIWDLRKYEV--LQTL----P-GHAKTLDFSQKG--LLAVGTGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS  193 (359)
Q Consensus       125 ~i~iwd~~~~~~--~~~~----~-~~i~~~~~s~~g--l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  193 (359)
                      .|.+||+.++..  ...+    . ..+..++|++++  +++...++  .|.+|++.++ .....+..+..    .+..+.
T Consensus       312 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~----~v~~~~  386 (710)
T 2xdw_A          312 RLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVG----SVVGYS  386 (710)
T ss_dssp             EEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSS----EEEEEE
T ss_pred             EEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCc----eEEEEe
Confidence            699999987631  1222    2 246788999777  44555666  4677776455 33344444433    788899


Q ss_pred             EeeCCCEEEEEcC----CCeEEEEEcCC
Q 041916          194 FRPYEDVLGIGHS----MGWSSILVPGS  217 (359)
Q Consensus       194 ~~p~~~~l~~~~~----dg~~~i~~~~~  217 (359)
                      ++|++..++....    .+.+..+...+
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            9999876664322    23455555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=3.5e-12  Score=115.06  Aligned_cols=205  Identities=11%  Similarity=0.011  Sum_probs=131.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGR   62 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~   62 (359)
                      +|++|| .+++.+.++.....+ .++|+|||++|+++.          .++.|.+||..+++.+..+...       ...
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            478999 888888888876666 999999999998876          3678999999998888777543       123


Q ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCC-CEEEEEeCC---------------
Q 041916           63 TDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNG-HLMATSGKE---------------  123 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~~~~~d---------------  123 (359)
                      ...++|+|||++|++++.  ++.|.++| .+++.+.. +... +   ++.+.|++ ..+++.+.|               
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~  201 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEE
Confidence            568999999999998874  57899999 98887766 5321 1   12222222 112223333               


Q ss_pred             --------------------------------CeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--e
Q 041916          124 --------------------------------CKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--L  154 (359)
Q Consensus       124 --------------------------------~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l  154 (359)
                                                      +.+.+.|+.+..  .+..+             +.....+.++|++  +
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence                                            344444443321  11111             1112236788887  4


Q ss_pred             EEEEc----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCC
Q 041916          155 LAVGT----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGS  217 (359)
Q Consensus       155 ~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~  217 (359)
                      +++..          ++.|.++|+.+. +.+..+..-     ....+++|+|||+ .++++. .++.+.++...+
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g-----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLG-----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECC-----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            44432          357999997766 444444321     1588999999998 666655 356666655443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.56  E-value=3.4e-13  Score=121.36  Aligned_cols=190  Identities=12%  Similarity=0.039  Sum_probs=124.7

Q ss_pred             eEEEe-CCCcEEEEeccC-------CCeEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEE-EecCCCCeEEEEEcC
Q 041916            2 PYIYN-RDGTELHCLKEH-------GAVLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-------~~~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp   70 (359)
                      |.+|| .+++.+..+..+       ..+..++|+|||++|++++.  +++|.+||+.+++.+.. +...  ....+.+.|
T Consensus        83 v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p  160 (361)
T 2oiz_A           83 VEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP  160 (361)
T ss_dssp             EEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred             EEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence            78999 788888887643       23588999999999998864  58999999999988877 5432  112233444


Q ss_pred             CC-CEEEEEeCCCeEEEEeCCC-Ccce-------------------------------------------------EEEe
Q 041916           71 FN-GVVSLGHSGGTVTMWKPTT-AAPL-------------------------------------------------IKML   99 (359)
Q Consensus        71 ~~-~~l~sg~~dg~v~lwd~~~-~~~~-------------------------------------------------~~~~   99 (359)
                      ++ ..+++.+.||.+.+|++.. ++..                                                 ..+.
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence            43 3444444445444444322 1111                                                 0000


Q ss_pred             c------c----CCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--e
Q 041916          100 C------H----QGPVSALAFHPNGHLMATSGK-----------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--L  154 (359)
Q Consensus       100 ~------h----~~~v~~i~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l  154 (359)
                      .      +    ......++|+|++..++++..           .+.|.+||+.+++.+..+  .. +.+++|+|+|  +
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l  319 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLM  319 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEE
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEE
Confidence            0      0    011112789999888877643           348999999999998887  44 9999999999  4


Q ss_pred             EEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCC
Q 041916          155 LAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      ++++ ++.|.+||..++. +.+..+...    +.....++++|+|.
T Consensus       320 ~v~n-~~~v~v~D~~t~~l~~~~~i~~~----G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          320 LTLD-GGNVNVYDISQPEPKLLRTIEGA----AEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEC-SSCEEEEECSSSSCEEEEEETTS----CSSEEEEEECCCSC
T ss_pred             EEeC-CCeEEEEECCCCcceeeEEeccC----CCCcEEEEecCCCC
Confidence            4444 4999999976651 233333233    23678899999985

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=8.4e-12  Score=109.07  Aligned_cols=195  Identities=10%  Similarity=0.047  Sum_probs=128.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~   76 (359)
                      |+.|| .++.. ..+.....+.+++++|+|.++++.  ++.|.+||..+++........    ...++.++++|+|++++
T Consensus        37 i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~  113 (297)
T 3g4e_A           37 VCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFA  113 (297)
T ss_dssp             EEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEE
T ss_pred             EEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEE
Confidence            56777 34433 444444456999999999965543  568999999888754333221    23578999999999777


Q ss_pred             EEeC-----------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEc--CCcee-----e
Q 041916           77 LGHS-----------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDL--RKYEV-----L  137 (359)
Q Consensus        77 sg~~-----------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~--~~~~~-----~  137 (359)
                      +...           .+.|..++.. +. +..+..+....+.++|+|+++.|+.+ +.++.|.+||+  .++..     +
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~  191 (297)
T 3g4e_A          114 GTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV  191 (297)
T ss_dssp             EEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred             ecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence            5432           2345555543 33 33333344456899999999977554 55789999997  34432     2


Q ss_pred             Eec---cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEEEcC
Q 041916          138 QTL---PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGIGHS  206 (359)
Q Consensus       138 ~~~---~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~  206 (359)
                      ..+   .+.+..++++++| ++++. .++.|..||..++ .....+..+.    ..+++++|. |+++.|.+++.
T Consensus       192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSS----SBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCC----CCceEEEEeCCCCCEEEEEcC
Confidence            223   2457899999999 55554 5678999997656 4555554432    279999998 88886655443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.52  E-value=2e-12  Score=110.91  Aligned_cols=189  Identities=9%  Similarity=-0.037  Sum_probs=129.0

Q ss_pred             CeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           20 AVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      .+.++++++++.+++ +.+.++.|.+||..++........+...+.++++++++.++++.. ++.|.+||...... ..+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence            669999999999777 446788999999765543222223335678999999998766665 88999999876543 333


Q ss_pred             e-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCC
Q 041916           99 L-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGS  172 (359)
Q Consensus        99 ~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~  172 (359)
                      . .....+.+++++|+|+++++...++.|.+||..+.......   ...+.+++++|+| ++++. .++.|.+||.... 
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-  181 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-  181 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-
Confidence            2 23356899999999997777777889999987665433222   2357899999999 66655 4689999996544 


Q ss_pred             CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          173 HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      .........    ...+.+++++++|.++++...++.+.++..
T Consensus       182 ~~~~~~~~~----~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          182 NQVVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             CEEECCCSS----CCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             ceEeecccC----CCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence            221111111    136889999999977766666665555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=5.3e-12  Score=119.76  Aligned_cols=183  Identities=9%  Similarity=0.019  Sum_probs=136.4

Q ss_pred             cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCcceEEEeccCCCe
Q 041916           28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT--TAAPLIKMLCHQGPV  105 (359)
Q Consensus        28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~--~~~~~~~~~~h~~~v  105 (359)
                      |.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+.  +++.+..+....+ .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence            44556777778999999999999999888754 356799999999999999999999999996  7777777765443 5


Q ss_pred             EEEEEc----CCCCEEEEEeC-CCeEEEEEcCCceeeEecc--C------------CceeEEEcCCc---eEEEEcCCcE
Q 041916          106 SALAFH----PNGHLMATSGK-ECKIKIWDLRKYEVLQTLP--G------------HAKTLDFSQKG---LLAVGTGSFV  163 (359)
Q Consensus       106 ~~i~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--~------------~i~~~~~s~~g---l~~~~~d~~i  163 (359)
                      ..++|+    |||+++++++. +++|.++|..+.+++..+.  +            .+..+..++++   ++....+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            789999    69999888775 5899999999998877662  1            35678888887   3444456999


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEcC
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVPG  216 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~~  216 (359)
                      .++|.............    .+....++.|+|++++++++. .++.+.++.+.
T Consensus       323 ~~vd~~~~~~~~v~~i~----~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~  372 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEIS----AERFLHDGGLDGSHRYFITAANARNKLVVIDTK  372 (567)
T ss_dssp             EEEETTCSSEEEEEEEE----CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             EEEecCCCccceeeeee----ccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence            99996553211111111    122577889999999887655 45556665544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=5.4e-11  Score=103.29  Aligned_cols=205  Identities=10%  Similarity=0.003  Sum_probs=143.0

Q ss_pred             eEEEeCCCcEEEEe-cc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCL-KE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l-~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |.+||..+...... .. ...+.++++++++.++++...++.|..||.. +.. ..+.  .....+.++++.|++.++++
T Consensus        38 v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~  115 (299)
T 2z2n_A           38 ISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFT  115 (299)
T ss_dssp             EEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEE
Confidence            56777445433221 22 2345999999999988887778899999986 443 2332  24457899999999998888


Q ss_pred             EeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCC
Q 041916           78 GHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQK  152 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~  152 (359)
                      ...++.|.+||. ++..... ...+...+.+++++++|.++++...++.|..||. +++.... .   ...+.+++++++
T Consensus       116 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          116 EMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             ecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            878889999998 5543322 2233456899999999988877777789999999 6654432 2   234689999999


Q ss_pred             c-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          153 G-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       153 g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      | ++++. .++.|.+||. ++ .. ..+....  ....+.+++++++|.++++...++.+..+.+
T Consensus       194 g~l~v~~~~~~~i~~~~~-~g-~~-~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          194 DALWFVEIIGNKIGRITT-SG-EI-TEFKIPT--PNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             SSEEEEETTTTEEEEECT-TC-CE-EEEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCEEEEccCCceEEEECC-CC-cE-EEEECCC--CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            9 66665 4689999997 54 22 2221111  2236889999999987777666776777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=6.3e-11  Score=103.85  Aligned_cols=204  Identities=14%  Similarity=0.120  Sum_probs=134.5

Q ss_pred             eEEEe-CCCcEEEEec----cC-CCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEE-Eec----CCCCeEEEEEc
Q 041916            2 PYIYN-RDGTELHCLK----EH-GAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGN-FRT----GLGRTDVMRVN   69 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~----~h-~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~s   69 (359)
                      |++|| .+|+......    ++ ..+.+++++++ +.++++.. .+.|.+||.. ++.... ...    ....+.+++++
T Consensus        48 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d  125 (314)
T 1pjx_A           48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD  125 (314)
T ss_dssp             EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred             EEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence            67888 6666543222    12 34589999999 76555544 4479999998 765433 221    12357899999


Q ss_pred             CCCCEEEEEeCC---------------CeEEEEeCCCCcceEEEeccCCCeEEEEEc----CCCCEEEEE-eCCCeEEEE
Q 041916           70 PFNGVVSLGHSG---------------GTVTMWKPTTAAPLIKMLCHQGPVSALAFH----PNGHLMATS-GKECKIKIW  129 (359)
Q Consensus        70 p~~~~l~sg~~d---------------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~----~~~~~l~~~-~~d~~i~iw  129 (359)
                      |+|.++++...+               +.|..||.. ++.. .+..+......++|+    |+++.|+++ ..++.|.+|
T Consensus       126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~  203 (314)
T 1pjx_A          126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence            999988877655               578888876 5433 333334456889999    999766555 567899999


Q ss_pred             EcC-Cce-----eeEecc----CCceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          130 DLR-KYE-----VLQTLP----GHAKTLDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       130 d~~-~~~-----~~~~~~----~~i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      |+. ++.     ....+.    ..+..++++++| ++++ ..++.|.+||..++ .....+..+.    ..+.+++|+|+
T Consensus       204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~----~~~~~i~~~~d  278 (314)
T 1pjx_A          204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPF----EKPSNLHFKPQ  278 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSS----SCEEEEEECTT
T ss_pred             ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeCCC----CCceeEEECCC
Confidence            986 443     223333    457889999999 5554 46789999996544 3444443332    37899999999


Q ss_pred             CCEEEEE-cCCCeEEEEE
Q 041916          198 EDVLGIG-HSMGWSSILV  214 (359)
Q Consensus       198 ~~~l~~~-~~dg~~~i~~  214 (359)
                      ++.|.++ ..++.+..+.
T Consensus       279 g~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          279 TKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             SSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEe
Confidence            9855444 3445444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=1.9e-11  Score=107.27  Aligned_cols=199  Identities=14%  Similarity=0.085  Sum_probs=134.6

Q ss_pred             eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916            2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~   76 (359)
                      |+.|+.+|.. ..+..+.. +.+++++++|+++++...++.|.+|+.. +.........    ...++.++++|+|.+++
T Consensus        69 i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~  146 (305)
T 3dr2_A           69 VLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWF  146 (305)
T ss_dssp             EEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEE
T ss_pred             EEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEE
Confidence            5566755553 34444444 4999999999977766666889999986 6543222111    13467899999999888


Q ss_pred             E----EeC-------------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCC
Q 041916           77 L----GHS-------------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRK  133 (359)
Q Consensus        77 s----g~~-------------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~  133 (359)
                      +    |..             .+.|..||..+++.....  .....+.++|+||++.|+++...      +.|.+||+..
T Consensus       147 td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            6    332             356888888777654333  34456889999999988887665      7899999875


Q ss_pred             cee--eEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          134 YEV--LQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       134 ~~~--~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ...  ...+    .+.+..++++++| +++++. +.|.+|+. .+ .....+..+.     .+.+++|+|+++.|.+++.
T Consensus       225 ~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-~gv~~~~~-~g-~~~~~~~~~~-----~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          225 GALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-TGVCVFDS-DG-QLLGHIPTPG-----TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             TEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-SEEEEECT-TS-CEEEEEECSS-----CCCEEEECTTSCEEEEEET
T ss_pred             CCccCCeEEEECCCCCCCeEEECCCCCEEEecC-CcEEEECC-CC-CEEEEEECCC-----ceeEEEEeCCCCEEEEEcC
Confidence            431  1111    3456789999999 666654 45999995 33 4444444332     4888999999988888777


Q ss_pred             CCeEEE
Q 041916          207 MGWSSI  212 (359)
Q Consensus       207 dg~~~i  212 (359)
                      ++...+
T Consensus       297 ~~l~~~  302 (305)
T 3dr2_A          297 PCLWML  302 (305)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            764443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=1.4e-11  Score=110.19  Aligned_cols=97  Identities=6%  Similarity=-0.087  Sum_probs=79.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecCC-------CCe
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTGL-------GRT   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v   63 (359)
                      |.++| .+++.+.++.....+. ++++|||++|++++          .++.|.+||..+++.+..+....       ...
T Consensus        61 V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P  139 (386)
T 3sjl_D           61 QFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP  139 (386)
T ss_dssp             EEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence            77889 8889998888766665 99999999887765          36789999999999988886432       246


Q ss_pred             EEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEEe
Q 041916           64 DVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~~~   99 (359)
                      ..++|+|||++++++..  ++.|.++|+.+++.+.++.
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            78999999999888764  6899999999987766653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1.3e-10  Score=102.97  Aligned_cols=194  Identities=13%  Similarity=0.047  Sum_probs=127.4

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT----GLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++||..+..+..+.....+.+++|+|+|.++++. .+ .|.+||..+++.......    ....+++++++|+|.++++
T Consensus        73 i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~  150 (326)
T 2ghs_A           73 LHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG  150 (326)
T ss_dssp             EEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE
Confidence            56777444444444433446999999999877764 34 599999988875433221    1235889999999987765


Q ss_pred             EeC------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC--Cc-e-----eeEec--
Q 041916           78 GHS------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLR--KY-E-----VLQTL--  140 (359)
Q Consensus        78 g~~------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~-----~~~~~--  140 (359)
                      ...      .+.|..++  +++. ..+..+......++|+|+|+.|+.+ +.++.|.+||+.  ++ .     .+..+  
T Consensus       151 ~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~  227 (326)
T 2ghs_A          151 TMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG  227 (326)
T ss_dssp             EEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred             eCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC
Confidence            542      24566666  4443 3333333457899999999877655 456899999986  55 3     22233  


Q ss_pred             -cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEEEcC
Q 041916          141 -PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGIGHS  206 (359)
Q Consensus       141 -~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~  206 (359)
                       .+.+..++++++| ++++. .++.|.+||. .+ .....+..+.    ..+++++|+ |+++.|.+++.
T Consensus       228 ~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          228 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPG----KQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSC----SBEEEEEEESTTSCEEEEEEB
T ss_pred             CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCC----CCcEEEEEecCCCCEEEEEec
Confidence             2346789999999 55554 4688999996 44 3444444332    269999998 88876655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=1.9e-11  Score=111.26  Aligned_cols=211  Identities=11%  Similarity=0.023  Sum_probs=143.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGR   62 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~   62 (359)
                      +|.++| .+++.+.++.....+ .++++||+++|++++          .++.|.++|..+++.+..+...       ...
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY  178 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence            377899 888999999877777 999999999888775          3679999999999998887642       234


Q ss_pred             eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEEeccC-------CCeEEEE------------------------
Q 041916           63 TDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIKMLCHQ-------GPVSALA------------------------  109 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~~~~h~-------~~v~~i~------------------------  109 (359)
                      ...++|+|||++++++..  ++.|.+.|+.+++.+..+....       +.-..++                        
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~  258 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV  258 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence            568999999999998874  5789999999988766654210       0001122                        


Q ss_pred             -------------EcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-------------cCCceeEEEcCCc--eEEEEc
Q 041916          110 -------------FHPNGHLMATSGKECKIKIWDLRKYEVL--QTL-------------PGHAKTLDFSQKG--LLAVGT  159 (359)
Q Consensus       110 -------------~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-------------~~~i~~~~~s~~g--l~~~~~  159 (359)
                                   |.+++..++..+..+.|.+.|+......  ..+             +.....++++|++  +++...
T Consensus       259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~  338 (426)
T 3c75_H          259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD  338 (426)
T ss_dssp             CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred             eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence                         3444444444455566666676543211  111             1122347899998  444432


Q ss_pred             ----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCCC
Q 041916          160 ----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGSG  218 (359)
Q Consensus       160 ----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~~  218 (359)
                                ++.|.++|+.+. +.+..+..-.     ...++.|+|+++ .++++. .++.+.++...+.
T Consensus       339 ~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          339 QRDEWKHKAASRFVVVLNAETG-ERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             ccccccccCCCCEEEEEECCCC-eEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence                      357999998776 4444443221     588999999998 777766 4777777775443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.2e-11  Score=121.96  Aligned_cols=187  Identities=9%  Similarity=-0.024  Sum_probs=125.1

Q ss_pred             EEEEEecCCCEEEEEecC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-------------
Q 041916           22 LKLQFLRNHFLLASINKF-----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT-------------   83 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~-------------   83 (359)
                      ..++|||||++||.++.+     ..|++||+.+|+.+... .+...+..++|+|| +.|+.++.++.             
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~  243 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ  243 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence            789999999999887653     46999999999876532 12222357899999 98888876654             


Q ss_pred             -EEEEeCCCCcc--eEEEec--cCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCc--eeeEec---cCCceeEE
Q 041916           84 -VTMWKPTTAAP--LIKMLC--HQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKY--EVLQTL---PGHAKTLD  148 (359)
Q Consensus        84 -v~lwd~~~~~~--~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~~~~~~---~~~i~~~~  148 (359)
                       |.+|++.++..  ...+..  +...+.++.|+|||++|+..+.++     .|++||+.++  .+...+   ...+... 
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-  322 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-  322 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-
Confidence             89999987753  223332  334588999999999988877543     8999999876  313333   2233333 


Q ss_pred             EcCCc--eEEEEc----CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          149 FSQKG--LLAVGT----GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       149 ~s~~g--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ++|+|  ++..+.    .+.|.+||+.++......+..+   ....+.+++|+ ++.++++...+|...+++.
T Consensus       323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---SKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---CSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            34777  555554    3469999976531122233333   12257778887 5667777788887776653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=1.8e-10  Score=99.99  Aligned_cols=198  Identities=9%  Similarity=-0.061  Sum_probs=136.3

Q ss_pred             eEEEeCCCcEEE-Eec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYNRDGTELH-CLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~~~~-~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+.||.++.... .+. ....+.+++++|++.++++...++.|.+||. ++..... ...+...+.++++.++|.++++.
T Consensus        80 i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A           80 IGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             EEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            566774454321 222 2234599999999988888777889999998 5654432 22344578999999999888877


Q ss_pred             eCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-cc---CCceeEEEcCCc
Q 041916           79 HSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-LP---GHAKTLDFSQKG  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~---~~i~~~~~s~~g  153 (359)
                      ..++.|..||. +++.... +..+...+.+++++++|.++++...++.|.+||. ++..... ..   ..+.+++++++|
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC
Confidence            77889999998 6654332 2234456889999999997777667889999999 6654322 22   457899999999


Q ss_pred             -eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          154 -LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       154 -l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                       ++++. .++.|..||. .+ . ...+....  ....+.++++ +++.++++.+.++
T Consensus       237 ~l~v~~~~~~~i~~~d~-~g-~-~~~~~~~~--~~~~~~~i~~-~~g~l~v~~~~~~  287 (299)
T 2z2n_A          237 DLWFTEWGANKIGRLTS-NN-I-IEEYPIQI--KSAEPHGICF-DGETIWFAMECDK  287 (299)
T ss_dssp             CEEEEETTTTEEEEEET-TT-E-EEEEECSS--SSCCEEEEEE-CSSCEEEEETTTE
T ss_pred             CEEEeccCCceEEEECC-CC-c-eEEEeCCC--CCCccceEEe-cCCCEEEEecCCc
Confidence             66665 5689999996 33 2 22222111  2236889999 8888766655443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.44  E-value=2.9e-12  Score=125.40  Aligned_cols=198  Identities=7%  Similarity=-0.124  Sum_probs=128.4

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCe-------------EEEEECCCCe----EEEEEecCC
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQ-------------LRYQDVTMGE----IVGNFRTGL   60 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~~~   60 (359)
                      +|++|| .+|+.+. ......+  ..++|+|||+.|+.++.|..             |++|++.++.    ++.....+.
T Consensus       148 ~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~  226 (695)
T 2bkl_A          148 VLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP  226 (695)
T ss_dssp             EEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred             EEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence            378899 6666430 0011122  68999999999999988776             9999998876    333333455


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGG----TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK  133 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg----~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~  133 (359)
                      ..+..+.|||||++|+.++.++    .|.+|+..++. ...+..+...+....| ++|.+++++.   .++.|.+||+.+
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred             EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence            6788999999999888877665    67777765554 4555566666777777 5666444443   258999999987


Q ss_pred             cee---eEecc----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          134 YEV---LQTLP----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       134 ~~~---~~~~~----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +..   ...+.    ..+..++|+.+. +++...++..+||.+.........+..+   ....+..++++|++..++..
T Consensus       305 ~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~~~~v~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          305 PARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP---GVGAASNLMGLEDLDDAYYV  380 (695)
T ss_dssp             CSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCS---SSSEECCCBSCTTCSEEEEE
T ss_pred             CCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC---CCeEEEEeecCCCCCEEEEE
Confidence            642   22221    236778888444 5566678877777543222333333322   12367788889988776643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=9.8e-11  Score=106.99  Aligned_cols=208  Identities=9%  Similarity=-0.042  Sum_probs=134.0

Q ss_pred             eEEEeCC-CcEEEEeccCCCeEEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEE---ec-CCCCeEEEEEcCCCCE
Q 041916            2 PYIYNRD-GTELHCLKEHGAVLKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNF---RT-GLGRTDVMRVNPFNGV   74 (359)
Q Consensus         2 v~iwd~~-g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~sp~~~~   74 (359)
                      |++||.. +.....+.....+. ++|+|++..|++++.++  .|.+|+...+.....+   .. ....+++++++|++..
T Consensus       154 I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~  232 (409)
T 3hrp_A          154 VRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW  232 (409)
T ss_dssp             EEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE
T ss_pred             EEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe
Confidence            6788844 44444333332236 99999999998888765  8999998766544444   12 4466789999995555


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEE----EeccCCCe--EEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--c----
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIK----MLCHQGPV--SALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--P----  141 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~----~~~h~~~v--~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~----  141 (359)
                      |+.+..++.|..||+.++.....    ..++.+..  ..++|+|+ +.++++-..++.|+.||.... .....  .    
T Consensus       233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g  311 (409)
T 3hrp_A          233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKT  311 (409)
T ss_dssp             EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCS
T ss_pred             EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCC
Confidence            55577789999999987653222    11222222  38999995 555555567889999997643 11111  1    


Q ss_pred             -----------CCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCCCccceeecccCC-----------CCcceEEEEEee
Q 041916          142 -----------GHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMV-----------KGYQIGKVSFRP  196 (359)
Q Consensus       142 -----------~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p  196 (359)
                                 ..+..++++|+| ++++.  .++.|+.|++.++  .+..+.++...           .-.....++++|
T Consensus       312 ~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          312 VQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             CBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             cCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence                       236889999999 66555  4679999996554  23334333100           012578999999


Q ss_pred             CCCEEEEEcCCCeEEEE
Q 041916          197 YEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       197 ~~~~l~~~~~dg~~~i~  213 (359)
                      ++.++++...++.++.+
T Consensus       390 ~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             SSEEEEEESTTCEEEEE
T ss_pred             CCCEEEEECCCCeEEEE
Confidence            98766666555554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.37  E-value=5.1e-10  Score=102.26  Aligned_cols=190  Identities=12%  Similarity=0.007  Sum_probs=132.3

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEE
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWKPTTAAPLIK   97 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd~~~~~~~~~   97 (359)
                      .+..|+|+|++.++++...++.|++||..++......... .... ++|+|++..|+++..++  .|.+|+...+.....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            3589999999998887777899999999888766555543 3344 99999999988888766  799999876654444


Q ss_pred             E----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe----cc---CC-ce-eEEEcCC-c-eEEEE-cCC
Q 041916           98 M----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT----LP---GH-AK-TLDFSQK-G-LLAVG-TGS  161 (359)
Q Consensus        98 ~----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~---~~-i~-~~~~s~~-g-l~~~~-~d~  161 (359)
                      +    ......+.+++++|++..|+++..++.|..||..++.....    ..   +. .. .++|+|+ + ++++. ..+
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            3    21445678899999655666677789999999987653222    11   11 23 9999995 5 55554 467


Q ss_pred             cEEEEcCCCCCCccceeecccCC-----------CCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMV-----------KGYQIGKVSFRPYEDVLGIGH-SMGWSSILV  214 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~  214 (359)
                      .|..|+....   ...+.++...           .-.....++|+|+|.++++-+ .++.+..|.
T Consensus       290 ~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          290 SVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            8999985322   2333332100           012478999999999777777 677666665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=1.2e-09  Score=94.75  Aligned_cols=205  Identities=8%  Similarity=-0.009  Sum_probs=139.9

Q ss_pred             eEEEeCCCcEEE-EeccC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELH-CLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~-~l~~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |.+||..+.... .+..+ ..+.++++++++.++++...++.|..||.. ++.. .+.  .....+.++++.+++.++++
T Consensus        43 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~  120 (300)
T 2qc5_A           43 ISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFT  120 (300)
T ss_dssp             EEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEE
Confidence            566774454432 22222 345999999999988877668899999988 6643 332  23467899999999998888


Q ss_pred             EeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-cc---CCceeEEEcCC
Q 041916           78 GHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-LP---GHAKTLDFSQK  152 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~---~~i~~~~~s~~  152 (359)
                      ...++.|..||.. ++.... +......+.+++++++|+++++...++.|..||. ++..... .+   ..+..++++++
T Consensus       121 ~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          121 QLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             ccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCC
Confidence            7778899999987 544322 2223456899999999997766666789999998 5544332 22   35789999999


Q ss_pred             c-eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          153 G-LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       153 g-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      | ++++.. .+.|.+||. ++ .... +....  ....+.+++++++|.++++...++.+..+..
T Consensus       199 g~l~v~~~~~~~i~~~~~-~g-~~~~-~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          199 GALWFVEIMGNKIGRITT-TG-EISE-YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TC-CEEE-EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCEEEEccCCCEEEEEcC-CC-cEEE-EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            9 666664 568999996 43 2222 21111  2236889999999987776666666665554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=4e-11  Score=107.68  Aligned_cols=124  Identities=9%  Similarity=-0.049  Sum_probs=102.5

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      ..++.++|  |+.+|+++ .++.|++||+.+.........|..++.++.+.+..  +++++.||.|.+||+.++....  
T Consensus        88 p~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A           88 PDVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             TTEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE--
T ss_pred             CCeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc--
Confidence            33899999  89999998 88999999998776666677777888888877653  8889999999999999776543  


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEec------------cCCceeEEEcCCc
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTL------------PGHAKTLDFSQKG  153 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~------------~~~i~~~~~s~~g  153 (359)
                        +...|+|++|+|+|  ++.|..||++++|+...+..  ..++            ..+|.++.|.+++
T Consensus       161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence              34579999999999  78899999999999988774  4444            2358999999999

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=8.3e-11  Score=115.85  Aligned_cols=196  Identities=14%  Similarity=-0.000  Sum_probs=127.0

Q ss_pred             eEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCe--------------EEEEECCCCeE--EEEEe--cCCC
Q 041916            2 PYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQ--------------LRYQDVTMGEI--VGNFR--TGLG   61 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~--------------i~iwd~~~~~~--~~~~~--~~~~   61 (359)
                      |++|| .+|+.+.. ..+.. ...++|+|| +.|+.++.++.              |++|++.++..  ...+.  .+..
T Consensus       191 i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~  268 (741)
T 1yr2_A          191 VKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK  268 (741)
T ss_dssp             EEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             EEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence            78999 67776543 11111 257899999 98888876654              89999987752  22233  2333


Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 041916           62 RTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKE----CKIKIWD  130 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----~~i~iwd  130 (359)
                      .+..+.|||||++|+..+.++     .|.+||+.++  .+...+..+...+.... +|+|..|+..+.+    +.|.+||
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence            588999999999888877544     8999999876  42555665665555554 4899998887753    4599999


Q ss_pred             cCCc--eeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          131 LRKY--EVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       131 ~~~~--~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      +.++  .....+   ...+..++|+.+. +++...++..+||...........+..+   ....+..+.++|++..|+.
T Consensus       348 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          348 LSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP---GIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             CSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCS---SSCEEEEEECCBTCSCEEE
T ss_pred             CCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCC---CCeEEEEeecCCCCCEEEE
Confidence            9874  222222   2335677787444 5556677766666432222333333322   1236888999999886653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.32  E-value=3.7e-10  Score=98.88  Aligned_cols=195  Identities=9%  Similarity=-0.047  Sum_probs=128.0

Q ss_pred             cCCCeEEEEEecCCCEEEE-------EecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916           17 EHGAVLKLQFLRNHFLLAS-------INKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPF-NGVVSLGHSGGTV   84 (359)
Q Consensus        17 ~h~~~~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~-~~~l~sg~~dg~v   84 (359)
                      +...+.+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ +.++++.. .+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            3444589999999988877       5678899999988887543221    13456899999999 66555544 4479


Q ss_pred             EEEeCCCCcceEE-Eec----cCCCeEEEEEcCCCCEEEEEeCC---------------CeEEEEEcCCceeeEec--cC
Q 041916           85 TMWKPTTAAPLIK-MLC----HQGPVSALAFHPNGHLMATSGKE---------------CKIKIWDLRKYEVLQTL--PG  142 (359)
Q Consensus        85 ~lwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~--~~  142 (359)
                      .+||.. ++.... ...    ....+.+++++|+|+++++...+               +.|..||.. ++.....  ..
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~  172 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ  172 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence            999988 654322 111    12347899999999887776654               578888776 5443322  23


Q ss_pred             CceeEEEc----CCc--eEEEE-cCCcEEEEcCCCCCCc--cceeecccCCCC-cceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          143 HAKTLDFS----QKG--LLAVG-TGSFVQILGDFSGSHN--YSRYMGHSMVKG-YQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       143 ~i~~~~~s----~~g--l~~~~-~d~~i~i~d~~~~~~~--~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      .+..++|+    |+|  ++++. .++.|.+||+......  ...+..... .. ..+..++++++|.++++...++.+.+
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            56889999    998  44554 4689999986421111  111111111 11 25788999999988777766666666


Q ss_pred             EEc
Q 041916          213 LVP  215 (359)
Q Consensus       213 ~~~  215 (359)
                      |.+
T Consensus       252 ~d~  254 (314)
T 1pjx_A          252 FGP  254 (314)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.32  E-value=1.3e-10  Score=104.00  Aligned_cols=205  Identities=5%  Similarity=-0.119  Sum_probs=133.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCCe
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGRT   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v   63 (359)
                      |.++| .+++.+.++.....+ .+.|+||++++++++          .++.|.+||+.+++.+..+..+       ....
T Consensus        48 vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           48 NWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             EEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            67889 889999999876667 899999999888876          3689999999999999998754       1246


Q ss_pred             EEEEEcCCCCEEEEEeC--CCeEEE--EeCCCCcceEEEec---------c---------CCCeEEEE------------
Q 041916           64 DVMRVNPFNGVVSLGHS--GGTVTM--WKPTTAAPLIKMLC---------H---------QGPVSALA------------  109 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~--dg~v~l--wd~~~~~~~~~~~~---------h---------~~~v~~i~------------  109 (359)
                      ..++++|||++++++..  +..|.+  +|+.+   +..+..         +         .+.+..+.            
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            78999999999888874  467888  98865   222210         0         00000010            


Q ss_pred             --------------EcCCCCEEEEEeCCCeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--eEEEE
Q 041916          110 --------------FHPNGHLMATSGKECKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       110 --------------~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l~~~~  158 (359)
                                    ..+++..++..+. +.|.+.|+.+..  .+..+             +.....++++|++  ++++.
T Consensus       204 ~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~  282 (368)
T 1mda_H          204 AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             EEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence                          0233334444444 677777775432  22222             1122337899998  55433


Q ss_pred             c---------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE-EEEEc-CCCeEEEEEcCC
Q 041916          159 T---------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV-LGIGH-SMGWSSILVPGS  217 (359)
Q Consensus       159 ~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~-~dg~~~i~~~~~  217 (359)
                      .         ++.+.++|+.+. +.+..+....     ....++|+|+|+. +++.. .++.+.++...+
T Consensus       283 ~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          283 VEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             ccccCcccccCCCEEEEECCCC-eEEEEEECCC-----CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            2         235669998776 4444444332     5889999999984 44444 467677766543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=4.5e-10  Score=100.51  Aligned_cols=191  Identities=9%  Similarity=-0.012  Sum_probs=131.7

Q ss_pred             EEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 041916           24 LQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWK   88 (359)
Q Consensus        24 l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd   88 (359)
                      ....|++..+++...     ++.|.++|..+++.+..+.....+ . ++++|||+.+++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445688888877765     679999999999999999877666 4 99999999877765          367899999


Q ss_pred             CCCCcceEEEeccC-------CCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEeccCCceeEEEcCCc---eEE
Q 041916           89 PTTAAPLIKMLCHQ-------GPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLA  156 (359)
Q Consensus        89 ~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g---l~~  156 (359)
                      +.+.+.+..+....       ..-..++|+|||+++++++.  ++.|.++|+.+++.+.+++-+- +..+.|.|   +++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-CYHIFPTAPDTFFM  194 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEEEEETTEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-cceeecCCCceeEE
Confidence            99999888875322       13457999999999998874  6899999999999988884321 22233544   778


Q ss_pred             EEcCCcEEEEcCCCCCCccceeecccCCCCcce-EEEEEe-eCCCEEEEEcCCCeEEEEEcCCC
Q 041916          157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI-GKVSFR-PYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      .+.||.+.+.++............+-.....++ ....|. ++|+++. .+.+|.+.++...+.
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG  257 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence            888999999987653233221111100001122 224664 5665444 445676666665433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.28  E-value=1.6e-09  Score=93.86  Aligned_cols=188  Identities=8%  Similarity=-0.003  Sum_probs=134.9

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG-NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      ..+.+++++++|.+.++...++.|.+||.. ++... .+......+.++++.+++.++++...++.|..||.. +.. ..
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~   96 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TE   96 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EE
Confidence            345999999999988877778999999988 65443 222334678999999999988877778899999987 543 33


Q ss_pred             Ee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-ecc---CCceeEEEcCCc-eEEEEc-CCcEEEEcCC
Q 041916           98 ML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-TLP---GHAKTLDFSQKG-LLAVGT-GSFVQILGDF  169 (359)
Q Consensus        98 ~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~---~~i~~~~~s~~g-l~~~~~-d~~i~i~d~~  169 (359)
                      +.  .....+.+++++++|.++++...++.|..||.. ++... .+.   ..+.+++++++| ++++.. ++.|..||. 
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-  174 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-  174 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence            32  234568999999999988877778899999987 55432 222   357899999999 666654 678999996 


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ++ ... .+... . ....+.++++++++.++++....+.+.++..
T Consensus       175 ~g-~~~-~~~~~-~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          175 TG-KLE-EYPLP-T-NAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             TC-CEE-EEECS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             CC-cEE-EeeCC-C-CCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            44 222 22211 1 2236889999999987777666665555554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.26  E-value=1e-09  Score=93.23  Aligned_cols=198  Identities=8%  Similarity=0.048  Sum_probs=133.0

Q ss_pred             CcEEEEeccCCC--eEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCe
Q 041916            9 GTELHCLKEHGA--VLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGGT   83 (359)
Q Consensus         9 g~~~~~l~~h~~--~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg~   83 (359)
                      .+.+.++.....  +..++|+|++.++++.+.  ++.|.++|+.+++.+..+..... ....+++.. +.+.++.-.++.
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            345666754433  389999998765555543  67999999999999988764322 233555553 345555567899


Q ss_pred             EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----C---CceeEEEcCCc-e
Q 041916           84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----G---HAKTLDFSQKG-L  154 (359)
Q Consensus        84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~---~i~~~~~s~~g-l  154 (359)
                      +.++|..+.+.+.++......  ...+++||..++++..++.|.++|..+.+.+..+.     .   .++.+.|. +| +
T Consensus        88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l  164 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV  164 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence            999999999888888633111  23456688888877788999999999988877762     1   25678888 67 6


Q ss_pred             EEEE-cCCcEEEEcCCCCCCccceeeccc---------CCCCcceEEEEEeeCCCEEE-EEcCCCeEE
Q 041916          155 LAVG-TGSFVQILGDFSGSHNYSRYMGHS---------MVKGYQIGKVSFRPYEDVLG-IGHSMGWSS  211 (359)
Q Consensus       155 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~p~~~~l~-~~~~dg~~~  211 (359)
                      ++.. .++.|.+.|+.++ .....+....         .......+.++|+|+++.++ ++...+.+.
T Consensus       165 yvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             EEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             EEecCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            6655 4689999998877 4444443210         00123568999999987443 333344333

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.26  E-value=3.9e-09  Score=91.97  Aligned_cols=193  Identities=10%  Similarity=-0.022  Sum_probs=121.8

Q ss_pred             ccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916           16 KEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        16 ~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~   93 (359)
                      ..+... -+..|+|+ +.++++...++.|..||..++.. ..+. ....+.+++++|+|.++++ . ++.|.+||+.+++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            333344 89999996 45666666789999999988765 3333 3467999999999996554 3 5679999998775


Q ss_pred             ceEEEec----cCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--e
Q 041916           94 PLIKMLC----HQGPVSALAFHPNGHLMATSGK-----------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--L  154 (359)
Q Consensus        94 ~~~~~~~----h~~~v~~i~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l  154 (359)
                      .......    ....+++++++|+|+++++...           .+.|..+|.. +......  ......++|+|++  +
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence            4332221    1234789999999997665432           1344444443 3332222  2346889999999  4


Q ss_pred             EEEE-cCCcEEEEcCC--CCCCcc--ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          155 LAVG-TGSFVQILGDF--SGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       155 ~~~~-~d~~i~i~d~~--~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +++. .++.|.+|++.  ++ ...  ..+..... ....+..++++++|.+.++....+.+..|.+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             EEecCCCCcEEEEeccCCCC-cccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            4444 46889999853  33 211  11211110 1125788999999987766666665555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.25  E-value=3.7e-09  Score=95.25  Aligned_cols=185  Identities=9%  Similarity=-0.088  Sum_probs=126.2

Q ss_pred             EEecCCCEEEEEec--CC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 041916           25 QFLRNHFLLASINK--FG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKP   89 (359)
Q Consensus        25 ~~s~~~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~   89 (359)
                      ...|++.+++++..  ..   .|.++|..+++.+..+.....+  .++++|||+.++++.          .++.|.+||+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34467777777653  22   8899999999998888765544  999999999988875          3678999999


Q ss_pred             CCCcceEEEecc-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEe-ccCCceeEEEcCCc---eEE
Q 041916           90 TTAAPLIKMLCH-------QGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQT-LPGHAKTLDFSQKG---LLA  156 (359)
Q Consensus        90 ~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~i~~~~~s~~g---l~~  156 (359)
                      .+.+.+..+...       ...-..++|+|||++|++++.  ++.|.++| .+++.+.. ++.+ .++.+.|++   +++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~  182 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYL  182 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEE
Confidence            988877766432       122457999999999999874  47899999 99998888 6432 235555665   677


Q ss_pred             EEcCCcEEEEcCCCCCCccceeec---ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          157 VGTGSFVQILGDFSGSHNYSRYMG---HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      .+.||.+.++|. ++ ........   ... ...-.....|.+++..++..+..+.+.++...
T Consensus       183 ~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~  242 (373)
T 2mad_H          183 LCAQGGLAKTDH-AG-GAAGAGLVGAMLTA-AQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             EcCCCCEEEEEC-CC-cEEEEEeccccccC-CcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence            788999999997 55 23211110   000 11112345677776655544456655555543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.24  E-value=2.1e-09  Score=97.03  Aligned_cols=204  Identities=11%  Similarity=0.018  Sum_probs=135.1

Q ss_pred             CeEEEe-CCC----cEEEEec--------cCCCeEEEEEecCCCEEEEEecC------CeEEEEECCCCeEEEEEecCCC
Q 041916            1 YPYIYN-RDG----TELHCLK--------EHGAVLKLQFLRNHFLLASINKF------GQLRYQDVTMGEIVGNFRTGLG   61 (359)
Q Consensus         1 ~v~iwd-~~g----~~~~~l~--------~h~~~~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~   61 (359)
                      .|+|+| .+.    +.+.++.        +-..+..+..+|+| +++++..+      |.|.++|..+++.+..+.....
T Consensus       107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~  185 (462)
T 2ece_A          107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG  185 (462)
T ss_dssp             CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT
T ss_pred             eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC
Confidence            478888 444    5566663        21234778899999 66666555      7899999999999998873322


Q ss_pred             C---eEEEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCcceEEEecc-C-CCeEEEEE--cCCCC
Q 041916           62 R---TDVMRVNPFNGVVSLGH-------------------SGGTVTMWKPTTAAPLIKMLCH-Q-GPVSALAF--HPNGH  115 (359)
Q Consensus        62 ~---v~~~~~sp~~~~l~sg~-------------------~dg~v~lwd~~~~~~~~~~~~h-~-~~v~~i~~--~~~~~  115 (359)
                      +   -..+.|+|+++.+++..                   .+..|.+||+.+++.+.++... . .....|.|  +|+++
T Consensus       186 ~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~  265 (462)
T 2ece_A          186 DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL  265 (462)
T ss_dssp             TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC
T ss_pred             CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC
Confidence            2   34588899999888874                   3689999999998877777642 1 23345656  99999


Q ss_pred             EEEEEe------CCCeEEEEEcCCce--eeEe-----------c----------cCCceeEEEcCCc--eEEEEc-CCcE
Q 041916          116 LMATSG------KECKIKIWDLRKYE--VLQT-----------L----------PGHAKTLDFSQKG--LLAVGT-GSFV  163 (359)
Q Consensus       116 ~l~~~~------~d~~i~iwd~~~~~--~~~~-----------~----------~~~i~~~~~s~~g--l~~~~~-d~~i  163 (359)
                      ++++++      .+++|.+|....+.  ....           +          ...+..|.+||||  ++++.. .+.|
T Consensus       266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~V  345 (462)
T 2ece_A          266 MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEV  345 (462)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEE
T ss_pred             EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEE
Confidence            988777      45688776554332  1111           1          1346889999999  555553 5899


Q ss_pred             EEEcCCCCCC--ccceeeccc---------C-CCCcceEEEEEeeCCCEEEEEc
Q 041916          164 QILGDFSGSH--NYSRYMGHS---------M-VKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       164 ~i~d~~~~~~--~~~~~~~~~---------~-~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      .+||+.....  .+..+....         + .-......++++|+|++|+++.
T Consensus       346 avfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          346 RQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999753321  111111110         0 0001257799999999988877

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=2.1e-12  Score=116.48  Aligned_cols=178  Identities=12%  Similarity=-0.042  Sum_probs=99.3

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC-CeE-
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-PVS-  106 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-~v~-  106 (359)
                      ++..+++++.||.|..||..+|+.+..+..  +.+.+..+.+++..+++++.||.|+.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999998886  5565555667777888888999999999999988776653311 110 


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916          107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV  184 (359)
Q Consensus       107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  184 (359)
                      +..+. ++..+++++.|+.|+.||..+|+.+..+...- ...++|++  +++++.++.|..||..++. ....+...   
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~~~---  159 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRE-LRWNATYF---  159 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSS-CCCEEEEE---
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCC-EEEeEecc---
Confidence            11111 34567888889999999999999887773321 23455665  7778889999999987773 33332221   


Q ss_pred             CCcceEEEEEeeCC---CEEEEEcCCCeEEEEEcCC
Q 041916          185 KGYQIGKVSFRPYE---DVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       185 ~~~~v~~~~~~p~~---~~l~~~~~dg~~~i~~~~~  217 (359)
                         .....+++++.   ..+++++.+|.+..|...+
T Consensus       160 ---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          160 ---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             ---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             ---cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence               11222233322   4566677777666655443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=3.2e-09  Score=94.57  Aligned_cols=183  Identities=8%  Similarity=-0.018  Sum_probs=121.3

Q ss_pred             CeEEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCE-EEEEe---CCCeE
Q 041916           20 AVLKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFNGV-VSLGH---SGGTV   84 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~-l~sg~---~dg~v   84 (359)
                      .+.+++|+++++++++-..     ++.|.+||+.+++.+..+..+      ...++.++++|++.. +++..   .++.|
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i  147 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL  147 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred             EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence            3599999999886665433     579999999999977776532      235689999986544 45544   67899


Q ss_pred             EEEeCCCCcceEEEeccC-----------------------------CCeEEEEEcCCCCEEEEEeCCC-eEEEEEcC--
Q 041916           85 TMWKPTTAAPLIKMLCHQ-----------------------------GPVSALAFHPNGHLMATSGKEC-KIKIWDLR--  132 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h~-----------------------------~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~--  132 (359)
                      .+||+.+++....+..|.                             ..+..|+|+|+|+.|+++..++ .|..++..  
T Consensus       148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~  227 (343)
T 2qe8_A          148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL  227 (343)
T ss_dssp             EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred             EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence            999998776554443321                             2358899999999998887665 55555532  


Q ss_pred             -Cce-----e---eEec--cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          133 -KYE-----V---LQTL--PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       133 -~~~-----~---~~~~--~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                       .+.     .   +..+  .+.+..++++++| ++++. .++.|.+||..++ . ...+....  ....+.+++|.+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~-~~~~~~~~--~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-A-YKLLVTDE--KLSWTDSFNFGSDGY  303 (343)
T ss_dssp             TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-E-EEEEEECG--GGSCEEEEEECTTSC
T ss_pred             cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-C-EEEEEECC--ceecCCeeEECCCCc
Confidence             110     0   1111  2356789999999 55554 5689999996344 2 22222211  122588999999887


Q ss_pred             EEEEEcC
Q 041916          200 VLGIGHS  206 (359)
Q Consensus       200 ~l~~~~~  206 (359)
                      ++++.+.
T Consensus       304 l~v~~~~  310 (343)
T 2qe8_A          304 LYFDCNQ  310 (343)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCc
Confidence            6655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.22  E-value=1.7e-09  Score=94.63  Aligned_cols=183  Identities=11%  Similarity=-0.013  Sum_probs=120.4

Q ss_pred             EEEeccCCC-eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           12 LHCLKEHGA-VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        12 ~~~l~~h~~-~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      +..+..+.. ..+..|+|+++ ++++...++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            334444434 48999999998 6667777899999998 455 4555566678899999999998777767788999998


Q ss_pred             CCCcceEEEecc-----CCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEEcCCceeeEec-cCCcee
Q 041916           90 TTAAPLIKMLCH-----QGPVSALAFHPNGHLMAT----SGK-------------ECKIKIWDLRKYEVLQTL-PGHAKT  146 (359)
Q Consensus        90 ~~~~~~~~~~~h-----~~~v~~i~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~-~~~i~~  146 (359)
                      . +.. ..+..+     ...+++++++|+|+++++    |..             .+.|..||..+++..... ......
T Consensus       115 ~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g  192 (305)
T 3dr2_A          115 D-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG  192 (305)
T ss_dssp             T-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred             C-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence            6 543 222211     134678999999998886    332             256888888666543222 234578


Q ss_pred             EEEcCCc--eEEEEcC------CcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          147 LDFSQKG--LLAVGTG------SFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      ++|+|+|  ++++...      +.|.+|++..+. ..  ..+...   .......++++++|.+.+
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~---~~~~pdgi~~d~~G~lwv  254 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV---PDGLPDGFCVDRGGWLWS  254 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC---SSSCCCSEEECTTSCEEE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC---CCCCCCeEEECCCCCEEE
Confidence            9999999  5555554      689999865432 11  111110   112345678888887433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.22  E-value=2e-12  Score=116.59  Aligned_cols=164  Identities=14%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eE-EEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TD-VMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~-~~~~sp~~~~l~sg   78 (359)
                      |+.|| .+|+++..+.. ..+.+..+.+++..+++++.||.|+.||..+|+.+..+..+... +. +..+. .+..+++|
T Consensus        21 v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g   98 (369)
T 2hz6_A           21 LHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMG   98 (369)
T ss_dssp             EEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCC
T ss_pred             EEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEE
Confidence            78899 89999988877 44455556667777888889999999999999887766543211 10 01111 34567788


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCceeEEEcCC----c
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKTLDFSQK----G  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~----g  153 (359)
                      +.||.|..||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..+. ......+++++    +
T Consensus        99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~  174 (369)
T 2hz6_A           99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKM  174 (369)
T ss_dssp             EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCC
T ss_pred             eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccc
Confidence            899999999999999887776543    24556788899999999999999999998766552 12233344442    5


Q ss_pred             -eEEEEcCCcEEEEcCCCC
Q 041916          154 -LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~  171 (359)
                       +++++.+|.|..||..++
T Consensus       175 ~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          175 SHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             CEEEEETSCEEEEECTTTC
T ss_pred             eEEEECCCCEEEEEECCCC
Confidence             788889999999998777

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.18  E-value=1.1e-08  Score=90.36  Aligned_cols=186  Identities=9%  Similarity=-0.081  Sum_probs=119.5

Q ss_pred             EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           22 LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        22 ~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      .+..|+|++ .++++...++.|..||..++... .+. ....+.+++|+|+|.++++. .+ .|.+||+.+++.......
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence            788999974 55666667889999999887643 333 34679999999999877754 44 499999987764322211


Q ss_pred             ---c-CCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEE
Q 041916          101 ---H-QGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQI  165 (359)
Q Consensus       101 ---h-~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i  165 (359)
                         . ...+++++++|+|+++++...      .+.|..+|  +++.....  ......++|+|+|  ++.+. .++.|.+
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence               1 135889999999997665542      24666666  45433222  2346789999999  44444 4589999


Q ss_pred             EcCC--CC-CCc-cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          166 LGDF--SG-SHN-YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       166 ~d~~--~~-~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      |++.  ++ ... ...+..... ....+..++++++|.++++...++.+..|.
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             EEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence            9964  33 111 112211110 122567889999987766655555444444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=2.4e-09  Score=95.37  Aligned_cols=192  Identities=9%  Similarity=0.000  Sum_probs=125.5

Q ss_pred             CCeEEEEEecCCCEEEEEe--cCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 041916           19 GAVLKLQFLRNHFLLASIN--KFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPFNGVVSLGHS-----GGTV   84 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~sg~~-----dg~v   84 (359)
                      ..+..++++|+|+++++..  .++.++||.+.+++. ..+.       .+...+.+++++|+++++++...     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            4569999999999988864  234245555445653 3332       24467899999999887776544     5789


Q ss_pred             EEEeCCCCcceEEEecc------CCCeEEEEEcCCCCEEE-EEe---CCCeEEEEEcCCceeeEecc-------------
Q 041916           85 TMWKPTTAAPLIKMLCH------QGPVSALAFHPNGHLMA-TSG---KECKIKIWDLRKYEVLQTLP-------------  141 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~-~~~---~d~~i~iwd~~~~~~~~~~~-------------  141 (359)
                      .+||+.+++.+..+...      ...+..++++|++..++ +..   .++.|.+||+.+++....+.             
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988876666432      23468999998655554 444   57899999998776544331             


Q ss_pred             -------------------CCceeEEEcCCc--eEEEEcCC-cEEEEcCCC--CCCc-----cc--eeecccCCCCcceE
Q 041916          142 -------------------GHAKTLDFSQKG--LLAVGTGS-FVQILGDFS--GSHN-----YS--RYMGHSMVKGYQIG  190 (359)
Q Consensus       142 -------------------~~i~~~~~s~~g--l~~~~~d~-~i~i~d~~~--~~~~-----~~--~~~~~~~~~~~~v~  190 (359)
                                         ..+..|+|+|+|  ++++...+ .|..++...  ....     ..  ...++..    ...
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g----~pd  251 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP----ICD  251 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC----SCS
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC----CCc
Confidence                               124779999999  55665554 566555211  1000     00  1112211    456


Q ss_pred             EEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          191 KVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       191 ~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      .++++++|.++++...++.+.+|.+
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             eEEECCCCCEEEEccCCCeEEEEEC
Confidence            7899999988888877777777775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=4.2e-09  Score=95.11  Aligned_cols=186  Identities=14%  Similarity=0.128  Sum_probs=121.7

Q ss_pred             cCCCEEEE-EecCCeEEEEECCCC----eEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeC
Q 041916           28 RNHFLLAS-INKFGQLRYQDVTMG----EIVGNFR-------TGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKP   89 (359)
Q Consensus        28 ~~~~~l~s-~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~   89 (359)
                      +++++|+. +..++.|.++|+.+.    +....+.       ......+.+..+|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            67766654 556889999999765    6666663       122356778889999 77766555      78999999


Q ss_pred             CCCcceEEEeccCC---CeEEEEEcCCCCEEEEEe-------------------CCCeEEEEEcCCceeeEeccC-----
Q 041916           90 TTAAPLIKMLCHQG---PVSALAFHPNGHLMATSG-------------------KECKIKIWDLRKYEVLQTLPG-----  142 (359)
Q Consensus        90 ~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~-----  142 (359)
                      .+.+.+.++....+   .-..+.|+|+++.|++..                   .+.+|.+||+.+++.+.++.-     
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            99999888863222   234688999999998885                   368999999999888877732     


Q ss_pred             CceeEEE--cCCc---eEEEE-----cCCcEEEEcCCCCC-Ccccee--ecc----cC---C-----CCcceEEEEEeeC
Q 041916          143 HAKTLDF--SQKG---LLAVG-----TGSFVQILGDFSGS-HNYSRY--MGH----SM---V-----KGYQIGKVSFRPY  197 (359)
Q Consensus       143 ~i~~~~~--s~~g---l~~~~-----~d~~i~i~d~~~~~-~~~~~~--~~~----~~---~-----~~~~v~~~~~~p~  197 (359)
                      ....+.|  +|+|   ++++.     .+++|.+|....+. ...+.+  ...    ..   .     .+.....+.++||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            2345555  9999   44444     56788776532210 000000  000    00   0     0125788999999


Q ss_pred             CCEEEEEcC-CCeEEEEE
Q 041916          198 EDVLGIGHS-MGWSSILV  214 (359)
Q Consensus       198 ~~~l~~~~~-dg~~~i~~  214 (359)
                      |++|.++.. .+.+.++.
T Consensus       332 GrfLYVSnrg~d~Vavfd  349 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYD  349 (462)
T ss_dssp             SCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEE
Confidence            998766554 33444444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.17  E-value=9.7e-09  Score=86.22  Aligned_cols=186  Identities=11%  Similarity=0.125  Sum_probs=126.8

Q ss_pred             EEEEeccCCCe--EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEEecCCCCe-EEEEEcCCCCEEEEEeCCCeEE
Q 041916           11 ELHCLKEHGAV--LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNFRTGLGRT-DVMRVNPFNGVVSLGHSGGTVT   85 (359)
Q Consensus        11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~sg~~dg~v~   85 (359)
                      .+.++.....+  ..+.|+ ++.++.+.+.+|  .|+++|+.+|+.+..+....... -.++... +.+.++...++.+.
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEE
Confidence            45566444444  889998 677777777766  99999999999998887543321 2344432 24444455689999


Q ss_pred             EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEE
Q 041916           86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLA  156 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~  156 (359)
                      +||..+.+.+.++....   ....+++|+..|+.+..++.|.++|..+.+.+..+.        ..++.+.|. +| +++
T Consensus       111 v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            99999999998887432   223344677777777778899999999988877761        123567787 66 666


Q ss_pred             EE-cCCcEEEEcCCCCCCccceeeccc--------CCCCcceEEEEEeeCCCEEEE
Q 041916          157 VG-TGSFVQILGDFSGSHNYSRYMGHS--------MVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       157 ~~-~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      .. .++.|.+.|..++ .....+....        .......+.|+|+|+++.|.+
T Consensus       187 n~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV  241 (262)
T 3nol_A          187 NVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV  241 (262)
T ss_dssp             EETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred             EEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence            66 4689999998777 4444333211        012335799999999875433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=1.2e-09  Score=106.78  Aligned_cols=182  Identities=12%  Similarity=0.034  Sum_probs=118.0

Q ss_pred             EEEEEecCCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-------------e
Q 041916           22 LKLQFLRNHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG-------------T   83 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-------------~   83 (359)
                      ..++|||||++||.+.     ....|++||+.+|+.+.... +......++|+ |++.|+.++.+.             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            7889999999888533     23579999999998654311 11113578899 999998888774             3


Q ss_pred             EEEEeCCCCcc--eEEEe--c-cCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCce-eeEec---cCCceeEEEc
Q 041916           84 VTMWKPTTAAP--LIKML--C-HQGPVSALAFHPNGHLMATSGK----ECKIKIWDLRKYE-VLQTL---PGHAKTLDFS  150 (359)
Q Consensus        84 v~lwd~~~~~~--~~~~~--~-h~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s  150 (359)
                      |++|++.++..  ...+.  . |...+.++.|+|||++|+....    +..|+++|+.++. ....+   ....... |+
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~  288 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD  288 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence            99999987653  22222  3 4456788999999998765432    2589999998763 23333   2223333 66


Q ss_pred             CCc--eEEEEc-C---CcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcC-CCeEEE
Q 041916          151 QKG--LLAVGT-G---SFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSI  212 (359)
Q Consensus       151 ~~g--l~~~~~-d---~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i  212 (359)
                      ++|  ++..+. +   +.|..+|+.++.. ....+..+..    .+.  .|+++++.|+.... +|...+
T Consensus       289 ~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          289 NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEE
Confidence            666  544443 2   5799999766532 1244555532    333  89999998776654 443333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.16  E-value=3.1e-09  Score=103.78  Aligned_cols=197  Identities=9%  Similarity=-0.002  Sum_probs=124.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCC-------------eEEEEECCCCe----EEEEEec-CC
Q 041916            1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFG-------------QLRYQDVTMGE----IVGNFRT-GL   60 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg-------------~i~iwd~~~~~----~~~~~~~-~~   60 (359)
                      +|+||| .+|+.+.. ..+.. ...++|+ |++.|+.++.+.             .|++|++.++.    ++..... |.
T Consensus       156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~  233 (693)
T 3iuj_A          156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH  233 (693)
T ss_dssp             EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC
T ss_pred             EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC
Confidence            378899 77776543 11111 2578999 999998887774             39999998764    2322233 44


Q ss_pred             CCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEe-CC---CeEEEEEc
Q 041916           61 GRTDVMRVNPFNGVVSLGHS----GGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSG-KE---CKIKIWDL  131 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~----dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d---~~i~iwd~  131 (359)
                      ..+..+.|+|||++|+....    +..|.+||+.++. ....+..+.+..... |+++|..|+..+ .+   +.|..+|+
T Consensus       234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~  312 (693)
T 3iuj_A          234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA  312 (693)
T ss_dssp             CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence            45788999999998765432    3589999998764 455666666666655 667776665544 33   68999999


Q ss_pred             CCcee--eEec---cCCceeEEEcCCc--eEEEE-cCC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          132 RKYEV--LQTL---PGHAKTLDFSQKG--LLAVG-TGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       132 ~~~~~--~~~~---~~~i~~~~~s~~g--l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      .++..  ...+   ...+.  .|++++  ++... .++  .|.+|++..+  ....+...   ....+..+.++|++..|
T Consensus       313 ~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p---~~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          313 ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREVALP---GLGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEECCS---SSSEEEECCCCTTCSCE
T ss_pred             CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEeecC---CCceEEeeecCCCCCEE
Confidence            87643  2233   22233  888887  54444 344  7899986533  22222211   11257777888888766


Q ss_pred             EEEcCC
Q 041916          202 GIGHSM  207 (359)
Q Consensus       202 ~~~~~d  207 (359)
                      +....+
T Consensus       386 ~~~~ss  391 (693)
T 3iuj_A          386 YFGFEN  391 (693)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            655433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=4.5e-09  Score=95.62  Aligned_cols=185  Identities=11%  Similarity=-0.040  Sum_probs=128.9

Q ss_pred             cCCCEEEEEec-C----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 041916           28 RNHFLLASINK-F----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKPTTA   92 (359)
Q Consensus        28 ~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~~~~   92 (359)
                      |++..++++.. +    +.|.++|+.+++.+..+.....+  .++++||++.++++.          .++.|.++|+.++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46666665554 2    69999999999999999877666  899999999887775          4678999999999


Q ss_pred             cceEEEecc-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEeccCCceeEEEcCCc---eEEEEcC
Q 041916           93 APLIKMLCH-------QGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTG  160 (359)
Q Consensus        93 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g---l~~~~~d  160 (359)
                      +.+..+...       ......++|+|||+++++++.  ++.|.++|+.+++.+..++-+- +....|+|   +++.+.|
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-CYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-ceeeccCCCcEEEEEcCC
Confidence            988777532       123457899999999999874  5799999999999988874221 23445555   6777888


Q ss_pred             CcEEEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          161 SFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      |.+.+.++.++ ....... ............+.|.+++..++..+..|.+.++...
T Consensus       239 G~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~  294 (426)
T 3c75_H          239 GSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT  294 (426)
T ss_dssp             SSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred             CCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence            88888887333 3221110 0000001112345678888877777777766666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.12  E-value=6.5e-09  Score=101.19  Aligned_cols=197  Identities=14%  Similarity=0.091  Sum_probs=132.5

Q ss_pred             eEEEe-CCCcEEEEeccC-------------------------------CCe-EEEEEecCCCEEEEEecCC--------
Q 041916            2 PYIYN-RDGTELHCLKEH-------------------------------GAV-LKLQFLRNHFLLASINKFG--------   40 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-------------------------------~~~-~~l~~s~~~~~l~s~~~dg--------   40 (359)
                      |+.|| .+|+++..+...                               ..+ ..++++|+..+++.++.++        
T Consensus       185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~  264 (689)
T 1yiq_A          185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR  264 (689)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence            67889 899988776521                               112 3688999888999888776        


Q ss_pred             -----------eEEEEECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCcceEE
Q 041916           41 -----------QLRYQDVTMGEIVGNFRT--GL-------GRTDVMRVNPFNG---VVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        41 -----------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                                 .|..+|..+|+.+..++.  |.       .++.......+|.   .++.++.+|.++++|..+++.+..
T Consensus       265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence                       399999999999988875  21       1222222223554   788899999999999999988743


Q ss_pred             EeccC-C--------------------------------------CeEEEEEcCCCCEEEEEeC----------------
Q 041916           98 MLCHQ-G--------------------------------------PVSALAFHPNGHLMATSGK----------------  122 (359)
Q Consensus        98 ~~~h~-~--------------------------------------~v~~i~~~~~~~~l~~~~~----------------  122 (359)
                      ..... .                                      .-..++|+|+..++++.+.                
T Consensus       345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  424 (689)
T 1yiq_A          345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN  424 (689)
T ss_dssp             EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred             ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence            32110 0                                      0113788998888777532                


Q ss_pred             -----------------------------CCeEEEEEcCCceeeEecc--CCceeEEEcCC-c-eEEEEcCCcEEEEcCC
Q 041916          123 -----------------------------ECKIKIWDLRKYEVLQTLP--GHAKTLDFSQK-G-LLAVGTGSFVQILGDF  169 (359)
Q Consensus       123 -----------------------------d~~i~iwd~~~~~~~~~~~--~~i~~~~~s~~-g-l~~~~~d~~i~i~d~~  169 (359)
                                                   +|.|..||+.+++.+..++  .+.....++.. + +++++.|+.|+.||..
T Consensus       425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence                                         3789999999999887773  33333344444 4 6777789999999988


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      ++ +.+..+.....   ..-.-+.|..+|+.++
T Consensus       505 tG-~~lw~~~~~~~---~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          505 TG-EKLWEQPAASG---VMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TC-CEEEEEECSSC---CCSCCEEEEETTEEEE
T ss_pred             CC-ccceeeeCCCC---cccCceEEEECCEEEE
Confidence            87 44444443321   1223466788887443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.09  E-value=1e-07  Score=79.32  Aligned_cols=184  Identities=15%  Similarity=0.138  Sum_probs=125.4

Q ss_pred             EEEEeccCCCe--EEEEEecCCCEEEEEecC--CeEEEEECCCCeEEEEEecCCCCe-EEEEEcCCCCEEEEEeCCCeEE
Q 041916           11 ELHCLKEHGAV--LKLQFLRNHFLLASINKF--GQLRYQDVTMGEIVGNFRTGLGRT-DVMRVNPFNGVVSLGHSGGTVT   85 (359)
Q Consensus        11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~sg~~dg~v~   85 (359)
                      .+.++.+....  ..+.|++ +.++.+.+.+  +.|+.+|+.+|+.+..+....... ..++... +.++.....++.+.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEE
Confidence            45666433333  6999987 5666666665  499999999999998887543321 2344432 34555566789999


Q ss_pred             EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEE
Q 041916           86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLA  156 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~  156 (359)
                      +||..+.+.+.++...... ..++  +++..|+++..++.|.++|..+.+.+..+.        ..++.+.|. +| +++
T Consensus        89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence            9999999999888743222 3444  567777777778999999999988877762        234667776 55 666


Q ss_pred             EE-cCCcEEEEcCCCCCCccceeecccC---------CCCcceEEEEEeeCCCEE
Q 041916          157 VG-TGSFVQILGDFSGSHNYSRYMGHSM---------VKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       157 ~~-~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~l  201 (359)
                      .. .++.|.+.|..++ .....+.....         ......+.|+|+|+++.|
T Consensus       165 nvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          165 NVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             EETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             EECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            66 4689999998877 44443332110         123467999999988743

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=4e-09  Score=98.50  Aligned_cols=202  Identities=8%  Similarity=-0.059  Sum_probs=137.4

Q ss_pred             eEEEe-CCCcEEE--EeccCCCeEEEEE-e-cCCCEEEEEe------------------cCCeEEEEECCCCeEEEEEec
Q 041916            2 PYIYN-RDGTELH--CLKEHGAVLKLQF-L-RNHFLLASIN------------------KFGQLRYQDVTMGEIVGNFRT   58 (359)
Q Consensus         2 v~iwd-~~g~~~~--~l~~h~~~~~l~~-s-~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~   58 (359)
                      |.+.| .+.++..  .+....++..+++ + |++.++++++                  .++.+.+.|..+.+.+.++.-
T Consensus       114 VavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V  193 (595)
T 1fwx_A          114 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV  193 (595)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe
Confidence            44566 5666655  4444455688888 5 9999988874                  346899999999999988875


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eEEEEeCCC--Ccc-eEE
Q 041916           59 GLGRTDVMRVNPFNGVVSLGHSGG--------------------------------------TVTMWKPTT--AAP-LIK   97 (359)
Q Consensus        59 ~~~~v~~~~~sp~~~~l~sg~~dg--------------------------------------~v~lwd~~~--~~~-~~~   97 (359)
                      .. ....++++|+|.++++.+.+.                                      .|.+.|..+  +.. +..
T Consensus       194 gg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~  272 (595)
T 1fwx_A          194 SG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY  272 (595)
T ss_dssp             SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE
T ss_pred             CC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE
Confidence            43 457788999999988887543                                      377777776  444 444


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------------eeEec--cCCceeEEEcCCc--eEEEEcC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYE------------VLQTL--PGHAKTLDFSQKG--LLAVGTG  160 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~------------~~~~~--~~~i~~~~~s~~g--l~~~~~d  160 (359)
                      +.... ...++.++|||+++++++ .+.+|.++|+.+.+            .+...  ......++|+|+|  +++.-.+
T Consensus       273 Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          273 IPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD  351 (595)
T ss_dssp             EEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred             EecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC
Confidence            44322 346799999999977766 57899999999753            23333  2357899999999  4445578


Q ss_pred             CcEEEEcCCCC---------CCccceeecccCCCC--cceEEEEEeeCCCEEEEEcC
Q 041916          161 SFVQILGDFSG---------SHNYSRYMGHSMVKG--YQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       161 ~~i~i~d~~~~---------~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~  206 (359)
                      +.|.+||+...         ...+..+..|-. ++  ..-.++.++|||++|+++..
T Consensus       352 sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          352 SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcEEEEEhhHhhhhhcccccceeEEEeecccc-cccceeccceEeCCCCCEEEEcCC
Confidence            99999997551         123333333311 00  01122345799999988653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=9.5e-09  Score=99.84  Aligned_cols=198  Identities=9%  Similarity=0.016  Sum_probs=136.9

Q ss_pred             eEEEe-CCCcEEEEeccCCC--------------------------------e-EEEEEecCCCEEEEEecCC-------
Q 041916            2 PYIYN-RDGTELHCLKEHGA--------------------------------V-LKLQFLRNHFLLASINKFG-------   40 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~--------------------------------~-~~l~~s~~~~~l~s~~~dg-------   40 (359)
                      |+.|| .+|+++..+.....                                + ..++++|++.+|+.++.++       
T Consensus       192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~  271 (677)
T 1kb0_A          192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKV  271 (677)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCC
Confidence            77899 89999877654211                                1 3578999988888877654       


Q ss_pred             ------------eEEEEECCCCeEEEEEecCC---------CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceE
Q 041916           41 ------------QLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        41 ------------~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                                  +|..+|..+|+.+..++...         .....+....+|   ..++.++.+|.|+++|..+++.+.
T Consensus       272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~  351 (677)
T 1kb0_A          272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (677)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             CCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence                        59999999999998877421         122233344467   688999999999999999999877


Q ss_pred             EEeccCC-----------Ce------------------------EEEEEcCCCCEEEEEeC-------------------
Q 041916           97 KMLCHQG-----------PV------------------------SALAFHPNGHLMATSGK-------------------  122 (359)
Q Consensus        97 ~~~~h~~-----------~v------------------------~~i~~~~~~~~l~~~~~-------------------  122 (359)
                      .+.....           ++                        ..++|+|++.++++...                   
T Consensus       352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~  431 (677)
T 1kb0_A          352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP  431 (677)
T ss_dssp             EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred             cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence            6542110           01                        15788998888877643                   


Q ss_pred             ------------------------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916          123 ------------------------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN  174 (359)
Q Consensus       123 ------------------------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~  174 (359)
                                              .+.|..||+.+++.+..+  ..++....++..+  +++++.+|.+++||..++ +.
T Consensus       432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~  510 (677)
T 1kb0_A          432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EK  510 (677)
T ss_dssp             TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CE
T ss_pred             cccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC-ce
Confidence                                    278999999999988777  3344454555554  666778999999998887 45


Q ss_pred             cceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916          175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGI  203 (359)
Q Consensus       175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  203 (359)
                      +..+.....   ..-.-+.|.++|+.+++
T Consensus       511 lw~~~~~~~---~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          511 LWEAPTGTG---VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEECSSC---CCSCCEEEEETTEEEEE
T ss_pred             eeeeeCCCC---cccCCEEEEeCCEEEEE
Confidence            444443321   12334567788865443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.08  E-value=1.1e-08  Score=90.14  Aligned_cols=197  Identities=12%  Similarity=0.040  Sum_probs=134.3

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS   80 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~   80 (359)
                      |+.||..|.....+..+... .++...+++. |..++.++.|..+|.. ++.+..+......+.++...+++.+++ ++ 
T Consensus       119 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t-  194 (330)
T 3hxj_A          119 LYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS-  194 (330)
T ss_dssp             EEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES-
T ss_pred             EEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee-
Confidence            56777447777666655554 6677777776 5557778999999998 888877776666777888877877555 44 


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEE
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLA  156 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~  156 (359)
                       +.|..|| .++..+..+......+.++.+.++|. |..++.++.|..+|. ++..+..+   ...+.++.+.++| +++
T Consensus       195 -~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v  270 (330)
T 3hxj_A          195 -DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF  270 (330)
T ss_dssp             -SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred             -CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE
Confidence             7799999 67777766665566788889988875 455667788888884 45555554   2234567777777 888


Q ss_pred             EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++.+|.|..+|. ++ .....+...    ...+.++...+++. |.+|+.+|.+.+.
T Consensus       271 ~t~~ggl~~~d~-~g-~~~~~~~~~----~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          271 GSYDGHLYAINP-DG-TEKWNFETG----SWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             ECTTCEEEEECT-TS-CEEEEEECS----SCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             ecCCCCEEEECC-CC-cEEEEEEcC----CccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            888889999994 44 333333222    22566677767765 4456666654443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=5.1e-08  Score=81.84  Aligned_cols=183  Identities=10%  Similarity=0.040  Sum_probs=126.8

Q ss_pred             EEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916           11 ELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPFNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~sg~~dg~v~lw   87 (359)
                      .+.++......  ..+.|+. +.++.+.+.+|.|+++|+.+|+.+..+ -.... -..+++.. +.++++...++.+.+|
T Consensus        45 Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             EEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            44556433334  7889984 677778888899999999999988877 33221 23355543 3555556678999999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEEEE
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLAVG  158 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~~~  158 (359)
                      |..+.+.+.++.... .-..++  +|+..|+.+..++.|.++|..+.+.+..+.        ..++.+.|. +| +++..
T Consensus       122 D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          122 SGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             ETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             ECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            999999998887432 223444  578888888788999999999998877762        134677777 66 66666


Q ss_pred             -cCCcEEEEcCCCCCCccceeecc---------cCCCCcceEEEEEeeCCCEE
Q 041916          159 -TGSFVQILGDFSGSHNYSRYMGH---------SMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       159 -~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~l  201 (359)
                       .++.|.+.|..++ .....+...         ........+.|+|+|+++.|
T Consensus       198 w~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          198 WHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             TTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             CCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence             4689999998777 444433221         01123467999999987643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=2.1e-08  Score=97.40  Aligned_cols=212  Identities=12%  Similarity=0.075  Sum_probs=143.2

Q ss_pred             eEEEe-CCCcEEEEeccC-C-----Ce-EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCCCC-----
Q 041916            2 PYIYN-RDGTELHCLKEH-G-----AV-LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGLGR-----   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-~-----~~-~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----   62 (359)
                      |+.+| .+|+++..+..+ .     .+ ...... ++ .+++++.      ++.|..||..+|+.+..+......     
T Consensus       140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence            67788 789998888765 2     22 122221 33 4555443      689999999999999888643211     


Q ss_pred             ---------------------------eEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceE
Q 041916           63 ---------------------------TDVMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTAAPLI   96 (359)
Q Consensus        63 ---------------------------v~~~~~sp~~~~l~sg~~dg-------------------~v~lwd~~~~~~~~   96 (359)
                                                 ...++++|++.+++.++.++                   .|..+|..+++.+.
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                                       13578889888888887664                   59999999999888


Q ss_pred             EEec--cC-------CCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCceeeEecc-CCc-------------------
Q 041916           97 KMLC--HQ-------GPVSALAFHPNG---HLMATSGKECKIKIWDLRKYEVLQTLP-GHA-------------------  144 (359)
Q Consensus        97 ~~~~--h~-------~~v~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i-------------------  144 (359)
                      .++.  |.       .....+....+|   ..+++++.+|.|+++|..+++++..++ .++                   
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~  377 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR  377 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence            8763  21       112223333477   678999999999999999998876552 110                   


Q ss_pred             ------------------eeEEEcCCc--eEEEEc-------------------------------------------CC
Q 041916          145 ------------------KTLDFSQKG--LLAVGT-------------------------------------------GS  161 (359)
Q Consensus       145 ------------------~~~~~s~~g--l~~~~~-------------------------------------------d~  161 (359)
                                        ..++++|++  +++...                                           .|
T Consensus       378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g  457 (677)
T 1kb0_A          378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG  457 (677)
T ss_dssp             CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred             cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence                              256888876  444332                                           16


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN  221 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~  221 (359)
                      .|..||+.++. ..-.+. +..    ++.+..+...+..+++++.+|.+..|...+++-.
T Consensus       458 ~l~A~D~~tG~-~~W~~~-~~~----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          458 RLLAWDPVAQK-AAWSVE-HVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             EEEEEETTTTE-EEEEEE-ESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEEeCCCCc-EEeecC-CCC----CCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence            79999987773 333332 211    4555667788889999999998888877666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.01  E-value=4.9e-08  Score=82.81  Aligned_cols=166  Identities=11%  Similarity=-0.027  Sum_probs=117.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |.++| .+|+.+..+.-....  ..+++.. +.+.++...++.+.++|..+++.+.++......  ...+++||..++++
T Consensus        46 v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs  122 (266)
T 2iwa_A           46 VRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGS  122 (266)
T ss_dssp             EEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEE
Confidence            67888 889988887643333  4555553 234444456889999999999999988744111  23355677766666


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC-----------
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG-----------  142 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----------  142 (359)
                      ..++.|.++|+.+.+.+..+....     ...+.+.|. +|..++....++.|.+.|..+++.+..+.-           
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc
Confidence            778999999999988877776321     136788888 675555554678999999999998877721           


Q ss_pred             -----CceeEEEcCCc--eEEEE-cCCcEEEEcCCCC
Q 041916          143 -----HAKTLDFSQKG--LLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus       143 -----~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~  171 (359)
                           ....|+|+|++  +++++ ..+.|.+.++...
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                 23799999998  44444 5678888886443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.96  E-value=1.9e-08  Score=88.58  Aligned_cols=171  Identities=11%  Similarity=0.053  Sum_probs=119.2

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA  109 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~  109 (359)
                      +..|..++.++.|..+|.. |+....+..+...+.++...+++. +..|+.++.|..||.. +..+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4456777788999999998 888777776666677777777776 5557788999999998 777777665566677888


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916          110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK  185 (359)
Q Consensus       110 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  185 (359)
                      +.+++.+++ ++  +.|..|| .+++.+..+   ...+.++...++| +++++.++.|..+|. ++ .....+.....  
T Consensus       184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~--  255 (330)
T 3hxj_A          184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG-TEKWRFKTGKR--  255 (330)
T ss_dssp             ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS-CEEEEEECSSC--
T ss_pred             EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC-CEeEEeeCCCC--
Confidence            888887554 44  7899999 777666555   2457889999998 888888889999973 44 33333332211  


Q ss_pred             CcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          186 GYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       186 ~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        .+.++.+.+++ .|.+++.+|.+..+.
T Consensus       256 --~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          256 --IESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             --CCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             --ccccceEcCCC-eEEEecCCCCEEEEC
Confidence              23445555555 455666676555554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.95  E-value=1.5e-08  Score=90.71  Aligned_cols=186  Identities=8%  Similarity=-0.073  Sum_probs=114.0

Q ss_pred             CeEEEe-CCCcEEEEeccC--------CCeEEEEEecCCCEEEEEec--CCeEEE--EECCCCeEEEEEecCCC------
Q 041916            1 YPYIYN-RDGTELHCLKEH--------GAVLKLQFLRNHFLLASINK--FGQLRY--QDVTMGEIVGNFRTGLG------   61 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h--------~~~~~l~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~------   61 (359)
                      +|.+|| .+++.+.++.-+        ..+..++|+|||++|+++..  +..|.+  +|+.+   +..+.....      
T Consensus        97 ~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~  173 (368)
T 1mda_H           97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPG  173 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEE
T ss_pred             EEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccC
Confidence            378999 899999998754        34588999999999988864  467888  88865   333321100      


Q ss_pred             -CeEEEEE-------------------------------------cCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEec-
Q 041916           62 -RTDVMRV-------------------------------------NPFNGVVSLGHSGGTVTMWKPTTAAP--LIKMLC-  100 (359)
Q Consensus        62 -~v~~~~~-------------------------------------sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~~-  100 (359)
                       .-.-+++                                     ++++..++..+. +.|.+.|+.+...  +..+.. 
T Consensus       174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred             CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence             0000111                                     222222222333 5566666543221  111110 


Q ss_pred             ---------cCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc---eEEE
Q 041916          101 ---------HQGPVSALAFHPNGHLMATSGK---------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG---LLAV  157 (359)
Q Consensus       101 ---------h~~~v~~i~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g---l~~~  157 (359)
                               .......++|+|+++.++++..         +..+.++|+.+++.+..+  ......++|+|+|   +++.
T Consensus       253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~  332 (368)
T 1mda_H          253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence                     0111122789999998887543         235669999999998888  3468999999999   4555


Q ss_pred             E-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee
Q 041916          158 G-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       158 ~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      . .++.|.++|+.+. +.+..+....     ....+++.+
T Consensus       333 ~~~~~~VsVID~~t~-kvv~~I~vg~-----~P~~i~~~~  366 (368)
T 1mda_H          333 SAGTEVLDIYDAASD-QDQSSVELDK-----GPESLSVQN  366 (368)
T ss_dssp             ETTTTEEEEEESSSC-EEEEECCCCS-----CCCEEECCC
T ss_pred             cCCCCeEEEEECCCC-cEEEEEECCC-----CCCEEEeec
Confidence            5 4899999998776 4555444332     345555543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=4.8e-07  Score=81.29  Aligned_cols=201  Identities=11%  Similarity=0.011  Sum_probs=128.0

Q ss_pred             eEEEe-CCCcEEEEeccCC----------Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 041916            2 PYIYN-RDGTELHCLKEHG----------AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN   69 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~----------~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s   69 (359)
                      |+.|| .+|+.+..+....          .+ ..+.  .++..+++++.++.|..+|..+|+.+..+.............
T Consensus        65 v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~  142 (376)
T 3q7m_A           65 VKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS  142 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             EEEEEccCCceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE
Confidence            67788 6888876665522          22 2222  245577778889999999999999988777543322222222


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC-
Q 041916           70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV-----SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH-  143 (359)
Q Consensus        70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-  143 (359)
                        +..+++++.++.|..+|..+++.+..+.......     .....  .+..+++++.++.|..+|..+++.+...... 
T Consensus       143 --~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          143 --DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             --TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred             --CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence              4577888899999999999998887765432211     12222  2456788888999999999999887666211 


Q ss_pred             ------------c-eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          144 ------------A-KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       144 ------------i-~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                                  + ....+. ++ +++++.++.+..+|..++. ........      ....+..  ++..+.+++.+|.
T Consensus       219 ~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~-~~w~~~~~------~~~~~~~--~~~~l~~~~~~g~  288 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQ-IMWKRELG------SVNDFIV--DGNRIYLVDQNDR  288 (376)
T ss_dssp             -----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCC-EEEEECCC------CEEEEEE--ETTEEEEEETTCC
T ss_pred             CCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCc-EEeeccCC------CCCCceE--ECCEEEEEcCCCe
Confidence                        1 111122 34 7777788999999987773 32222211      2333333  4667777777776


Q ss_pred             EEEEEcCCC
Q 041916          210 SSILVPGSG  218 (359)
Q Consensus       210 ~~i~~~~~~  218 (359)
                      +..+...++
T Consensus       289 l~~~d~~tG  297 (376)
T 3q7m_A          289 VMALTIDGG  297 (376)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            666665444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=2.5e-07  Score=83.17  Aligned_cols=207  Identities=16%  Similarity=0.126  Sum_probs=131.9

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-----EEEEEcCCCCE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT-----DVMRVNPFNGV   74 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~   74 (359)
                      |+.+| .+|+.+..+.....+ ......  +..+++++.++.|..+|..+|+.+..+.......     ......  +..
T Consensus       115 l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~  190 (376)
T 3q7m_A          115 VYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA  190 (376)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE
T ss_pred             EEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE
Confidence            67788 788888777655444 333332  3467778889999999999999888876543211     112222  356


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCC-------eEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGP-------VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA  144 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~-------v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i  144 (359)
                      ++.++.+|.|..+|+.+++.+.........       +..+...|  .+..+++++.++.|..+|..+++.+.... ...
T Consensus       191 v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~  270 (376)
T 3q7m_A          191 AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV  270 (376)
T ss_dssp             EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC
Confidence            777888999999999999887766532110       00011122  35678888889999999999998877663 334


Q ss_pred             eeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          145 KTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       145 ~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      ..+....+.+++++.++.|..+|..++. ........   ....+.....  .+..|++++.+|.+..+...++
T Consensus       271 ~~~~~~~~~l~~~~~~g~l~~~d~~tG~-~~w~~~~~---~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          271 NDFIVDGNRIYLVDQNDRVMALTIDGGV-TLWTQSDL---LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             EEEEEETTEEEEEETTCCEEEEETTTCC-EEEEECTT---TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred             CCceEECCEEEEEcCCCeEEEEECCCCc-EEEeeccc---CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence            4555543338888889999999987773 33222211   0112222222  3567888888887777775543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.94  E-value=7.5e-08  Score=93.74  Aligned_cols=212  Identities=10%  Similarity=0.047  Sum_probs=137.5

Q ss_pred             eEEEe-CCCcEEEEeccC--CCe-EEEEEec---CCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCC---------
Q 041916            2 PYIYN-RDGTELHCLKEH--GAV-LKLQFLR---NHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGL---------   60 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h--~~~-~~l~~s~---~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~---------   60 (359)
                      |+.+| .+|+++..+...  ... ..+..+|   ++..++..+     .+|.|..||..+|+.+..+....         
T Consensus       133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~  212 (689)
T 1yiq_A          133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEG  212 (689)
T ss_dssp             EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCS
T ss_pred             EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccc
Confidence            67788 789988776653  111 1111222   444443322     36899999999999998876311         


Q ss_pred             ----------------------CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCcceEEEe
Q 041916           61 ----------------------GRTDVMRVNPFNGVVSLGHSGGT-------------------VTMWKPTTAAPLIKML   99 (359)
Q Consensus        61 ----------------------~~v~~~~~sp~~~~l~sg~~dg~-------------------v~lwd~~~~~~~~~~~   99 (359)
                                            .....++++|++.+++.++.++.                   |..||+.+++.+..++
T Consensus       213 ~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~  292 (689)
T 1yiq_A          213 KGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ  292 (689)
T ss_dssp             HHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee
Confidence                                  01125788898889999888764                   9999999999988876


Q ss_pred             c--cC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEecc-C------------------------
Q 041916          100 C--HQ-------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTLP-G------------------------  142 (359)
Q Consensus       100 ~--h~-------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------------------  142 (359)
                      .  |.       .++.......+|.   .++.++.+|.++++|..+++++...+ .                        
T Consensus       293 ~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~  372 (689)
T 1yiq_A          293 TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY  372 (689)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred             cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence            4  21       1222222223565   78889999999999999998873320 0                        


Q ss_pred             -----------------CceeEEEcCCc--eEEEEc--------------------------------------------
Q 041916          143 -----------------HAKTLDFSQKG--LLAVGT--------------------------------------------  159 (359)
Q Consensus       143 -----------------~i~~~~~s~~g--l~~~~~--------------------------------------------  159 (359)
                                       .-..++++|+.  +++...                                            
T Consensus       373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~  452 (689)
T 1yiq_A          373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS  452 (689)
T ss_dssp             TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred             cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence                             01236888876  443321                                            


Q ss_pred             -CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          160 -GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       160 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                       +|.|..||+.++ +..-.+..+.     ++....+...+.++++|+.||.+..|...++.
T Consensus       453 ~~g~l~A~D~~tG-~~~W~~~~~~-----~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          453 WSGKLIAWDPVKQ-QAAWEVPYVT-----IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CEEEEEEEETTTT-EEEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceeEEEEECCCC-CeEeEccCCC-----CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence             367889998777 3333333322     33444667788899999999988888765544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.86  E-value=2.3e-07  Score=86.78  Aligned_cols=187  Identities=10%  Similarity=-0.020  Sum_probs=128.5

Q ss_pred             cCCCEEEEEec-CCeEEEEECCCCeEEEEEecC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 041916           28 RNHFLLASINK-FGQLRYQDVTMGEIVGNFRTG-LGRTDVMRV-N-PFNGVVSLGH------------------SGGTVT   85 (359)
Q Consensus        28 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-s-p~~~~l~sg~------------------~dg~v~   85 (359)
                      +||++|+.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37877766654 567999999999988855433 245788998 5 9999988884                  346899


Q ss_pred             EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eEE
Q 041916           86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--------------------------------------KIK  127 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--------------------------------------~i~  127 (359)
                      ++|..+.+.+..+.... .-..++++|+|+++++++.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988877766322 345688999999999888553                                      377


Q ss_pred             EEEcCC--cee-eEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-------ccceeecccCCCCcceEEE
Q 041916          128 IWDLRK--YEV-LQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-------NYSRYMGHSMVKGYQIGKV  192 (359)
Q Consensus       128 iwd~~~--~~~-~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~  192 (359)
                      +.|.++  ++. +..+  .....++.++|||  +++++ .+++|.++|+.+...       ......... ..+.....+
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~  336 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHT  336 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceE
Confidence            778777  444 4444  3467899999999  33333 568999999764310       001111111 134468899


Q ss_pred             EEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          193 SFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       193 ~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +|+|+|...++.-.++.+..|...
T Consensus       337 aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          337 AFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHH
T ss_pred             EECCCCeEEEEEecCCcEEEEEhh
Confidence            999999444555566666666543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=3.9e-06  Score=71.53  Aligned_cols=149  Identities=12%  Similarity=0.031  Sum_probs=98.8

Q ss_pred             eEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           21 VLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        21 ~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      +.+++|++++..|+ +-..++.|..+++..+.....+.........++++|++. ++++-...+.|.++++.........
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~  117 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF  117 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence            47899999765555 444578999999976654333333335688999999765 4445556789999998744322222


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVG-TGSFVQILGD  168 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~  168 (359)
                      .........++++|++..|+.+..   .+.|..+++.... ...+    -.....++++|++  ++.+. ..+.|.++|+
T Consensus       118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence            222245689999997676666554   3688888876432 2222    2356899999976  55555 4579999996


Q ss_pred             CC
Q 041916          169 FS  170 (359)
Q Consensus       169 ~~  170 (359)
                      ..
T Consensus       197 ~g  198 (267)
T 1npe_A          197 AQ  198 (267)
T ss_dssp             TE
T ss_pred             CC
Confidence            53

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=3.4e-06  Score=74.06  Aligned_cols=186  Identities=12%  Similarity=0.045  Sum_probs=110.6

Q ss_pred             CeEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 041916           20 AVLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNP-FNGVVSLGHS------------   80 (359)
Q Consensus        20 ~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp-~~~~l~sg~~------------   80 (359)
                      .+.++++.+ ++.++ .+...+.|..+|..++.. ..+..     ....++.+++.| +|.++++-..            
T Consensus        81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            358899998 66544 444455588899775542 22221     113478899999 9987776432            


Q ss_pred             -----CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCc-----eeeEeccCCceeEEE
Q 041916           81 -----GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKY-----EVLQTLPGHAKTLDF  149 (359)
Q Consensus        81 -----dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~-----~~~~~~~~~i~~~~~  149 (359)
                           +|.|..||..++........ -.....|+|+|+|++|+++ +..+.|..||+...     +....+.+ ...+++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                 36799999876654322222 2234679999999977665 55689999998742     22223445 788999


Q ss_pred             cCCc-eEEEE-c----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          150 SQKG-LLAVG-T----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       150 s~~g-l~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      +++| ++++. .          .+.|..+|. .+ .....+.......-..++++++ .++.++++....+.+..
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G-~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FG-NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TS-CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECC-CC-CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence            9999 55544 3          367888884 33 4444443321101124566665 34433333333333333

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.84  E-value=3.6e-07  Score=76.68  Aligned_cols=154  Identities=11%  Similarity=0.057  Sum_probs=109.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      |+++| .+|+.+..+.-..........+++..|.. ...++.+.+||..+.+.+.++...... ..++  +++..|+.+.
T Consensus        67 v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~Sd  143 (262)
T 3nol_A           67 IRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSD  143 (262)
T ss_dssp             EEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECC
T ss_pred             EEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEEC
Confidence            67889 89999888876655544333334444444 445889999999999999999864322 3344  5676666666


Q ss_pred             CCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC------------
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG------------  142 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------  142 (359)
                      .++.|.++|+.+.+.+..+....     ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.-            
T Consensus       144 Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~  222 (262)
T 3nol_A          144 GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS  222 (262)
T ss_dssp             SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred             CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence            67889999999998887766321     335567776 676555555688999999999998777611            


Q ss_pred             ---CceeEEEcCCc--eEEEEc
Q 041916          143 ---HAKTLDFSQKG--LLAVGT  159 (359)
Q Consensus       143 ---~i~~~~~s~~g--l~~~~~  159 (359)
                         -.+.|+|+|++  +++.|.
T Consensus       223 ~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          223 PIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SCCCEEEEEEETTTTEEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEECC
Confidence               23789999987  666663

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.79  E-value=5.9e-06  Score=70.42  Aligned_cols=193  Identities=9%  Similarity=0.003  Sum_probs=116.0

Q ss_pred             eEEEeCCCcEEE-Eecc-CCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYNRDGTELH-CLKE-HGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~~~~-~l~~-h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |++++.+|.... .+.. ...+.+++++|++..|+ +-...+.|.++++........+.........++++|++..|+.+
T Consensus        60 I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             EEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence            455663343222 2222 23569999999765554 44557899999987433222222233567899999976655544


Q ss_pred             eC---CCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916           79 HS---GGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ  151 (359)
Q Consensus        79 ~~---dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~  151 (359)
                      ..   .+.|..+++... ....+. ..-.....++++|++..|+.+. ..+.|.++|+........+  ......++...
T Consensus       140 ~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~  218 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG  218 (267)
T ss_dssp             ECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET
T ss_pred             ECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeC
Confidence            43   468888887643 333332 2234568999999877766555 5679999999764433222  23446777653


Q ss_pred             CceEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          152 KGLLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       152 ~gl~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      +.++.+. .++.|..+|..++ .....+...   .......+++.|++.
T Consensus       219 ~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g---~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          219 KNLYYTDWKTNSVIAMDLAIS-KEMDTFHPH---KQTRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTTT-EEEEEECCS---SCCCCCCEEEECSCC
T ss_pred             CEEEEEECCCCeEEEEeCCCC-CceEEEccc---cccccceeeecCccC
Confidence            2255555 4579999997665 344443322   111367788888764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.78  E-value=4.7e-07  Score=87.86  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=128.9

Q ss_pred             eEEEe-CCCcEEEEeccC-------------------------------CCe-EEEEEecCCCEEEEEecCC--------
Q 041916            2 PYIYN-RDGTELHCLKEH-------------------------------GAV-LKLQFLRNHFLLASINKFG--------   40 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h-------------------------------~~~-~~l~~s~~~~~l~s~~~dg--------   40 (359)
                      |+.|| .+|+++..+...                               ..+ ..+++.|+..+++.++.++        
T Consensus       180 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~  259 (668)
T 1kv9_A          180 VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVR  259 (668)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCC
Confidence            67889 899998777531                               112 3578999888888887665        


Q ss_pred             -----------eEEEEECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCcceEE
Q 041916           41 -----------QLRYQDVTMGEIVGNFRT--GL-------GRTDVMRVNPFNG---VVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        41 -----------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                                 .|..+|..+|+.+..++.  |.       .++....+..+|.   .++.++.+|.++++|..+++.+..
T Consensus       260 ~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  339 (668)
T 1kv9_A          260 SPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (668)
T ss_dssp             STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             CCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence                       499999999999988875  22       2222223333564   688899999999999999988744


Q ss_pred             EeccC-----------C-C------------------------eEEEEEcCCCCEEEEEe--------------------
Q 041916           98 MLCHQ-----------G-P------------------------VSALAFHPNGHLMATSG--------------------  121 (359)
Q Consensus        98 ~~~h~-----------~-~------------------------v~~i~~~~~~~~l~~~~--------------------  121 (359)
                      .....           + +                        -..++++|+..++++..                    
T Consensus       340 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~  419 (668)
T 1kv9_A          340 EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF  419 (668)
T ss_dssp             EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC
T ss_pred             ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc
Confidence            32111           0 0                        01267888777665421                    


Q ss_pred             ----------------CCCeEEEEEcCCceeeEec--cCCceeEEEcC-Cc-eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916          122 ----------------KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ-KG-LLAVGTGSFVQILGDFSGSHNYSRYMGH  181 (359)
Q Consensus       122 ----------------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~-~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~  181 (359)
                                      .+|.|..||+.+++.+..+  ..+.....+.. .+ +++++.|+.|++||..++ +.+..+...
T Consensus       420 ~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~~~~  498 (668)
T 1kv9_A          420 NTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEAQ  498 (668)
T ss_dssp             CCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred             ccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEecCC
Confidence                            2478999999999987766  23333333333 34 677778999999998777 444444333


Q ss_pred             cCCCCcceEEEEEeeCCC-EEEEEc
Q 041916          182 SMVKGYQIGKVSFRPYED-VLGIGH  205 (359)
Q Consensus       182 ~~~~~~~v~~~~~~p~~~-~l~~~~  205 (359)
                      .....   .-+.+..+|+ ++++++
T Consensus       499 ~~~~~---~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          499 SGIVA---APMTFELAGRQYVAIMA  520 (668)
T ss_dssp             SCCCS---CCEEEEETTEEEEEEEE
T ss_pred             CCccc---CceEEEECCEEEEEEEe
Confidence            21111   2234456666 444444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.75  E-value=2.2e-06  Score=71.23  Aligned_cols=153  Identities=13%  Similarity=0.077  Sum_probs=109.4

Q ss_pred             eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+++| .+|+.+..+.-....  -.+++.. +.+.+....++.+.+||..+.+.+.++...... ..++  +++..|+.+
T Consensus        45 v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS  120 (243)
T 3mbr_X           45 VRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS  120 (243)
T ss_dssp             EEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE
Confidence            67889 889998888766555  4445543 334444556899999999999999999864332 4555  456666666


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------  141 (359)
                      ..++.|.++|+.+.+.+.++....     ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.            
T Consensus       121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~  199 (243)
T 3mbr_X          121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT  199 (243)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred             CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence            678899999999998887776322     245667765 66655555567899999999999877661            


Q ss_pred             ----CCceeEEEcCCc--eEEEEc
Q 041916          142 ----GHAKTLDFSQKG--LLAVGT  159 (359)
Q Consensus       142 ----~~i~~~~~s~~g--l~~~~~  159 (359)
                          .-.+.|+++|++  +++.|-
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcCCceEEEEEcCCCCEEEEECC
Confidence                123789999977  666663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.75  E-value=6e-06  Score=72.01  Aligned_cols=200  Identities=10%  Similarity=-0.034  Sum_probs=118.5

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecC--CeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKF--GQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+.||.++.....+.....+.+++++++++++++....  ..|..+|..+++....... .......++..+++..+++.
T Consensus        55 I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d  134 (306)
T 2p4o_A           55 IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD  134 (306)
T ss_dssp             EEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred             EEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEE
Confidence            55666555554444443445899999999866654332  2477788888875433322 22334566666665555555


Q ss_pred             eCCCeEEEEeCCCCcc-eEEEe---------ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-cee--eEec--cC
Q 041916           79 HSGGTVTMWKPTTAAP-LIKML---------CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEV--LQTL--PG  142 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~-~~~~~---------~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~~--~~  142 (359)
                      ..+|.|.++|..++.. +....         ..-...+.|  +|++.+|+++. ..+.|..||+.. +..  ...+  ..
T Consensus       135 ~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~  212 (306)
T 2p4o_A          135 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT  212 (306)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred             CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC
Confidence            5689999999875421 11110         111234555  78887766554 567999999874 321  1122  23


Q ss_pred             CceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe---eCCCEEEEEcCC
Q 041916          143 HAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR---PYEDVLGIGHSM  207 (359)
Q Consensus       143 ~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~~~~~d  207 (359)
                      ....++++++| ++++. ..+.|.+||.. + .... +..... .....++++|.   |++..|++++..
T Consensus       213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~-~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          213 NIDDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTI-IAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCSSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEE-EECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEE-Eeeccc-ccCCceEEEEecccCCCCEEEEECCC
Confidence            56889999999 55554 46899999853 3 2211 111111 12368899998   888766655443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.70  E-value=1.7e-06  Score=85.23  Aligned_cols=186  Identities=12%  Similarity=0.135  Sum_probs=111.4

Q ss_pred             EEEEEe-cCCCEEEEEec-CC----eEEEEECCCC-eEEE-EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEe
Q 041916           22 LKLQFL-RNHFLLASINK-FG----QLRYQDVTMG-EIVG-NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWK   88 (359)
Q Consensus        22 ~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd   88 (359)
                      ...+|| |||++||.+.. +|    .|+++|+.+| +.+. .+.   .....++|+|||+.|+....|     ..|.+++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            778999 99998876543 22    5999999998 6321 111   113468899999887777654     3588888


Q ss_pred             CCCCcce--EEEe-ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCc--ee-eEec----cCCceeEEEcCCc-e
Q 041916           89 PTTAAPL--IKML-CHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKY--EV-LQTL----PGHAKTLDFSQKG-L  154 (359)
Q Consensus        89 ~~~~~~~--~~~~-~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~--~~-~~~~----~~~i~~~~~s~~g-l  154 (359)
                      +.++...  ..+. .......++.|+|||++|+..+.   ...|.++|+.++  .. +..+    .+...++.|+..+ +
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l  333 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL  333 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence            8876532  3333 23345678899999999877653   346888999875  22 1333    2234555555444 5


Q ss_pred             EEEEc-C----CcEEEEcCCCCCCccce-eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          155 LAVGT-G----SFVQILGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       155 ~~~~~-d----~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +..+. +    ..|..+++.+. ..... +..+.  ....+.++.+. .+.++++...+|...+++
T Consensus       334 ~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~--~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          334 VILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHS--EDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEECTTTCTTCEEEEEETTST-TCCCCEEECCC--SSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCC--CCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            54443 2    26777775432 12223 33332  12245555554 233455566677766654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=2e-06  Score=81.85  Aligned_cols=176  Identities=10%  Similarity=0.025  Sum_probs=111.7

Q ss_pred             EEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCC---------CCeEEEEEcCCCC---E
Q 041916           23 KLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPFNG---V   74 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~~---~   74 (359)
                      .+++.++...++.++.+                +.|..+|..+|+.+..++...         .....+...++|+   .
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~  318 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence            36777776666666532                369999999999998886421         1111122234673   6


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccC-------------CCe--------------------------EEEEEcCCCC
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQ-------------GPV--------------------------SALAFHPNGH  115 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~i~~~~~~~  115 (359)
                      ++.++.+|.+.++|..+++.+..+....             .++                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            7788999999999999998877654221             111                          2467888877


Q ss_pred             EEEEEe-------------------------------------CCCeEEEEEcCCceeeEecc--CCceeEEE-cCCc-e
Q 041916          116 LMATSG-------------------------------------KECKIKIWDLRKYEVLQTLP--GHAKTLDF-SQKG-L  154 (359)
Q Consensus       116 ~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~--~~i~~~~~-s~~g-l  154 (359)
                      ++++.+                                     .++.|..||+.+++.+..++  ..+.+..+ ..++ +
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  478 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV  478 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence            777654                                     34789999999999877762  23332222 2345 7


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      ++++.|+.|+.||..++ +.+..+.........+   +.+..+|+.++
T Consensus       479 ~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p---~~~~~~G~~yv  522 (571)
T 2ad6_A          479 WYATLDGYLKALDNKDG-KELWNFKMPSGGIGSP---MTYSFKGKQYI  522 (571)
T ss_dssp             EEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred             EEEcCCCeEEEEECCCC-CEEEEEeCCCCcEeee---EEEEECCEEEE
Confidence            77788999999998877 4444443322111222   33557776443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.68  E-value=2e-06  Score=72.21  Aligned_cols=151  Identities=13%  Similarity=0.014  Sum_probs=106.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+++| .+|+.+..+ -....  -.+++..+ .+.+....++.+.+||..+++.+.++..... -..++  +++..|+.+
T Consensus        77 v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vS  151 (268)
T 3nok_A           77 LRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRS  151 (268)
T ss_dssp             EEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEE
T ss_pred             EEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEE
Confidence            56778 778877666 33343  33555432 3444455689999999999999999986432 23444  567777777


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------  141 (359)
                      ..++.|.++|+.+.+.+.++....     ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.            
T Consensus       152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~  230 (268)
T 3nok_A          152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV  230 (268)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred             CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence            778999999999998887776322     245677776 77655555568899999999999877661            


Q ss_pred             ----CCceeEEEcCCc--eEEEE
Q 041916          142 ----GHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       142 ----~~i~~~~~s~~g--l~~~~  158 (359)
                          .-.+.|+|+|++  +++.|
T Consensus       231 ~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          231 TNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cCcCCceEEEEEcCCCCEEEEeC
Confidence                124889999987  66665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.66  E-value=8e-06  Score=71.68  Aligned_cols=180  Identities=11%  Similarity=-0.015  Sum_probs=115.9

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--------------------CCCeEEEEEcC-CCCEEEE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--------------------LGRTDVMRVNP-FNGVVSL   77 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~sp-~~~~l~s   77 (359)
                      ..+.+++|++++.+++++..++.|..||..++... .+...                    ...+.++++.+ ++.++ .
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-I   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-E
Confidence            34588999999987888888999999998766533 23210                    12478899998 55544 4


Q ss_pred             EeCCCeEEEEeCCCCcceEEEec-----cCCCeEEEEEcC-CCCEEEEEeC-----------------CCeEEEEEcCCc
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLC-----HQGPVSALAFHP-NGHLMATSGK-----------------ECKIKIWDLRKY  134 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~-----h~~~v~~i~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~  134 (359)
                      +...+.|..+|..++.. ..+..     .......+++.| +|++.++-..                 ++.|..||..++
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            54445588888775532 22211     113468899999 9987666432                 367999998776


Q ss_pred             eeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          135 EVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       135 ~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ......  -.....++|+|+|  ++++. ..+.|.+|++..... ....+..  . .+  ...+++.++|.++++...
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~-~g--P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--I-PN--PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--C-SS--EEEEEECTTSCEEEEEEE
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--C-CC--CCCeEECCCCCEEEEecC
Confidence            543222  2356789999998  44454 457899998654211 1122221  1 22  677899999987666544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.65  E-value=3.8e-05  Score=64.65  Aligned_cols=193  Identities=12%  Similarity=0.071  Sum_probs=122.4

Q ss_pred             EeccCCC-eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           14 CLKEHGA-VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        14 ~l~~h~~-~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      -+.+-.. +..++|+|++. ++++...++.|...|+. ++.+..+.- .....-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3444433 59999999865 45557778999999998 888887753 23567889999988877776677889999876


Q ss_pred             CCcce---EEEe------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec----------cCCceeEE
Q 041916           91 TAAPL---IKML------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL----------PGHAKTLD  148 (359)
Q Consensus        91 ~~~~~---~~~~------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~----------~~~i~~~~  148 (359)
                      ....+   ....      ........|+|+|.++.|+++.......+|.+..   ...+..+          -..+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            54422   2221      1233468999999998877777655445554431   1111111          12468999


Q ss_pred             EcCCc--eEEEEc-CCcEEEEcCCCCCCccceeecccCC-----CCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          149 FSQKG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       149 ~s~~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      ++|..  +++.+. +..|.++|. .+ .....+.-....     .-.....|+|.++|+..++ +.....
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~-~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~  246 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTL-VG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRF  246 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECT-TC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcC-CC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceE
Confidence            99976  666664 578888884 34 233322211100     0125789999999975544 444433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=0.00017  Score=63.10  Aligned_cols=209  Identities=10%  Similarity=-0.066  Sum_probs=123.6

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCC---CeE-EEEEecCCCCeEEEEEcCCC-CE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTM---GEI-VGNFRTGLGRTDVMRVNPFN-GV   74 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~---~~~-~~~~~~~~~~v~~~~~sp~~-~~   74 (359)
                      |+..| ..+.....+..-..+.+++|++.+..|+.+ ...+.|..+++..   +.. ...+......+..+++.+.+ .+
T Consensus        12 I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~l   91 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI   91 (316)
T ss_dssp             EEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEE
T ss_pred             EEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeE
Confidence            55666 333444445555566899999876555444 4568999999875   122 22233333456889998755 45


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceeeEec----cCCceeEE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE--CKIKIWDLRKYEVLQTL----PGHAKTLD  148 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~----~~~i~~~~  148 (359)
                      +++-...+.|.++++........+...-.....++++|.+..|+.+...  +.|..+++.... ...+    -.....|+
T Consensus        92 y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla  170 (316)
T 1ijq_A           92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGIT  170 (316)
T ss_dssp             EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEE
T ss_pred             EEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEE
Confidence            5555678899999987443322233333567899999977766665543  688888886432 2222    23568999


Q ss_pred             EcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          149 FSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       149 ~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ++|++  ++.+. ..+.|..+|+...  ....+..... .......+++. .+.++++....+.+..+..
T Consensus       171 ~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~~-~~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          171 LDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecCC-ccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            99876  55555 4578999996532  2233322110 11235677774 4555555555565555554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.64  E-value=2.2e-05  Score=68.37  Aligned_cols=197  Identities=9%  Similarity=0.022  Sum_probs=119.3

Q ss_pred             CcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--CeEEE
Q 041916            9 GTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG--GTVTM   86 (359)
Q Consensus         9 g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d--g~v~l   86 (359)
                      .+.+..+.....+..++|++++.++++-..++.|..||... .....+. ....+.++++.++|+++++....  ..|..
T Consensus        22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            34566676655669999999999777766789999999875 4443333 23568899999999976665432  24777


Q ss_pred             EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE---------ec-c--CCceeEEEcCC
Q 041916           87 WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ---------TL-P--GHAKTLDFSQK  152 (359)
Q Consensus        87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---------~~-~--~~i~~~~~s~~  152 (359)
                      +|..+++...... ........++..+++..+++-..++.|..+|..++.. +.         .. .  .....+  +|+
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d  177 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF  177 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred             EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence            7877776432222 1122335566666555455544688999999876421 11         01 1  123445  777


Q ss_pred             c--eEEEE-cCCcEEEEcCCCCCCc--cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          153 G--LLAVG-TGSFVQILGDFSGSHN--YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       153 g--l~~~~-~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      +  ++++. ..+.|..|++......  ...+...     .....++++++|.++++....+.+.++.
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence            6  44444 4578999996542111  1111111     1356688888887666655555555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.61  E-value=9.3e-05  Score=66.72  Aligned_cols=207  Identities=9%  Similarity=-0.033  Sum_probs=124.5

Q ss_pred             eEEEeCCC-cEEEEeccCCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916            2 PYIYNRDG-TELHCLKEHGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG   78 (359)
Q Consensus         2 v~iwd~~g-~~~~~l~~h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg   78 (359)
                      |+.++.++ .....+.....+..++|++.+..|+ +-...+.|..+++..+.....+.........+++.+.+ .++++-
T Consensus        98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d  177 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD  177 (386)
T ss_dssp             EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc
Confidence            44455333 2233344455568999998655554 44457899999998665444444444456789998755 455555


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E-CKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g  153 (359)
                      ...+.|.+.++........+.........|+++|.+..|+.+.. . +.|..+++.........   -.....|+|+|++
T Consensus       178 ~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~  257 (386)
T 3v65_B          178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  257 (386)
T ss_dssp             TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG
T ss_pred             CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC
Confidence            66788999988754433333333356789999997776665543 3 68888888753322222   2246899999866


Q ss_pred             --eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 --LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        ++.+. ..+.|..+|+... .. ..+...   .......+++ ..+.++.+....+.+..+.
T Consensus       258 ~~lY~aD~~~~~I~~~d~dG~-~~-~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          258 RRMYWVDAKHHVIERANLDGS-HR-KAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             TEEEEEETTTTEEEEECTTSC-SC-EEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCC-ee-EEEEEC---CCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence              55554 4578999986432 22 222221   1124567777 4455555555555555554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.61  E-value=0.00019  Score=63.75  Aligned_cols=207  Identities=9%  Similarity=-0.033  Sum_probs=124.1

Q ss_pred             eEEEeCCCc-EEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916            2 PYIYNRDGT-ELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~-~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg   78 (359)
                      |+..+.+|. ....+.....+..++|++....|+.+ ...+.|..+++..+.....+.........+++.+.+ .++++-
T Consensus        55 I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d  134 (349)
T 3v64_C           55 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD  134 (349)
T ss_dssp             EEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred             eEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc
Confidence            344453343 33334444556899999866555544 457899999988665444444344556789998755 455555


Q ss_pred             eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEEcCCceeeEecc---CCceeEEEcCCc
Q 041916           79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KE-CKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG  153 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g  153 (359)
                      ...+.|.+.++........+...-.....|+++|.+..|+.+. .. +.|..+++..........   .....|+++|++
T Consensus       135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~  214 (349)
T 3v64_C          135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG  214 (349)
T ss_dssp             TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred             CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence            6678899999875443333333335578999999666665554 44 789988887533222222   246899999865


Q ss_pred             --eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 --LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                        ++.+. ..+.|..+|+... . ...+...   .......+++ ..+.++.+-...+.+..+.
T Consensus       215 ~~lY~aD~~~~~I~~~~~dG~-~-~~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          215 RRMYWVDAKHHVIERANLDGS-H-RKAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSC-S-CEEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCC-c-eEEEEeC---CCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence              55554 4578999986432 2 2222211   1124567777 4455555555555555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=5.4e-06  Score=80.39  Aligned_cols=212  Identities=11%  Similarity=0.091  Sum_probs=133.6

Q ss_pred             eEEEe-CCCcEEEEeccCCC--eEEEEEec--CCCEEEEEec------CCeEEEEECCCCeEEEEEecCC-C--------
Q 041916            2 PYIYN-RDGTELHCLKEHGA--VLKLQFLR--NHFLLASINK------FGQLRYQDVTMGEIVGNFRTGL-G--------   61 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~--~~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~-~--------   61 (359)
                      |+.+| .+|+++..+.....  ...+..+|  .+..+++++.      +|.|..+|..+|+.+..+.... .        
T Consensus       129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             EEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence            56788 78998877665311  01111111  1234444433      5899999999999998886311 0        


Q ss_pred             ----------------------CeEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceEEEec
Q 041916           62 ----------------------RTDVMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        62 ----------------------~v~~~~~sp~~~~l~sg~~dg-------------------~v~lwd~~~~~~~~~~~~  100 (359)
                                            ....+++.|++.+++.++.++                   .|..+|+.+++.+..++.
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                                  112468888888888888776                   399999999998888764


Q ss_pred             --cC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEecc-CC------------------------
Q 041916          101 --HQ-------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTLP-GH------------------------  143 (359)
Q Consensus       101 --h~-------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~-~~------------------------  143 (359)
                        |.       .+.....+..+|.   .++.++.+|.++++|..+++.+...+ ..                        
T Consensus       289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  368 (668)
T 1kv9_A          289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK  368 (668)
T ss_dssp             STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred             CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence              22       2222223334665   68889999999999999998773320 00                        


Q ss_pred             --------------ceeEEEcCCc--eEEEE------------------------------------cCCcEEEEcCCCC
Q 041916          144 --------------AKTLDFSQKG--LLAVG------------------------------------TGSFVQILGDFSG  171 (359)
Q Consensus       144 --------------i~~~~~s~~g--l~~~~------------------------------------~d~~i~i~d~~~~  171 (359)
                                    -..++++|+.  +++..                                    .+|.|..||+.++
T Consensus       369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG  448 (668)
T 1kv9_A          369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ  448 (668)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred             CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence                          0126777765  33211                                    1267888998777


Q ss_pred             CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916          172 SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE  219 (359)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d  219 (359)
                      . ..-......     +.....+...+.++++++.+|.+..|...++.
T Consensus       449 ~-~~W~~~~~~-----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          449 K-AAWKVPYPT-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             E-EEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             c-EEEEccCCC-----CCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            3 332222221     33444556678889999999988887765443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.51  E-value=1.6e-05  Score=75.65  Aligned_cols=174  Identities=10%  Similarity=-0.043  Sum_probs=110.6

Q ss_pred             EEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCCC---------CeEEEEEc-CCC---C
Q 041916           23 KLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGLG---------RTDVMRVN-PFN---G   73 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~s-p~~---~   73 (359)
                      .+++.+...+++.+..+                +.|..+|..+|+.+..++....         ...-+... .+|   .
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            46777777777777654                4899999999999988875321         11112222 466   4


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccC------------C-Ce--------------------------EEEEEcCCC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQ------------G-PV--------------------------SALAFHPNG  114 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~------------~-~v--------------------------~~i~~~~~~  114 (359)
                      .++.++.+|.++++|..+++.+.......            + ++                          ..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            67788999999999999998876654211            0 11                          245677776


Q ss_pred             CEEEEEe---------------------------------------CCCeEEEEEcCCceeeEecc--CCce-eEEEcCC
Q 041916          115 HLMATSG---------------------------------------KECKIKIWDLRKYEVLQTLP--GHAK-TLDFSQK  152 (359)
Q Consensus       115 ~~l~~~~---------------------------------------~d~~i~iwd~~~~~~~~~~~--~~i~-~~~~s~~  152 (359)
                      .++++..                                       .+|.|..||+.+++.+...+  .+.. .......
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag  484 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG  484 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecC
Confidence            6655431                                       34789999999998877762  2222 2122234


Q ss_pred             c-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE
Q 041916          153 G-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       153 g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  200 (359)
                      + +++++.|+.|+.||..++ +.+-.+.....   ....-+.|..+|+.
T Consensus       485 g~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g---~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          485 DLVFYGTLDGYLKARDSDTG-DLLWKFKIPSG---AIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEE
T ss_pred             CEEEEECCCCeEEEEECCCC-CEEEEeeCCCC---cEeccEEEEeCCEE
Confidence            5 677788999999998887 44443332211   11222455667753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.51  E-value=2.1e-05  Score=74.80  Aligned_cols=136  Identities=10%  Similarity=-0.036  Sum_probs=88.1

Q ss_pred             eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCCCC------
Q 041916            2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGLGR------   62 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~------   62 (359)
                      |+.+| .+|+++..+....     .+ .+.... ++ .+++++.      ++.|..+|..+|+.+..+......      
T Consensus       127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~  204 (571)
T 2ad6_A          127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             EEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccC
Confidence            56678 7888877655332     12 111121 34 4555554      789999999999999887643211      


Q ss_pred             --------------------------------eEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcc
Q 041916           63 --------------------------------TDVMRVNPFNGVVSLGHSG----------------GTVTMWKPTTAAP   94 (359)
Q Consensus        63 --------------------------------v~~~~~sp~~~~l~sg~~d----------------g~v~lwd~~~~~~   94 (359)
                                                      ...+++.+....++.++.+                +.|..+|+.+++.
T Consensus       205 p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~  284 (571)
T 2ad6_A          205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             cccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence                                            0135666766677666532                3699999999998


Q ss_pred             eEEEecc--C--------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEec
Q 041916           95 LIKMLCH--Q--------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        95 ~~~~~~h--~--------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      +..++..  .        .++. +...++|+   .++.++.+|.+.++|..+++.+..+
T Consensus       285 ~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          285 KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            8877632  1        2221 22224674   5778889999999999999877654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=1.6e-05  Score=75.76  Aligned_cols=175  Identities=7%  Similarity=-0.020  Sum_probs=110.6

Q ss_pred             EEEEEecCCCEEEEEec--------------------C----CeEEEEECCCCeEEEEEec--CC--------CCeEEEE
Q 041916           22 LKLQFLRNHFLLASINK--------------------F----GQLRYQDVTMGEIVGNFRT--GL--------GRTDVMR   67 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~--------------------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~   67 (359)
                      ..+++.|...+++.+..                    |    +.|..+|..+|+.+..++.  |.        .++. +.
T Consensus       249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~  327 (582)
T 1flg_A          249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD  327 (582)
T ss_dssp             SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred             CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence            34677787777776653                    2    6899999999999988864  21        1221 22


Q ss_pred             Ec-CCCC---EEEEEeCCCeEEEEeCCCCcceEEEeccCC-------------C--------------------------
Q 041916           68 VN-PFNG---VVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-------------P--------------------------  104 (359)
Q Consensus        68 ~s-p~~~---~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-------------~--------------------------  104 (359)
                      .. .+|+   .++.++.+|.++++|..+++.+..+.....             +                          
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence            21 4663   788899999999999999988766543210             0                          


Q ss_pred             ------eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEcCCceeeEecc--CC
Q 041916          105 ------VSALAFHPNGHLMATSG---------------------------------KECKIKIWDLRKYEVLQTLP--GH  143 (359)
Q Consensus       105 ------v~~i~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~--~~  143 (359)
                            -..++++|+..++++..                                 .+|.|..||+.+++.+..++  .+
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~  487 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP  487 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence                  01356677655555432                                 25789999999999877662  22


Q ss_pred             cee-EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          144 AKT-LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       144 i~~-~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                      +.. ......+ +++++.|+.|+.||..++ +.+-.+.....   ..-.-+.|..+|+..
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g---~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSG---IVSPPITWEQDGEQY  543 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEEE
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCCC---cccCceEEEECCEEE
Confidence            222 1122355 677788999999998887 44444433221   111225566777643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.46  E-value=6.2e-05  Score=63.34  Aligned_cols=165  Identities=10%  Similarity=0.090  Sum_probs=109.3

Q ss_pred             eEEEeCCCcEEEEe--ccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEEEe------cCCCCeEEEEEcC
Q 041916            2 PYIYNRDGTELHCL--KEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGNFR------TGLGRTDVMRVNP   70 (359)
Q Consensus         2 v~iwd~~g~~~~~l--~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~sp   70 (359)
                      |+..|.+|..+..+  .+..+.-.+++.+++.++++.-.++.+.++++.....   +....      ..+...-.|+|+|
T Consensus        51 I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~  130 (255)
T 3qqz_A           51 IVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR  130 (255)
T ss_dssp             EEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET
T ss_pred             EEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC
Confidence            45667568877776  3445668899999988777766678999998865432   23332      1233468999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCC---CCcceEEEe-------ccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           71 FNGVVSLGHSGGTVTMWKPT---TAAPLIKML-------CHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~---~~~~~~~~~-------~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      .+..|+++.......+|.+.   ....+..+.       .+...+.+++++|.. ++++.......|..+|.. ++++..
T Consensus       131 ~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~  209 (255)
T 3qqz_A          131 QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGE  209 (255)
T ss_dssp             TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEE
T ss_pred             CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEE
Confidence            98776666655455555443   111222221       123357899999954 455556667889999976 455544


Q ss_pred             c--c-C---------CceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916          140 L--P-G---------HAKTLDFSQKG-LLAVGTGSFVQILG  167 (359)
Q Consensus       140 ~--~-~---------~i~~~~~s~~g-l~~~~~d~~i~i~d  167 (359)
                      +  . +         ....|+|.++| ++.++..+.++.|.
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence            4  2 1         45889999999 88888888888775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.42  E-value=0.00098  Score=60.27  Aligned_cols=197  Identities=10%  Similarity=-0.045  Sum_probs=117.0

Q ss_pred             EeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 041916           14 CLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMW   87 (359)
Q Consensus        14 ~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lw   87 (359)
                      .+.....+..|+|++.+..|+.+ ...+.|..+++...    .....+......+..+++.+. +.++++-...+.|.+.
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~  186 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA  186 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence            34444556999999866555554 45688999998752    223333334456789999884 4555566677899999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEE-c
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVG-T  159 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~-~  159 (359)
                      ++........+...-.....|+++|.+.+|+.+..  .+.|...++..........   .....|+++|++  ++.+. .
T Consensus       187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence            98755443333333445789999997767666553  3689988887543322222   356899999866  55554 4


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+.|..+|+...  ....+..... ......++++ ..+.++.+....+.+..+.
T Consensus       267 ~~~I~~~d~dG~--~~~~~~~~~~-~l~~P~gl~v-~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          267 LHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAV-FEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             TTEEEEEETTSC--CCEEEEECSS-TTSSEEEEEE-ETTEEEEEESSSCSEEEEE
T ss_pred             CCEEEEEeCCCC--ccEEEEeCCC-CCCCCEEEEE-eCCEEEEecCCCCeEEEEE
Confidence            578999996432  2222222110 1113456666 2334444444445444444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.40  E-value=5.1e-05  Score=72.26  Aligned_cols=136  Identities=12%  Similarity=0.052  Sum_probs=88.7

Q ss_pred             eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecCCCEEEEEe------cCCeEEEEECCCCeEEEEEecCCCCe-----
Q 041916            2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRNHFLLASIN------KFGQLRYQDVTMGEIVGNFRTGLGRT-----   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v-----   63 (359)
                      |+-+| .+|+++.......     .+ ....+. ++ .+++++      .+|.|+-+|..+|+.+..+.......     
T Consensus       133 l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          133 VAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             EEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence            45567 6788776654332     22 111221 44 445444      37999999999999998876432110     


Q ss_pred             ---------------------------------EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcc
Q 041916           64 ---------------------------------DVMRVNPFNGVVSLGHSG----------------GTVTMWKPTTAAP   94 (359)
Q Consensus        64 ---------------------------------~~~~~sp~~~~l~sg~~d----------------g~v~lwd~~~~~~   94 (359)
                                                       ..+++.+...+++.++.+                +.|..+|+.+++.
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~  290 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA  290 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence                                             134566777777777665                3899999999998


Q ss_pred             eEEEeccC----------CCeEEEEEc-CCC---CEEEEEeCCCeEEEEEcCCceeeEec
Q 041916           95 LIKMLCHQ----------GPVSALAFH-PNG---HLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        95 ~~~~~~h~----------~~v~~i~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      +..++...          .++. +... .+|   ..++.++.+|.+.++|..+++++...
T Consensus       291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            88776322          1221 2222 467   46777889999999999999877654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.40  E-value=0.00027  Score=69.94  Aligned_cols=180  Identities=6%  Similarity=-0.018  Sum_probs=118.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      +.++...+++.+|..|+.++-|.+||..+++......    .+...|.++...++|.+.+.. .+| |.+||..++... 
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~-  484 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFT-  484 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEE-
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEE-
Confidence            5888888888856667776779999998876543221    123578999988888866654 454 888998776432 


Q ss_pred             EEec-------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-------c-cCCceeEEEcCCc-eEEEEcC
Q 041916           97 KMLC-------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-------L-PGHAKTLDFSQKG-LLAVGTG  160 (359)
Q Consensus        97 ~~~~-------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------~-~~~i~~~~~s~~g-l~~~~~d  160 (359)
                      .+..       ....|.++..+++|.+.+...  +-|..||..++.....       + ...|.++...++| +.+++.+
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~  562 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE  562 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred             EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence            2211       235789999999998666544  4588899877654111       1 2357889999999 6666655


Q ss_pred             CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                       -|..||..+.  ....+....+.+...|.++...++|.+.+++ ..|.
T Consensus       563 -Gl~~~d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl  607 (795)
T 4a2l_A          563 -GFYCFNEKDK--QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRGI  607 (795)
T ss_dssp             -CEEEEETTTT--EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred             -CceeECCCCC--cEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCce
Confidence             6888886543  2333332222244468888888888766554 4554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.33  E-value=0.00019  Score=68.34  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=88.3

Q ss_pred             eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecC---CC-EEEEEe------cCCeEEEEECCCCeEEEEEecCCCCe-
Q 041916            2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRN---HF-LLASIN------KFGQLRYQDVTMGEIVGNFRTGLGRT-   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~---~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v-   63 (359)
                      |+-+| .+|+++-.+....     .+ ....+..+   ++ .+++++      .++.|.-+|..+|+.+.........+ 
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~  208 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMG  208 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccc
Confidence            55677 7888876665432     11 11122222   33 555554      37899999999999888765321000 


Q ss_pred             ----------------------------------------EEEEEcCCCCEEEEEeC--------------------C--
Q 041916           64 ----------------------------------------DVMRVNPFNGVVSLGHS--------------------G--   81 (359)
Q Consensus        64 ----------------------------------------~~~~~sp~~~~l~sg~~--------------------d--   81 (359)
                                                              ..+++.|...+++.+..                    |  
T Consensus       209 p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~  288 (582)
T 1flg_A          209 RLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSL  288 (582)
T ss_dssp             EETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCT
T ss_pred             cccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCc
Confidence                                                    13456676677776653                    2  


Q ss_pred             --CeEEEEeCCCCcceEEEec--cC--------CCeEEEEEc-CCCC---EEEEEeCCCeEEEEEcCCceeeEec
Q 041916           82 --GTVTMWKPTTAAPLIKMLC--HQ--------GPVSALAFH-PNGH---LMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        82 --g~v~lwd~~~~~~~~~~~~--h~--------~~v~~i~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                        +.|..+|+.+++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+++.+..+
T Consensus       289 ~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          289 YTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             TCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence              6899999999999888763  32        1221 1222 4674   6888999999999999999877554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.33  E-value=0.00033  Score=64.03  Aligned_cols=129  Identities=11%  Similarity=0.027  Sum_probs=81.5

Q ss_pred             eEEEeCCCcEEEEe-ccCCCeEEEEEecCCCEEEEEec-CC----eEEEEECCCCeEE--EEEecCCCCeEEEEEcC-CC
Q 041916            2 PYIYNRDGTELHCL-KEHGAVLKLQFLRNHFLLASINK-FG----QLRYQDVTMGEIV--GNFRTGLGRTDVMRVNP-FN   72 (359)
Q Consensus         2 v~iwd~~g~~~~~l-~~h~~~~~l~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp-~~   72 (359)
                      |+.+|..+..+..+ .....+..++|++++++|+++.. ++    .+.+++.. +...  ..+.. ......++++| ++
T Consensus       161 I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g  238 (430)
T 3tc9_A          161 TRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPING  238 (430)
T ss_dssp             EEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTC
T ss_pred             EEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCC
Confidence            56777555444444 33344699999999996666554 11    34445533 3221  22322 23467899999 67


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATS-GKECKIKIWDLR  132 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~  132 (359)
                      .++++-..++.|..+++..+........ .....+.|+|+|+|++|+.+ ...+.|..+|..
T Consensus       239 ~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          239 ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            7777777788999999886643222221 12345789999999965555 467889998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.32  E-value=0.0008  Score=58.36  Aligned_cols=148  Identities=9%  Similarity=0.037  Sum_probs=104.1

Q ss_pred             EEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEecC-----C--CCeEEEEE---cCCCCEEEEEe-----------
Q 041916           22 LKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTG-----L--GRTDVMRV---NPFNGVVSLGH-----------   79 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----~--~~v~~~~~---sp~~~~l~sg~-----------   79 (359)
                      -++.|.+....|..++ ..++|..||...+......-..     .  ..+..|.|   .|++.++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            7899998655555555 6899999999866443332211     1  13579999   68887877644           


Q ss_pred             --CCCeEEEEeCC---CCcceEEEe--cc-----------CCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcCCceeeEec
Q 041916           80 --SGGTVTMWKPT---TAAPLIKML--CH-----------QGPVSALAFHPNGHLMATSGKE-CKIKIWDLRKYEVLQTL  140 (359)
Q Consensus        80 --~dg~v~lwd~~---~~~~~~~~~--~h-----------~~~v~~i~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~  140 (359)
                        .+..|..||+.   +++.+....  ..           ......+++.++|+..++++.. +.|..+|.... .+..+
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence              26779999999   787766554  11           1247899999999999998888 88887777643 22222


Q ss_pred             ---c------CCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916          141 ---P------GHAKTLDFSQKG--LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       141 ---~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~  170 (359)
                         .      ...+.|+++|+|  |++...++.|..+|+..
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence               1      125799999999  55555689999999763

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.30  E-value=0.00018  Score=65.82  Aligned_cols=208  Identities=10%  Similarity=0.006  Sum_probs=116.8

Q ss_pred             eEEEeC-CCcEEEEeccCCCeEEEEEecCCCEEEEEecC---C-eEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCE
Q 041916            2 PYIYNR-DGTELHCLKEHGAVLKLQFLRNHFLLASINKF---G-QLRYQDVTMGEI-VGNFRTGLGRTDVMRVNP-FNGV   74 (359)
Q Consensus         2 v~iwd~-~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---g-~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~   74 (359)
                      |+.+|. +|.....+.....+.+++|+++|.++++....   . .+..++...+.. ...+. .......++++| ++.+
T Consensus       164 I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~l  242 (433)
T 4hw6_A          164 FRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKI  242 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCE
T ss_pred             EEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeE
Confidence            667784 55554444444446999999999944443311   1 233333322211 01222 234467789999 6777


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC--Ccee--eEec-------
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR--KYEV--LQTL-------  140 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~-------  140 (359)
                      +++-..++.|..+|+.++.....+.  +....-..|+|+|+|++|+.+. ..+.|..+|..  ++..  ...+       
T Consensus       243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~  322 (433)
T 4hw6_A          243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP  322 (433)
T ss_dssp             EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC
Confidence            6666678899999998776523322  1122234699999999665554 56789998865  2211  1111       


Q ss_pred             -----------cCCceeEEE---------cCCc-eEEEEc-CCcEEEEcCCCCCCccceeecccC------C--------
Q 041916          141 -----------PGHAKTLDF---------SQKG-LLAVGT-GSFVQILGDFSGSHNYSRYMGHSM------V--------  184 (359)
Q Consensus       141 -----------~~~i~~~~~---------s~~g-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~--------  184 (359)
                                 -.....+++         .++| ++++.. .+.|+.++. .+  .+..+.+...      .        
T Consensus       323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G--~v~t~~G~g~~~~~G~~dG~~~~~~  399 (433)
T 4hw6_A          323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG--RVTTYAGRGNSREWGYVDGELRSQA  399 (433)
T ss_dssp             CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS--EEEEEECCCTTCSSCCBCEETTTTC
T ss_pred             ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC--CEEEEEeCCCCCccccCCCcccccc
Confidence                       012567898         7777 666554 468888883 33  2222222100      0        


Q ss_pred             CCcceEEEEEe-eCCCEEEEEcCCCeEEEE
Q 041916          185 KGYQIGKVSFR-PYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       185 ~~~~v~~~~~~-p~~~~l~~~~~dg~~~i~  213 (359)
                      .-.....|+++ +++.++++-..+..++.+
T Consensus       400 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          400 LFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             BCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            01236788998 566555544444444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.30  E-value=0.00013  Score=66.69  Aligned_cols=147  Identities=12%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             eEEEEEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---C-eEEEEeCCCCcc
Q 041916           21 VLKLQFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG---G-TVTMWKPTTAAP   94 (359)
Q Consensus        21 ~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d---g-~v~lwd~~~~~~   94 (359)
                      +..++|+|+  +..|+.+...+.|+.+|+.++..... ......+.+++|+++|.++++...+   . .+...+...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            489999984  44455555448999999987775543 3345568999999999955544321   1 233344322211


Q ss_pred             -eEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----c-CCceeEEEcCCc--eEEEE-cCCcEE
Q 041916           95 -LIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----P-GHAKTLDFSQKG--LLAVG-TGSFVQ  164 (359)
Q Consensus        95 -~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~-~~i~~~~~s~~g--l~~~~-~d~~i~  164 (359)
                       ...+. .-.....++++| +|.++++-..++.|+.+|..++.....+    . .....++|+|+|  ++.+. ..+.|.
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence             11222 223346789999 6766666667789999999876652222    1 123569999999  55554 457888


Q ss_pred             EEcCC
Q 041916          165 ILGDF  169 (359)
Q Consensus       165 i~d~~  169 (359)
                      .++..
T Consensus       299 ~~~~d  303 (433)
T 4hw6_A          299 RVDYN  303 (433)
T ss_dssp             EEEBC
T ss_pred             EEeCC
Confidence            87743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.30  E-value=0.00077  Score=66.70  Aligned_cols=182  Identities=13%  Similarity=0.055  Sum_probs=119.0

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-------GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA   93 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~   93 (359)
                      +.++...++|.+- .|+.++-|.+|+..++... .+..       ....|.++...++|.+.+ |+.++-|..||..++.
T Consensus       312 i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~  388 (795)
T 4a2l_A          312 VRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQR  388 (795)
T ss_dssp             EEEEEECTTSCEE-EEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCC
T ss_pred             EEEEEEeCCcCEE-EEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCc
Confidence            5888888888754 4666677889987655432 2221       234689999988887655 6677669999987664


Q ss_pred             ceEEEec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cCCceeEEEcCCc-eEEE
Q 041916           94 PLIKMLC--------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PGHAKTLDFSQKG-LLAV  157 (359)
Q Consensus        94 ~~~~~~~--------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~s~~g-l~~~  157 (359)
                      .......        ....|.++...++|..|..|+.++-|.+||..+++...-.       ...|.++...++| +.++
T Consensus       389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred             EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence            3222111        2357899999999985667777778999999876543321       2357889888888 7777


Q ss_pred             EcCCcEEEEcCCCCCCccceeecc---cCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          158 GTGSFVQILGDFSGSHNYSRYMGH---SMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      +. +-|.+||..++  ....+...   .......|.++...++|.+.+... .|.
T Consensus       469 t~-~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl  519 (795)
T 4a2l_A          469 TL-SALVRFNPEQR--SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL  519 (795)
T ss_dssp             ES-SCEEEEETTTT--EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred             ec-CceeEEeCCCC--eEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence            76 56888986544  12222111   000223688888888887665544 553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00046  Score=68.20  Aligned_cols=183  Identities=13%  Similarity=0.035  Sum_probs=117.6

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      +.++...+++.+.+ |+.++-|..+|..+++......  .....|.++...+++.+.+ |+. +-|.+||..++......
T Consensus       409 v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          409 VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             EEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEE
T ss_pred             eEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecc
Confidence            47787777777555 5666678999988776433221  1345788999888876555 444 45889998876543332


Q ss_pred             ecc-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916           99 LCH-----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LLAVGTGSFVQIL  166 (359)
Q Consensus        99 ~~h-----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~~~~~d~~i~i~  166 (359)
                      ...     ...|.++...++|.+.+. +.++-|..||..+.+...-.      ...|.++...++| +..++.+|.+..|
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~  564 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFP  564 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEES
T ss_pred             cCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEE
Confidence            222     357899999999886554 44334788998766533221      2357889999999 7777776655889


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS  210 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~  210 (359)
                      |..++  ....+....+.+...|.++...++|.+.++ +.+|..
T Consensus       565 d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~  605 (781)
T 3v9f_A          565 SARNF--DYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGIS  605 (781)
T ss_dssp             CTTTC--CCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEE
T ss_pred             CCCCC--cEEEccccCCCCCceEEEEEECCCCCEEEE-cCCceE
Confidence            86554  233333222223446888888888875544 566643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.24  E-value=8.9e-05  Score=67.85  Aligned_cols=147  Identities=16%  Similarity=0.146  Sum_probs=96.3

Q ss_pred             CeEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCc
Q 041916           20 AVLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GG----TVTMWKPTTAA   93 (359)
Q Consensus        20 ~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg----~v~lwd~~~~~   93 (359)
                      .+..|+|+| ++..|+++...+.|+.+|+.++... .+.........++|+++++.|+++.. ++    .+.+++.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            358899998 4555666655588999999876644 33335566889999999995555543 22    34444432 32


Q ss_pred             ce--EEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee--eEecc--CCceeEEEcCCc--eEEEE-cCCcE
Q 041916           94 PL--IKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV--LQTLP--GHAKTLDFSQKG--LLAVG-TGSFV  163 (359)
Q Consensus        94 ~~--~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~i~~~~~s~~g--l~~~~-~d~~i  163 (359)
                      ..  ..+.. .....+++++| +|.++++-..++.|..||..++..  +....  .....++|+|+|  ++.+. ..+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            22  23322 23356789999 677666666778999999987654  22222  347899999999  45554 45788


Q ss_pred             EEEcCC
Q 041916          164 QILGDF  169 (359)
Q Consensus       164 ~i~d~~  169 (359)
                      ..++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            888743

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.22  E-value=0.0022  Score=55.96  Aligned_cols=190  Identities=10%  Similarity=-0.037  Sum_probs=115.0

Q ss_pred             CeEEEEEecCCCEE-EEEecCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceE
Q 041916           20 AVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        20 ~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      .+..++|++.+..| .+-...+.|..+++..+.. ...+......+..+++.+.+ .++++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            34788999865444 4444578899999876532 22233333456789998754 555555667899999987543333


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVG-TGSFVQILGD  168 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~-~d~~i~i~d~  168 (359)
                      .+.........|+++|.+..|+.+..  .+.|..+++..........   .....|+++|++  ++.+. ..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            33234455789999997667666653  5788888886432222222   246899999865  55554 4578999986


Q ss_pred             CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ...  ....+...   .......+++. .+.++.+-...+.+..+..
T Consensus       196 dG~--~~~~~~~~---~~~~P~glav~-~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          196 DGT--NRQAVVKG---SLPHPFALTLF-EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             TSC--SCEEEECS---CCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CCC--ceEEEecC---CCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence            432  22222221   11245667765 3344445555555555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.18  E-value=0.00078  Score=58.94  Aligned_cols=165  Identities=12%  Similarity=0.136  Sum_probs=109.9

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecC----CC---EEEEEe-c--CCeEEEEEC--CCCeEEEEEec-------CCCC
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRN----HF---LLASIN-K--FGQLRYQDV--TMGEIVGNFRT-------GLGR   62 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~----~~---~l~s~~-~--dg~i~iwd~--~~~~~~~~~~~-------~~~~   62 (359)
                      +++||.+|+++..+.. ..++.+..-|+    |.   ++++.. .  +++|.+|++  .++. +..+..       ....
T Consensus        52 L~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~  129 (355)
T 3amr_A           52 LVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINE  129 (355)
T ss_dssp             EEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSS
T ss_pred             EEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCC
Confidence            6899999999999875 34455655552    32   223333 3  579999977  3443 444421       1144


Q ss_pred             eEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC---C----CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916           63 TDVMRV--NPF-NG-VVSLGHSGGTVTMWKPT---T----AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus        63 v~~~~~--sp~-~~-~l~sg~~dg~v~lwd~~---~----~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                      +..+|+  +|. +. ++++...+|.+..|++.   .    .+.+.+|.. .+.+..+++.+....|+.+-++.-|..||.
T Consensus       130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da  208 (355)
T 3amr_A          130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSA  208 (355)
T ss_dssp             CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred             eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence            566777  774 43 67788889999999883   2    244566653 457889999998899999999988888886


Q ss_pred             C-----CceeeEec-----cCCceeEEE--cCCc---eEEEE-cCCcEEEEcCC
Q 041916          132 R-----KYEVLQTL-----PGHAKTLDF--SQKG---LLAVG-TGSFVQILGDF  169 (359)
Q Consensus       132 ~-----~~~~~~~~-----~~~i~~~~~--s~~g---l~~~~-~d~~i~i~d~~  169 (359)
                      .     +++.+..+     ...+..|++  .++|   +++++ .++.+.+||..
T Consensus       209 ~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          209 EPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             STTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            5     34555554     235677777  4443   55555 45799999964

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.16  E-value=0.0047  Score=60.71  Aligned_cols=156  Identities=11%  Similarity=-0.001  Sum_probs=100.0

Q ss_pred             eccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 041916           15 LKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWK   88 (359)
Q Consensus        15 l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd   88 (359)
                      +.....+..|+|++....| ++-...+.|+.+++...    .....+......+..|++.+.+. ++++-...+.|.+.+
T Consensus       420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence            3444556899999865444 44445678999998742    22333443455678899998774 555556778999999


Q ss_pred             CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-C
Q 041916           89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-G  160 (359)
Q Consensus        89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d  160 (359)
                      +........+...-.....|+++|.+.+|+.+..  .+.|...++........+.   ..+..|++++.+  |+.+.. .
T Consensus       500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~  579 (791)
T 3m0c_C          500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  579 (791)
T ss_dssp             TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence            8754333333334445789999998667666653  2689998887543333232   357899999765  555543 4


Q ss_pred             CcEEEEcCCC
Q 041916          161 SFVQILGDFS  170 (359)
Q Consensus       161 ~~i~i~d~~~  170 (359)
                      +.|..+++..
T Consensus       580 ~~I~~~d~dG  589 (791)
T 3m0c_C          580 HSISSIDVNG  589 (791)
T ss_dssp             TEEEEEETTS
T ss_pred             CcEEEEecCC
Confidence            6899998643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=0.0015  Score=58.76  Aligned_cols=151  Identities=12%  Similarity=0.035  Sum_probs=94.9

Q ss_pred             eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-SG-GTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~d-g~v~lwd~~~~~~~~~   97 (359)
                      +..+++.+.+. ++++-...+.|.+.++........+.........+++.|.+..|+.+. .. +.|..+++........
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  240 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  240 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            47889987554 445545567899988875443333444446689999999766555443 44 6888888764433322


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~  171 (359)
                      ....-...+.|+|+|++..|+.+. ..+.|..+|+........+   ...+..|++..+.++.+. ..+.|..++..++
T Consensus       241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            223334468999998777766654 5678999998753322222   235677888444444444 4578888875455

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.07  E-value=0.0038  Score=54.69  Aligned_cols=180  Identities=17%  Similarity=0.164  Sum_probs=102.6

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP--TTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~--~~~~~~~~   97 (359)
                      ...+.+.+++..++++. +|.|.. ..+.|+.-..+ ......+..+++.|++.+++++...+..+-+|-  .+.+.+. 
T Consensus       124 ~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-  200 (327)
T 2xbg_A          124 PRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-  200 (327)
T ss_dssp             EEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-
T ss_pred             eEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-
Confidence            37788777777666654 554422 22334322222 234557889999999888877654444444442  2222221 


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--c-----CCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--P-----GHAKTLDFSQKG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~  169 (359)
                       ......+..+++.+++..+ .++.+|.+.+.+...+..-..+  +     ..+.++.+.+++ +++++.++.|.. ...
T Consensus       201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~-S~D  277 (327)
T 2xbg_A          201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC-SQD  277 (327)
T ss_dssp             -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE-ESS
T ss_pred             -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEE-eCC
Confidence             2345678899999988765 4556788887753323322222  1     236788899888 888888887743 322


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      .+ .....+..... ....+.++.|.+++. +++++.+|.
T Consensus       278 gG-~tW~~~~~~~~-~~~~~~~v~~~~~~~-~~~~G~~G~  314 (327)
T 2xbg_A          278 GG-QTWQQDVDVKK-VPSNFYKILFFSPDQ-GFILGQKGI  314 (327)
T ss_dssp             TT-SSCEECGGGTT-SSSCCCEEEEEETTE-EEEECSTTE
T ss_pred             CC-cccEEcCccCC-CCCCeEEEEEECCCc-eEEEcCCce
Confidence            23 33333322100 112578899987655 445556663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=0.0011  Score=65.49  Aligned_cols=181  Identities=9%  Similarity=-0.051  Sum_probs=115.2

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      +.++...++|.+. .|+.++-|.+||..++......   ......|.++...+++.+.+ |+.++-|..+|..+++. ..
T Consensus       365 v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~  441 (781)
T 3v9f_A          365 VSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-QI  441 (781)
T ss_dssp             EEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-EE
T ss_pred             eEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-EE
Confidence            4788887777654 4555566889998755432111   12335688998888877655 66666788999876643 22


Q ss_pred             Ee---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------cCCceeEEEcCCc-eEEEEcCCcEEE
Q 041916           98 ML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------PGHAKTLDFSQKG-LLAVGTGSFVQI  165 (359)
Q Consensus        98 ~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~i~~~~~s~~g-l~~~~~d~~i~i  165 (359)
                      +.   .....|.++...++|.+.+ |+. +-|..||..+++.....        ...|.++...++| +.+++.++-|..
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~  519 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGI  519 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEE
T ss_pred             eccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEE
Confidence            22   1345789999988886544 455 56899998875432221        2457889999999 777777566888


Q ss_pred             EcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916          166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW  209 (359)
Q Consensus       166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~  209 (359)
                      ||..++  ....+......+...|.++...++|.+.+... +|.
T Consensus       520 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl  560 (781)
T 3v9f_A          520 YTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL  560 (781)
T ss_dssp             ECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred             EeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence            986443  22223221111344688998888887655443 654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.06  E-value=0.0018  Score=57.32  Aligned_cols=150  Identities=11%  Similarity=0.027  Sum_probs=94.3

Q ss_pred             eEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-LGHSG-GTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-sg~~d-g~v~lwd~~~~~~~~~   97 (359)
                      +..+++.+.+ .+.++-...+.|.+.++........+.........++++|.+..|+ +-..+ +.|..+++... ....
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~  196 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRI  196 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEE
Confidence            4789999855 4445555578999999875443333334445678999999665544 44444 78998887643 3333


Q ss_pred             E-eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916           98 M-LCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus        98 ~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~  171 (359)
                      + ...-...+.|+|+|++..|+.+. ..+.|..+|+........+   -..+..+++..+.++.+. ..+.|..++..++
T Consensus       197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            3 22233468999999777766654 5678999998753322222   235677777444454444 4577888874454

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.06  E-value=0.0062  Score=54.95  Aligned_cols=152  Identities=11%  Similarity=-0.013  Sum_probs=98.1

Q ss_pred             CeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceE
Q 041916           20 AVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLI   96 (359)
Q Consensus        20 ~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~   96 (359)
                      .+..+++.+. +.+.++-...+.|.+.++........+.........|++.|.+..|+....  .+.|...++.......
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            3478999884 455555556789999998765544444444556889999997666555542  3778888886443333


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec-----cCCceeEEEcCCceEEEE-cCCcEEEEcCC
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKGLLAVG-TGSFVQILGDF  169 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~  169 (359)
                      .+...-...+.|+++|++..|+.+. ..+.|..+|+.........     -.....|++..+.++.+. ..+.|..+|..
T Consensus       240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred             EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence            3333334678999999887777764 4678999998754322111     134567777555544444 45788888855


Q ss_pred             CC
Q 041916          170 SG  171 (359)
Q Consensus       170 ~~  171 (359)
                      ++
T Consensus       320 ~G  321 (400)
T 3p5b_L          320 TG  321 (400)
T ss_dssp             SC
T ss_pred             CC
Confidence            55

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.04  E-value=0.00053  Score=59.50  Aligned_cols=158  Identities=12%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEEecc-----CC--CeEEEEE---cCCCCEEEEEe---
Q 041916           56 FRTGLGRTDVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAPLIKMLCH-----QG--PVSALAF---HPNGHLMATSG---  121 (359)
Q Consensus        56 ~~~~~~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~~h-----~~--~v~~i~~---~~~~~~l~~~~---  121 (359)
                      +.......-+++|++....|..++ ..|+|..||+..+.........     ..  .+..|.|   .|+++++++..   
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            334445567899988655555555 7999999999755433322211     11  3579999   68877777543   


Q ss_pred             ----------CCCeEEEEEcC---CceeeEec------cC----------CceeEEEcCCc--eEEEEcC-CcEEEEcCC
Q 041916          122 ----------KECKIKIWDLR---KYEVLQTL------PG----------HAKTLDFSQKG--LLAVGTG-SFVQILGDF  169 (359)
Q Consensus       122 ----------~d~~i~iwd~~---~~~~~~~~------~~----------~i~~~~~s~~g--l~~~~~d-~~i~i~d~~  169 (359)
                                .+..|..||+.   +++.+...      .+          .+..++..++|  +++.+.. +.|..++..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      26789999999   77765443      11          36899999999  6667777 888888743


Q ss_pred             CCCCccceeeccc--CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          170 SGSHNYSRYMGHS--MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       170 ~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                       + .....+....  .......+.|+++|+|..|++....|.+..+..
T Consensus       168 -G-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          168 -G-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             -S-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             -C-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence             3 2233222111  001224779999999998888777775555543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.03  E-value=0.0018  Score=56.71  Aligned_cols=179  Identities=12%  Similarity=0.128  Sum_probs=108.0

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEeC--CCCcceEE
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF----NG---VVSLGHS---GGTVTMWKP--TTAAPLIK   97 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~---~l~sg~~---dg~v~lwd~--~~~~~~~~   97 (359)
                      ..+++.....+-|.+||+ +|+.+..+..  +.++.+..-|+    |.   ++++...   +++|.+|++  .++ .+..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence            355666667789999999 7998888864  56777776663    22   2333333   578999966  333 3444


Q ss_pred             Eec------cC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEEcC-------CceeeEec--cCCceeEEEcCCc--eE
Q 041916           98 MLC------HQ-GPVSALAF--HPN-GH-LMATSGKECKIKIWDLR-------KYEVLQTL--PGHAKTLDFSQKG--LL  155 (359)
Q Consensus        98 ~~~------h~-~~v~~i~~--~~~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~--~~~i~~~~~s~~g--l~  155 (359)
                      +..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.+++|  .+.+..|...+..  ++
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      11 44566777  774 44 67888889999999983       34667777  5677888888755  77


Q ss_pred             EEEcCCcEEEEcCCCCC----CccceeecccCCCCcceEEEEEe--eCCC-EEEEEcC-CCeEEEEE
Q 041916          156 AVGTGSFVQILGDFSGS----HNYSRYMGHSMVKGYQIGKVSFR--PYED-VLGIGHS-MGWSSILV  214 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~~~~~--p~~~-~l~~~~~-dg~~~i~~  214 (359)
                      ++-.+.-|..|+.....    ..+..+. ... ....+..++..  ++++ +|++++. ++...+|.
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRH-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBS-SSS-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEec-CCc-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            77777667667633211    1222221 110 12357778774  4555 5555443 33444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.99  E-value=0.00015  Score=71.24  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=71.5

Q ss_pred             CeEEEEEc-CCCCEEEEEeC-C----CeEEEEeCCCC-cceE-EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 041916           62 RTDVMRVN-PFNGVVSLGHS-G----GTVTMWKPTTA-APLI-KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKI  128 (359)
Q Consensus        62 ~v~~~~~s-p~~~~l~sg~~-d----g~v~lwd~~~~-~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~i  128 (359)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +.+. .+..   ...+++|+|||+.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99998775543 3    35999999988 6321 1211   13468999999988777665     36888


Q ss_pred             EEcCCce----eeEecc--CCceeEEEcCCc--eEEEEc---CCcEEEEcCCCC
Q 041916          129 WDLRKYE----VLQTLP--GHAKTLDFSQKG--LLAVGT---GSFVQILGDFSG  171 (359)
Q Consensus       129 wd~~~~~----~~~~~~--~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~  171 (359)
                      +++.++.    .+....  .....+.|||||  ++..+.   ...|.++|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            8987753    222222  235678999999  333332   346888887654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=0.0064  Score=56.11  Aligned_cols=130  Identities=8%  Similarity=0.025  Sum_probs=79.7

Q ss_pred             eEEEeCCCcEEEEeccCC-----CeEEEEE-------ecCCCEEEEEecCC-------eEEEEECCC-CeEE-----EEE
Q 041916            2 PYIYNRDGTELHCLKEHG-----AVLKLQF-------LRNHFLLASINKFG-------QLRYQDVTM-GEIV-----GNF   56 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~-----~~~~l~~-------s~~~~~l~s~~~dg-------~i~iwd~~~-~~~~-----~~~   56 (359)
                      |++.|..+..+.++-.-.     .+..++|       ++++..|+++...+       .|.+++... |...     ..+
T Consensus       164 i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v  243 (496)
T 3kya_A          164 IQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI  243 (496)
T ss_dssp             EEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE
T ss_pred             EEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee
Confidence            456674444444443222     3599999       99998666665543       366776443 2221     222


Q ss_pred             ecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCC-------CCcc-----------eEEE-e-ccCCCeEEEEEcCCCC
Q 041916           57 RTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPT-------TAAP-----------LIKM-L-CHQGPVSALAFHPNGH  115 (359)
Q Consensus        57 ~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~-------~~~~-----------~~~~-~-~h~~~v~~i~~~~~~~  115 (359)
                      ... .....++++|+ +.++++-..++.|..+|+.       ++..           ...+ . ......+.|+|+|+|+
T Consensus       244 ~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          244 AAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK  322 (496)
T ss_dssp             EEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS
T ss_pred             ccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC
Confidence            222 24567889994 5666677788899999987       5543           1122 1 2223457899999999


Q ss_pred             EEEEE-eCCCeEEEEEcC
Q 041916          116 LMATS-GKECKIKIWDLR  132 (359)
Q Consensus       116 ~l~~~-~~d~~i~iwd~~  132 (359)
                      +|+.+ +..+.|+.+|..
T Consensus       323 ~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          323 YAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEecC
Confidence            65555 466789986653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.98  E-value=4.6e-05  Score=74.20  Aligned_cols=168  Identities=10%  Similarity=-0.026  Sum_probs=98.5

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCCC-CE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPFN-GV   74 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~~-~~   74 (359)
                      |++.+ ..+.....+.....+..|+|++.+..|+.+. ..+.|..+++..    ......+......+..|++.+.+ .+
T Consensus       388 I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L  467 (699)
T 1n7d_A          388 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI  467 (699)
T ss_dssp             -CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC
T ss_pred             eEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE
Confidence            34445 2233333334444568899999776666554 457899999875    22222222222345678888644 45


Q ss_pred             EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec---cCCceeEEE
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL---PGHAKTLDF  149 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~---~~~i~~~~~  149 (359)
                      +++-...+.|.++++........+.........|+++|.+.+|+.+..  .+.|..+++........+   -.....|+|
T Consensus       468 Y~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav  547 (699)
T 1n7d_A          468 YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL  547 (699)
T ss_dssp             EECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred             EEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence            555556788999998754333222222234578999997666555443  267888887643221111   234688999


Q ss_pred             cCCc--eEEEE-cCCcEEEEcCC
Q 041916          150 SQKG--LLAVG-TGSFVQILGDF  169 (359)
Q Consensus       150 s~~g--l~~~~-~d~~i~i~d~~  169 (359)
                      +|++  |+.+. ..+.|..+++.
T Consensus       548 d~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          548 DLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             CTTTCCEEEEETTTTEEEEECSS
T ss_pred             eccCCEEEEEecCCCeEEEEccC
Confidence            9876  55554 45789999964

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.97  E-value=0.0028  Score=55.97  Aligned_cols=185  Identities=14%  Similarity=0.102  Sum_probs=105.5

Q ss_pred             ecc-CCCeEEEEEecCCCEEEEEe------------cCCeEEEEECCC--CeEE-EEEec-----CCCCeEEEEEcC--C
Q 041916           15 LKE-HGAVLKLQFLRNHFLLASIN------------KFGQLRYQDVTM--GEIV-GNFRT-----GLGRTDVMRVNP--F   71 (359)
Q Consensus        15 l~~-h~~~~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~sp--~   71 (359)
                      +.+ ..++-.+...|+|..+++++            .+|.|.++|+.+  ++.. ..+.+     .....+.+.+.+  +
T Consensus        45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            444 23557788889886666552            689999999973  3321 12222     123577888766  3


Q ss_pred             CC--EEEEEeC--CCeEEEEeCCCCcc----eEEEecc-CCCeEEEEEcCCCCEEEEEe-----------------CCCe
Q 041916           72 NG--VVSLGHS--GGTVTMWKPTTAAP----LIKMLCH-QGPVSALAFHPNGHLMATSG-----------------KECK  125 (359)
Q Consensus        72 ~~--~l~sg~~--dg~v~lwd~~~~~~----~~~~~~h-~~~v~~i~~~~~~~~l~~~~-----------------~d~~  125 (359)
                      +.  ++++-..  +.+|.+|++.....    +..+.+. -...+++++.++|.+.++..                 ..|.
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~  204 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  204 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence            43  4454444  56788887765422    2223222 23578999999998777654                 1245


Q ss_pred             EEEEEcCCceeeEeccCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEee-CCC
Q 041916          126 IKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRP-YED  199 (359)
Q Consensus       126 i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p-~~~  199 (359)
                      |..+|...-+.+..--...+.++|||++  ++++. ..+.|..|++.......  ..+ ..    ....-.+++.+ +|.
T Consensus       205 vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~----~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          205 VTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF----DTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC----SSEEEEEEECTTTCC
T ss_pred             EEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC----CCCCceEEEeCCCCc
Confidence            6666653211111112356899999999  44444 46899999975332211  112 11    12456677777 465


Q ss_pred             EEEEE
Q 041916          200 VLGIG  204 (359)
Q Consensus       200 ~l~~~  204 (359)
                      +.+++
T Consensus       280 lwva~  284 (355)
T 3sre_A          280 LWVGC  284 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.97  E-value=0.0051  Score=53.66  Aligned_cols=150  Identities=9%  Similarity=-0.032  Sum_probs=95.8

Q ss_pred             eEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~   97 (359)
                      +..+++.+.+ .++++-...+.|.++++........+.........+++.|.+..|+.+.  ..+.|...++.. .....
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEE
Confidence            4678888754 4445555678999999875433333334456678999999766655554  357888888763 33333


Q ss_pred             E-eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916           98 M-LCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus        98 ~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~  171 (359)
                      + ...-..-+.|+|+|++..|+.+. ..+.|..+|+.........   -..+..+++..++++.+. ..+.|..++..++
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            3 22233458999999777776654 5678999998743221111   235677887666644444 4578888886565

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=0.0038  Score=57.60  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=92.6

Q ss_pred             eEEEEEec-CCCEEEEE-ecCCeEEEEECCCCeEEEEEecC---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 041916           21 VLKLQFLR-NHFLLASI-NKFGQLRYQDVTMGEIVGNFRTG---LGRTDVMRV-------NPFNGVVSLGHSGG------   82 (359)
Q Consensus        21 ~~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------sp~~~~l~sg~~dg------   82 (359)
                      +..|+|+| ++..|+.+ ...+.|++.|+.++.....+...   ......++|       ++++..|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            57899998 34444444 44467999999877765544432   235789999       99998666665543      


Q ss_pred             -eEEEEeCCC-Ccce-----EEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC-------Ccee-----------
Q 041916           83 -TVTMWKPTT-AAPL-----IKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLR-------KYEV-----------  136 (359)
Q Consensus        83 -~v~lwd~~~-~~~~-----~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~-------~~~~-----------  136 (359)
                       .|.+++... +...     ..+.... ....++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             266776433 2221     2232222 2357889995 5555556677889999997       4432           


Q ss_pred             ---eEecc--CCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916          137 ---LQTLP--GHAKTLDFSQKG--LLAVG-TGSFVQILGD  168 (359)
Q Consensus       137 ---~~~~~--~~i~~~~~s~~g--l~~~~-~d~~i~i~d~  168 (359)
                         +....  .....|+|+|+|  ++.+. ..+.|+.++.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence               22222  346899999999  45554 4468888653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.94  E-value=0.0084  Score=52.16  Aligned_cols=151  Identities=11%  Similarity=0.029  Sum_probs=96.0

Q ss_pred             CeEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCcceE
Q 041916           20 AVLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-G-GTVTMWKPTTAAPLI   96 (359)
Q Consensus        20 ~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-d-g~v~lwd~~~~~~~~   96 (359)
                      .+..+++.+.+. +.++-...+.|.++|+........+.........+++.|.+..|+.+.. . +.|..+++. +....
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeE
Confidence            358899987554 4455456789999998754433334434456789999997665554443 3 688888875 33333


Q ss_pred             EEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce--eeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcC
Q 041916           97 KML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYE--VLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGD  168 (359)
Q Consensus        97 ~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~--~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~  168 (359)
                      .+. ..-...+.|+|+|++..|+.+. ..+.|..+|+....  .+...   ......+++..+.++.+. ..+.|..++.
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence            332 2234568999999877776665 55799999987432  22221   134577787643344444 4578888886


Q ss_pred             CCC
Q 041916          169 FSG  171 (359)
Q Consensus       169 ~~~  171 (359)
                      .++
T Consensus       237 ~~g  239 (316)
T 1ijq_A          237 LTG  239 (316)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.92  E-value=0.007  Score=53.59  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=82.2

Q ss_pred             cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEe---cCCCCeEEEEEcCC---CCEEEEEeC-C-----C
Q 041916           17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFR---TGLGRTDVMRVNPF---NGVVSLGHS-G-----G   82 (359)
Q Consensus        17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~sp~---~~~l~sg~~-d-----g   82 (359)
                      +-..+..|+|.|+|.++++ ..+|.|.+++  ++..  +..+.   ........|+|+|+   +..|+++.. .     +
T Consensus        29 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            3445699999999986555 5679999999  4542  22221   12356889999998   444444433 2     5


Q ss_pred             eEEEEeCCCCc-----ceE-EEec---cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCc------
Q 041916           83 TVTMWKPTTAA-----PLI-KMLC---HQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRKY------  134 (359)
Q Consensus        83 ~v~lwd~~~~~-----~~~-~~~~---h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~------  134 (359)
                      .|..|++..+.     .+. .+..   .......|+|.|||.+.++.+.             .+.|.-+|....      
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            78888876432     111 1221   1112368999999976655432             156666666431      


Q ss_pred             --------eeeEec-cCCceeEEEcC-Cc-eEEEEc
Q 041916          135 --------EVLQTL-PGHAKTLDFSQ-KG-LLAVGT  159 (359)
Q Consensus       135 --------~~~~~~-~~~i~~~~~s~-~g-l~~~~~  159 (359)
                              ..+... -.....++|+| +| ++++..
T Consensus       186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred             ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence                    011111 12357889999 66 666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.88  E-value=0.00022  Score=68.95  Aligned_cols=181  Identities=9%  Similarity=-0.031  Sum_probs=99.5

Q ss_pred             EEEEEecCCCEEEEEe-cC-----CeEEEEECCCCeEEEEEecCC-CCe----EEEEEcCCCCEEEEEeCCC--------
Q 041916           22 LKLQFLRNHFLLASIN-KF-----GQLRYQDVTMGEIVGNFRTGL-GRT----DVMRVNPFNGVVSLGHSGG--------   82 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~-~~v----~~~~~sp~~~~l~sg~~dg--------   82 (359)
                      .++++.+++++++.|+ .+     ..+.+||..++.-.. +.... .+.    ....+..++..++.|+.+|        
T Consensus       290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~  368 (656)
T 1k3i_A          290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS  368 (656)
T ss_dssp             CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred             cceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence            5667778999999988 34     579999998876332 21000 000    0012234555556665544        


Q ss_pred             -eEEEEeCCCCcceEEEeccC---------CCeEEEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCceeeE--
Q 041916           83 -TVTMWKPTTAAPLIKMLCHQ---------GPVSALAFHP-NGHLMATSGKEC-----------KIKIWDLRKYEVLQ--  138 (359)
Q Consensus        83 -~v~lwd~~~~~~~~~~~~h~---------~~v~~i~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--  138 (359)
                       .+..||+.+..-......+.         ..-.++.|.. ++.+++.|+.++           .|.+||..+.....  
T Consensus       369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred             cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence             46788887665333222111         1224455544 677777777432           68888887754332  


Q ss_pred             --eccC--CceeEEEcCCc--eEEEEcC-----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916          139 --TLPG--HAKTLDFSQKG--LLAVGTG-----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL  201 (359)
Q Consensus       139 --~~~~--~i~~~~~s~~g--l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  201 (359)
                        .++.  .-.+++..|+|  ++.+|.+           ..+.+||..++  ....+..... +........+.|+++++
T Consensus       449 ~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--~W~~~~~~~~-~R~~hs~a~ll~dg~v~  525 (656)
T 1k3i_A          449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSI-VRVYHSISLLLPDGRVF  525 (656)
T ss_dssp             TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSS-CCCTTEEEEECTTSCEE
T ss_pred             cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--ceeecCCCCC-ccccccHhhcCCCcEEE
Confidence              2221  12456677888  4445433           46889997554  1111111111 11123345567899999


Q ss_pred             EEEcC
Q 041916          202 GIGHS  206 (359)
Q Consensus       202 ~~~~~  206 (359)
                      ++|+.
T Consensus       526 v~GG~  530 (656)
T 1k3i_A          526 NGGGG  530 (656)
T ss_dssp             EEECC
T ss_pred             ecCCC
Confidence            88885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.85  E-value=0.01  Score=51.92  Aligned_cols=179  Identities=11%  Similarity=0.136  Sum_probs=102.3

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      .++.|++ +..++ ++..+.|.. ..+.|+.-..+.   .+.+.+..+.+.+++..++++ .+|.|.. ....+..-..+
T Consensus        83 ~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~  157 (327)
T 2xbg_A           83 NSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL  157 (327)
T ss_dssp             EEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred             EEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence            8888886 44444 455665443 334344322222   123457778877777666655 4554432 22223332222


Q ss_pred             -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCceeeEec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCC
Q 041916           99 -LCHQGPVSALAFHPNGHLMATSGKECKIKIWDL--RKYEVLQTL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSH  173 (359)
Q Consensus        99 -~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~  173 (359)
                       ..+...+.++++.|++.+++++...+..+-+|-  .+.+.+... ...+..+.+++++ +++++.+|.+.+.+...+ .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G-~  236 (327)
T 2xbg_A          158 VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS-E  236 (327)
T ss_dssp             ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE-E
T ss_pred             ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC-C
Confidence             244567899999999888877655444444553  445554332 3467889999998 888888888877731112 2


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ....+..........+.+++|.+++.+++++..
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence            212111110001225889999988887777664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.70  E-value=0.024  Score=54.23  Aligned_cols=155  Identities=10%  Similarity=0.017  Sum_probs=97.5

Q ss_pred             ccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q 041916           16 KEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        16 ~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~   92 (359)
                      ..-..+..++|++.+..|+.+. ..+.|..+++..... ...+......+..+++.+.+. ++++-...+.|.+.++...
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            3444568999999766666554 467899999875432 233444445788999998655 5555567789999998754


Q ss_pred             cceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEE-cCCcEE
Q 041916           93 APLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVG-TGSFVQ  164 (359)
Q Consensus        93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~-~d~~i~  164 (359)
                      .....+...-....+|+++|.+.+|+.+..  .+.|...++.........   -..+..|++++++  ++.+. ..+.|.
T Consensus       117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            332223233345678999997666666553  467777777643222222   2356899999865  55554 457899


Q ss_pred             EEcCCC
Q 041916          165 ILGDFS  170 (359)
Q Consensus       165 i~d~~~  170 (359)
                      .+|+..
T Consensus       197 ~~~~dG  202 (619)
T 3s94_A          197 KSNLDG  202 (619)
T ss_dssp             EESSSC
T ss_pred             EecCCC
Confidence            998643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.69  E-value=0.0018  Score=62.53  Aligned_cols=114  Identities=9%  Similarity=-0.008  Sum_probs=77.0

Q ss_pred             EEEEEec-CCCEEEEEecCC-----------eEEEEECCCCeE--EEEEec-CCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 041916           22 LKLQFLR-NHFLLASINKFG-----------QLRYQDVTMGEI--VGNFRT-GLGRTDVMRVNPFNGVVSLGHS-GGTVT   85 (359)
Q Consensus        22 ~~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~sp~~~~l~sg~~-dg~v~   85 (359)
                      ..+++.| ++.+++.|+.+.           .+.+||+.+++.  +..+.. +.....++++.+++.+++.|+. +..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            5678888 888888887543           688999988752  223322 3334556788899999999884 55799


Q ss_pred             EEeCCCCcceE--EEeccCCCeEEEEEcCCCCEEEEEe-CC-----CeEEEEEcCCcee
Q 041916           86 MWKPTTAAPLI--KMLCHQGPVSALAFHPNGHLMATSG-KE-----CKIKIWDLRKYEV  136 (359)
Q Consensus        86 lwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~  136 (359)
                      +||+.+.+-..  .+.... .-.++++.++|++++.|+ .+     ..+.+||..+..-
T Consensus       269 ~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99987653211  111111 123556678999999988 34     5699999987653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.64  E-value=0.026  Score=55.45  Aligned_cols=151  Identities=11%  Similarity=0.006  Sum_probs=96.5

Q ss_pred             eEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-SG-GTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~d-g~v~lwd~~~~~~~~~   97 (359)
                      +..|++.+.+..|+ +-...+.|.+.++........+.........|++.|.+..|+.+. .+ +.|...++........
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l  552 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  552 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence            47899998765444 445578999999975544344444555689999999866555554 23 6798888864433333


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEecc-----CCceeEEEcCCceEEEE-cCCcEEEEcCCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKGLLAVG-TGSFVQILGDFS  170 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~  170 (359)
                      +...-...+.|++++.+..|+.+. ..+.|..+|+........+.     .....|++..+.++.+. ..+.|...|..+
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence            333335678999998777777664 45689999986543222221     23456776555455554 346777777555


Q ss_pred             C
Q 041916          171 G  171 (359)
Q Consensus       171 ~  171 (359)
                      +
T Consensus       633 G  633 (791)
T 3m0c_C          633 G  633 (791)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.64  E-value=0.011  Score=52.91  Aligned_cols=140  Identities=14%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA------   93 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~------   93 (359)
                      ...+.+|.-++++- ++.||.-++..+..-+.+...    -..+..+..||+|.+||..+. ..|.|..+..+.      
T Consensus        26 ~~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EEEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred             EEEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence            33445666665553 578998888754434444433    235788999999999998755 478888876321      


Q ss_pred             ----c--eEEEec------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCc--eeeEec-------c-----CCc
Q 041916           94 ----P--LIKMLC------HQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKY--EVLQTL-------P-----GHA  144 (359)
Q Consensus        94 ----~--~~~~~~------h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~--~~~~~~-------~-----~~i  144 (359)
                          +  ...+.-      ...+|..+.|||   .+..|++-..|++|++||+...  +|. .+       .     ..|
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                1  123332      256799999999   5678999999999999999862  222 22       1     357


Q ss_pred             eeEEEcCCc--eEEEE--cCCcEEEE
Q 041916          145 KTLDFSQKG--LLAVG--TGSFVQIL  166 (359)
Q Consensus       145 ~~~~~s~~g--l~~~~--~d~~i~i~  166 (359)
                      .+++|.++|  +++.+  .+|.|+-.
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            899999988  66655  66877754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.61  E-value=0.0067  Score=49.24  Aligned_cols=166  Identities=15%  Similarity=0.093  Sum_probs=95.5

Q ss_pred             CCEEEEEecCCeEEEEECCCCe------EEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc------eE
Q 041916           30 HFLLASINKFGQLRYQDVTMGE------IVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP------LI   96 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~------~~   96 (359)
                      ...|++...| +|+.=.+.++.      ....+-. .-..+..++|+|+|.+.++  .+|.+.-.++.+...      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666666 66655555443      1122221 1246789999998887666  778877777655322      11


Q ss_pred             EEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---------eeEec-cCCceeEEEcCCc-eEEEEcCCcE
Q 041916           97 KML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---------VLQTL-PGHAKTLDFSQKG-LLAVGTGSFV  163 (359)
Q Consensus        97 ~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i  163 (359)
                      .+-  +..+ ..++.|+|+|.+.++  .||.|+-++--+..         .+... =..+..|.+.|+| |+++. |+.+
T Consensus        81 ~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l  156 (236)
T 1tl2_A           81 KIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF  156 (236)
T ss_dssp             EEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             Eeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence            111  1111 478999999988777  56999888763311         11111 1357999999999 88888 8886


Q ss_pred             EEEcCCCCCCc----cceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          164 QILGDFSGSHN----YSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       164 ~i~d~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +-.........    .....++..  -....-+.|+|++.+.++.
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCCcccccccceeccCC--cceEEEEEECCCCcEEEEe
Confidence            54433222111    111222111  1134446788988777665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.60  E-value=0.055  Score=51.80  Aligned_cols=190  Identities=11%  Similarity=-0.033  Sum_probs=117.4

Q ss_pred             CCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceE
Q 041916           19 GAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLI   96 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~   96 (359)
                      ..+..++|++.+..|+.+ ..++.|..+++........+......+..+++.+.+. ++++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            345899999976555544 4578999999875544444443335678899987655 45555567889999987543322


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCC
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDF  169 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~  169 (359)
                      .+...-....+|+++|...+|+.+..  .+.|...++.........  -..+..|++++++  ++.+. ..+.|..+|+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            22233345689999996666666552  567888887654322222  2357899999975  55554 45789999965


Q ss_pred             CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ... . ..+....    ....++++.. +.++.+-...+.+..+..
T Consensus       197 G~~-~-~v~~~~l----~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          197 GLN-R-EVIADDL----PHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             SCS-C-EEEEECC----SCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             CCc-e-EEeeccC----CCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            432 2 3332221    1345777754 444445445565555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.48  E-value=0.013  Score=52.55  Aligned_cols=130  Identities=8%  Similarity=0.036  Sum_probs=82.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCcceEEEecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------
Q 041916           71 FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-----------  135 (359)
Q Consensus        71 ~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------  135 (359)
                      +|.-++.+ .++.|+.-++......+.+...    -+.|..+..+|+|.+||..+. ..|.|..+..+.           
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence            44444443 2356777777654445555432    235788999999999998864 688888886221           


Q ss_pred             -eeEec---------cCCceeEEEcCCc-----eEEEEcCCcEEEEcCCCCCCccceee------cccCCCCcceEEEEE
Q 041916          136 -VLQTL---------PGHAKTLDFSQKG-----LLAVGTGSFVQILGDFSGSHNYSRYM------GHSMVKGYQIGKVSF  194 (359)
Q Consensus       136 -~~~~~---------~~~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~  194 (359)
                       .++.+         ..+|..+.|+|-|     +++...|+.|++||+.........+.      +... ....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~-~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDA-RVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCS-SCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCc-ccceEEEEEE
Confidence             11122         2468999999976     88899999999999876322222221      1100 1136888899


Q ss_pred             eeCCCEEEE
Q 041916          195 RPYEDVLGI  203 (359)
Q Consensus       195 ~p~~~~l~~  203 (359)
                      .+++-.|.+
T Consensus       188 g~~~lTLYv  196 (452)
T 3pbp_A          188 SKDGLTLYC  196 (452)
T ss_dssp             CTTSSCEEE
T ss_pred             cCCCcEEEE
Confidence            886654444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.47  E-value=0.02  Score=50.62  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=62.4

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEe---ccCCCeEEEEEcCC---CCEEEEEeC-C--
Q 041916           55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--LIKML---CHQGPVSALAFHPN---GHLMATSGK-E--  123 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~---~h~~~v~~i~~~~~---~~~l~~~~~-d--  123 (359)
                      .+.........|+|.|+|.++++ ..+|.|.+++  ++..  +..+.   ........|+|+|+   +..|+++.. .  
T Consensus        25 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~  101 (352)
T 2ism_A           25 EVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG  101 (352)
T ss_dssp             EEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred             EEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence            33334456789999999986554 5669999998  3432  11111   12345789999998   556555443 2  


Q ss_pred             ---CeEEEEEcCCce-----ee-Eecc---C---CceeEEEcCCc-eEEE
Q 041916          124 ---CKIKIWDLRKYE-----VL-QTLP---G---HAKTLDFSQKG-LLAV  157 (359)
Q Consensus       124 ---~~i~iwd~~~~~-----~~-~~~~---~---~i~~~~~s~~g-l~~~  157 (359)
                         +.|..|+.....     .+ ..++   +   ....++|.|+| ++++
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence               678888876431     12 2233   1   34789999999 4444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.47  E-value=0.011  Score=51.00  Aligned_cols=163  Identities=5%  Similarity=-0.044  Sum_probs=97.1

Q ss_pred             EEEEecCCCEEEEEecC--------------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----CCCeE
Q 041916           23 KLQFLRNHFLLASINKF--------------GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----SGGTV   84 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----~dg~v   84 (359)
                      +--+++++.+|+-+...              ..|+..++..++. ..+...    .+..|++++..|+-..    .+..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence            44568889888777543              4688888876653 233322    1336788888888765    34456


Q ss_pred             EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC-
Q 041916           85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG-  160 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d-  160 (359)
                      ...++.. .....+..+..    .+|+|++..|+-.+. ..+|...++..+.....+.+... ..++|++  ++-...+ 
T Consensus       132 y~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          132 YRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             EEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGG
T ss_pred             EEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCC
Confidence            6666653 33444544432    456788888887665 57888888877654444444433 3466877  4444433 


Q ss_pred             -CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916          161 -SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       161 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                       ..|..-++...  ....+...      .+  ..|+|++.+|..++.
T Consensus       206 ~~~I~~~~ldG~--~~~~Lt~~------~~--~~~~~~g~~Iy~~~~  242 (302)
T 3s25_A          206 DNAIVHVNINNP--NPVVLTEA------NI--EHYNVYGSLIFYQRG  242 (302)
T ss_dssp             TTEEEEECSSSC--CCEECSCS------CE--EEEEEETTEEEEEEC
T ss_pred             CcEEEEEECCCC--CeEEEeCC------Cc--ceEEECCCEEEEEEC
Confidence             36766665443  23333322      33  348888988876543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.42  E-value=0.058  Score=47.67  Aligned_cols=148  Identities=19%  Similarity=0.210  Sum_probs=85.2

Q ss_pred             EEEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEe---cCCCCeEEEEEcCC---CCEEEEEeC--
Q 041916           11 ELHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFR---TGLGRTDVMRVNPF---NGVVSLGHS--   80 (359)
Q Consensus        11 ~~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~sp~---~~~l~sg~~--   80 (359)
                      .+..+.. -..+..|+|.|+|.++++ ..+|.|.++| .++. .+..+.   ........|+++|+   +..|+++..  
T Consensus        20 ~~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           20 KISEVASDLEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             EEEEEECSCSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             EEEEEeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            3444433 344699999999985554 5669999997 4555 222221   12356889999997   444444332  


Q ss_pred             --C----CeEEEEeCCCC--c-----ce-EEEec-cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcC
Q 041916           81 --G----GTVTMWKPTTA--A-----PL-IKMLC-HQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLR  132 (359)
Q Consensus        81 --d----g~v~lwd~~~~--~-----~~-~~~~~-h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~  132 (359)
                        +    ..|..|++...  .     .+ ..+.. .......|+|.|||.++++.+.             .|.|.-+|..
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              3    56778877643  1     11 11221 1112467999999986666432             2456666654


Q ss_pred             Cc---------eeeEec-cCCceeEEEcC-Cc-eEEEEcC
Q 041916          133 KY---------EVLQTL-PGHAKTLDFSQ-KG-LLAVGTG  160 (359)
Q Consensus       133 ~~---------~~~~~~-~~~i~~~~~s~-~g-l~~~~~d  160 (359)
                      ..         ..+... -.....++|+| +| ++++...
T Consensus       178 G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred             CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence            31         012222 22467899999 66 6666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.40  E-value=0.0004  Score=67.58  Aligned_cols=151  Identities=10%  Similarity=-0.016  Sum_probs=89.7

Q ss_pred             eEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-S-GGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~-dg~v~lwd~~~~~~~~~   97 (359)
                      +..|++.+. +.++++-...+.|.++++........+.........|+++|.+..|+.+. . .+.|.++++........
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            366788754 44444444567899999875544333333334568899999765554443 2 26788887753322222


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEecc-----CCceeEEEcCCceE-EEEcCCcEEEEcCCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKGLL-AVGTGSFVQILGDFS  170 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~gl~-~~~~d~~i~i~d~~~  170 (359)
                      +...-...+.|+|+|++..|+.+ +..+.|..+|+........+.     .....|++..+.++ +....+.|..++..+
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence            22222345689999976655554 456789999987532222221     23566777666644 433457888888555


Q ss_pred             C
Q 041916          171 G  171 (359)
Q Consensus       171 ~  171 (359)
                      +
T Consensus       615 G  615 (699)
T 1n7d_A          615 G  615 (699)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.31  E-value=0.055  Score=47.81  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ceEEEe---ccCCCeEEEEEcCC---CCEEEEEeC----C
Q 041916           55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA-PLIKML---CHQGPVSALAFHPN---GHLMATSGK----E  123 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~-~~~~~~---~h~~~v~~i~~~~~---~~~l~~~~~----d  123 (359)
                      .+.........|+|.|+|.+++ +..+|.|.++|. ++. .+..+.   ........|+|+|+   +..|+++..    +
T Consensus        23 ~va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           23 EVASDLEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             EEECSCSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred             EEeCCCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence            3333445678999999998555 456699999973 444 222111   12345789999997   555555433    3


Q ss_pred             ----CeEEEEEcCCc-------eee-Eecc----CCceeEEEcCCc-eEEEEcC--------------CcEEEEcCCCCC
Q 041916          124 ----CKIKIWDLRKY-------EVL-QTLP----GHAKTLDFSQKG-LLAVGTG--------------SFVQILGDFSGS  172 (359)
Q Consensus       124 ----~~i~iwd~~~~-------~~~-~~~~----~~i~~~~~s~~g-l~~~~~d--------------~~i~i~d~~~~~  172 (359)
                          ..|..|+....       +.+ ..++    .....|+|.|+| |+++..+              |.|.-++....-
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence                57888887653       111 1222    135789999999 4444221              456666642210


Q ss_pred             C------cccee-ecccCCCCcceEEEEEee-CCCEEEEEcC
Q 041916          173 H------NYSRY-MGHSMVKGYQIGKVSFRP-YEDVLGIGHS  206 (359)
Q Consensus       173 ~------~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~~~~~  206 (359)
                      .      ....+ .++.     ....++|+| ++.++++-..
T Consensus       181 p~~npf~~~~i~a~G~r-----np~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGHR-----NPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             CTTSSSTTCCEEEECCS-----CCCEEEECTTTCCEEEEECC
T ss_pred             CCCCCCCCCcEEEEccC-----CcceEEEeCCCCCEEEEecC
Confidence            0      01111 1222     367899999 6766655443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.28  E-value=0.0054  Score=49.80  Aligned_cols=140  Identities=16%  Similarity=0.055  Sum_probs=83.0

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeE------EEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI------VGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA   92 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~   92 (359)
                      ....++|+|+|.+.++  .+|.+.-.+..++..      -..+-. .-....++.|.|+|.+.++  .||.|+-++..+.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~  117 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS  117 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence            3479999999986666  678877777655211      111210 1112478999999988877  5699988886442


Q ss_pred             cce------EEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee------eEec--c--CCceeEEEcCCc-e
Q 041916           93 APL------IKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV------LQTL--P--GHAKTLDFSQKG-L  154 (359)
Q Consensus        93 ~~~------~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~--~--~~i~~~~~s~~g-l  154 (359)
                      ..-      ..+ ..-=..+..|.|.|+|.+.++.  |+.++-+..-+...      ...+  .  .....+.|.|+| +
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l  195 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL  195 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence            211      111 1111467999999999877766  77754332221110      0111  1  123557799999 7


Q ss_pred             EEEEcCCcEEEE
Q 041916          155 LAVGTGSFVQIL  166 (359)
Q Consensus       155 ~~~~~d~~i~i~  166 (359)
                      .++. ++.++--
T Consensus       196 ~~v~-~g~~Y~~  206 (236)
T 1tl2_A          196 FGVQ-GGKFYED  206 (236)
T ss_dssp             EEEE-TTEEEEE
T ss_pred             EEEe-CCeEEec
Confidence            6666 7754433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.23  E-value=0.062  Score=47.20  Aligned_cols=148  Identities=14%  Similarity=0.216  Sum_probs=86.5

Q ss_pred             EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEE----eccCCCeEEEEEcCC---CCEEEEE---
Q 041916           53 VGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL--IKM----LCHQGPVSALAFHPN---GHLMATS---  120 (359)
Q Consensus        53 ~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~--~~~----~~h~~~v~~i~~~~~---~~~l~~~---  120 (359)
                      +..+.........|+|.|+|.++++--..|.|.+++...+...  ..+    ....+....|+|+|+   +.+|++.   
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3445555567889999999997776655899999987655432  111    123456789999995   4455443   


Q ss_pred             eCCCeEEEEEcCCc----------eee-Eecc----CCceeEEEcCCc-e-EEEEc-------------CCcEEEEcCCC
Q 041916          121 GKECKIKIWDLRKY----------EVL-QTLP----GHAKTLDFSQKG-L-LAVGT-------------GSFVQILGDFS  170 (359)
Q Consensus       121 ~~d~~i~iwd~~~~----------~~~-~~~~----~~i~~~~~s~~g-l-~~~~~-------------d~~i~i~d~~~  170 (359)
                      ..++.|.-|.+..+          +.+ ..++    .....|.|.|+| | ++.+.             .|.|.-++...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            23456776766541          111 1222    134679999999 4 44332             24555555322


Q ss_pred             CC---C---cccee-ecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          171 GS---H---NYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       171 ~~---~---~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      .-   .   ....+ .+|.     ....++|+|+|.+.++-.
T Consensus       184 ~ip~~nPf~~~~i~a~G~R-----Np~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHR-----NVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCS-----BCCEEEECTTCCEEEEEC
T ss_pred             CccCCCCCCCCeEEeeCCC-----CcceEEECCCCCEEEEec
Confidence            10   0   01111 1232     467899999988766654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.21  E-value=0.053  Score=46.40  Aligned_cols=140  Identities=10%  Similarity=0.055  Sum_probs=73.3

Q ss_pred             cCCCEEEEEecC-----CeEEEEECCCCe---EEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q 041916           28 RNHFLLASINKF-----GQLRYQDVTMGE---IVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTA   92 (359)
Q Consensus        28 ~~~~~l~s~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~   92 (359)
                      .++.+++.|+.+     ..+.+||+.++.   -..  .+........++.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            356777777754     468999988765   222  22211112222222  56777777644     35888998765


Q ss_pred             cc--eEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCcee--eEeccCC--ceeEEEcCCc-eEEEEcC
Q 041916           93 AP--LIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYEV--LQTLPGH--AKTLDFSQKG-LLAVGTG  160 (359)
Q Consensus        93 ~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~--~~~~~~~--i~~~~~s~~g-l~~~~~d  160 (359)
                      +-  +..+......-.++.+  ++.+++.|+.+     ..+.+||+.+.+-  +..++.+  -.+++...+. ++.+|.+
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  216 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD  216 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCC
Confidence            42  2222111111122222  56666776654     4688999887543  3223221  1233333333 4445443


Q ss_pred             -----CcEEEEcCCCC
Q 041916          161 -----SFVQILGDFSG  171 (359)
Q Consensus       161 -----~~i~i~d~~~~  171 (359)
                           ..+.+||+.+.
T Consensus       217 ~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             SSSBCCCEEEEETTTT
T ss_pred             CCcccceEEEEeCCCC
Confidence                 46889997654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.19  E-value=0.032  Score=49.20  Aligned_cols=145  Identities=10%  Similarity=0.123  Sum_probs=90.1

Q ss_pred             eEEEEEec--CCC-EEEEEe-c--CCeEEEEECCCC-e---EEEEEecC-CCCeEEEEEcCCCCEEEEEe----------
Q 041916           21 VLKLQFLR--NHF-LLASIN-K--FGQLRYQDVTMG-E---IVGNFRTG-LGRTDVMRVNPFNGVVSLGH----------   79 (359)
Q Consensus        21 ~~~l~~s~--~~~-~l~s~~-~--dg~i~iwd~~~~-~---~~~~~~~~-~~~v~~~~~sp~~~~l~sg~----------   79 (359)
                      +..+.+.+  ++. +|+++. .  +.+|.+|++..+ .   .+..+.+. ....+.+++.++|.++++..          
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence            48888876  353 444442 2  467888877653 2   23334332 24578999999998777654          


Q ss_pred             -------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-cee--eE--eccCCcee
Q 041916           80 -------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEV--LQ--TLPGHAKT  146 (359)
Q Consensus        80 -------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~--~~~~~i~~  146 (359)
                             ..|.|..+|..  + +..+...-..-+.|+|+||++.|+.+. ..+.|..||+.. +..  ..  .+.+.+..
T Consensus       194 ~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDG  270 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN  270 (355)
T ss_dssp             HHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred             chhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCce
Confidence                   13566666653  2 222322234568999999999887765 568999999863 322  12  23566788


Q ss_pred             EEEcC-Cc-eEE-EEcC-CcEEEEcC
Q 041916          147 LDFSQ-KG-LLA-VGTG-SFVQILGD  168 (359)
Q Consensus       147 ~~~s~-~g-l~~-~~~d-~~i~i~d~  168 (359)
                      +++.+ +| +.+ +..+ +.|..|+.
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECC
Confidence            99999 58 555 4434 35555553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.19  E-value=0.062  Score=47.19  Aligned_cols=148  Identities=19%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             EEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEE--EEE----ecCCCCeEEEEEcCC---CCEEEEE---
Q 041916           12 LHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV--GNF----RTGLGRTDVMRVNPF---NGVVSLG---   78 (359)
Q Consensus        12 ~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~sp~---~~~l~sg---   78 (359)
                      +..+.. -..++.|+|.|+|.++++--..|.|++++..++...  ..+    .........|+++|+   +..|+..   
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            334443 445699999999998777655899999987666532  222    123456889999996   3444332   


Q ss_pred             eCCCeEEEEeCCCC--------cceE---EEe-ccCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCC
Q 041916           79 HSGGTVTMWKPTTA--------APLI---KML-CHQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRK  133 (359)
Q Consensus        79 ~~dg~v~lwd~~~~--------~~~~---~~~-~h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~  133 (359)
                      ..++.|.-|.+..+        ....   .+. .....-..|+|.|||.+.++.+.             .|.|.-++...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            24456666765541        1111   121 11113457999999987776542             24555555542


Q ss_pred             c---------eeeEec-cCCceeEEEcCCc-eEEEEc
Q 041916          134 Y---------EVLQTL-PGHAKTLDFSQKG-LLAVGT  159 (359)
Q Consensus       134 ~---------~~~~~~-~~~i~~~~~s~~g-l~~~~~  159 (359)
                      .         ..+... -.....++|+|+| ++++-.
T Consensus       184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~  220 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF  220 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred             CccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence            2         112222 1236789999998 666553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.15  E-value=0.079  Score=48.54  Aligned_cols=102  Identities=18%  Similarity=0.239  Sum_probs=61.4

Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEEec------cCCCeEEEEEcCC---CCEEEEEeC-
Q 041916           55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL--IKMLC------HQGPVSALAFHPN---GHLMATSGK-  122 (359)
Q Consensus        55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~--~~~~~------h~~~v~~i~~~~~---~~~l~~~~~-  122 (359)
                      .+.......+.|+|.|+|+++++-...+.|.+++..++...  ..+..      ..+....|+|+|+   +.+|+++.. 
T Consensus        21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            33334456789999999997776554457988887655432  22211      2345679999995   556555432 


Q ss_pred             ------------CCeEEEEEcCCc-------eeeE-ecc----CCceeEEEcCCc-eEE
Q 041916          123 ------------ECKIKIWDLRKY-------EVLQ-TLP----GHAKTLDFSQKG-LLA  156 (359)
Q Consensus       123 ------------d~~i~iwd~~~~-------~~~~-~~~----~~i~~~~~s~~g-l~~  156 (359)
                                  ...|.-|++...       +.+. .++    .....|+|.|+| |++
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv  159 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY  159 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence                        235666665321       1122 222    235889999999 444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.12  E-value=0.058  Score=49.44  Aligned_cols=110  Identities=10%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             EEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEE--EEEec------CCCCeEEEEEcCC---CCEEEEEe
Q 041916           12 LHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV--GNFRT------GLGRTDVMRVNPF---NGVVSLGH   79 (359)
Q Consensus        12 ~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~sp~---~~~l~sg~   79 (359)
                      +..+. +-..++.|+|.|+|.++++-...+.|.+++..++...  ..+..      ....+..|+|+|+   +..|+.+.
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            33343 3445699999999997776544457988887656532  22221      2345779999995   44444433


Q ss_pred             C-------------CCeEEEEeCCCC--c-----ceEE-Ee-ccCCCeEEEEEcCCCCEEEEEe
Q 041916           80 S-------------GGTVTMWKPTTA--A-----PLIK-ML-CHQGPVSALAFHPNGHLMATSG  121 (359)
Q Consensus        80 ~-------------dg~v~lwd~~~~--~-----~~~~-~~-~h~~~v~~i~~~~~~~~l~~~~  121 (359)
                      .             ...|.-|++...  .     .+.. +. ........|+|.|||.+.++.+
T Consensus        99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            2             234666665322  1     1111 21 1122468899999998777655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.12  E-value=0.076  Score=45.53  Aligned_cols=139  Identities=12%  Similarity=0.051  Sum_probs=72.5

Q ss_pred             CCCEEEEEecC----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcceE
Q 041916           29 NHFLLASINKF----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAAPLI   96 (359)
Q Consensus        29 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~~~~   96 (359)
                      ++.+++.|+.+    ..+.+||+.++.-...  +........++.+  ++.+++.|+.+      ..+.+||+.+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            66777777754    6789999988753322  2111111222222  56777777765      458899988764211


Q ss_pred             E--EeccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCce--eeEeccCC--ceeEEEcCCc-eEEEEcC
Q 041916           97 K--MLCHQGPVSALAFHPNGHLMATSGK---------ECKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG-LLAVGTG  160 (359)
Q Consensus        97 ~--~~~h~~~v~~i~~~~~~~~l~~~~~---------d~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g-l~~~~~d  160 (359)
                      .  +......-.++.+  ++.+++.|+.         -..+.+||+.+..  .+..++.+  -.+++...+. ++.+|.+
T Consensus       133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  210 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN  210 (306)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence            1  1111111122222  5566666653         3458899998754  23333221  1233333333 4444432


Q ss_pred             -----CcEEEEcCCCC
Q 041916          161 -----SFVQILGDFSG  171 (359)
Q Consensus       161 -----~~i~i~d~~~~  171 (359)
                           ..+.+||+.+.
T Consensus       211 ~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          211 GLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEBCCEEEEETTTT
T ss_pred             CCCCCceEEEeeCCCC
Confidence                 46888987654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.99  E-value=0.27  Score=46.97  Aligned_cols=150  Identities=7%  Similarity=-0.008  Sum_probs=95.6

Q ss_pred             CeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEE
Q 041916           20 AVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~   97 (359)
                      .+.+++|.+.+..|+.+ ...+.|..+++........+......+..+++.+.+ +++++-+..+.|.+.++.... ...
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~  428 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKI  428 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEE
Confidence            35789999865555544 457889999987544333344444567899998754 455555677899999987543 333


Q ss_pred             Ee-ccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-CCcEEEEcC
Q 041916           98 ML-CHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-GSFVQILGD  168 (359)
Q Consensus        98 ~~-~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d~~i~i~d~  168 (359)
                      +. ..-...++|+++|...+|+.+..  ...|...++..........   ..++.|++++++  ++.+.. .+.|..+++
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            32 33446789999997555555542  3677777775432221112   356889999855  555554 478888886


Q ss_pred             CC
Q 041916          169 FS  170 (359)
Q Consensus       169 ~~  170 (359)
                      ..
T Consensus       509 dG  510 (619)
T 3s94_A          509 DG  510 (619)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.90  E-value=0.15  Score=43.81  Aligned_cols=162  Identities=4%  Similarity=-0.041  Sum_probs=91.7

Q ss_pred             EEEEecCCCEEEEEe----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEE
Q 041916           23 KLQFLRNHFLLASIN----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        23 ~l~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~~   97 (359)
                      +..|++++..|+-..    ....|...++.. .....+..+..    .+|+|++..|+-.+. ...|.+.++..+.....
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l  182 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF  182 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence            447888888888765    345677777763 33444544432    456778887776654 67788888876543332


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEc--CCcEEEEcCCCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATSGKE--CKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGT--GSFVQILGDFSG  171 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~--d~~i~i~d~~~~  171 (359)
                      +.   +... ..++|++.+|+-...+  ..|..-++............+  ..|+|++  ++.+..  .+.|...++. +
T Consensus       183 ~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G  255 (302)
T 3s25_A          183 YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFYQRGGDNPALCVVKND-G  255 (302)
T ss_dssp             EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEEEECSSSCEEEEEETT-S
T ss_pred             eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEEEECCCCcEEEEEECC-C
Confidence            22   3333 3466999998877643  367666776544322223344  3477777  444332  3567776643 3


Q ss_pred             CCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          172 SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                       .....+...      .+.  .+++.+.+|.-..
T Consensus       256 -~~r~~l~~~------~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          256 -TGFKELAKG------EFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             -CCCEEEEES------CEE--EEEECSSEEEEEE
T ss_pred             -CccEEeeCC------ccc--eEEEeCCEEEEEE
Confidence             222333222      232  4566777665544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.90  E-value=0.13  Score=44.04  Aligned_cols=139  Identities=11%  Similarity=0.085  Sum_probs=71.1

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcceE
Q 041916           29 NHFLLASINKF-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTAAPLI   96 (359)
Q Consensus        29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~~~~~   96 (359)
                      ++.+++.|+.+     ..+.+||+.+.+-...  +........++.  -++.+++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            66777777754     4688999987653222  111111122222  2567777777553     47788887654211


Q ss_pred             --EEeccCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEEcCCcee--eEeccCC--ceeEEEcCCc-eEEEEcC--
Q 041916           97 --KMLCHQGPVSALAFHPNGHLMATSGKE-------CKIKIWDLRKYEV--LQTLPGH--AKTLDFSQKG-LLAVGTG--  160 (359)
Q Consensus        97 --~~~~h~~~v~~i~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~--~~~~~~~--i~~~~~s~~g-l~~~~~d--  160 (359)
                        .+........++.+  ++.+++.|+.+       ..+.+||+.+.+-  +..++.+  -.+++...+. ++.+|.+  
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  216 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP  216 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred             cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC
Confidence              11111111122222  55666666532       3588999987543  3333221  1233333333 4445443  


Q ss_pred             ---CcEEEEcCCCC
Q 041916          161 ---SFVQILGDFSG  171 (359)
Q Consensus       161 ---~~i~i~d~~~~  171 (359)
                         +.+.+||+.+.
T Consensus       217 ~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          217 LVRKSVEVYDPTTN  230 (302)
T ss_dssp             SBCCCEEEEETTTT
T ss_pred             cccceEEEEeCCCC
Confidence               46888987654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.89  E-value=0.058  Score=47.64  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc---eEEE----eccCCCeEEEEEcCC---CCEEEEEe-C------
Q 041916           61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAP---LIKM----LCHQGPVSALAFHPN---GHLMATSG-K------  122 (359)
Q Consensus        61 ~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~---~~~~----~~h~~~v~~i~~~~~---~~~l~~~~-~------  122 (359)
                      .....|+|.|+|+ +++ +...|.|.+++.. +..   +..+    ....+....|+|+|+   +.+|+++. .      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4578999999998 554 5567999999853 321   1111    112345689999996   55555443 2      


Q ss_pred             -CCeEEEEEcCCc-------eee-Eecc------CCceeEEEcCCc-eEEEE
Q 041916          123 -ECKIKIWDLRKY-------EVL-QTLP------GHAKTLDFSQKG-LLAVG  158 (359)
Q Consensus       123 -d~~i~iwd~~~~-------~~~-~~~~------~~i~~~~~s~~g-l~~~~  158 (359)
                       ...|..|++...       +.+ ..++      .....|+|.|+| |+++.
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence             235777766432       111 1222      124689999999 54443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.86  E-value=0.24  Score=44.52  Aligned_cols=169  Identities=10%  Similarity=0.111  Sum_probs=107.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGL----GRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~sp~~~~   74 (359)
                      ++.|+| .+...+..+.-..++.--.|-.+. .|+-.+ +..|+-|++.. ..++..|.-|.    ..|.....+++.++
T Consensus        87 ~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW  164 (494)
T 1bpo_A           87 TLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW  164 (494)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred             eEEEEchHHhhhhcceecCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCe
Confidence            367888 677777777766676555665443 444443 45899999964 34666666543    45777778888887


Q ss_pred             EEEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCC---CeEEEEEcCCc---e---
Q 041916           75 VSLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKE---CKIKIWDLRKY---E---  135 (359)
Q Consensus        75 l~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d---~~i~iwd~~~~---~---  135 (359)
                      ++..+       -.|.+.+|....+ .-+.+.+|.+....+.+..+   ...++.+...   +.+.+.++...   .   
T Consensus       165 ~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f  243 (494)
T 1bpo_A          165 LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF  243 (494)
T ss_dssp             EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred             EEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence            66543       2478899997644 45567788765544443221   1244444432   78999998542   1   


Q ss_pred             ---eeEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916          136 ---VLQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       136 ---~~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~  172 (359)
                         .+..+      ..-..++..|+.-  ++..+.-|.|++||+.++.
T Consensus       244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence               11111      1234677777765  7888899999999998883

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.84  E-value=0.35  Score=49.74  Aligned_cols=210  Identities=13%  Similarity=0.078  Sum_probs=120.1

Q ss_pred             eEEEe-CCCcEEEEecc--CCCeEEEEEec---C-CCEEEEEe----------cCCeEEEEECCCCeEEEEEe-cCCCCe
Q 041916            2 PYIYN-RDGTELHCLKE--HGAVLKLQFLR---N-HFLLASIN----------KFGQLRYQDVTMGEIVGNFR-TGLGRT   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~--h~~~~~l~~s~---~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v   63 (359)
                      |+++| .+.+.+..+.-  ...+.|++...   + ..+|++|.          ..|.|.+|++..++...... ...++|
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v  888 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV  888 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence            67888 66777665543  33345555432   2 46888776          34889999997554322221 235788


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCceeeEe--
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL--RKYEVLQT--  139 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~--  139 (359)
                      ++++-- +| +|++|- ...|++|++...+.+..-..+-..|..+.....++++++|..-..|.++..  ..++....  
T Consensus       889 ~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~  965 (1158)
T 3ei3_A          889 YSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR  965 (1158)
T ss_dssp             EEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred             EEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence            888743 34 455443 468999999866544411111112333333335778988887776666543  33332221  


Q ss_pred             -c-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC------Ccccee-ecccCCCCcceEEEEE---eeC---------
Q 041916          140 -L-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS------HNYSRY-MGHSMVKGYQIGKVSF---RPY---------  197 (359)
Q Consensus       140 -~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~------~~~~~~-~~~~~~~~~~v~~~~~---~p~---------  197 (359)
                       + +..++++.+-.++ ++++..+|.|.++......      ..+... .-|   -+..|+++.-   .+.         
T Consensus       966 D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~~~~~~~~~~~~ 1042 (1158)
T 3ei3_A          966 DFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLVMQNLGETSTPT 1042 (1158)
T ss_dssp             CCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSCCC-------CE
T ss_pred             ecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeeecCCCccccccc
Confidence             1 4467888887667 7777778999888643311      111111 112   2346777652   222         


Q ss_pred             CCEEEEEcCCCeEEEEEcCC
Q 041916          198 EDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       198 ~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ...++.|+.+|.+.++++-+
T Consensus      1043 ~~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A         1043 QGSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp             EEEEEEEETTSCEEEEEEEC
T ss_pred             cceEEEEecCCEEEEEEEcC
Confidence            23477788888888877764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.82  E-value=0.043  Score=48.47  Aligned_cols=139  Identities=14%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             CCeEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCC---CCEEEEE-eC------
Q 041916           19 GAVLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPF---NGVVSLG-HS------   80 (359)
Q Consensus        19 ~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~---~~~l~sg-~~------   80 (359)
                      ..+..|+|.|+|. +++ +...|.|++++.. +.....+.       ........|+|+|+   +..|+.+ +.      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4569999999998 554 4567999999853 43221111       12345689999996   4444433 22      


Q ss_pred             -CCeEEEEeCCCCc----ceEE-Eecc------CCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCce
Q 041916           81 -GGTVTMWKPTTAA----PLIK-MLCH------QGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRKYE  135 (359)
Q Consensus        81 -dg~v~lwd~~~~~----~~~~-~~~h------~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~  135 (359)
                       ...|..|++....    .... +..-      ...-..|+|.|||.+.++.+.             .|.|.-+|....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             2356667665331    1111 1111      112357999999965555433             2467777765321


Q ss_pred             --------------eeEec-cCCceeEEEcC-Cc-eEEEEc
Q 041916          136 --------------VLQTL-PGHAKTLDFSQ-KG-LLAVGT  159 (359)
Q Consensus       136 --------------~~~~~-~~~i~~~~~s~-~g-l~~~~~  159 (359)
                                    .+... -.....++|+| +| ++++..
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~  216 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH  216 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence                          11111 12468899999 67 666554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.052  Score=47.47  Aligned_cols=111  Identities=9%  Similarity=0.110  Sum_probs=73.5

Q ss_pred             CEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEE--cC-CCCEEEEE-eCCCeEEEEeCCCCcceEEEec----c
Q 041916           31 FLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRV--NP-FNGVVSLG-HSGGTVTMWKPTTAAPLIKMLC----H  101 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--sp-~~~~l~sg-~~dg~v~lwd~~~~~~~~~~~~----h  101 (359)
                      .+++.++.||.|.-+|..+|+.+..+... ..++....-  .+ ++..++.. +.||.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999999998764 123222110  01 22333333 5899999999888754443331    1


Q ss_pred             CCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEEcCCceeeEecc
Q 041916          102 QGPVSA---LAF-H----PNGHLMATSGKECKIKIWDLRKYEVLQTLP  141 (359)
Q Consensus       102 ~~~v~~---i~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  141 (359)
                      ..++..   ..+ .    ..+..+++|+.+|.+...|+++|+.+..+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            222221   001 0    145578999999999999999999999883

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.59  E-value=0.11  Score=44.59  Aligned_cols=165  Identities=15%  Similarity=0.057  Sum_probs=80.8

Q ss_pred             eEEEeCCCcEEEEeccCCC--e-EEEEEecCCCEEEEEec----C-----CeEEEEECCCCeEEEE--EecCCCCeEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGA--V-LKLQFLRNHFLLASINK----F-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMR   67 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~--~-~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~   67 (359)
                      +++||.....-..+..-..  . .+++. .++.+++.|+.    +     ..+.+||+.+..-...  +........++.
T Consensus        41 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  119 (308)
T 1zgk_A           41 LEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV  119 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             EEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE
Confidence            5667733333333332221  1 33333 25667777765    2     4688999887653221  111111122222


Q ss_pred             EcCCCCEEEEEeCC-----CeEEEEeCCCCcce--EEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916           68 VNPFNGVVSLGHSG-----GTVTMWKPTTAAPL--IKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE  135 (359)
Q Consensus        68 ~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  135 (359)
                      +  ++.+++.|+.+     ..+.+||+.+.+-.  ..+......-.++.+  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       120 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          120 I--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             E--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             E--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence            2  56677776643     35888898765321  111111111122333  56666666654     468899988754


Q ss_pred             e--eEeccCC--ceeEEEcCCc-eEEEEcC-----CcEEEEcCCCC
Q 041916          136 V--LQTLPGH--AKTLDFSQKG-LLAVGTG-----SFVQILGDFSG  171 (359)
Q Consensus       136 ~--~~~~~~~--i~~~~~s~~g-l~~~~~d-----~~i~i~d~~~~  171 (359)
                      -  +..++.+  -.+++...+. ++.+|.+     ..+.+||+.+.
T Consensus       196 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            3  2222211  1233333333 4445443     56889987654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.52  E-value=0.16  Score=43.34  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcceE
Q 041916           29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAPLI   96 (359)
Q Consensus        29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~~   96 (359)
                      ++.+++.|+.+     ..+.+||+.+..-..  .+........++.  -++.+++.|+.+     ..+.+||+.+.+-..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56777777643     468999988765332  2221111222222  256777777654     358889987653221


Q ss_pred             E--EeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916           97 K--MLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE  135 (359)
Q Consensus        97 ~--~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  135 (359)
                      .  +........++.+  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       190 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            1  1111111122222  56666777653     468999998754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.50  E-value=0.62  Score=44.49  Aligned_cols=190  Identities=11%  Similarity=-0.036  Sum_probs=110.5

Q ss_pred             CeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 041916           20 AVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRT------GLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTT   91 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~   91 (359)
                      .+..++|.+....|+.+. ..+.|..+++........+..      ....+..|++.+.+. ++.+-+..+.|.+.++. 
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-  419 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-  419 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence            357899998766665554 467888888764332223322      234688999998765 44566677899999986 


Q ss_pred             CcceEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCC--eEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-CC
Q 041916           92 AAPLIKML-CHQGPVSALAFHP-NGHLMATSGKEC--KIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-GS  161 (359)
Q Consensus        92 ~~~~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d~  161 (359)
                      +.....+. ......++|+++| .|.++.+-....  .|...++..........   ..++.|++++.+  ++.+.. .+
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~  499 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR  499 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCC
Confidence            44443433 3345679999999 454444433232  57666765432222222   346899999875  555544 47


Q ss_pred             cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      .|..+++...  ....+...   ......+++... +.++.+-...+.+..+...
T Consensus       500 ~I~~~~~dG~--~r~~~~~~---~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~  548 (628)
T 4a0p_A          500 RIESSDLSGA--NRIVLEDS---NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMT  548 (628)
T ss_dssp             EEEEEETTSC--SCEEEECS---SCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEEEEeCCCC--ceEEEEcC---CCCCcEEEEEEC-CEEEEEECCCCeEEEEECc
Confidence            8999986332  23333321   111356676654 4444444444544444433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.49  E-value=0.17  Score=43.12  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CCCEEEEEecCC-----eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCcc
Q 041916           29 NHFLLASINKFG-----QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-------GTVTMWKPTTAAP   94 (359)
Q Consensus        29 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-------g~v~lwd~~~~~~   94 (359)
                      ++.+++.|+.++     .+.+||+.+..-...  +....... +++. -++.+++.|+.+       ..+.+||+.+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            567777777553     578899887653322  11111111 2222 256667766542       3488899876532


Q ss_pred             eE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916           95 LI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE  135 (359)
Q Consensus        95 ~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  135 (359)
                      ..  .+........++.+  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            11  11111111122222  56667777654     368999998754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.44  E-value=0.49  Score=42.60  Aligned_cols=167  Identities=9%  Similarity=0.075  Sum_probs=101.3

Q ss_pred             eEEEeC--CCcEEEEeccCCCe-----EEEEEecCCCEEEEEec-------CCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916            2 PYIYNR--DGTELHCLKEHGAV-----LKLQFLRNHFLLASINK-------FGQLRYQDVTMGEIVGNFRTGLGRTDVMR   67 (359)
Q Consensus         2 v~iwd~--~g~~~~~l~~h~~~-----~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~   67 (359)
                      ||-|+-  +..+++.+..|..-     ..-..+++.+.++..|-       .|.+.+|.++.+ ....+.+|.+....+.
T Consensus       127 VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~  205 (494)
T 1bpo_A          127 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK  205 (494)
T ss_dssp             EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEE
T ss_pred             eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEe
Confidence            788983  34577888877652     33344667777665432       478899998754 4566777755444443


Q ss_pred             EcCCC---CEEEEEeC---CCeEEEEeCCCC---cc-e--EEEe------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916           68 VNPFN---GVVSLGHS---GGTVTMWKPTTA---AP-L--IKML------CHQGPVSALAFHPNGHLMATSGKECKIKIW  129 (359)
Q Consensus        68 ~sp~~---~~l~sg~~---dg~v~lwd~~~~---~~-~--~~~~------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iw  129 (359)
                      ...+.   .+++.+..   .+.+++.++...   .+ .  ....      .-.+---++.+++.-..++..+.-|.|.+|
T Consensus       206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ly  285 (494)
T 1bpo_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY  285 (494)
T ss_dssp             CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEE
Confidence            32111   23444443   378999998543   11 1  1111      113334578888888889999999999999


Q ss_pred             EcCCceeeEec---cCCceeEEEcC-Cc-eEEEEcCCcEEEEcCC
Q 041916          130 DLRKYEVLQTL---PGHAKTLDFSQ-KG-LLAVGTGSFVQILGDF  169 (359)
Q Consensus       130 d~~~~~~~~~~---~~~i~~~~~s~-~g-l~~~~~d~~i~i~d~~  169 (359)
                      |+.++.++..-   ...|..-+.+. .+ ++++...|.|.-..+.
T Consensus       286 DleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             ecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            99999987655   33443333322 22 7777766766555443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.20  E-value=0.39  Score=41.23  Aligned_cols=143  Identities=11%  Similarity=0.052  Sum_probs=71.8

Q ss_pred             EEecCCCEEEEEec-----C------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC--------Ce
Q 041916           25 QFLRNHFLLASINK-----F------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG--------GT   83 (359)
Q Consensus        25 ~~s~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d--------g~   83 (359)
                      +...++.+++.|+.     .      ..+.+||+.+++-...  +...... .+++.. ++.+++.|+.+        ..
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CCEEEEEeCCcCCCCCcccce
Confidence            33456777787773     1      2378899887753221  1111111 122222 55667777632        35


Q ss_pred             EEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEEcCCce--eeEeccCC--ceeEEEcC
Q 041916           84 VTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGK-E-----CKIKIWDLRKYE--VLQTLPGH--AKTLDFSQ  151 (359)
Q Consensus        84 v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~  151 (359)
                      +.+||+.+.+-  +..+......-.++.  -++.+++.|+. +     ..+.+||+.+.+  .+..++.+  -.+++...
T Consensus       119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  196 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD  196 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             EEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence            88899876531  111111111112222  35566666665 2     468999998754  23333221  12333333


Q ss_pred             Cc-eEEEEcCC-----cEEEEcCCCC
Q 041916          152 KG-LLAVGTGS-----FVQILGDFSG  171 (359)
Q Consensus       152 ~g-l~~~~~d~-----~i~i~d~~~~  171 (359)
                      +. ++.+|.++     .+.+||+.+.
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CEEEEEeccCCCCccceEEEEECCCC
Confidence            33 55566543     5888987654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.19  E-value=1  Score=43.92  Aligned_cols=177  Identities=11%  Similarity=0.008  Sum_probs=100.7

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP   94 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~   94 (359)
                      +.++...+++.+.+ |+.. -|..+|..++.... +...      ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus       148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI  223 (758)
T ss_dssp             EEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred             EEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence            47777777777655 4444 47788987765432 2211      124788888777765555554 4588889876643


Q ss_pred             eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe---------c-cCCceeEEEcCCc-eEEEEcCCcE
Q 041916           95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT---------L-PGHAKTLDFSQKG-LLAVGTGSFV  163 (359)
Q Consensus        95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------~-~~~i~~~~~s~~g-l~~~~~d~~i  163 (359)
                      ..........|.++...++|.+.+. +. +-+.++|..+......         + ...|.++....+| +.+++..| +
T Consensus       224 ~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l  300 (758)
T 3ott_A          224 KQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-I  300 (758)
T ss_dssp             EEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-E
T ss_pred             EeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-c
Confidence            2211112345888988888876554 44 4588888876543211         1 1247888888888 77777666 5


Q ss_pred             EEEcCCCCCCccceeec---ccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          164 QILGDFSGSHNYSRYMG---HSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      .++.. ..  ....+..   ........|.++.-..+|.+.+. +.+|
T Consensus       301 ~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G  344 (758)
T 3ott_A          301 SLSRY-NS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG  344 (758)
T ss_dssp             EEECC-CC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE
T ss_pred             ccccc-CC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc
Confidence            55542 21  1111110   00002235788877777765443 3444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.97  E-value=1.3  Score=43.17  Aligned_cols=182  Identities=10%  Similarity=-0.027  Sum_probs=105.2

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-c-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-T-----GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA--   92 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~--   92 (359)
                      +.++.-.++|.+-+ |+ ++-|..||..+++...-.. .     ....|.++...+++.+.+ |+..+-|.++|..+.  
T Consensus       375 v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~  451 (758)
T 3ott_A          375 IRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQ  451 (758)
T ss_dssp             EEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccc
Confidence            46676666776544 44 4569999998876543221 1     123578888777776554 665555788885421  


Q ss_pred             ---cce---EEEec----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eE
Q 041916           93 ---APL---IKMLC----HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LL  155 (359)
Q Consensus        93 ---~~~---~~~~~----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~  155 (359)
                         ...   ..+..    ....|.+|...++|.+.+.++..+-|..+|..+++.....      ...+.++....+| +.
T Consensus       452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW  531 (758)
T 3ott_A          452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW  531 (758)
T ss_dssp             CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE
T ss_pred             cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE
Confidence               111   11111    1235899999999987764343455888999876544322      1246788888888 66


Q ss_pred             EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE
Q 041916          156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS  211 (359)
Q Consensus       156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~  211 (359)
                      .++. +-|..|+..+..  ...+..... +...|.++... +| .|-.++..|...
T Consensus       532 igt~-~Gl~~~~~~~~~--~~~~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~  581 (758)
T 3ott_A          532 VGFH-GGVMRINPKDES--QQSISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWI  581 (758)
T ss_dssp             EEET-TEEEEECC--CC--CCBCCCCC----CCEEEEEEE-TT-EEEEEESSCEEE
T ss_pred             EEec-CceEEEecCCCc--eEEecccCC-CccceEEEEEC-CC-CEEEECCCCeEE
Confidence            6665 458888865442  222211111 23357777653 55 455556777543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.92  E-value=0.42  Score=40.76  Aligned_cols=139  Identities=10%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             CCCEEEEEecC------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCC
Q 041916           29 NHFLLASINKF------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTT   91 (359)
Q Consensus        29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~   91 (359)
                      ++.+++.|+.+      ..+.+||+.+..-...  +........++.  -++.+++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            66777777754      5689999987753322  111111112222  25666666653         34588999877


Q ss_pred             CcceE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce--eeEeccCC--ceeEEEcCCc-eEEEEc
Q 041916           92 AAPLI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG-LLAVGT  159 (359)
Q Consensus        92 ~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g-l~~~~~  159 (359)
                      .+-..  .+......-..+.+  ++.+++.|+.+     ..+.+||+.+.+  .+..++.+  -.+++...+. ++.+|.
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~  256 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGF  256 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECB
T ss_pred             CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCc
Confidence            63211  11111111122222  56666666543     468899998754  33333211  1222222222 444553


Q ss_pred             C-----CcEEEEcCCCC
Q 041916          160 G-----SFVQILGDFSG  171 (359)
Q Consensus       160 d-----~~i~i~d~~~~  171 (359)
                      +     +.+.+||+.+.
T Consensus       257 ~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          257 QGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CSSSBCCEEEEEETTTT
T ss_pred             CCCeeeeeEEEEcCCCC
Confidence            3     45777776543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.81  E-value=2  Score=44.10  Aligned_cols=185  Identities=11%  Similarity=-0.054  Sum_probs=101.9

Q ss_pred             CCCeEEEEEecC------CCEEEEEec-CCeEEEEECCCCeEEEEEecC-CCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 041916           18 HGAVLKLQFLRN------HFLLASINK-FGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVN--PFNGVVSLGHSGGTVTMW   87 (359)
Q Consensus        18 h~~~~~l~~s~~------~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s--p~~~~l~sg~~dg~v~lw   87 (359)
                      ...+.|+++.|.      +.++|.|.. |++|+|+++.+.+.+....-. ...+.++.+.  ....+|.+|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            345689998763      368999986 999999999987766543321 1233444332  233578899999997655


Q ss_pred             eC--CCCcceEE--EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc-eeEEEc----CCceEEE
Q 041916           88 KP--TTAAPLIK--MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA-KTLDFS----QKGLLAV  157 (359)
Q Consensus        88 d~--~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i-~~~~~s----~~gl~~~  157 (359)
                      .+  .++.....  ..-...++.-..|...|..-+.++.+....+|--...-....+. ..+ ....|+    |+|++.+
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~  712 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA  712 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE
Confidence            54  44543221  11123455544554444443333334554455433221222222 123 333453    4455544


Q ss_pred             EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      + ++.++|..+..-.........    -+..+..++++|..+.++++..+
T Consensus       713 ~-~~~LrI~~i~~~~~~~~~~ip----L~~Tprri~y~~~~~~~~v~~~~  757 (1158)
T 3ei3_A          713 N-NSTLTIGTIDEIQKLHIRTVP----LYESPRKICYQEVSQCFGVLSSR  757 (1158)
T ss_dssp             C-SSCEEEEEECCSSSEEEEEEE----CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred             c-CCceEEEEecccCCeeEEEEe----CCCCceEEEEcCCCCEEEEEEEe
Confidence            4 566888875433211111111    23378999999999887765543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.76  E-value=0.42  Score=41.03  Aligned_cols=103  Identities=9%  Similarity=0.073  Sum_probs=55.2

Q ss_pred             CCCEEEEEecC--------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCC
Q 041916           29 NHFLLASINKF--------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHS-G-----GTVTMWKPTTA   92 (359)
Q Consensus        29 ~~~~l~s~~~d--------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~-d-----g~v~lwd~~~~   92 (359)
                      ++.+++.|+.+        ..+.+||+.+++-..  .+...... .+++. -++.+++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56666777632        468999998765322  11111111 12222 35567777765 2     35889998765


Q ss_pred             cc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCce
Q 041916           93 AP--LIKMLCHQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKYE  135 (359)
Q Consensus        93 ~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~  135 (359)
                      +-  +..+......-.++.+  ++.+++.|+.++     .+.+||+.+.+
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            31  1111111111122222  566777777554     58889998754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.50  E-value=0.48  Score=40.50  Aligned_cols=103  Identities=10%  Similarity=0.038  Sum_probs=55.7

Q ss_pred             CCCEEEEEecC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcce-
Q 041916           29 NHFLLASINKF-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAPL-   95 (359)
Q Consensus        29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~-   95 (359)
                      ++.+++.|+.+     ..+.+||+.+..-...  +........++.+  ++.+++.|+.+     ..+.+||+.+.+-. 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            66777776643     4688999987653221  1111111222222  56777777654     45888998765321 


Q ss_pred             -EEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916           96 -IKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE  135 (359)
Q Consensus        96 -~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  135 (359)
                       ..+........++.+  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence             111111111222333  56666777654     468999998754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.44  E-value=1.1  Score=38.39  Aligned_cols=142  Identities=13%  Similarity=0.047  Sum_probs=70.2

Q ss_pred             EecCCCEEEEEec----CC-------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-------CeEE
Q 041916           26 FLRNHFLLASINK----FG-------QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-------GTVT   85 (359)
Q Consensus        26 ~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-------g~v~   85 (359)
                      ...++.+++.|+.    ++       .+.+||..+++-...  +...... .+++.. ++.+++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEE
Confidence            3456777888873    11       277889887653221  1111111 122222 56677777754       2478


Q ss_pred             EEeCCCCcceEEEeccCCCe--EEEEEcCCCCEEEEEeC------CCeEEEEEcCCce--eeEeccCC--ceeEEEcCCc
Q 041916           86 MWKPTTAAPLIKMLCHQGPV--SALAFHPNGHLMATSGK------ECKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG  153 (359)
Q Consensus        86 lwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g  153 (359)
                      +||+.+.+-.. +...+.+.  .+++. .++.+++.|+.      -..+.+||+.+.+  .+..++.+  -.+++...+.
T Consensus       131 ~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  208 (318)
T 2woz_A          131 CYDPVAAKWSE-VKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK  208 (318)
T ss_dssp             EEETTTTEEEE-ECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred             EEeCCCCCEeE-CCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCE
Confidence            88887653211 11111110  11222 35666666653      2358999998754  33333221  1233333333


Q ss_pred             -eEEEEcC-----CcEEEEcCCCC
Q 041916          154 -LLAVGTG-----SFVQILGDFSG  171 (359)
Q Consensus       154 -l~~~~~d-----~~i~i~d~~~~  171 (359)
                       ++.+|.+     ..+.+||+.+.
T Consensus       209 iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          209 IVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEEcCcCCCCccceEEEEECCCC
Confidence             5555532     35778887654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.38  E-value=0.74  Score=44.58  Aligned_cols=113  Identities=14%  Similarity=0.041  Sum_probs=64.4

Q ss_pred             EEEEEec-CCCEEEEEecC------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCC
Q 041916           22 LKLQFLR-NHFLLASINKF------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWKPT   90 (359)
Q Consensus        22 ~~l~~s~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd~~   90 (359)
                      .+++..+ ++.+++.||.+      ..+.+||+.+..-...  +..... -.+++...++.+++.|+.++  .+.+||+.
T Consensus       443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~  521 (695)
T 2zwa_A          443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVT  521 (695)
T ss_dssp             CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETT
T ss_pred             eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECC
Confidence            4555554 77777887753      3688999987643221  111111 12333334778888887655  68999987


Q ss_pred             CCcceEE-----EeccCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEEEcCCce
Q 041916           91 TAAPLIK-----MLCHQGPVSALAFHPN-GHLMATSGK--E-----CKIKIWDLRKYE  135 (359)
Q Consensus        91 ~~~~~~~-----~~~h~~~v~~i~~~~~-~~~l~~~~~--d-----~~i~iwd~~~~~  135 (359)
                      +..-...     +........++.+..+ +.+++.||.  +     ..+.+||+.+..
T Consensus       522 t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            6532111     1111112233555655 556666665  2     468899998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.37  E-value=0.47  Score=49.16  Aligned_cols=168  Identities=10%  Similarity=0.112  Sum_probs=95.1

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecC----CCCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTG----LGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~sp~~~~l   75 (359)
                      +.|+| .+...+..+.-...+.--.|-.+. .|+-.+ +..|.-|++... .++..|.-|    ...|.....+++.+++
T Consensus        88 lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~  165 (1630)
T 1xi4_A           88 LQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWL  165 (1630)
T ss_pred             EEEeehHHhhhhcccccCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeE
Confidence            45666 444444444444445444554433 343333 458999999632 343334333    3457777778888876


Q ss_pred             EEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEc--C-CCCEEEEEeC---CCeEEEEEcCCc---eee--
Q 041916           76 SLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH--P-NGHLMATSGK---ECKIKIWDLRKY---EVL--  137 (359)
Q Consensus        76 ~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~--~-~~~~l~~~~~---d~~i~iwd~~~~---~~~--  137 (359)
                      +..|       -.|.+.+|.+..+ ..+.+.||.+....+...  + ....++.+..   .+.+.+-++...   .+.  
T Consensus       166 ~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~  244 (1630)
T 1xi4_A          166 LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP  244 (1630)
T ss_pred             EEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence            6433       4588999987644 334456666554444332  1 1223333322   268888888542   111  


Q ss_pred             ----Eec-c-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916          138 ----QTL-P-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       138 ----~~~-~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~  172 (359)
                          ..+ +     .-+.++..|+.-  ++..+.-|.|++||+.++.
T Consensus       245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             cccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence                111 1     124567777754  7778888999999998874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.29  E-value=0.67  Score=40.48  Aligned_cols=52  Identities=12%  Similarity=-0.016  Sum_probs=28.5

Q ss_pred             CCCEEEEEec-C---------CeEEEEECCCCeEEEEEecC-CCCe-EEEEEcCCCCEEEEEeCC
Q 041916           29 NHFLLASINK-F---------GQLRYQDVTMGEIVGNFRTG-LGRT-DVMRVNPFNGVVSLGHSG   81 (359)
Q Consensus        29 ~~~~l~s~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~v-~~~~~sp~~~~l~sg~~d   81 (359)
                      ++.+++.|+. +         ..+.+||+.+..-...-... .... .+++. .++.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5667777765 2         46899999876532211111 1111 22222 567788888754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.12  E-value=0.91  Score=38.92  Aligned_cols=104  Identities=11%  Similarity=0.091  Sum_probs=53.8

Q ss_pred             CCCEEEEEecC-------CeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCcc
Q 041916           29 NHFLLASINKF-------GQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPFNGVVSLGHS------GGTVTMWKPTTAAP   94 (359)
Q Consensus        29 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~sg~~------dg~v~lwd~~~~~~   94 (359)
                      ++.+++.|+.+       ..+.+||+.+.+-...-...... -.+++. .++.+++.|+.      -..+.+||+.+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            56677777754       35888998876533221111110 112222 35667777763      23588999887542


Q ss_pred             eE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916           95 LI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE  135 (359)
Q Consensus        95 ~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  135 (359)
                      ..  .+........++.+  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       188 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            11  11111111122222  56667777643     357788987754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.12  E-value=2.1  Score=39.83  Aligned_cols=67  Identities=10%  Similarity=0.027  Sum_probs=47.6

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------e-------eEec--cCCceeEEEcCCc--eEEEEcCCcEEE
Q 041916          104 PVSALAFHPNGHLMATSG-KECKIKIWDLRKYE------V-------LQTL--PGHAKTLDFSQKG--LLAVGTGSFVQI  165 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~------~-------~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i  165 (359)
                      ....+.++|||++++.++ .+.++.++|++...      .       +...  .-.....+|.++|  +.+.--|+.|.-
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            346788999999987766 57899999998521      1       1122  2245788999999  333447999999


Q ss_pred             EcCCC
Q 041916          166 LGDFS  170 (359)
Q Consensus       166 ~d~~~  170 (359)
                      |++..
T Consensus       404 Wni~~  408 (638)
T 3sbq_A          404 WNMEE  408 (638)
T ss_dssp             EEHHH
T ss_pred             EeccH
Confidence            99643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.24  E-value=1.4  Score=38.47  Aligned_cols=49  Identities=6%  Similarity=-0.270  Sum_probs=25.8

Q ss_pred             CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeC
Q 041916           40 GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHS------GGTVTMWKP   89 (359)
Q Consensus        40 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~------dg~v~lwd~   89 (359)
                      ..+.+||+.+..-..  .+......-.+++.. ++.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            579999998765332  222111111233332 4566666653      235777876

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.21  E-value=2.2  Score=36.01  Aligned_cols=125  Identities=13%  Similarity=0.024  Sum_probs=65.6

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916           39 FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA  118 (359)
Q Consensus        39 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~  118 (359)
                      ||.|..|-......+..-..-...|..++...+..  +.-. ||.|+.|-.+..-.+..-......|..|+...+. .++
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~  155 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA  155 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE
T ss_pred             CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE
Confidence            78888887653211110000123566666554332  2234 8999999755422111111123457777654432 233


Q ss_pred             EEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916          119 TSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS  170 (359)
Q Consensus       119 ~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~  170 (359)
                       -. ||.|..|-......+.   .....|..++......++. .+|.|+.|-...
T Consensus       156 -l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~  207 (282)
T 3qhy_B          156 -VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR  207 (282)
T ss_dssp             -EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred             -EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence             33 7899999765422111   1134567777666664444 689999997433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.78  E-value=2.6  Score=43.88  Aligned_cols=189  Identities=12%  Similarity=0.148  Sum_probs=106.1

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEEEecc-
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-AAPLIKMLCH-  101 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-~~~~~~~~~h-  101 (359)
                      .-.+|..+.+|.-+ ..++.|||+.+...+.++.-. .+|.--.|-.+..+ +.. .+..|+-|++.. ..|...+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcch
Confidence            34567777777654 679999999987777666643 45766677544433 322 234699999964 3455455544 


Q ss_pred             ---CCCeEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCceeeEeccCCceeE---EE----cCCceEEEE----cC
Q 041916          102 ---QGPVSALAFHPNGHLMATSG-------KECKIKIWDLRKYEVLQTLPGHAKTL---DF----SQKGLLAVG----TG  160 (359)
Q Consensus       102 ---~~~v~~i~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~i~~~---~~----s~~gl~~~~----~d  160 (359)
                         ...|..-..+++.++++..|       -.|.+.+|....+. -+.+.|+..++   ..    .|..+++.+    .+
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               34677777889999977654       23677777765421 11122322111   11    111133322    24


Q ss_pred             CcEEEEcCCCC---CCcc-----ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          161 SFVQILGDFSG---SHNY-----SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       161 ~~i~i~d~~~~---~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +.++|.++...   ....     ..+..... ...-..++..++...++..-+..|++.++...++
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~-~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCccc-ccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence            78899886432   1111     11111111 1112345666777777777777777777655443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.76  E-value=0.26  Score=45.78  Aligned_cols=110  Identities=13%  Similarity=0.028  Sum_probs=75.0

Q ss_pred             EEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCC------Ce-------EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916           11 ELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTM------GE-------IVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus        11 ~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~------~~-------~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      ....+.....+..+.++|||++++.++ .+.++.++|+..      ++       .+...... ......+|.++|....
T Consensus       315 ~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYT  393 (638)
T 3sbq_A          315 FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYT  393 (638)
T ss_dssp             SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEE
T ss_pred             eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEe
Confidence            344555566678999999999887665 488999999873      11       13344433 3456789999996666


Q ss_pred             EEeCCCeEEEEeCCCC----------cceEEEeccCCCeEEEEE------cCCCCEEEEEeC
Q 041916           77 LGHSGGTVTMWKPTTA----------APLIKMLCHQGPVSALAF------HPNGHLMATSGK  122 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~----------~~~~~~~~h~~~v~~i~~------~~~~~~l~~~~~  122 (359)
                      +-.-|..|.-|++...          ..+..+..|-.+- .+.-      .|||++|++.+.
T Consensus       394 tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          394 TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEES
T ss_pred             eeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecc
Confidence            7778999999998642          2345555554432 2333      579999999863

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.17  E-value=7.3  Score=39.16  Aligned_cols=37  Identities=16%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      .+.+++..++..++++.+.|+++++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677788888899999999999999999999988765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.31  E-value=0.21  Score=43.62  Aligned_cols=99  Identities=6%  Similarity=-0.005  Sum_probs=64.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEecc-CCCeEEEEEc--CCCCEEEEE--eCCCeEEEEEcCCceeeEec--cCCc-
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCH-QGPVSALAFH--PNGHLMATS--GKECKIKIWDLRKYEVLQTL--PGHA-  144 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h-~~~v~~i~~~--~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~--~~~i-  144 (359)
                      .+++.++.||.|.-+|..+|+....+... ..++....-.  +.+..++.+  +.||.|..+|..+|.....+  +.-+ 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999988887653 1222221100  112234433  58999999999888654444  1111 


Q ss_pred             -eeEEE------------cCCc-eEEEEcCCcEEEEcCCCC
Q 041916          145 -KTLDF------------SQKG-LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       145 -~~~~~------------s~~g-l~~~~~d~~i~i~d~~~~  171 (359)
                       .-+..            +.+| +++++.+|.+...|+.++
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG  131 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG  131 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTC
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC
Confidence             11221            2455 888999999999998887

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.14  E-value=2.8  Score=38.25  Aligned_cols=104  Identities=12%  Similarity=0.034  Sum_probs=59.9

Q ss_pred             CCeEEEEEecCCC-EEEEEecCCeEEEEECCCC---eEEEEEe---------cCCCCeEEEEEcCC----CCEEEEEeC-
Q 041916           19 GAVLKLQFLRNHF-LLASINKFGQLRYQDVTMG---EIVGNFR---------TGLGRTDVMRVNPF----NGVVSLGHS-   80 (359)
Q Consensus        19 ~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~sp~----~~~l~sg~~-   80 (359)
                      ..++.|+|.|++. .|+++...|.|++++....   ..+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4569999999985 3444567899999975422   1222221         11356789999996    333333221 


Q ss_pred             -C----------CeEEEEeCCCC----------cceEEEe--ccCCCeEEEEEcCCCCEEEEEeC
Q 041916           81 -G----------GTVTMWKPTTA----------APLIKML--CHQGPVSALAFHPNGHLMATSGK  122 (359)
Q Consensus        81 -d----------g~v~lwd~~~~----------~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~  122 (359)
                       +          ..|.-|.+..+          +.+..+.  ........|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444655421          1222222  11223578999999987776654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=91.98  E-value=9.4  Score=36.94  Aligned_cols=189  Identities=10%  Similarity=-0.027  Sum_probs=100.0

Q ss_pred             EEEE-EecCCCEEEEE-e----cCCeEEEEECCCCeEEE-EEe-cCCC------CeEEEEEcCCCCEEEEEe--------
Q 041916           22 LKLQ-FLRNHFLLASI-N----KFGQLRYQDVTMGEIVG-NFR-TGLG------RTDVMRVNPFNGVVSLGH--------   79 (359)
Q Consensus        22 ~~l~-~s~~~~~l~s~-~----~dg~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~sp~~~~l~sg~--------   79 (359)
                      ..+. ++|++.+++.+ |    ....|+++|+.+++.+. .|. .-.+      ....++|..+...+++..        
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            5565 88998876553 2    23589999999998763 111 0000      113458874444444321        


Q ss_pred             --CCCeEEEEeCCCCc--ceEEEeccCCCe-EEEEEcCCCCE-----EEEEeCC---CeEEEEEcCC--ceeeEec-cCC
Q 041916           80 --SGGTVTMWKPTTAA--PLIKMLCHQGPV-SALAFHPNGHL-----MATSGKE---CKIKIWDLRK--YEVLQTL-PGH  143 (359)
Q Consensus        80 --~dg~v~lwd~~~~~--~~~~~~~h~~~v-~~i~~~~~~~~-----l~~~~~d---~~i~iwd~~~--~~~~~~~-~~~  143 (359)
                        ....|+.|.+.+..  -...+.+....+ .++..++++.+     +++.+.+   ..+.+.|...  +...... +..
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  291 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD  291 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence              12468888876653  233344333332 34555666662     4444422   3566667653  3322222 222


Q ss_pred             ceeEEEcCCc-eEEE-----------EcCCcEEEEcCCCCC------CccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          144 AKTLDFSQKG-LLAV-----------GTGSFVQILGDFSGS------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       144 i~~~~~s~~g-l~~~-----------~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                       ..+..+.++ ++..           ...+.|...++....      .....+..+.  ....+.++.|..+ .++++..
T Consensus       292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          292 -ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT--ANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             -CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC--TTEEEEEEEECSS-CEEEEEE
T ss_pred             -ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC--CCCeEEEEEEECC-EEEEEEE
Confidence             223345555 3331           135678888865531      2223333332  3446888888875 5677777


Q ss_pred             CCCeEEEEE
Q 041916          206 SMGWSSILV  214 (359)
Q Consensus       206 ~dg~~~i~~  214 (359)
                      .+|...+.+
T Consensus       368 ~~~~~~l~~  376 (711)
T 4hvt_A          368 DNVVAKVVT  376 (711)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCEEEEEE
Confidence            777665544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.25  E-value=6.3  Score=35.91  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=35.9

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---cceEEEe---c------cCCCeEEEEEcCC
Q 041916           60 LGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTA---APLIKML---C------HQGPVSALAFHPN  113 (359)
Q Consensus        60 ~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~---~~~~~~~---~------h~~~v~~i~~~~~  113 (359)
                      ....+.|+|.|++. .|+++...|.|++++....   .++..+.   .      ..+....|+|+|+
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            34578999999996 4555678899999975422   1223221   1      1356789999996

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.50  E-value=8.5  Score=37.12  Aligned_cols=72  Identities=11%  Similarity=-0.014  Sum_probs=43.6

Q ss_pred             EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEE
Q 041916           22 LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNF-----RTGLGRTDVMRVNPF-NGVVSLGHS--G-----GTVTM   86 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~-~~~l~sg~~--d-----g~v~l   86 (359)
                      .+++...++.+++.||.++  .+.+||+.+..-...-     ........++.+..+ +.+++.|+.  +     ..+.+
T Consensus       493 h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~  572 (695)
T 2zwa_A          493 HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII  572 (695)
T ss_dssp             CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred             ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEE
Confidence            3444435788888887654  7999999886532211     111122233555555 667777765  2     35888


Q ss_pred             EeCCCCc
Q 041916           87 WKPTTAA   93 (359)
Q Consensus        87 wd~~~~~   93 (359)
                      ||+.+..
T Consensus       573 yd~~~~~  579 (695)
T 2zwa_A          573 FKYDAEN  579 (695)
T ss_dssp             EEECTTC
T ss_pred             EEccCCc
Confidence            9988765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.76  E-value=19  Score=36.22  Aligned_cols=38  Identities=8%  Similarity=-0.108  Sum_probs=32.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      .+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777888888899999999999999999998887754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.54  E-value=19  Score=30.20  Aligned_cols=141  Identities=16%  Similarity=0.059  Sum_probs=74.7

Q ss_pred             CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916           20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      .+..++....+. ++. . ||.|..|-......+..-......|..++...... ++. . ||.|..|-.+..-.+-.-.
T Consensus        25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            345555544333 232 4 89999998654221111111123566777654433 333 4 8999999755422111101


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916          100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS  170 (359)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~  170 (359)
                      .-...|..|+...+  +.+... ||.|+.|-....-.+.   .....|..++......++.. +|.|+.|-...
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~  168 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNY  168 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCC
Confidence            11346777776544  333334 8999999765422111   11335666666555544445 79999997443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.19  E-value=16  Score=37.64  Aligned_cols=37  Identities=16%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916          104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL  140 (359)
Q Consensus       104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  140 (359)
                      .+.+++..++..++++.+.|+++++||+.+++++.+.
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            3445666778899999999999999999999988775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 1e-15
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 7   RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV 65
           R+G        H   +  + F  N    A+ +     R  D+   + +  +        +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 66  MRV--NPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE 123
             V  +    ++  G+      +W    A     +  H   VS L    +G  +AT   +
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333

Query: 124 CKIKIWD 130
             +KIW+
Sbjct: 334 SFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 7e-12
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 6/154 (3%)

Query: 13  HCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN 72
                 G V+ L    +  L  S       +  DV  G     F       + +   P  
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238

Query: 73  GVVSLGHSGGTV--TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130
              + G    T      +                +++++F  +G L+     +    +WD
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 131 LRKYEVLQTLPGHAKT---LDFSQKGLLAVGTGS 161
             K +    L GH      L  +  G+    TGS
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGS 331

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 9e-07
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 8/226 (3%)

Query: 2   PYIYNRDGTELHCLKEHG-AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---R 57
               +    ++H +      V+   +  +   +A           ++   E         
Sbjct: 80  IIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139

Query: 58  TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM 117
            G            +  +       T  +W   T         H G V +L+  P+  L 
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199

Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAK---TLDFSQKGLLAVGTGSFVQILGDFSGSHN 174
            +   +   K+WD+R+    QT  GH      + F   G     TGS       F    +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRAD 258

Query: 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP 220
                         I  VSF     +L  G+     ++      + 
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
           H   + A+ +  +  L+ ++ ++ K+ IWD      +  +P  
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 6e-14
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 5/162 (3%)

Query: 1   YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60
                N+DGT +        V ++  +      A + +   +        E   +  +  
Sbjct: 147 RMVRPNQDGTLIASCSNDQTV-RVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 205

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
             ++  +       +  G    T+ MW  +T   L+ ++ H   V  + FH  G  + + 
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKT---LDFSQKG-LLAVG 158
             +  +++WD +    ++TL  H      LDF +    +  G
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 4e-12
 Identities = 16/118 (13%), Positives = 40/118 (33%)

Query: 13  HCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN 72
             + E       +  +    L S ++   ++  DV+ G  +            +  +   
Sbjct: 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 259

Query: 73  GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130
             +       T+ +W       +  +  H+  V++L FH     + T   +  +K+W+
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 87  WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
           W P        +  H+ PV+ + FHP   +M ++ ++  IK+WD    +  +TL GH
Sbjct: 3   WIPRPP-EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 9/220 (4%)

Query: 5   YNRDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT 63
           +     E + L  H   V ++ F     ++ S ++   ++  D   G+     +      
Sbjct: 3   WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 64  DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE 123
             +  +    +++   +  T+ +W       +  M  H   VS+++  PNG  + ++ ++
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 124 CKIKIWDLRKYEVLQTLPGHAKT---LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYM 179
             IK+W+++    ++T  GH +    +  +Q G L+A  +      +   +     +   
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 180 GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219
            H  V       +S+ P      I  + G  +      G 
Sbjct: 183 EHRHVVEC----ISWAPESSYSSISEATGSETKKSGKPGP 218

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 8e-13
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 19/150 (12%)

Query: 3   YIYNRDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG 61
           ++  R  +E      H  +V  + F R+   + S +    ++  ++       + +T   
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297

Query: 62  RTDVMRVNPFNGVVSL------------GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109
            T  +        V              G     V  W   +  PL+ +  H+  V ++A
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 357

Query: 110 ------FHPNGHLMATSGKECKIKIWDLRK 133
                   P  ++ AT   +CK +IW  +K
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 78  GHSGGTVTMWKPTT----AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
             +     ++ P         L K L H   V  + F  +G  +AT G     +++ +  
Sbjct: 34  KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSD 92

Query: 134 YEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILG-DFSGSHNY 175
             ++  L   +      +    +    S + I    FS    +
Sbjct: 93  GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 41  QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-------A 93
            +R  D+  G+         G T V         ++ G     V +W   T        +
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 94  PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
                  H+  V ++ F  +G  + +   +  +K+W+L+      
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLR--KYEVLQTLPGHAKT---LDFSQKGLL 155
              P+S  A++ +   +A      ++ I++    K+  +  L  H      +D++     
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215
            V T    +    ++      +     +        V + P E    +G      SI   
Sbjct: 66  IV-TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 216 GSGEPNFDSW 225
                 +   
Sbjct: 125 EQENDWWVCK 134

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 9e-08
 Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 69  NPFNGVVSLGHSGGTVTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGKECKI 126
           N     +++  +   V +++ +      + ++  H G V+ + + P+ + + T G +   
Sbjct: 16  NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75

Query: 127 KIWD 130
            +W 
Sbjct: 76  YVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 61  GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNG---- 114
           GR DV + +   G+ +               +A     L   H+  VS ++    G    
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341

Query: 115 HLMATSGKECKIKIWDLRKYE-VLQTL 140
               T+G +  + IWD+R  E  L+ L
Sbjct: 342 SQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 4/121 (3%)

Query: 79  HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
               TV +        +  +     P+ A+ F     L+A +G +C   ++         
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKL 278

Query: 139 TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
           +  G    LD  ++      T        D   S   S   G  +   ++          
Sbjct: 279 SFGGR---LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS 335

Query: 199 D 199
            
Sbjct: 336 G 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 66  MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK 125
           ++                +  W+    A  I        V +     +   + T   + K
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 126 IKIWDL 131
             ++++
Sbjct: 330 ATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK 145
                      ++  H+  V +L F   G    ++GK+  +  W       +      + 
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 146 --TLDFSQKG-LLAVGTG 160
             + D S     +  G+G
Sbjct: 309 VLSCDISVDDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 10/110 (9%)

Query: 82  GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL- 140
             +    P  A   I  L H   V A+        + T GK C +K+WD+        + 
Sbjct: 32  ALIGPGIPRHAR-QINTLNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVS 89

Query: 141 ----PGHAK---TLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSM 183
                       +      G   +  G    +      +         + 
Sbjct: 90  QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 3e-09
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
           H   ++AL+   +G  + ++  E  I  WD+      +  P  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 66  MRVNPFNGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKE 123
           +  +P N  ++ G    +V +W     +  P+I    H           N   + ++G++
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 124 CKIKIWDL 131
             IK W++
Sbjct: 290 SNIKFWNV 297

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 1/118 (0%)

Query: 26  FLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVT 85
           F  +    A+ +        D+  G+        L       +        +      + 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
            +       LIK          +AF   G  +   G    + +++    E ++ +   
Sbjct: 276 KYDLKQRK-LIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 8/138 (5%)

Query: 108 LAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK----TLDFSQKG--LLAVGTGS 161
            A       M  +     + + D+    V ++     K    T   +        +    
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 162 FVQILGDFSGSHNYSRYMGHSMVK--GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219
                 D     N       S+    G  +   +  P    +    +             
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 220 PNFDSWVANPFETSKQRR 237
           P  + +       +K  R
Sbjct: 122 PRLEVFSTADGLEAKPVR 139

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKT---LDFSQKGLLAV 157
           H   V         + + T   +  I+++D    + L  L GH      L ++  G+L  
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQ 188
           G+      + D         + GH+      
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-TLPGHA 144
                          H    +   F+ + +++  SG E +  I++LR  +++   +   A
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILV-SGSENQFNIYNLRSGKLVHANILKDA 324

Query: 145 KT---LDFSQKGLLAVGTG---SFVQILGDFS 170
                ++F  K L+A       SF++IL DFS
Sbjct: 325 DQIWSVNFKGKTLVAAVEKDGQSFLEIL-DFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW 129
           G     + ++       L+++  H G V AL +   G L++ S         
Sbjct: 29  GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 87  WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
           W+         +  H   V        G+ + +   +  +K+W     + L+TL GH
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 9e-08
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 32  LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL-GHSGGTVTMWKPT 90
           +L S N    ++  D+  G+ +   +        +    FN    +     GTV +W   
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 91  TAAPL-----IKMLCHQGPVSALAFHPNGHLMATSG----KECKIKIWDL 131
           T   +     ++     G V  +       + A       +E K+ + D 
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 13/162 (8%)

Query: 7   RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVM 66
              T LH L+ H   +         +  S +    +R  DV  G  +        ++   
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRVWDVETGNCIHTLTGH--QSLTS 221

Query: 67  RVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECK 125
            +   + ++  G++  TV +W   T   L  +       SA+     N + + TS  +  
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 126 IKIWDLRKYEVLQTLP-----GHAK---TLDFSQKG-LLAVG 158
           +K+WDL+  E ++ L      G       +  S    + AVG
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 3/86 (3%)

Query: 63  TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNG--HLMATS 120
             +  +           +   V +    T    +        + ++    +    L A S
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 121 GKECKIKIWDLRKYEVLQTLPGHAKT 146
             +  + I D    E L+++      
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 22/182 (12%), Positives = 42/182 (23%), Gaps = 25/182 (13%)

Query: 46  DVTMGEIVGNFRTGL---------GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96
           D   G ++G    G          G   +   +     ++ G     V ++ P T  P  
Sbjct: 34  DGEAGRVIGMIDGGFLPNPVVADDGSF-IAHASTVFSRIARGERTDYVEVFDPVTLLPTA 92

Query: 97  KMLCHQGPVSALAFHPNG---------HLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
            +     P   +  +P            L         + + DL      + L       
Sbjct: 93  DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152

Query: 148 DFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207
            F           +F     D S +       G   +   ++         +        
Sbjct: 153 IFPT------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206

Query: 208 GW 209
           G 
Sbjct: 207 GR 208

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 4/131 (3%)

Query: 18  HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77
             A       ++            L   D+  GE+       +                 
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR-A 255

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137
             +   +  +     A  IK +       ++    +G  +   G    +  +D    E  
Sbjct: 256 FGAYNVLESFDLEKNA-SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314

Query: 138 QTL--PGHAKT 146
             +  PG+A  
Sbjct: 315 GQVDLPGNASM 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 19/142 (13%), Positives = 35/142 (24%), Gaps = 5/142 (3%)

Query: 74  VVSLGHSGGTVTMWKPTTAAPL--IKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWD 130
           +++       + +      A    I +             P G    AT  K   +   D
Sbjct: 4   ILAPARPD-KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 131 LRKYEVLQTLPGHAKTLDFSQKGLLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI 189
           L   E L  +               A+   G  + I             +  + V  Y  
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 190 GKVSFRPYEDVLGIGHSMGWSS 211
             +S R   +       + W+ 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWAR 144

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 8e-08
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 78  GHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWD 130
           G     + ++       +IK L  H+  V+ L +     L  +SG +  IK W+
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA---KTLDFSQKGLLAV 157
           H   ++AL  +P    + +   + +I  W             H+    +LD S+    + 
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSS 62

Query: 158 GTGSFVQILGDFSGSHNYSRYMGHSM 183
            +      +   +     S+    S 
Sbjct: 63  ISWDDTLKVNGITKHEFGSQPKVASA 88

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQTLPGHA 144
                  + +  +        A        L+AT   +  I I+ +++  ++++ L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 145 K---TLDFSQKGLLAVG 158
                L +     L   
Sbjct: 259 DGVNNLLWETPSTLVSS 275

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 97  KMLCHQGPVSA-LAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
           ++ C             +   + +  ++  IKIWD    E  + L GH
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH 54

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 6e-06
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 14/133 (10%)

Query: 7   RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVM 66
                +  L  H   +     R+  +  S +    +R  D+  G  +     G       
Sbjct: 166 STCEFVRTLNGHKRGIACLQYRDRLV-VSGSSDNTIRLWDIECGACL-RVLEGHEELVRC 223

Query: 67  RVNPFNGVVSLGHSGGTVTMW---------KPTTAAPLIKMLCHQGPVSALAFHPNGHLM 117
                  +VS G   G + +W          P     L  ++ H G V  L F      +
Sbjct: 224 IRFDNKRIVS-GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQI 280

Query: 118 ATSGKECKIKIWD 130
            +S  +  I IWD
Sbjct: 281 VSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 29  NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88
           +   + S +    ++  + +  E V        +  +  +   + +V  G S  T+ +W 
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWD 204

Query: 89  PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQT 139
               A L  +  H+  V       +   + +   + KIK+WDL              L+T
Sbjct: 205 IECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 140 LPGHAKT---LDFSQKGLLAVGTGSFVQI 165
           L  H+     L F +  +++      + I
Sbjct: 263 LVEHSGRVFRLQFDEFQIVSSSHDDTILI 291

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 3e-07
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 87  WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKT 146
                    +K + H G V  L + P+G  +A++  +  IKIW++   +V +T+P   + 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 147 ------LDFSQKGLLAVGTGSFVQI 165
                 + ++++ L+++    F+  
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 7e-06
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 57  RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL 116
           RT  G   V+   P  G      +G +V      +         H    +     P+G+ 
Sbjct: 14  RTARGTAVVLGNTP-AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 117 MATSGKECKIKIW 129
            A+      ++IW
Sbjct: 73  CASGDVHGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 5/63 (7%)

Query: 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKT---LDFSQKGLLAVG 158
           +G    L   P G  +        +    +      +    H+        S  G     
Sbjct: 17  RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY-CA 74

Query: 159 TGS 161
           +G 
Sbjct: 75  SGD 77

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 1/55 (1%)

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQG-PVSALAFHPNGHLMATSGKECKIKIWDL 131
             +  T+ +W   T      +          L        + +      I   + 
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFSQKG-LLAV 157
              PV+++ F P    + T+G +  I  W+L+  + ++      +   +  +    +L +
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCL 309

Query: 158 GTGS 161
            T  
Sbjct: 310 ATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 7/74 (9%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 95  LIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQTLPGHAK---TL 147
           ++++    +  +S +   P+  L+  +  +  + ++          L     +       
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 148 DFSQKGLLAVGTGS 161
           +F     L +  G+
Sbjct: 63  NFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 66  MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK 125
           +  +P +  +    S G ++ W   T   +          S +    + +++  +  +  
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDT 315

Query: 126 IKIWDLRKYEVLQTLPGHA 144
            K        + QT+  +A
Sbjct: 316 FKTNA----AIDQTIELNA 330

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 15/78 (19%), Positives = 35/78 (44%)

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK 145
                ++   +    H   V +L+F+ +G  + ++G + K++ WD++  E + TL  H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 146 TLDFSQKGLLAVGTGSFV 163
            ++  +  L     G  +
Sbjct: 333 DIEIEEDILAVDEHGDSL 350

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 14/97 (14%)

Query: 66  MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVS----ALAFHPNGHLMATSG 121
           +  N     +      G +  W   T   +  +  H   +      LA   +G  +A  G
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 122 KECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVG 158
                 ++D++  +        +       + L  V 
Sbjct: 355 ------VFDVKFLKK----GWRSGMGADLNESLCCVC 381

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 24/252 (9%), Positives = 59/252 (23%), Gaps = 53/252 (21%)

Query: 10  TELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR------ 62
              +  K H   +  +    +  +  S +  G L+  D  + +                 
Sbjct: 5   ATANAGKAHDADIFSVSACNSFTVSCSGD--GYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 63  -------TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNG- 114
                    + R      +V+     G +  ++ T      K++  +  +       +  
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 115 --------------HLMATSGKECKIKIWDL---------------------RKYEVLQT 139
                         H +  +  +    IW                          E   T
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 140 LPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199
               A ++D S++GL+A G  +   +      +                   +    +  
Sbjct: 183 PSQFATSVDISERGLIATG-FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 200 VLGIGHSMGWSS 211
              +      S+
Sbjct: 242 QGSLLAIAHDSN 253

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 16/186 (8%), Positives = 38/186 (20%), Gaps = 28/186 (15%)

Query: 46  DVTMGEIVGNFRTGL---------GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96
               G  +G+              G       +      + G     V ++ P T  P+ 
Sbjct: 52  CAGCGVTLGHSLGAFLSLAVAGHSGSD-FALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110

Query: 97  KMLCHQGPVSALAFHPNG--------HLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLD 148
            +     P  ++    +          L+             +      Q     +    
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS---- 166

Query: 149 FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208
                +      +          S   S         G    + +    ++         
Sbjct: 167 --CFHIHPGAAATHYLGSCP--ASLAASDLAAAPAAAGIVGAQCTGA--QNCSSQAAQAN 220

Query: 209 WSSILV 214
           +  +LV
Sbjct: 221 YPGMLV 226

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 63  TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH--LMATS 120
           TD + +       S   +    +    +        + +     A+    +G     A S
Sbjct: 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNGHDSDAIIAAQDGASDNYANS 333

Query: 121 GKECKIKIWDLRKYEVLQTLP 141
                + I+D    +   ++ 
Sbjct: 334 AGTEVLDIYDAASDQDQSSVE 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137
               G +  +   T     K+   +  ++ L    +   +     + KI  + L K E  
Sbjct: 294 APEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349

Query: 138 QTLPGHAKTL 147
           +T+    + L
Sbjct: 350 RTVETDKRPL 359

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 86  MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK 145
                    +                 +    AT G +  I++WD+   + +Q      +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 146 TLDFSQKGLLAVGTGSFVQILGDFSGSHN 174
            L   Q G++A G G  +      S S +
Sbjct: 295 QLGNQQVGVVATGNGRII------SLSLD 317

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 18/128 (14%)

Query: 83  TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT-SGKECKIKIWDL--RKYEVLQT 139
           ++++ +     P       +   + L++ P  + +A   GK   ++  D    K   +  
Sbjct: 2   SISLKEIIPPQPST----QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ 57

Query: 140 LPGHAK----TLDFSQKG---LLAVG----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQ 188
             GH      T+ FS       L  G             D   +           V    
Sbjct: 58  FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 117

Query: 189 IGKVSFRP 196
           I  +S+  
Sbjct: 118 ISDISWDF 125

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 78  GHSGGTVTMWKPTTAAPLIKMLCHQGPVS----ALAFHPNGHLMATSGKECKIKIWDL 131
             +  T+ +W  TT+  + K    +  +      +    NG +  +   +  +  ++L
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI-ISLSLDGTLNFYEL 325

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 1/59 (1%)

Query: 84  VTMWKPTTAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTLP 141
                 T    +   +      + +A  P+G  +         + + D     +  T+ 
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 78  GHSGGTVTMWK--PTTAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKY 134
                 + +W      A  L +++   G V  +   P+  +L      E ++  + +   
Sbjct: 10  SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69

Query: 135 EVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF 194
           +   T    +     S   +     G FV +    +G+ + +R      V    + +   
Sbjct: 70  DGALTFAAESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 195 RPY 197
             +
Sbjct: 129 GCH 131

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 11/124 (8%), Positives = 32/124 (25%), Gaps = 9/124 (7%)

Query: 82  GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR--KYEVLQT 139
           G + +   +T      +              +G  +   G++ K+ + DL   +   +  
Sbjct: 42  GQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 100

Query: 140 LP------GHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS 193
           +           +     +   A+    +        G     + +  +    Y   +  
Sbjct: 101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160

Query: 194 FRPY 197
             P 
Sbjct: 161 PEPR 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.42
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.26
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.25
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.21
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.38
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.27
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.16
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.53
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.27
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.19
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.08
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.03
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	97.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.98
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.88
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.81
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.75
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.65
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.64
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.39
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.23
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.75
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.67
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.63
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.62
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.2
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.04
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.8
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.85
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.44

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-34  Score=254.35  Aligned_cols=211  Identities=11%  Similarity=0.133  Sum_probs=183.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++|| .++...+.+.+|... ++++|+|+|++||+|+.||+|++||+.++..  ...+..|.++|.+++|+|++.+|++
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~  119 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA  119 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccc
Confidence            68999 788888899999886 9999999999999999999999999988764  3567889999999999999999999


Q ss_pred             EeC--CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcC
Q 041916           78 GHS--GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQ  151 (359)
Q Consensus        78 g~~--dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~  151 (359)
                      ++.  +..+.+|++.++++...+.+|.+.|++++|+|++.+ |++|+.|+.|++||++++++...+   ...|.++.|+|
T Consensus       120 ~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p  199 (311)
T d1nr0a1         120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP  199 (311)
T ss_dssp             EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc
Confidence            876  456999999999999999999999999999999885 788999999999999999888777   45789999999


Q ss_pred             Cc--eEEEEcCCcEEEEcCCCCCCcccee-------ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          152 KG--LLAVGTGSFVQILGDFSGSHNYSRY-------MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ++  +++++.|+.|.+||+.++. ....+       .+|.    ..|++++|+|++++|++|+.||.+++|....
T Consensus       200 ~~~~l~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~----~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         200 DGSLFASTGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHS----GSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCC-EEEECBCTTSSSCSSS----SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccc----ccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            99  7778889999999977652 22222       2343    4899999999999999999999888887543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-34  Score=251.33  Aligned_cols=199  Identities=19%  Similarity=0.227  Sum_probs=175.7

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC------
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG------   82 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg------   82 (359)
                      ...++|++|.+. ++++|+|++.+||||+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++++|+.|+      
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            567889999997 9999999999999999999999999999999999999999999999999999998887765      


Q ss_pred             --------------------------------------------------------------------------------
Q 041916           83 --------------------------------------------------------------------------------   82 (359)
Q Consensus        83 --------------------------------------------------------------------------------   82 (359)
                                                                                                      
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence                                                                                            


Q ss_pred             -eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--e
Q 041916           83 -TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--L  154 (359)
Q Consensus        83 -~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l  154 (359)
                       .|++||+++++++..+.+|.+.|++++|+|++.+|++|+.|+.|++||++....+..+     ...+.+++|+|++  +
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  285 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence             4555666666666677789999999999999999999999999999999998877665     3468999999999  7


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ++++.||.|++||+.++ ..+..+.+|..    +|++++|+|++.+|++|+.||.+.+|
T Consensus       286 ~~g~~dg~i~iwd~~~~-~~~~~~~~H~~----~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         286 LAGYDDFNCNVWDALKA-DRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEECCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            77888999999998766 67777888865    89999999999999999888877776

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=237.28  Aligned_cols=212  Identities=14%  Similarity=0.130  Sum_probs=182.1

Q ss_pred             CeEEEe-CCCc-----EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCC
Q 041916            1 YPYIYN-RDGT-----ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus         1 ~v~iwd-~~g~-----~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~   71 (359)
                      +|+||| .++.     ......+|.+. .+++|+|++++|++|+.||.|++||+..  +.....+..|...+.+++|+|+
T Consensus        73 ~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  152 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred             EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc
Confidence            488999 4332     23344577776 9999999999999999999999999874  4566778889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDF  149 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  149 (359)
                      +.++++++.|+.|.+|++.++++......|...|++++|++++..+++++.|+.|++||+++++.+..+  .+.|.+++|
T Consensus       153 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~  232 (337)
T d1gxra_         153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEE
Confidence            999999999999999999999988888899999999999999999999999999999999999988776  678999999


Q ss_pred             cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +|++  +++++.|+.+++||+..+.  ......|..    .|++++|+|++++|++|+.||.+.+|....+
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~----~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~  297 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cccccccceeccccccccccccccc--ccccccccc----ccceEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999  7778899999999976652  223444543    8999999999999999999998888765443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-31  Score=231.65  Aligned_cols=208  Identities=13%  Similarity=0.163  Sum_probs=177.2

Q ss_pred             EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----------
Q 041916            4 IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-----------   71 (359)
Q Consensus         4 iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----------   71 (359)
                      .|.....+.++|++|.+. ++++|+|++.+|+||+.||+|+|||+.+++++..+.+|...|.+++|+|+           
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            466556667889999987 99999999999999999999999999999988888888777777776665           


Q ss_pred             -------------------------------CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE
Q 041916           72 -------------------------------NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS  120 (359)
Q Consensus        72 -------------------------------~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~  120 (359)
                                                     +..+++++.|+.+.+||+.++..+..+.+|...+.+++|+|++.+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence                                           4456667788999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEEcCCceeeEec---cCCceeEEEcCC--------------------c--eEEEEcCCcEEEEcCCCCCCcc
Q 041916          121 GKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK--------------------G--LLAVGTGSFVQILGDFSGSHNY  175 (359)
Q Consensus       121 ~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~--------------------g--l~~~~~d~~i~i~d~~~~~~~~  175 (359)
                      +.|+.|++||+.++..+..+   ...+.+++|+|+                    +  +++++.|+.|++||+.++ ..+
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~  240 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCL  240 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEE
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEE
Confidence            99999999999998887776   345777777764                    2  567788999999997766 666


Q ss_pred             ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       176 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      ..+.+|..    .|.+++|+|++++|++|+.||.+.+|...
T Consensus       241 ~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         241 MTLVGHDN----WVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             EEEECCSS----CEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             EEEeCCCC----CEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            77777765    89999999999999999999887777644

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-31  Score=231.82  Aligned_cols=211  Identities=12%  Similarity=0.104  Sum_probs=177.4

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-   73 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-   73 (359)
                      +|+||| .++.  ....+..|... .+++|+|++.+|++++.  +..+++|++.+++....+.+|...|++++|+|++. 
T Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             eEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            489999 5554  34668888876 99999999999999876  45699999999999999999999999999999987 


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----------cCC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----------PGH  143 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~  143 (359)
                      .|++|+.||.|++||+++++....+..|..+|++++|+|++++|++++.|+.|++||++++..+..+          .+.
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence            4888999999999999999999999999999999999999999999999999999999998877766          246


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      |.+++|+|++  +++++.||.|+|||+.++ ..+..+..|..   .....+.+.++++.|++++.||.+++|.+
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~~~~~---~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTR---IEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSS---GGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCC---ccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            8999999999  788889999999998776 56666655532   12334455566777888888887777753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-31  Score=235.45  Aligned_cols=209  Identities=15%  Similarity=0.134  Sum_probs=171.9

Q ss_pred             CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV--GNFRTGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~   74 (359)
                      .|+||| .++.  .+..+++|.+. ++++|+|++++|++|+.|++|++||+.++...  ..+..|...|.+++|+|+++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~  109 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK  109 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccccc
Confidence            378999 5554  57888999987 99999999999999999999999999877643  445678889999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---------------
Q 041916           75 VSLGHSGGTVTMWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---------------  135 (359)
Q Consensus        75 l~sg~~dg~v~lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------  135 (359)
                      |++|+.|++|++|++.......    ....|.+.|.+++|+|++.+|++|+.|++|++||+....               
T Consensus       110 l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~  189 (371)
T d1k8kc_         110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  189 (371)
T ss_dssp             EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccccc
Confidence            9999999999999987765432    234788999999999999999999999999999986432               


Q ss_pred             ---eeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          136 ---VLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       136 ---~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                         .+...   .+.+.+++|+|+|  +++++.|+.|.+||+.++ ..+..+..|..    +|.+++|+|++.+|++|+ |
T Consensus       190 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~----~v~s~~fs~d~~~la~g~-d  263 (371)
T d1k8kc_         190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETL----PLLAVTFITESSLVAAGH-D  263 (371)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSC----CEEEEEEEETTEEEEEET-T
T ss_pred             ceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-cceeeeecccc----cceeeeecCCCCEEEEEc-C
Confidence               22222   3468999999999  778889999999997665 56666777755    899999999998888766 5


Q ss_pred             CeEEEEEc
Q 041916          208 GWSSILVP  215 (359)
Q Consensus       208 g~~~i~~~  215 (359)
                      +...+|..
T Consensus       264 ~~~~~~~~  271 (371)
T d1k8kc_         264 CFPVLFTY  271 (371)
T ss_dssp             SSCEEEEE
T ss_pred             CceEEEEe
Confidence            55555443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=1.5e-30  Score=226.28  Aligned_cols=204  Identities=14%  Similarity=0.126  Sum_probs=163.3

Q ss_pred             CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916            9 GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTVTM   86 (359)
Q Consensus         9 g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~l   86 (359)
                      |...+.+.+|.+. ++++|+|++.+|+||+.||+|++||+.+++++..+. .|...|++++|+|++.+ ++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            6778999999997 999999999999999999999999999999888875 68899999999999875 45667899999


Q ss_pred             EeCCCCcc-------------eEEE---------------------------eccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916           87 WKPTTAAP-------------LIKM---------------------------LCHQGPVSALAFHPNGHLMATSGKECKI  126 (359)
Q Consensus        87 wd~~~~~~-------------~~~~---------------------------~~h~~~v~~i~~~~~~~~l~~~~~d~~i  126 (359)
                      |++.....             +..+                           ......+.+++|+|++.+|++++.|+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98643210             0000                           0122356889999999999999999999


Q ss_pred             EEEEcCCceeeEe--c--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc--cceeecccCCCCcceEEEEEeeCC
Q 041916          127 KIWDLRKYEVLQT--L--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN--YSRYMGHSMVKGYQIGKVSFRPYE  198 (359)
Q Consensus       127 ~iwd~~~~~~~~~--~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~  198 (359)
                      .+||++++.....  .  ...|.+++|+|++  +++++.++.|++||+.++...  ...+..|.    .+|++++|+|++
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~  236 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT----AKVACVSWSPDN  236 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS----SCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence            9999988765432  2  5689999999999  777888999999997665322  22333444    489999999999


Q ss_pred             CEEEEEcCCCeEEEEEcCC
Q 041916          199 DVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       199 ~~l~~~~~dg~~~i~~~~~  217 (359)
                      .+|++|+.||.+.+|....
T Consensus       237 ~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             SEEEEEETTSCEEEEETTC
T ss_pred             cceEEEcCCCEEEEEECCC
Confidence            9999999999888876443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6e-30  Score=226.83  Aligned_cols=207  Identities=13%  Similarity=0.143  Sum_probs=179.8

Q ss_pred             CeEEEe-C--CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916            1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS   76 (359)
Q Consensus         1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~   76 (359)
                      +|++|| .  ++.....+..|... .+++|+|++.++++++.|+.|.+||+.++++......|...|.+++|+|++..++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            378999 3  44556778888876 9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916           77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-  153 (359)
Q Consensus        77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-  153 (359)
                      +|+.||.|++||+++++.+..+ .|.+.|.+++|+|++.+|++++.|+.|++||++++......  .+.|.+++|+|+| 
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCC
Confidence            9999999999999999877765 58899999999999999999999999999999998776555  5689999999999 


Q ss_pred             -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                       +++++.||.|++||+.++ ..+..+ .|..    .|.+++|+|++++|++|+.||.+.+|.
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~-~~~~~~-~~~~----~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYG-ASIFQS-KESS----SVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEEETTSEEEEEETTTC-CEEEEE-ECSS----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCC-CEEEEc-cCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence             778889999999998776 333333 3433    899999999999999988888776664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.1e-29  Score=217.70  Aligned_cols=207  Identities=14%  Similarity=0.216  Sum_probs=185.5

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      +.+|+ ........+..|... .++.|+|++..+++++.|+.+++||+.++..+..+..|...+.+++|+|++.+|++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe
Confidence            34566 556666777788877 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN--------------------GHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      .||.|++|++.++.....+..|...+.+++|+|+                    +.++++++.|+.|++||+++++++..
T Consensus       163 ~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  242 (317)
T d1vyhc1         163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT  242 (317)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence            9999999999999999999999999999999875                    35789999999999999999999888


Q ss_pred             c---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          140 L---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       140 ~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      +   ...|.+++|+|++  +++++.||.|++||+.++ ..+..+.+|..    +|++++|+|++++|++|+.||.+.+|
T Consensus       243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence            7   4578999999999  777889999999998776 67788888865    89999999999999999988877776

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=226.92  Aligned_cols=213  Identities=16%  Similarity=0.213  Sum_probs=174.7

Q ss_pred             CeEEEe-CCCcEEEEecc------------------CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC
Q 041916            1 YPYIYN-RDGTELHCLKE------------------HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL   60 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~------------------h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~   60 (359)
                      +|+||| .+|..+..+..                  |.. +++++|+|++++|++|+.||.|++||...++.+..+.+|.
T Consensus        84 ~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~  163 (388)
T d1erja_          84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE  163 (388)
T ss_dssp             CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccc
Confidence            489999 88888877654                  333 4899999999999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH-PNGHLMATSGKECKIKIWDLRKYEVLQT  139 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~  139 (359)
                      ..|.+++|++++..+++|+.+|.|++||+.+.........+... .++.++ +++.+|++++.|+.|++||+.++..+..
T Consensus       164 ~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~  242 (388)
T d1erja_         164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER  242 (388)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccccceeeeeeecccccccccccccccc-ccccccCCCCCeEEEEcCCCeEEEeecccCcccee
Confidence            99999999999999999999999999999988777766655554 455555 4899999999999999999999877665


Q ss_pred             c----------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc-----------cceeecccCCCCcceEEEEEee
Q 041916          140 L----------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN-----------YSRYMGHSMVKGYQIGKVSFRP  196 (359)
Q Consensus       140 ~----------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~p  196 (359)
                      +          .+.|.+++|+|++  +++++.|+.|++||+.+....           ......|    ...|.+++|+|
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~  318 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH----KDFVLSVATTQ  318 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC----SSCEEEEEECG
T ss_pred             eccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc----cceEEEEEECC
Confidence            5          2468999999999  778889999999997654221           1122333    34899999999


Q ss_pred             CCCEEEEEcCCCeEEEEEcCCC
Q 041916          197 YEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       197 ~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      ++.+|++|+.||.+.+|....+
T Consensus       319 ~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         319 NDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             GGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999998888765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.3e-30  Score=229.40  Aligned_cols=193  Identities=9%  Similarity=0.033  Sum_probs=160.3

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eE
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--LI   96 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~--~~   96 (359)
                      ++|++|+|++.+||+|+.||.|+|||+.+++  .+..+.+|.++|.+++|+|++++|++|+.|++|++||+.++..  ..
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            4999999999999999999999999998775  5677889999999999999999999999999999999987654  44


Q ss_pred             EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE---e-c---cCCceeEEEcCCc--eEEEEcCCcEEEEc
Q 041916           97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ---T-L---PGHAKTLDFSQKG--LLAVGTGSFVQILG  167 (359)
Q Consensus        97 ~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~-~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d  167 (359)
                      .+..|...|++++|+|++++|++++.|++|++|++.......   . .   .+.|.+++|+|++  +++++.|+.|++|+
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~  169 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS  169 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEe
Confidence            456788999999999999999999999999999987643221   1 1   4578999999999  77788999999999


Q ss_pred             CCCCCC-----------------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          168 DFSGSH-----------------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       168 ~~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      ......                 .......    +...|.+++|+|++++|++++.||.+.+|....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         170 AYIKEVEERPAPTPWGSKMPFGELMFESSS----SCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCEEEECCC----CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             eccCccccccccccccccccceeeeeeccC----ccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            654311                 1111222    344799999999999999999998888877544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7e-29  Score=218.96  Aligned_cols=211  Identities=10%  Similarity=0.081  Sum_probs=168.1

Q ss_pred             eEEEe-C--CCcEEEEeccCC-Ce-EEEEEec--CCCEEEEEecCCeEEEEECCCCe--------EEEEEecCCCCeEEE
Q 041916            2 PYIYN-R--DGTELHCLKEHG-AV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGE--------IVGNFRTGLGRTDVM   66 (359)
Q Consensus         2 v~iwd-~--~g~~~~~l~~h~-~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~   66 (359)
                      |+.|+ .  ....+..+.+|. .. ++++|+|  ++.+|++|+.||+|+|||+..+.        ....+..|.++|.++
T Consensus        42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v  121 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI  121 (325)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE
T ss_pred             EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEE
Confidence            44565 2  234467777774 44 9999998  56899999999999999987543        223456788999999


Q ss_pred             EEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec---
Q 041916           67 RVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL---  140 (359)
Q Consensus        67 ~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~---  140 (359)
                      +|+|++.+|++++.  ++.+.+|+..+++++..+.+|...|++++|+|++.+ +++++.|+.|++||+..++....+   
T Consensus       122 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             EECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             EECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence            99999999887764  678999999999999999999999999999998875 678999999999999987765554   


Q ss_pred             ---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe---eCCCEEEEEcCCCeEE
Q 041916          141 ---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR---PYEDVLGIGHSMGWSS  211 (359)
Q Consensus       141 ---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~~~~~dg~~~  211 (359)
                         ...|.+++|+|++   +++++.|+.|++||+.++ ..+..+..|..    ++.++.|+   |++.+|++++.||.++
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~----~v~~~~~s~~~~dg~~l~s~s~D~~i~  276 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQE----PVQGGIFALSWLDSQKFATVGADATIR  276 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTB----CCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccc-ccccccccccc----ccccceeeeeccCCCEEEEEeCCCeEE
Confidence               3458999999975   667889999999998776 56667777755    45444444   6789999999999888


Q ss_pred             EEEcCC
Q 041916          212 ILVPGS  217 (359)
Q Consensus       212 i~~~~~  217 (359)
                      +|....
T Consensus       277 iwd~~~  282 (325)
T d1pgua1         277 VWDVTT  282 (325)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            886543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.1e-28  Score=217.01  Aligned_cols=208  Identities=17%  Similarity=0.210  Sum_probs=169.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +|++|| ..+..+..+.+|... .+++|++++..+++++.++.|++||..+.........+...+....+.+++.+|++|
T Consensus       144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  223 (388)
T d1erja_         144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG  223 (388)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEE
Confidence            488999 888999999999887 999999999999999999999999999988887777665555444445578999999


Q ss_pred             eCCCeEEEEeCCCCcceEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe------------
Q 041916           79 HSGGTVTMWKPTTAAPLIKM-------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT------------  139 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------  139 (359)
                      +.||.|.+||+.++..+..+       .+|.+.|++++|+|++.+|++++.|+.|++||++++.....            
T Consensus       224 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence            99999999999988766554       36889999999999999999999999999999987543221            


Q ss_pred             c---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE------eeCCCEEEEEcCCC
Q 041916          140 L---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF------RPYEDVLGIGHSMG  208 (359)
Q Consensus       140 ~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~l~~~~~dg  208 (359)
                      .   ...|.+++|+|+|  +++++.||.|++||+.++ .++..+.+|..    .|.++++      +|++.+|++|+.||
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-~~~~~l~~H~~----~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEeCCCC----CEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            1   3568999999999  777889999999998776 67778888866    8998875      56777777777666


Q ss_pred             eEEEE
Q 041916          209 WSSIL  213 (359)
Q Consensus       209 ~~~i~  213 (359)
                      .+++|
T Consensus       379 ~I~iW  383 (388)
T d1erja_         379 KARIW  383 (388)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55555

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-28  Score=211.03  Aligned_cols=212  Identities=15%  Similarity=0.181  Sum_probs=160.0

Q ss_pred             Ee-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----------
Q 041916            5 YN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-----------   71 (359)
Q Consensus         5 wd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----------   71 (359)
                      |+ .+.+....|++|.+. .+ +++++|++||||+.||+|+|||+.+++++..+.+|.+.|.+++|+|+           
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~   79 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL   79 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccc
Confidence            55 556677889999874 44 35667899999999999999999999999999999888888887653           


Q ss_pred             --------------------------------------------------------------------------------
Q 041916           72 --------------------------------------------------------------------------------   71 (359)
Q Consensus        72 --------------------------------------------------------------------------------   71 (359)
                                                                                                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence                                                                                            


Q ss_pred             ---------------------------CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 041916           72 ---------------------------NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC  124 (359)
Q Consensus        72 ---------------------------~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~  124 (359)
                                                 +.++++|+.||.|++||+..++++..+.+|...+.+++++  +++|++++.|+
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~  237 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  237 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             EEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence                                       2234445555666666666666666777777788877765  46999999999


Q ss_pred             eEEEEEcCCceeeEecc------CCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecc-cCCCCcceEEEEEeeC
Q 041916          125 KIKIWDLRKYEVLQTLP------GHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGH-SMVKGYQIGKVSFRPY  197 (359)
Q Consensus       125 ~i~iwd~~~~~~~~~~~------~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~  197 (359)
                      .|++||+...+....+.      ..+.++.++++.+++++.||.|++||+.++ +.+..+... ...+...|++++|+|+
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg-~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTC-CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCC-CEEEEEecccCCCCCCCEEEEEECCC
Confidence            99999999887766662      245677777766889999999999998877 444444321 1113448999999999


Q ss_pred             CCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916          198 EDVLGIGHSMGWSSILVPGSGEPNFDSWVAN  228 (359)
Q Consensus       198 ~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~  228 (359)
                      +.+|++|+.||        +.+..+.+|+++
T Consensus       317 ~~~la~g~~dG--------t~~~~l~~~Df~  339 (342)
T d2ovrb2         317 KLVCAVGSRNG--------TEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEEECSSS--------SSCCEEEEEECC
T ss_pred             CCEEEEEeCCC--------CCeeEEEEEeCC
Confidence            99999998886        344556667654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=8e-27  Score=205.08  Aligned_cols=167  Identities=14%  Similarity=0.202  Sum_probs=141.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeE------------------------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQL------------------------------------   42 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i------------------------------------   42 (359)
                      +|+||| .++..+..+..|... .+++|+|++.+|++|+.|+.+                                    
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (340)
T d1tbga_          78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI  157 (340)
T ss_dssp             EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEE
T ss_pred             ceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccc
Confidence            377888 778888888887776 888888888877777666444                                    


Q ss_pred             ---------------------------------------------------EEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 041916           43 ---------------------------------------------------RYQDVTMGEIVGNFRTGLGRTDVMRVNPF   71 (359)
Q Consensus        43 ---------------------------------------------------~iwd~~~~~~~~~~~~~~~~v~~~~~sp~   71 (359)
                                                                         ++||+.+++++..+.+|.++|++++|+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~  237 (340)
T d1tbga_         158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN  237 (340)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC
Confidence                                                               55555555556667789999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCcee
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKT  146 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~  146 (359)
                      +.+|++|+.||.|++||+.....+..+.  .+...|++++|+|++++|++|+.||.|++||+.+++++..+.   ++|++
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~  317 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            9999999999999999999888776654  566789999999999999999999999999999999998883   57999


Q ss_pred             EEEcCCc--eEEEEcCCcEEEEc
Q 041916          147 LDFSQKG--LLAVGTGSFVQILG  167 (359)
Q Consensus       147 ~~~s~~g--l~~~~~d~~i~i~d  167 (359)
                      ++|+|++  +++++.||.|+|||
T Consensus       318 l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         318 LGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999  77889999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-26  Score=202.63  Aligned_cols=206  Identities=16%  Similarity=0.170  Sum_probs=163.3

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-----------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-----------------------   55 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------   55 (359)
                      +|+||| .+++++.++.+|.+. ++++|+|+ .+|++|+.|++|++|++........                       
T Consensus        34 ~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (355)
T d1nexb2          34 MIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  112 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceee
Confidence            489999 899999999999987 99999986 4788999999888888764322111                       


Q ss_pred             --------------------------------------------------------------------------------
Q 041916           56 --------------------------------------------------------------------------------   55 (359)
Q Consensus        56 --------------------------------------------------------------------------------   55 (359)
                                                                                                      
T Consensus       113 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~  192 (355)
T d1nexb2         113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK  192 (355)
T ss_dssp             EEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             eecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc
Confidence                                                                                            


Q ss_pred             ----EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916           56 ----FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL  131 (359)
Q Consensus        56 ----~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~  131 (359)
                          +.++...+.++.|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|++  ++|++++.||.|++||+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~  270 (355)
T d1nexb2         193 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDA  270 (355)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEET
T ss_pred             ceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccc
Confidence                112334456777888999999999999999999999999999999999999999864  69999999999999999


Q ss_pred             CCceeeEec-cCCceeE-EEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          132 RKYEVLQTL-PGHAKTL-DFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       132 ~~~~~~~~~-~~~i~~~-~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      +++...... ...+.++ .+++++ +++++.|+.|++||+.++......+.+|..    +|++++|+|+ .++++++.||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~----~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD----QIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             TTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCS----EEEEEEEETT-EEEEEEESSS
T ss_pred             cccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCC----CEEEEEEcCC-eEEEEEECCC
Confidence            988765555 4445444 567777 888888999999998887433344555644    8999999986 4677788888


Q ss_pred             eEEEEE
Q 041916          209 WSSILV  214 (359)
Q Consensus       209 ~~~i~~  214 (359)
                      .+.+|+
T Consensus       346 ~~~l~~  351 (355)
T d1nexb2         346 QSFLEI  351 (355)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            766654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.5e-26  Score=199.28  Aligned_cols=209  Identities=11%  Similarity=0.090  Sum_probs=156.9

Q ss_pred             CeEEEe-CCCcEEEEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--------------EE----------
Q 041916            1 YPYIYN-RDGTELHCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--------------IV----------   53 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------~~----------   53 (359)
                      +|++|| .+|.++..+. .|... ++++|+|++.++ +++.|+.+++|+.....              ..          
T Consensus        35 ~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  113 (299)
T d1nr0a2          35 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI  113 (299)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC
T ss_pred             eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCcccccccccccccccccccccccccccc
Confidence            589999 8899988885 57776 999999999755 55678999999974311              00          


Q ss_pred             ---------EEEe-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCCCCE
Q 041916           54 ---------GNFR-------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPNGHL  116 (359)
Q Consensus        54 ---------~~~~-------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~  116 (359)
                               ..+.       .....+.+++|+|++.+|++|+.||.|.+||+.++.... ....|...|++++|+|++.+
T Consensus       114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (299)
T d1nr0a2         114 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  193 (299)
T ss_dssp             EEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                     0000       123457789999999999999999999999998776543 34578999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc-eeecccCCCCc
Q 041916          117 MATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS-RYMGHSMVKGY  187 (359)
Q Consensus       117 l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~  187 (359)
                      |++++.|+.|++||+.++..+...      ...|.+++|+|++  +++++.||.|++||+.+...... ....|   +..
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~---~~~  270 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH---AMS  270 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS---TTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC---CCC
Confidence            999999999999999887654333      3578999999999  77788999999999876533222 22222   334


Q ss_pred             ceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          188 QIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       188 ~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .+.++.| +++.+|++|+.||.+++|.
T Consensus       271 ~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         271 SVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             CEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             cEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            5666655 5577887777776555553

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=203.11  Aligned_cols=211  Identities=11%  Similarity=0.065  Sum_probs=160.7

Q ss_pred             CeEEEe-CCCcE--------EEEeccCCCe-EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 041916            1 YPYIYN-RDGTE--------LHCLKEHGAV-LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRV   68 (359)
Q Consensus         1 ~v~iwd-~~g~~--------~~~l~~h~~~-~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~   68 (359)
                      +|+||| ..+..        ...+..|.+. .+++|+|++.+|++++.  ++.+.+|+..+++++..+.+|...|.+++|
T Consensus        88 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  167 (325)
T d1pgua1          88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL  167 (325)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred             CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccc
Confidence            478998 43321        2334567776 99999999999887764  678999999999999999999999999999


Q ss_pred             cCCCCE-EEEEeCCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEecc--
Q 041916           69 NPFNGV-VSLGHSGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTLP--  141 (359)
Q Consensus        69 sp~~~~-l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~--  141 (359)
                      +|++.+ +++++.||.|++||+...+....+.   .|...|++++|+|+ +.+|++++.|+.|++||+++++++..+.  
T Consensus       168 ~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             cccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc
Confidence            999864 7789999999999998776655543   56788999999996 6889999999999999999999988883  


Q ss_pred             -CCceeEEEc---CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEEcCCCeEEEEE
Q 041916          142 -GHAKTLDFS---QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSSILV  214 (359)
Q Consensus       142 -~~i~~~~~s---~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~~~i~~  214 (359)
                       .++.++.|+   |+|  +++++.|+.|+|||+.++ +.+..+..|..  ...+..+++.+. +.+|++|+.||.+++|.
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQ--QLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEEECCTT--CGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEEEecCC--cccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence             334444443   455  888899999999998776 56666655532  223444444433 34677777777666653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.5e-25  Score=194.39  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=168.3

Q ss_pred             EEEeccCCC-e-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916           12 LHCLKEHGA-V-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP   89 (359)
Q Consensus        12 ~~~l~~h~~-~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~   89 (359)
                      ..+|++|.. + +|++|  ++++||||+.||+|+|||+.+++++..+.+|.++|.+++|+|+ .+|++|+.||+|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            567999976 4 66655  5789999999999999999999999999999999999999986 58999999999999999


Q ss_pred             CCCcceEEEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----------------------C-C
Q 041916           90 TTAAPLIKMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----------------------G-H  143 (359)
Q Consensus        90 ~~~~~~~~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------~-~  143 (359)
                      ...........+..  .+....+++++.++++++.|+.|++||+++...+....                       . .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  161 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence            98877666553333  34566778899999999999999999998765432220                       0 1


Q ss_pred             ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE---------
Q 041916          144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI---------  212 (359)
Q Consensus       144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i---------  212 (359)
                      .....+.+++  +++++.|+.|++||+.++ ........+..    .+.++.|+|++.++++++.||.+.+         
T Consensus       162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTD----RIYSTIYDHERKRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccccccceeeeecccceeeeeecccc-cceeeeecccc----ccccccccccceeeecccccceEEeeeccccccc
Confidence            1223344555  677788999999997665 44455555543    7899999999999999999997655         


Q ss_pred             -------------------EEcCCCCCccccccCCCccChhhhchhhh
Q 041916          213 -------------------LVPGSGEPNFDSWVANPFETSKQRREKEV  241 (359)
Q Consensus       213 -------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~v  241 (359)
                                         +++++.|+.+++|+++........+...+
T Consensus       237 ~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  284 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL  284 (355)
T ss_dssp             EEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTC
T ss_pred             cccccccccccccccccceeeeeecccccccccccccceecccccCCc
Confidence                               46678899999999876544333333333

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-24  Score=184.29  Aligned_cols=191  Identities=18%  Similarity=0.240  Sum_probs=145.0

Q ss_pred             EEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           12 LHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        12 ~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      +++...|.. ++|+  ++|+++||||+.||+|+|||+.+++++..+.+|.++|.+++|  ++++|++|+.||.|.+|++.
T Consensus         8 i~~~~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            444555554 3765  458999999999999999999999999999999999999987  56899999999999999986


Q ss_pred             CCcceEE-------------------------------------------EeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916           91 TAAPLIK-------------------------------------------MLCHQGPVSALAFHPNGHLMATSGKECKIK  127 (359)
Q Consensus        91 ~~~~~~~-------------------------------------------~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~  127 (359)
                      .+.....                                           +..|...|.++.+.  ...+++++.|+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~  161 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK  161 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             cccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCcee
Confidence            6532221                                           12334455555543  45788899999999


Q ss_pred             EEEcCCceeeEeccC---CceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          128 IWDLRKYEVLQTLPG---HAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       128 iwd~~~~~~~~~~~~---~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +||+++++++..+.+   .+..+.+++..+++++.|+.|++||+.+. ..+..+..+..    .+.  .+++++.+|++|
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~----~v~--~~~~~~~~l~sg  234 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVR--CIRFDNKRIVSG  234 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEE--EEECCSSEEEEE
T ss_pred             eecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccc-eeeeeecccce----eee--eccccceEEEEE
Confidence            999999988888743   45666666655888999999999997765 45555555533    454  467778899999


Q ss_pred             cCCCeEEEEEc
Q 041916          205 HSMGWSSILVP  215 (359)
Q Consensus       205 ~~dg~~~i~~~  215 (359)
                      +.||.+.+|..
T Consensus       235 ~~dg~i~iwd~  245 (293)
T d1p22a2         235 AYDGKIKVWDL  245 (293)
T ss_dssp             ETTSCEEEEEH
T ss_pred             cCCCEEEEEEC
Confidence            88888877753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.3e-25  Score=189.75  Aligned_cols=139  Identities=12%  Similarity=0.111  Sum_probs=100.6

Q ss_pred             CCCEEEEEeCCC-eEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCc
Q 041916           71 FNGVVSLGHSGG-TVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHA  144 (359)
Q Consensus        71 ~~~~l~sg~~dg-~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i  144 (359)
                      ++..+++++.|+ .|++|++........+. .|.+.+++++|+|++.+|++|+.||.|++||+.++......    .+.|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            333343333332 34555544333222222 36678999999999999999999999999999998876543    4578


Q ss_pred             eeEEEcCCc------------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916          145 KTLDFSQKG------------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI  212 (359)
Q Consensus       145 ~~~~~s~~g------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i  212 (359)
                      .+++|+|.+            +++++.|+.|++||+.........+.+|..    .|++++|+|++ .|++++.||.+++
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~----~V~~v~~~~~~-~l~s~g~D~~v~i  283 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD----GVNNLLWETPS-TLVSSGADACIKR  283 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT----CEEEEEEEETT-EEEEEETTSCEEE
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC----CeEEEEECCCC-EEEEEECCCeEEE
Confidence            999998743            667889999999998776566666667765    89999999986 4677777776666


Q ss_pred             EE
Q 041916          213 LV  214 (359)
Q Consensus       213 ~~  214 (359)
                      |.
T Consensus       284 W~  285 (287)
T d1pgua2         284 WN  285 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-23  Score=177.08  Aligned_cols=201  Identities=15%  Similarity=0.225  Sum_probs=153.8

Q ss_pred             CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-----------------------
Q 041916            1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-----------------------   55 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------   55 (359)
                      +|+||| .+++++.++.+|.+. ++++|  ++++|++|+.|+.|++|++..+.....                       
T Consensus        36 ~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (293)
T d1p22a2          36 TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK  113 (293)
T ss_dssp             CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred             eEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeeccc
Confidence            589999 899999999999987 88876  678999999999999999976643332                       


Q ss_pred             --------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC
Q 041916           56 --------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH  115 (359)
Q Consensus        56 --------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~  115 (359)
                                          +..|...+.++.+.  ...+++++.|+.|++||+++++++..+.++...+..+.++  +.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~  189 (293)
T d1p22a2         114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DR  189 (293)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred             ccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CC
Confidence                                12344445555544  3577889999999999999999999999999999888775  56


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeccCCc-eeEEEcCCc--eEEEEcCCcEEEEcCCCC--------CCccceeecccCC
Q 041916          116 LMATSGKECKIKIWDLRKYEVLQTLPGHA-KTLDFSQKG--LLAVGTGSFVQILGDFSG--------SHNYSRYMGHSMV  184 (359)
Q Consensus       116 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~i-~~~~~s~~g--l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~  184 (359)
                      ++++++.|++|++||+++...+..+.+.. ....+++++  +++++.||.|++||+...        ......+.+|.. 
T Consensus       190 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-  268 (293)
T d1p22a2         190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-  268 (293)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-
T ss_pred             eEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCC-
Confidence            89999999999999999998888774321 222344455  888899999999996432        123345566655 


Q ss_pred             CCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          185 KGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       185 ~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                         .|++++|+  +.+|++|+.||.+.+|
T Consensus       269 ---~V~~v~~d--~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         269 ---RVFRLQFD--EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             ---CCCCEEEC--SSCEEECCSSSEEEEE
T ss_pred             ---CEEEEEEc--CCEEEEEecCCEEEEe
Confidence               89999885  5677777777666655

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.6e-23  Score=185.42  Aligned_cols=164  Identities=12%  Similarity=0.092  Sum_probs=137.0

Q ss_pred             eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |++|| ..|..+ .+ .|... .+++|+|||++|++++.+.  .|++||+.++.. ..+..|...|.+++|+|++++|++
T Consensus        26 v~v~d~~~~~~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          26 AFIQDVSGTYVL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             EEEECTTSSBEE-EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCcEE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccce
Confidence            78999 555554 45 46554 9999999999998876653  799999987765 467789999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCceeeEec--cCCce
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG----------KECKIKIWDLRKYEVLQTL--PGHAK  145 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~--~~~i~  145 (359)
                      ++.++.+.+|++.++.....+..|...+.+++|+|+|++|+.++          .++.+++||+.+++.....  ...+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~  182 (360)
T d1k32a3         103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY  182 (360)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE
T ss_pred             eccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccc
Confidence            99999999999999998888889999999999999999998654          3457999999998776555  45678


Q ss_pred             eEEEcCCc--eEEEEcCCcEEEEcC
Q 041916          146 TLDFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus       146 ~~~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      .++|+|+|  +++++.++.+.+|+.
T Consensus       183 ~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         183 APAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEEECTTSCEEEEEESCCCCCEECS
T ss_pred             cccccCCCCEEEEEeCCCceEcccc
Confidence            89999999  777788888888874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.4e-25  Score=198.86  Aligned_cols=181  Identities=15%  Similarity=0.181  Sum_probs=141.3

Q ss_pred             EEEEEecC-----CCEEEEEecCCeEEEEECCCCe---------------EEEE---EecCCCCeEEEEEcCCCCEEEEE
Q 041916           22 LKLQFLRN-----HFLLASINKFGQLRYQDVTMGE---------------IVGN---FRTGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus        22 ~~l~~s~~-----~~~l~s~~~dg~i~iwd~~~~~---------------~~~~---~~~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      ..++|.++     +.++++++.||+|++||+....               ....   ...+...+.+++|+|++ +|++|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasg  201 (393)
T d1sq9a_         123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG  201 (393)
T ss_dssp             EEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE
T ss_pred             EEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEE
Confidence            56777765     4688999999999999974221               1111   12345668999999997 88999


Q ss_pred             eCCCeEEEEeCCCCcceEEE------eccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEecc--------
Q 041916           79 HSGGTVTMWKPTTAAPLIKM------LCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTLP--------  141 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~------~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~--------  141 (359)
                      +.||+|++||+.+++++..+      .+|..+|++++|+|+|++|++|+.|+   .|++||+.++.++..+.        
T Consensus       202 s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~  281 (393)
T d1sq9a_         202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  281 (393)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccc
Confidence            99999999999998876554      46899999999999999999999887   49999999988776652        


Q ss_pred             --------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          142 --------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       142 --------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                              +.|++++|+|++  +++++.|++|++||+.++ ..+..+.+|...-......++|+|++..++++
T Consensus       282 ~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence                    358999999999  888899999999998777 78888888865111122357788888766543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.6e-24  Score=185.04  Aligned_cols=162  Identities=10%  Similarity=-0.023  Sum_probs=125.9

Q ss_pred             cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeE
Q 041916           10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTV   84 (359)
Q Consensus        10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v   84 (359)
                      +.+...++|.+. ++|+|+|++.+||+|+.||+|+|||+.++..   +....+|..+|.+++|+|++ .+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            346667889886 9999999999999999999999999976543   23334699999999999865 589999999999


Q ss_pred             EEEeCCCCcceEEEeccCCC-eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee----Eecc-----CCceeEEEcCCc-
Q 041916           85 TMWKPTTAAPLIKMLCHQGP-VSALAFHPNGHLMATSGKECKIKIWDLRKYEVL----QTLP-----GHAKTLDFSQKG-  153 (359)
Q Consensus        85 ~lwd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~-----~~i~~~~~s~~g-  153 (359)
                      .+|++...........+... .....+.+++..+++++.|+++++||++.+...    ....     .....+.+.+.+ 
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999988777666544443 445566778899999999999999999764322    2221     123455566655 


Q ss_pred             -eEEEEcCCcEEEEcCCCC
Q 041916          154 -LLAVGTGSFVQILGDFSG  171 (359)
Q Consensus       154 -l~~~~~d~~i~i~d~~~~  171 (359)
                       +++++.|+.|++||+...
T Consensus       162 ~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             EEEEEESTTEEEEEESSCC
T ss_pred             ceeeecCCCcEEEEecccC
Confidence             888889999999997654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.4e-23  Score=189.56  Aligned_cols=131  Identities=18%  Similarity=0.360  Sum_probs=117.1

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe------cCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR------TGLGRTDVMRVNPFNGVVSLGHSGG---TVTMWKPTTA   92 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~sg~~dg---~v~lwd~~~~   92 (359)
                      ++++|+|++ +||+|+.||+|++||+.+++++..+.      +|..+|++++|+|+|.+|++|+.|+   .|++||+.++
T Consensus       188 ~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            899999997 88999999999999999998876554      6889999999999999999999887   4999999998


Q ss_pred             cceEEEe-------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC---c----eeEEEcCC
Q 041916           93 APLIKML-------------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH---A----KTLDFSQK  152 (359)
Q Consensus        93 ~~~~~~~-------------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---i----~~~~~s~~  152 (359)
                      ..+..+.             +|.+.|++++|+|++++|++|+.|++|++||+.+++++.++.++   |    ..++|+|+
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCC
Confidence            8777663             79999999999999999999999999999999999999998543   3    35788888


Q ss_pred             c
Q 041916          153 G  153 (359)
Q Consensus       153 g  153 (359)
                      +
T Consensus       347 ~  347 (393)
T d1sq9a_         347 G  347 (393)
T ss_dssp             S
T ss_pred             C
Confidence            8

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.7e-22  Score=184.39  Aligned_cols=222  Identities=9%  Similarity=-0.003  Sum_probs=155.0

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE--EEe---cCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG--NFR---TGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~---~~~~~v~~~~~sp~~~~   74 (359)
                      .|+||| .+++++.++..|..+..++|||||++|++++.|++|++||+.+++...  .+.   +|.+.+.+++|+|||++
T Consensus        43 ~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~  122 (426)
T d1hzua2          43 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY  122 (426)
T ss_dssp             EEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence            489999 999999999999888999999999999999999999999999887443  333   34455667788899997


Q ss_pred             EEE-EeCCCeEEEEeCCCCcceEEEe------------------------------------------------------
Q 041916           75 VSL-GHSGGTVTMWKPTTAAPLIKML------------------------------------------------------   99 (359)
Q Consensus        75 l~s-g~~dg~v~lwd~~~~~~~~~~~------------------------------------------------------   99 (359)
                      +++ +..++.+.+||..++.++..+.                                                      
T Consensus       123 l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  202 (426)
T d1hzua2         123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS  202 (426)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEE
T ss_pred             EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEE
Confidence            654 5588999999987765433221                                                      


Q ss_pred             -ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceee----------------------------------------
Q 041916          100 -CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVL----------------------------------------  137 (359)
Q Consensus       100 -~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~----------------------------------------  137 (359)
                       .+...+..++|+|+++++++++ .+..+.+||..+++.+                                        
T Consensus       203 ~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         203 IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence             1122345788999999877765 3456667766543321                                        


Q ss_pred             --------------Eecc---CCceeEEEcCCc-eEEE--------EcCCcEEEEcCCCCCCcccee-----ecccCCCC
Q 041916          138 --------------QTLP---GHAKTLDFSQKG-LLAV--------GTGSFVQILGDFSGSHNYSRY-----MGHSMVKG  186 (359)
Q Consensus       138 --------------~~~~---~~i~~~~~s~~g-l~~~--------~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~  186 (359)
                                    ..+.   ..+..++|+|+| .+++        +.+++|+|||+.++.......     ..+.. +.
T Consensus       283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~-~~  361 (426)
T d1hzua2         283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE-GA  361 (426)
T ss_dssp             CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS-SC
T ss_pred             ccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCC-CC
Confidence                          1111   236788999999 4443        236899999987774332221     11211 33


Q ss_pred             cceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCc
Q 041916          187 YQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPF  230 (359)
Q Consensus       187 ~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~  230 (359)
                      ..|.+++|+|||+++++       ++|..++.++.|.+|+....
T Consensus       362 ~rv~~~~fSpDGk~i~v-------s~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         362 KRVVQPEYNKRGDEVWF-------SVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             CCEEEEEECSSSSEEEE-------EECCCTTSCCEEEEEETTTT
T ss_pred             ccEEEEEECCCCCEEEE-------EEecCCCCCCeEEEEECCCC
Confidence            47999999999997754       22333456777888876543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.89  E-value=8.9e-22  Score=174.09  Aligned_cols=183  Identities=14%  Similarity=0.015  Sum_probs=146.8

Q ss_pred             EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEEE
Q 041916           22 LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWKPTTAAPLIKM   98 (359)
Q Consensus        22 ~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd~~~~~~~~~~   98 (359)
                      ..-.||| ||+++|+++ .|.|++||+.++..+. + .|...|.+++|+|||+.|++++.+.  .|.+||+.++. +..+
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEEC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEe
Confidence            4568999 999999887 5799999998887654 3 6889999999999999888766543  79999998775 4567


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEE-EE----------cCCcE
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLA-VG----------TGSFV  163 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~-~~----------~d~~i  163 (359)
                      ..|.+.|.+++|+|+|++|++++.++.+.+|++.++.+...+   ...+.+++|+|+| +++ ++          .++.+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            789999999999999999999999999999999998876666   4567899999999 443 32          23468


Q ss_pred             EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      ++||+.++ .. ..+..+..    .+..++|+|+|++|++++.++...+|.
T Consensus       162 ~v~d~~~~-~~-~~~~~~~~----~~~~~~~spdg~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         162 HVYDMEGR-KI-FAATTENS----HDYAPAFDADSKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             EEEETTTT-EE-EECSCSSS----BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             eeeccccC-ce-eeeccccc----ccccccccCCCCEEEEEeCCCceEccc
Confidence            99997665 22 22333322    788999999999999998888666654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-21  Score=168.74  Aligned_cols=165  Identities=12%  Similarity=0.216  Sum_probs=134.9

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCC-eEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFG-QLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      +.+|+ .++..+..+..+..  ..+++|++..+++++.++ .|++|++........+. .|.+++++++|+|++.+|++|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  180 (287)
T d1pgua2         103 LLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  180 (287)
T ss_dssp             EEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             ceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc
Confidence            45677 77777777765544  345677888888777764 79999998766555554 467889999999999999999


Q ss_pred             eCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCC----------CCEEEEEeCCCeEEEEEcCC-ceeeEec---cCC
Q 041916           79 HSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPN----------GHLMATSGKECKIKIWDLRK-YEVLQTL---PGH  143 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~----------~~~l~~~~~d~~i~iwd~~~-~~~~~~~---~~~  143 (359)
                      +.||.|++||+.++.... .+.+|..+|++++|+|+          +.+|++|+.|++|++||+++ ...+..+   .+.
T Consensus       181 ~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~  260 (287)
T d1pgua2         181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG  260 (287)
T ss_dssp             ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred             cccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence            999999999999887654 35689999999999874          56899999999999999977 4455555   457


Q ss_pred             ceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916          144 AKTLDFSQKG-LLAVGTGSFVQILGD  168 (359)
Q Consensus       144 i~~~~~s~~g-l~~~~~d~~i~i~d~  168 (359)
                      |++++|+|++ +++++.|+.|++|++
T Consensus       261 V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         261 VNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCEEEEEECCCeEEEEEE
Confidence            9999999999 999999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-21  Score=168.30  Aligned_cols=164  Identities=21%  Similarity=0.285  Sum_probs=136.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH   79 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~   79 (359)
                      .|++|| ..+..+..+.+|... ...+++++.+|++|+.||.|++||+..++++..+..|...+.++++++  ++|++|+
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s  234 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNR-VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGN  234 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSC-EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEE
T ss_pred             eEEEeecccceeeEEEcCcccc-cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEc
Confidence            478999 778888888888664 334556788999999999999999999999999999999999888765  6999999


Q ss_pred             CCCeEEEEeCCCCcceEEEec---cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------cCCceeEE
Q 041916           80 SGGTVTMWKPTTAAPLIKMLC---HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------PGHAKTLD  148 (359)
Q Consensus        80 ~dg~v~lwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~i~~~~  148 (359)
                      .||.|++||+...+....+..   |...+.++.++  ++++++|+.||+|++||+++++++..+        .+.|.+++
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            999999999999888777764   55566766665  569999999999999999999988776        23589999


Q ss_pred             EcCCc-e-EEEEcCC----cEEEEcCC
Q 041916          149 FSQKG-L-LAVGTGS----FVQILGDF  169 (359)
Q Consensus       149 ~s~~g-l-~~~~~d~----~i~i~d~~  169 (359)
                      |+|++ + ++++.||    .|.+||+.
T Consensus       313 ~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            99999 4 4555666    49999964

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=3.1e-19  Score=153.62  Aligned_cols=207  Identities=9%  Similarity=0.057  Sum_probs=153.2

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SL   77 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s   77 (359)
                      +|.||| .+++.+.++.....+..++|+|||++| ++++.++.|.+||+.+++.+..+..+. .+..++|++++..+ ++
T Consensus        13 ~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccc
Confidence            478999 999999999888788999999999977 566778999999999999999998775 46889999999755 45


Q ss_pred             EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEEcCCceeeEec----------------
Q 041916           78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT-SGKECKIKIWDLRKYEVLQTL----------------  140 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~----------------  140 (359)
                      +..++.+.+|+..+++....+..+ ....+++|+|+|..++. +..++.+.+|+..+...+..+                
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT  170 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             ccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccc
Confidence            667789999999988877777644 45678899999888654 455778888888765433221                


Q ss_pred             ----------------------------cCCceeEEEcCCc--eEEEEc---CCcEEEEcCCCCCCccceeecccCCCCc
Q 041916          141 ----------------------------PGHAKTLDFSQKG--LLAVGT---GSFVQILGDFSGSHNYSRYMGHSMVKGY  187 (359)
Q Consensus       141 ----------------------------~~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~  187 (359)
                                                  ...+..++|++++  +++++.   ++.|.+||+.++ .....+..+     .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~-----~  244 (301)
T d1l0qa2         171 KVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG-----P  244 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC-----S
T ss_pred             ceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCC-----C
Confidence                                        1123567788888  444432   367999997666 444444333     2


Q ss_pred             ceEEEEEeeCCCEE-EEEcCCCeEEEEEc
Q 041916          188 QIGKVSFRPYEDVL-GIGHSMGWSSILVP  215 (359)
Q Consensus       188 ~v~~~~~~p~~~~l-~~~~~dg~~~i~~~  215 (359)
                      .+.+++|+|+|++| ++++.++.+.+|..
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            68999999999976 44455555555543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.3e-20  Score=162.60  Aligned_cols=215  Identities=10%  Similarity=0.035  Sum_probs=152.4

Q ss_pred             CeEEEe-CCCcE---EEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCC
Q 041916            1 YPYIYN-RDGTE---LHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPFNG   73 (359)
Q Consensus         1 ~v~iwd-~~g~~---~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~   73 (359)
                      +|+||| .++..   +....+|... ++++|+|+ +.+|++|+.||.|++|++..+........+... .....+.++..
T Consensus        34 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (342)
T d1yfqa_          34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD  113 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT
T ss_pred             eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccc
Confidence            489999 44432   3333367776 99999987 468999999999999999988776666655444 44556667788


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEe----cc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------c
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKML----CH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------P  141 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~----~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~  141 (359)
                      .+++++.|+.+.+||++++.......    .+  ......+.+.+++..+++++.|+.|++||++........      .
T Consensus       114 ~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  193 (342)
T d1yfqa_         114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc
Confidence            99999999999999987654433222    11  223456777888999999999999999999876543222      2


Q ss_pred             CCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccc-----e------eecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          142 GHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYS-----R------YMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       142 ~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~-----~------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      ..+.+..+.+..   +++++.||.+.+|+.........     .      ...+.. +...|++++|+|++.+|++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~lasg~~D  272 (342)
T d1yfqa_         194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTN-LAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCS-SCCCEEEEEECTTTCCEEEEETT
T ss_pred             cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCc-ccccceeEEecCCccEEEEECCC
Confidence            345666666544   77788999999998654322111     0      111111 34479999999999999998888


Q ss_pred             CeEEEEEcC
Q 041916          208 GWSSILVPG  216 (359)
Q Consensus       208 g~~~i~~~~  216 (359)
                      |.+.+|...
T Consensus       273 g~v~vWD~~  281 (342)
T d1yfqa_         273 GIISCWNLQ  281 (342)
T ss_dssp             SCEEEEETT
T ss_pred             CEEEEEECC
Confidence            877777643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.9e-20  Score=159.09  Aligned_cols=209  Identities=11%  Similarity=0.057  Sum_probs=154.9

Q ss_pred             CeEEEe-CCCcEEEEeccCC--C-eEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCC-----CeEEEEEcC
Q 041916            1 YPYIYN-RDGTELHCLKEHG--A-VLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLG-----RTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~--~-~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp   70 (359)
                      .|+||| .+++.+..+..+.  . +.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..     .+..++|+|
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~   91 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP   91 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred             EEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC
Confidence            488999 8899999887543  2 4899999999987 5667799999999999999988876543     355799999


Q ss_pred             CCCEEEEEe------------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916           71 FNGVVSLGH------------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ  138 (359)
Q Consensus        71 ~~~~l~sg~------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  138 (359)
                      ++.++++++            .++.+.+||..++.....+.. ...+.+++|+|+|.++++++.+  +.+||..+++...
T Consensus        92 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~  168 (337)
T d1pbyb_          92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVE  168 (337)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEE
T ss_pred             CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEE
Confidence            999988775            467899999999988777764 4567899999999999998754  6778876654332


Q ss_pred             ec---------------------------------------------------------------------cCCceeEEE
Q 041916          139 TL---------------------------------------------------------------------PGHAKTLDF  149 (359)
Q Consensus       139 ~~---------------------------------------------------------------------~~~i~~~~~  149 (359)
                      .+                                                                     ...+..+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T d1pbyb_         169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEe
Confidence            21                                                                     001233445


Q ss_pred             cCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916          150 SQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG  218 (359)
Q Consensus       150 s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~  218 (359)
                      +|++.+..+.++.|.+||+.++ ..+..+. +.    ..+.+++|+|+|++|++++.+|.+.+|...+.
T Consensus       249 ~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~----~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         249 NPAKTRAFGAYNVLESFDLEKN-ASIKRVP-LP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             CTTSSEEEEEESEEEEEETTTT-EEEEEEE-CS----SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             cccceEEEEccccEEEEECCCC-cEEEEEc-CC----CCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            6666233344689999998776 3443332 22    26899999999999999888877777665443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=7.8e-20  Score=166.71  Aligned_cols=174  Identities=10%  Similarity=-0.009  Sum_probs=135.1

Q ss_pred             CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE--EEe---ccCCC
Q 041916           30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI--KML---CHQGP  104 (359)
Q Consensus        30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~--~~~---~h~~~  104 (359)
                      .-++++.+.+|.|.|||..+++++..+..+ ..+..++|||||+++++++.||+|.+||+.+++...  .+.   .|.+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            344688999999999999999999999987 468999999999999999999999999998876432  232   45666


Q ss_pred             eEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEecc--------------CCceeEEEcCCc--e-EEEEcCCcEEEE
Q 041916          105 VSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTLP--------------GHAKTLDFSQKG--L-LAVGTGSFVQIL  166 (359)
Q Consensus       105 v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~--------------~~i~~~~~s~~g--l-~~~~~d~~i~i~  166 (359)
                      +.+++|+|||++| ++++.+++|++||..+++++..+.              +....+.++|+|  + ++...++.|.+|
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            7777888999986 677889999999999998876652              234568899999  3 344466899999


Q ss_pred             cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      |..+..........+    +..+.+++|+|+|+++++++.++
T Consensus       191 d~~~~~~~~~~~i~~----g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         191 DYTDLNNLKTTEISA----ERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             ETTCSSEEEEEEEEC----CSSEEEEEECTTSCEEEEEEGGG
T ss_pred             EccCCCcceEEEEcc----cCccccceECCCCCEEEEecccc
Confidence            976542222222222    23688999999999888877655

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.2e-19  Score=162.63  Aligned_cols=171  Identities=11%  Similarity=0.005  Sum_probs=135.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEe---cCCCCeEEEEEcCCCCE
Q 041916            1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFR---TGLGRTDVMRVNPFNGV   74 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~sp~~~~   74 (359)
                      +|.||| .+++++..+..|..+..++|||||++|++++.|+.|.+||+.+++.  +..+.   .|.+.+.+.+|+|||++
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~  122 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY  122 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence            378999 9999999999988889999999999999999999999999988763  33443   34455666678889987


Q ss_pred             E-EEEeCCCeEEEEeCCCCcceEEEecc-----------CCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeE--e
Q 041916           75 V-SLGHSGGTVTMWKPTTAAPLIKMLCH-----------QGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQ--T  139 (359)
Q Consensus        75 l-~sg~~dg~v~lwd~~~~~~~~~~~~h-----------~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~--~  139 (359)
                      | ++++.++.|.+||..+++++..+..|           .+....+.++|+|..+ ++...++.|.+||..+.+...  .
T Consensus       123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~  202 (432)
T d1qksa2         123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE  202 (432)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred             EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE
Confidence            5 77888999999999999888776543           3456788999999886 455678999999998876433  3


Q ss_pred             c--cCCceeEEEcCCc--eEEEEc-CCcEEEEcCCCC
Q 041916          140 L--PGHAKTLDFSQKG--LLAVGT-GSFVQILGDFSG  171 (359)
Q Consensus       140 ~--~~~i~~~~~s~~g--l~~~~~-d~~i~i~d~~~~  171 (359)
                      +  ...+..++|+|+|  +++++. ++.+.++|..+.
T Consensus       203 i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            3  3457899999999  555554 578999987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=3.4e-18  Score=155.45  Aligned_cols=180  Identities=10%  Similarity=-0.013  Sum_probs=131.4

Q ss_pred             EEEecCC--CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE--e
Q 041916           24 LQFLRNH--FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM--L   99 (359)
Q Consensus        24 l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~--~   99 (359)
                      ..++.|.  .++++.+.||.|++||+.+++.+..+..|. .+..++|||||++|++++.||+|++||+.++++....  .
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            3455543  356778889999999999999999999874 5899999999999999999999999999998765433  2


Q ss_pred             ---ccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEecc--------------CCceeEEEcCCc--eEEE-E
Q 041916          100 ---CHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTLP--------------GHAKTLDFSQKG--LLAV-G  158 (359)
Q Consensus       100 ---~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~--------------~~i~~~~~s~~g--l~~~-~  158 (359)
                         +|.+.+.+++|+|||++++++ ..++.+.+||..++.++..+.              +....+.+++++  ++.. .
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC
Confidence               556667788888999987554 578999999999988766552              123445666666  2222 2


Q ss_pred             cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916          159 TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       159 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                      ..+.+.+++.............+.    ..+..+.|+|++++++++..+.
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~a~~~~  228 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAA----PFLADGGWDSSHRYFMTAANNS  228 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECC----SSEEEEEECTTSCEEEEEETTC
T ss_pred             CCCeEEEEEeccccceeeEEeccC----CccEeeeECCCCcEEEeeeecc
Confidence            335666666444322223333333    3789999999999988876554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=3.2e-18  Score=149.87  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=81.3

Q ss_pred             EEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEEecc
Q 041916           24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVV-SLGHSGGTVTMWKPTTAAPLIKMLCH  101 (359)
Q Consensus        24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~sg~~dg~v~lwd~~~~~~~~~~~~h  101 (359)
                      ++|++++.+|++++.+++|.+||+.+++++.++.. +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            57899999999999999999999999999998874 45678899999999876 55668899999999999887766532


Q ss_pred             C------CCeEEEEEcCCCCEEEEEe
Q 041916          102 Q------GPVSALAFHPNGHLMATSG  121 (359)
Q Consensus       102 ~------~~v~~i~~~~~~~~l~~~~  121 (359)
                      .      ..+..++|+|||+++++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEe
Confidence            2      2356788999998887664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.3e-16  Score=137.42  Aligned_cols=133  Identities=10%  Similarity=0.057  Sum_probs=93.1

Q ss_pred             CeEEEe-C-CCc--EEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEE---EecCCCCeEEEEEcCCC
Q 041916            1 YPYIYN-R-DGT--ELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGN---FRTGLGRTDVMRVNPFN   72 (359)
Q Consensus         1 ~v~iwd-~-~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~sp~~   72 (359)
                      .|+||+ . .+.  .+..+.....+.+|+|+|||++|++++ .|+.|.+|++........   ...+...+..++|+|||
T Consensus        15 ~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg   94 (333)
T d1ri6a_          15 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG   94 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS
T ss_pred             cEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCC
Confidence            378999 3 332  233444444459999999999886554 589999999976543222   22344567789999999


Q ss_pred             CEEEEEeC-CCeEEEEeCCCCcceEE--EeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 041916           73 GVVSLGHS-GGTVTMWKPTTAAPLIK--MLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRK  133 (359)
Q Consensus        73 ~~l~sg~~-dg~v~lwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~  133 (359)
                      ++|++++. ++.|.+|+.........  ...+...+.++.|+|+++++++++. +..|.+|+...
T Consensus        95 ~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          95 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            99888874 77899998776554333  3356667788889999988777664 45677777644

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=6.3e-16  Score=132.44  Aligned_cols=168  Identities=12%  Similarity=0.118  Sum_probs=133.8

Q ss_pred             EEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc
Q 041916           33 LASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH  111 (359)
Q Consensus        33 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~  111 (359)
                      .++++.|++|.+||+.+++.+.++... ..+..++|+|+|++| ++++.++.|.+||+.+++.+..+..+.. +..++|+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccc
Confidence            356678999999999999999998865 457899999999976 5677899999999999999988887664 6889999


Q ss_pred             CCCCEEEE-EeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEE-EEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916          112 PNGHLMAT-SGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLA-VGTGSFVQILGDFSGSHNYSRYMGHSMVK  185 (359)
Q Consensus       112 ~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  185 (359)
                      +++.++++ +..++.+.+||..+++.+..+  ...+.++.|+|+|  +++ +..++.+.+|+..+. .....+..+.   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---  158 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVGR---  158 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECCS---
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecccCC---
Confidence            99987655 556789999999999888777  4467899999999  433 445688999997665 3444443332   


Q ss_pred             CcceEEEEEeeCCCEEEEEcCCC
Q 041916          186 GYQIGKVSFRPYEDVLGIGHSMG  208 (359)
Q Consensus       186 ~~~v~~~~~~p~~~~l~~~~~dg  208 (359)
                        .+..++++|++..+++++.+.
T Consensus       159 --~~~~~~~~~~~~~~~~~~~~~  179 (301)
T d1l0qa2         159 --SPKGIAVTPDGTKVYVANFDS  179 (301)
T ss_dssp             --SEEEEEECTTSSEEEEEETTT
T ss_pred             --CceEEEeeccccceeeecccc
Confidence              578899999999888776654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.2e-15  Score=132.54  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=113.1

Q ss_pred             CEEEEEecCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEEeccCC----
Q 041916           31 FLLASINKFGQLRYQDVTMGEIVGNFRTG--LGRTDVMRVNPFNGVV-SLGHSGGTVTMWKPTTAAPLIKMLCHQG----  103 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l-~sg~~dg~v~lwd~~~~~~~~~~~~h~~----  103 (359)
                      .||++++.|+.|.+||+.+++.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            47999999999999999999999988754  3457899999999876 5677899999999999998888775543    


Q ss_pred             -CeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916          104 -PVSALAFHPNGHLMATSG------------KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILG  167 (359)
Q Consensus       104 -~v~~i~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d  167 (359)
                       .+..++|+|+++++++++            .+..+.+||..++..+..+  ...+..++|+|+| ++.++ ++.+.+||
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~d  160 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMD  160 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE-cCCcceee
Confidence             345799999999998876            4678999999999888777  4568899999999 43333 34567787


Q ss_pred             CCC
Q 041916          168 DFS  170 (359)
Q Consensus       168 ~~~  170 (359)
                      ..+
T Consensus       161 ~~~  163 (337)
T d1pbyb_         161 PEA  163 (337)
T ss_dssp             TTT
T ss_pred             eec
Confidence            654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=9.1e-16  Score=134.95  Aligned_cols=207  Identities=10%  Similarity=0.036  Sum_probs=141.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecCCC-------Ce
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTGLG-------RT   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v   63 (359)
                      |++|| .+|+.+.++..+... .++|||||++|++++          .|+.|++||+.+++.+..+..+..       ..
T Consensus        30 v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~  108 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP  108 (355)
T ss_dssp             EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCC
Confidence            78999 899999988876554 699999999887643          478999999999998888765432       24


Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEEeccC---------------------------------------
Q 041916           64 DVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQ---------------------------------------  102 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~---------------------------------------  102 (359)
                      ..++|+|++..++.++  .+..+.+|+..++..+..+..+.                                       
T Consensus       109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            5689999999877764  56789999988876554433211                                       


Q ss_pred             ------CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--ec-------------cCCceeEEEcCCc--eEEEEc
Q 041916          103 ------GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--TL-------------PGHAKTLDFSQKG--LLAVGT  159 (359)
Q Consensus       103 ------~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~-------------~~~i~~~~~s~~g--l~~~~~  159 (359)
                            ..+....+.+++..++.++.++.+++|++..+....  ..             +.....++++|++  +++...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~  268 (355)
T d2bbkh_         189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  268 (355)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             ccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence                  112234555666677788889999999998765321  11             1234568899998  333332


Q ss_pred             C----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE--EEEEcCCCeEEEEEc
Q 041916          160 G----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV--LGIGHSMGWSSILVP  215 (359)
Q Consensus       160 d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~dg~~~i~~~  215 (359)
                      +          +.|.+||+.++ +.+..+....     .+.+++|+|||+.  ++++..++.+.+|..
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t~-~~~~~~~~~~-----~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH-----EIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             cCCceeecCCCCeEEEEeCCCC-cEEEEecCCC-----CEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            2          47999998776 4444443221     6889999999973  344444555555443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=1.7e-15  Score=132.13  Aligned_cols=178  Identities=9%  Similarity=-0.023  Sum_probs=126.3

Q ss_pred             CeEEEe-CCCcEEEEecc-CC-CeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCC------CeEEEEEcC
Q 041916            1 YPYIYN-RDGTELHCLKE-HG-AVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLG------RTDVMRVNP   70 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~-h~-~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp   70 (359)
                      +|.||| .+++.+.++.. |. .+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.....      .+..++|+|
T Consensus        19 ~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~   98 (346)
T d1jmxb_          19 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP   98 (346)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred             EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec
Confidence            478999 99999998874 33 35999999999887 5556789999999999998887764332      356788999


Q ss_pred             CCCEEEEEe------------CCCeEEEEe-----------------------------------------CCCCcceEE
Q 041916           71 FNGVVSLGH------------SGGTVTMWK-----------------------------------------PTTAAPLIK   97 (359)
Q Consensus        71 ~~~~l~sg~------------~dg~v~lwd-----------------------------------------~~~~~~~~~   97 (359)
                      ||.++++++            .++.+.+||                                         +.+++.+..
T Consensus        99 DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (346)
T d1jmxb_          99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA  178 (346)
T ss_dssp             TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEE
T ss_pred             CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEE
Confidence            998776653            233344443                                         322222211


Q ss_pred             Ee--------------------------------------------------------------------ccCCCeEEEE
Q 041916           98 ML--------------------------------------------------------------------CHQGPVSALA  109 (359)
Q Consensus        98 ~~--------------------------------------------------------------------~h~~~v~~i~  109 (359)
                      +.                                                                    .|...+.++.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (346)
T d1jmxb_         179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL  258 (346)
T ss_dssp             ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             EecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence            11                                                                    1223345566


Q ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeec
Q 041916          110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMG  180 (359)
Q Consensus       110 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~  180 (359)
                      +++++.+++++.. +.|.+||+.+++.+..+  ...+.+++|||||  +++++.|+.|.+||..+. +.+..+..
T Consensus       259 ~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~-~~i~~i~~  331 (346)
T d1jmxb_         259 RSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL  331 (346)
T ss_dssp             ECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred             EeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC-CEEEEEEC
Confidence            6777666666553 57999999999988777  4578999999999  777888999999998776 45544443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.68  E-value=1.5e-14  Score=128.01  Aligned_cols=129  Identities=9%  Similarity=-0.067  Sum_probs=97.8

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec----------CCeEEEEECCCCeEEEEEecCCCCe-------
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK----------FGQLRYQDVTMGEIVGNFRTGLGRT-------   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v-------   63 (359)
                      |++|| .+|+.+.++..+... .++|+|||++|++++.          ++.|.+||+.+++.+..+..+....       
T Consensus        49 v~v~D~~tg~~~~~~~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~  127 (373)
T d2madh_          49 QWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS  127 (373)
T ss_pred             EEEEECCCCCEEEEEeCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC
Confidence            78999 899999988776544 7999999999988753          5789999999999988887665443       


Q ss_pred             EEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCce
Q 041916           64 DVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYE  135 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~  135 (359)
                      ..+.|+|++..++...  .++.+.+|+....+....    .....++.|+|+|..+ ++.+.|+.+.+||...+.
T Consensus       128 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         128 WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            4578888887665543  456788888876654333    3345678889988764 577788999999876544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=4.8e-14  Score=122.37  Aligned_cols=183  Identities=10%  Similarity=0.072  Sum_probs=125.6

Q ss_pred             EEEEEecCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEEe---ccCCCe
Q 041916           32 LLASINKFGQLRYQDVTMGEIVGNF--RTGLGRTDVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAPLIKML---CHQGPV  105 (359)
Q Consensus        32 ~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~---~h~~~v  105 (359)
                      .+++++.|++|++|++.+...+..+  ..|.+.+..|+|+|||++|++++ .|+.|.+|++........+.   .+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3577788999999999765433322  35778899999999999885554 58999999998765443332   334556


Q ss_pred             EEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccc
Q 041916          106 SALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYS  176 (359)
Q Consensus       106 ~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~  176 (359)
                      ..++|+|||++|++++. ++.|.+|+..........     ...+.++.++|++  +++++ .+..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            78999999999998885 678999988776543333     3467899999999  45555 446899998655433222


Q ss_pred             eeec-ccCCCCcceEEEEEeeCCCEEEEEcC-CCeEEEEE
Q 041916          177 RYMG-HSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSILV  214 (359)
Q Consensus       177 ~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i~~  214 (359)
                      .... .....+.....++|++++.+++.... .+...++.
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~  205 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE  205 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence            1111 11113346788999999988766544 34344443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.1e-13  Score=122.69  Aligned_cols=207  Identities=6%  Similarity=-0.127  Sum_probs=131.2

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecCCC-------Ce
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTGLG-------RT   63 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v   63 (359)
                      |++|| .+++.+.++..+... .++|+|||+.|++++          .|+.|.+||..+++++..+..+..       ..
T Consensus        48 ~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p  126 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             EEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCc
Confidence            67789 888888888876654 689999999888764          367899999999999888875432       23


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEEeccCC-------CeEEEEEcCCCCEEEEEeC-------------
Q 041916           64 DVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAPLIKMLCHQG-------PVSALAFHPNGHLMATSGK-------------  122 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~l~~~~~-------------  122 (359)
                      ..++|+|||++|++++ .++.+.+||+.+++.+..+..+..       ....+++++||.+++....             
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            4699999999888775 579999999999887776653322       1223444445444333321             


Q ss_pred             -----------------------CCeEEEEEcCCceeeEec---------------cCCceeEEEcCCc--eEEEE-cC-
Q 041916          123 -----------------------ECKIKIWDLRKYEVLQTL---------------PGHAKTLDFSQKG--LLAVG-TG-  160 (359)
Q Consensus       123 -----------------------d~~i~iwd~~~~~~~~~~---------------~~~i~~~~~s~~g--l~~~~-~d-  160 (359)
                                             ++.+.++++.........               ++....++++|++  +++.. .+ 
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~  286 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS  286 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred             ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC
Confidence                                   223344444333221111               1123457888887  33332 21 


Q ss_pred             -------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE--EEEEcCCCeEEEEEc
Q 041916          161 -------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV--LGIGHSMGWSSILVP  215 (359)
Q Consensus       161 -------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~~~~~dg~~~i~~~  215 (359)
                             ..|.+||..++ +.+..+...     ..+.+++|+|||+.  ++++..++.+.+|..
T Consensus       287 ~~~~~~~~~v~v~D~~t~-~~~~~~~~~-----~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         287 RSCLAAAENTSSVTASVG-QTSGPISNG-----HDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SCTTSCEEEEEEEESSSC-CEEECCEEE-----EEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             ceeecCCceEEEEECCCC-cEeEEecCC-----CceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence                   35889998777 344333322     26889999999973  334444454444443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=1.4e-12  Score=114.99  Aligned_cols=195  Identities=10%  Similarity=-0.047  Sum_probs=135.0

Q ss_pred             cCCCe-EEEEEecCCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------C
Q 041916           17 EHGAV-LKLQFLRNHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------S   80 (359)
Q Consensus        17 ~h~~~-~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~   80 (359)
                      .+..+ .+++++|||..+++..     .++.|.+||..+++.+..+..+..+  .++|+|||++|++++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            45555 8999999999887642     3467999999999999998876544  799999999998875          4


Q ss_pred             CCeEEEEeCCCCcceEEEeccCCCe-------EEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEeccCCceeEEEcC
Q 041916           81 GGTVTMWKPTTAAPLIKMLCHQGPV-------SALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLPGHAKTLDFSQ  151 (359)
Q Consensus        81 dg~v~lwd~~~~~~~~~~~~h~~~v-------~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~  151 (359)
                      ++.|.+||+.+++.+..+..+....       ..+.|+|++..++...  .++.+.+|+....+...... .+.++.++|
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~  174 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-SPTCYHIHP  174 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-cceeEEEec
Confidence            6789999999999888776555433       4578889988766554  45688999988876655553 356888999


Q ss_pred             Cc---eEEEEcCCcEEEEcCCCCCCccceeecccCC--CCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916          152 KG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV--KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG  216 (359)
Q Consensus       152 ~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~  216 (359)
                      +|   +++.+.|+.+.+|+.... ........+...  .......+.+.+++.++ ..+.++.+.++...
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~  242 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGG-AAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADIS  242 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCc-eeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcC
Confidence            98   567788999999997665 333322221110  11123444555555444 44455555554433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.42  E-value=1.5e-11  Score=107.47  Aligned_cols=190  Identities=10%  Similarity=0.006  Sum_probs=125.0

Q ss_pred             EEecCCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE----------eCCCeEEEEeC
Q 041916           25 QFLRNHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG----------HSGGTVTMWKP   89 (359)
Q Consensus        25 ~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg----------~~dg~v~lwd~   89 (359)
                      +.+||+..+++..     .++.|.+||..+++.+.++..+..+  .++|||||++|++.          +.|+.|.+||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            5689998887653     3567999999999999998876544  79999999987764          35789999999


Q ss_pred             CCCcceEEEeccCC-------CeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEeccCCc--eeEEEcCCceEEEE
Q 041916           90 TTAAPLIKMLCHQG-------PVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLPGHA--KTLDFSQKGLLAVG  158 (359)
Q Consensus        90 ~~~~~~~~~~~h~~-------~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~i--~~~~~s~~gl~~~~  158 (359)
                      .+++.+..+..+..       ....++|+|+|.++++++  .+..+.+||..+++.+..+..+-  ......+...++.+
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            99998887764332       235689999999988775  45789999999998887763221  11111111144444


Q ss_pred             cCCcEEEEcCCCCCCccceeec--ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916          159 TGSFVQILGDFSGSHNYSRYMG--HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS  217 (359)
Q Consensus       159 ~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~  217 (359)
                      .|+...++........ .....  ........+....+.+++..++.++.++.+.++....
T Consensus       166 ~dg~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTP-EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             TTSCEEEEECCSSSCC-EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             CCCCEEEEEecCCCeE-EEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence            4444443332222111 11100  0000122456677888888898888888777766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=2.6e-11  Score=106.93  Aligned_cols=178  Identities=9%  Similarity=-0.083  Sum_probs=115.6

Q ss_pred             CeEEEe-CCCcEEEEeccCCC--------eEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEecCCCC-------e
Q 041916            1 YPYIYN-RDGTELHCLKEHGA--------VLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTGLGR-------T   63 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~~--------~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~-------v   63 (359)
                      +|.+|| .+++++..+..+..        +..++|+|||++|++++ .++.|.+||+.+++.+..+..+...       .
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  176 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCc
Confidence            378999 88999888765432        25799999999888776 5799999999999988887654332       2


Q ss_pred             EEEEEcCCCCEEEEEeCC------------------------------------CeEEEEeCCCCcceEEEe--c-----
Q 041916           64 DVMRVNPFNGVVSLGHSG------------------------------------GTVTMWKPTTAAPLIKML--C-----  100 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~d------------------------------------g~v~lwd~~~~~~~~~~~--~-----  100 (359)
                      ..+.+++||.+++....+                                    +.+.++++..........  .     
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccccee
Confidence            334555555544433221                                    222233332222111100  0     


Q ss_pred             -----cCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceeeEec--cCCceeEEEcCCc---eEEE-EcC
Q 041916          101 -----HQGPVSALAFHPNGHLMATSGKE---------CKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG---LLAV-GTG  160 (359)
Q Consensus       101 -----h~~~v~~i~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g---l~~~-~~d  160 (359)
                           ..+....++++|++..++....+         ..|.+||..+++.+..+  ...+.+++|+|||   +++. ..+
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~  336 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTT
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC
Confidence                 01122457888988887665322         35999999999988877  3567899999998   3333 357


Q ss_pred             CcEEEEcCCCCCCccceee
Q 041916          161 SFVQILGDFSGSHNYSRYM  179 (359)
Q Consensus       161 ~~i~i~d~~~~~~~~~~~~  179 (359)
                      +.|.+||..++ +.+..+.
T Consensus       337 ~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         337 EVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             TEEEEEESSSC-EEEEECC
T ss_pred             CeEEEEECCCC-CEEEEEE
Confidence            89999998777 4444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.26  E-value=1.3e-09  Score=96.76  Aligned_cols=191  Identities=8%  Similarity=-0.066  Sum_probs=127.2

Q ss_pred             EEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCC--EEEEEeCCC---------------
Q 041916           22 LKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNG--VVSLGHSGG---------------   82 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~--~l~sg~~dg---------------   82 (359)
                      ....++|||++|++. ..++.|.++|+.++++...+.. +...++.++|+|+|+  ++++++.+.               
T Consensus        75 s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          75 SMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             ceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            555568999988665 4688999999999998887764 456789999999997  555544432               


Q ss_pred             --eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-------------------------------------
Q 041916           83 --TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-------------------------------------  123 (359)
Q Consensus        83 --~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-------------------------------------  123 (359)
                        .+..+|..+.+....+... +....++|+|+|+++++++.+                                     
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred             cceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence              2355788887776666543 346789999999998887644                                     


Q ss_pred             ----CeEEEEEcCCceeeEec--cCCceeEEEcCCc-eE-E-EEcCCcEEEEcCCCCC-------CccceeecccCCCCc
Q 041916          124 ----CKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LL-A-VGTGSFVQILGDFSGS-------HNYSRYMGHSMVKGY  187 (359)
Q Consensus       124 ----~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~-~-~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~  187 (359)
                          +.+.+++......+..+  ......+.++||| ++ + +..+++|.+||+.+..       .....+.++.. .+-
T Consensus       234 v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~-~gl  312 (441)
T d1qnia2         234 IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE-LGL  312 (441)
T ss_dssp             CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB-CCS
T ss_pred             eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc-ccc
Confidence                23333433433444444  3456889999999 33 3 3467999999965421       11122222221 122


Q ss_pred             ceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916          188 QIGKVSFRPYEDVLGIGHSMGWSSILV  214 (359)
Q Consensus       188 ~v~~~~~~p~~~~l~~~~~dg~~~i~~  214 (359)
                      .....+|+++|..+.+...|..+..|.
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             CcccceecCCceEEEcccccceEEEec
Confidence            345568899887777777777666665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.26  E-value=1.4e-09  Score=93.06  Aligned_cols=201  Identities=9%  Similarity=0.022  Sum_probs=139.1

Q ss_pred             CcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916            9 GTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK   88 (359)
Q Consensus         9 g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd   88 (359)
                      .+.+..+....-+..++++|||+++++...++.|..||.. +. ...+......+.+++|+|+|+++++...++.+..|+
T Consensus        18 ~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          18 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ccEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence            3456667665556889999999999999889999999865 44 334445667899999999999999998888888888


Q ss_pred             CCCCcce-EEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------------cCCceeEEEcCC
Q 041916           89 PTTAAPL-IKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------------PGHAKTLDFSQK  152 (359)
Q Consensus        89 ~~~~~~~-~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------~~~i~~~~~s~~  152 (359)
                      ....... ..+.  ......+.+++.++|+++++.+.++.+..+|...+......             ...+..+.++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~  175 (302)
T d2p4oa1          96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN  175 (302)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred             ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence            6543322 2221  23456789999999999998888999999998876532211             112456677665


Q ss_pred             c-eEEEEcCCcEEEEcCCCCCCccce-eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          153 G-LLAVGTGSFVQILGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       153 g-l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      . +++.+..+.|..++.......... ....    ......++|+++|.++++...++.+..+.+
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ceeeecCCCCeEEeccccccccccccccccC----CCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            5 444556688888886544222111 1111    114667999999988777777776655543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.25  E-value=3.3e-11  Score=109.90  Aligned_cols=134  Identities=13%  Similarity=0.071  Sum_probs=105.6

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNPFNGVVSLGHS---------GGTVTMW   87 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~sg~~---------dg~v~lw   87 (359)
                      ..+.|.+++.++..  .++.|.+||+.+++....+..     |...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            56789999987764  478899999999987665554     4467999999999999988753         5788999


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---------------------CCcee
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---------------------GHAKT  146 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------------------~~i~~  146 (359)
                      |+.+++ +..+..+...+..+.|||||++||... ++.+.+|+..++.......                     +....
T Consensus        98 d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999876 445778889999999999999999965 6789999999887654331                     22466


Q ss_pred             EEEcCCc--eEEEEc
Q 041916          147 LDFSQKG--LLAVGT  159 (359)
Q Consensus       147 ~~~s~~g--l~~~~~  159 (359)
                      +.|||||  ++....
T Consensus       176 ~~wSPDGk~ia~~~~  190 (470)
T d2bgra1         176 LWWSPNGTFLAYAQF  190 (470)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             cEECCCCCccceeEe
Confidence            8899999  444443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=8.6e-09  Score=86.00  Aligned_cols=200  Identities=11%  Similarity=0.102  Sum_probs=120.6

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |+|.|.+|.....+..+... ...+|||||+.||.....   ..+.+.+...+.. ..+..+.+......|+|+|..++.
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeE
Confidence            66777667655555544554 899999999999876543   3577778776654 445556778889999999988776


Q ss_pred             EeC-CCeEEEEeCCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCC--eEEEEEcCCceeeEec--cCCceeEEEc
Q 041916           78 GHS-GGTVTMWKPTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSG-KEC--KIKIWDLRKYEVLQTL--PGHAKTLDFS  150 (359)
Q Consensus        78 g~~-dg~v~lwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~--~~~i~~~~~s  150 (359)
                      .+. ++...++.... ..................+++++..++..+ .++  .|.+.++..+......  ........|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccc
Confidence            553 33322222221 222233333444556677888877755544 444  4666666665432222  4456778999


Q ss_pred             CCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916          151 QKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM  207 (359)
Q Consensus       151 ~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  207 (359)
                      |+|  ++..+ .++...+|............ ....    ......|+|||+.|+..+..
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~p~~SPDG~~i~f~s~~  234 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-SSTF----LDETPSLAPNGTMVIYSSSQ  234 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEEEC-CCSS----SCEEEEECTTSSEEEEEEEE
T ss_pred             cccceeEEEeecCCceeeeEeecccccceEe-ecCc----cccceEECCCCCEEEEEEcC
Confidence            999  44444 34444444332222222222 2222    56788999999988765543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=1.5e-10  Score=105.39  Aligned_cols=142  Identities=11%  Similarity=0.090  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-----ccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 041916           64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-----CHQGPVSALAFHPNGHLMATSGK---------ECKIKIW  129 (359)
Q Consensus        64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-----~h~~~v~~i~~~~~~~~l~~~~~---------d~~i~iw  129 (359)
                      ..+.|.+++.++..  .|+.+.+||+.+++....+.     .|...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999987764  57889999999998766554     34567999999999999998753         4678999


Q ss_pred             EcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccC--------------CCCcceEEE
Q 041916          130 DLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM--------------VKGYQIGKV  192 (359)
Q Consensus       130 d~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~v~~~  192 (359)
                      |+.+++.....  +..+..+.||||| .++...++.+++|+..++. ..........              ........+
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            99998754322  5578999999999 6666778999999976663 2222111100              011234668


Q ss_pred             EEeeCCCEEEEEcCCC
Q 041916          193 SFRPYEDVLGIGHSMG  208 (359)
Q Consensus       193 ~~~p~~~~l~~~~~dg  208 (359)
                      .|+|||+.|++...|.
T Consensus       177 ~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         177 WWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EECTTSSEEEEEEEEC
T ss_pred             EECCCCCccceeEecC
Confidence            8999999999987553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=5.5e-09  Score=87.20  Aligned_cols=189  Identities=10%  Similarity=-0.036  Sum_probs=125.3

Q ss_pred             CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      ..+..+++++++.++++....+.|++++-.++..+.... ....+.++++.++++++++-..+..+..++..........
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~  135 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  135 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeee
Confidence            345889999999988877767777776655554443332 2345789999999998888777777888876654322211


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEc-CCcEEEEcCCCCCC
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGT-GSFVQILGDFSGSH  173 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~-d~~i~i~d~~~~~~  173 (359)
                      ........+|+++|+|+++++...++.|..+|..........   -..+..|+++++| ++++.. .+.|..++....  
T Consensus       136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~--  213 (260)
T d1rwia_         136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST--  213 (260)
T ss_dssp             CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS--
T ss_pred             ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC--
Confidence            122234578999999998888888889999998764433222   2356889999999 666664 567888874333  


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL  213 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~  213 (359)
                      ....+...   .-.....|+++++|.++++-..++.+..+
T Consensus       214 ~~~~~~~~---~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         214 TSTVLPFT---GLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             CCEECCCC---SCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eEEEEccC---CCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence            22222111   11256889999999877665555544433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.11  E-value=2.1e-09  Score=95.50  Aligned_cols=126  Identities=9%  Similarity=-0.023  Sum_probs=91.9

Q ss_pred             EEEEecCCeEEEEECCCCeEEEEEec------------------------------CCCCeEEEEEcCCCCEEEEE-eCC
Q 041916           33 LASINKFGQLRYQDVTMGEIVGNFRT------------------------------GLGRTDVMRVNPFNGVVSLG-HSG   81 (359)
Q Consensus        33 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~sp~~~~l~sg-~~d   81 (359)
                      ++|++.+|.|.+||+.+++.+..+..                              |........++|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            57788899999999999998887632                              22223444457899887555 578


Q ss_pred             CeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCE--EEEEeCCC-----------------eEEEEEcCCceeeEec-
Q 041916           82 GTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHL--MATSGKEC-----------------KIKIWDLRKYEVLQTL-  140 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~--l~~~~~d~-----------------~i~iwd~~~~~~~~~~-  140 (359)
                      ..|.++|+.+++....+. .+...+..++|+|+|+.  ++..+.+.                 .+..+|..+.+...++ 
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877665 34567899999999985  44444332                 2355788887776665 


Q ss_pred             -cCCceeEEEcCCc--eEEEE
Q 041916          141 -PGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       141 -~~~i~~~~~s~~g--l~~~~  158 (359)
                       .+.+..+.++|+|  +++.+
T Consensus       174 v~~~p~~v~~spdGk~a~vt~  194 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTC  194 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEE
T ss_pred             cCCCccceEECCCCCEEEEEe
Confidence             5678899999999  44444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=2.5e-08  Score=84.97  Aligned_cols=202  Identities=10%  Similarity=-0.022  Sum_probs=128.7

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFR-TGLGRTDVMRVNPFNGVVSLG   78 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~-~~~~~v~~~~~sp~~~~l~sg   78 (359)
                      |+.|+.+|...........+.+++|+|+|+++++...++.+..|+....  ....... .....++.+++.+++.++++.
T Consensus        51 I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~  130 (302)
T d2p4oa1          51 IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD  130 (302)
T ss_dssp             EEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred             EEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeec
Confidence            4556666665443333344599999999999998888888888886543  2222111 244568899999999999988


Q ss_pred             eCCCeEEEEeCCCCcceEEEe----------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCC
Q 041916           79 HSGGTVTMWKPTTAAPLIKML----------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGH  143 (359)
Q Consensus        79 ~~dg~v~lwd~~~~~~~~~~~----------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~  143 (359)
                      +.++.+..+|...+.......          ........++++. +.++++.+..+.|..+++.........     ...
T Consensus       131 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  209 (302)
T d2p4oa1         131 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN  209 (302)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC
T ss_pred             cccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCC
Confidence            889999999987764332221          1112345666653 334556667889999988764322211     345


Q ss_pred             ceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE---eeCCCEEEEEcCCC
Q 041916          144 AKTLDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF---RPYEDVLGIGHSMG  208 (359)
Q Consensus       144 i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~l~~~~~dg  208 (359)
                      +..++++++| ++++ ..++.|..|+.. + ..........  .....++++|   .+|++.|.+++..|
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G-~~~~~~~~~~--~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CcceEECCCCCEEEEEcCCCcEEEECCC-C-CEEEEEecCC--CCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            6789999999 5544 467889999853 3 2211111111  1225789999   66778776655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.04  E-value=2.4e-07  Score=77.77  Aligned_cols=194  Identities=14%  Similarity=0.160  Sum_probs=134.6

Q ss_pred             eEEEeCCCcEEEEeccCC-------CeEEEEEecCC-CEEEEE-ecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCC
Q 041916            2 PYIYNRDGTELHCLKEHG-------AVLKLQFLRNH-FLLASI-NKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPF   71 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~-------~~~~l~~s~~~-~~l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~   71 (359)
                      |++||.+|..+..+....       .+..+++.++. .++++. +.++.|.+++. .+.....+.. .......+++.++
T Consensus        46 I~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~  124 (279)
T d1q7fa_          46 IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNK  124 (279)
T ss_dssp             EEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTT
T ss_pred             EEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccC
Confidence            677888888877774321       23667777654 444433 44568888886 4666666643 3456789999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCc
Q 041916           72 NGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHA  144 (359)
Q Consensus        72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i  144 (359)
                      +.++++....+.+.+++.+ ++.+..+.  .+......++++++++.+++....+.|.+||.. ++.+.++.     ..+
T Consensus       125 G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYP  202 (279)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSE
T ss_pred             CcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCC
Confidence            9998888888889999865 55566553  455677899999999988888888999999975 56666662     246


Q ss_pred             eeEEEcCCc-eEEEEc--CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916          145 KTLDFSQKG-LLAVGT--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       145 ~~~~~s~~g-l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  202 (359)
                      ..|++.|+| ++++..  +..|.+|+ ..+ ..+..+....  .......+++.|+|.+++
T Consensus       203 ~giavD~~G~i~Vad~~~~~~v~~f~-~~G-~~~~~~~~~~--~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         203 IGVGINSNGEILIADNHNNFNLTIFT-QDG-QLISALESKV--KHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC-TTS-CEEEEEEESS--CCSCEEEEEEETTTEEEE
T ss_pred             cccccccCCeEEEEECCCCcEEEEEC-CCC-CEEEEEeCCC--CCCCEeEEEEeCCCcEEE
Confidence            899999999 665543  34699998 344 4444443321  223578899999986443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.03  E-value=1.5e-07  Score=80.48  Aligned_cols=181  Identities=12%  Similarity=0.061  Sum_probs=114.3

Q ss_pred             eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC----CCeEEEEEcCCCCEEEEEeC---------------C
Q 041916           21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL----GRTDVMRVNPFNGVVSLGHS---------------G   81 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~sg~~---------------d   81 (359)
                      +..++|.+++..|++++....|..+|...+..........    ..++.+++.|+|.+.++-..               +
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            4789999999988888777789999987554222111111    13678999999998877432               3


Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC----EE-EEEeCCCeEEEEEcCCc-ee-----eEecc----CCcee
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH----LM-ATSGKECKIKIWDLRKY-EV-----LQTLP----GHAKT  146 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~----~l-~~~~~d~~i~iwd~~~~-~~-----~~~~~----~~i~~  146 (359)
                      |.|..++.. ++.. .+...-..-+.++|+|++.    .| ++-+..+.|..||+... ..     ...+.    +....
T Consensus       153 G~v~~~~~d-g~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdG  230 (314)
T d1pjxa_         153 GSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADG  230 (314)
T ss_dssp             EEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEE
T ss_pred             ceEEEEeec-Ccee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccccee
Confidence            456556543 3322 2222233347899999765    44 44567789999987643 21     12222    23568


Q ss_pred             EEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCC
Q 041916          147 LDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMG  208 (359)
Q Consensus       147 ~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg  208 (359)
                      +++.++| ++++ ...+.|.+||...+ .....+...    ...+++++|.|+++.| ++.+.+|
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~g-~~~~~i~~p----~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECS----SSCEEEEEECTTSSEEEEEETTTT
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCCC-EEEEEEECC----CCCEEEEEEeCCCCEEEEEECCCC
Confidence            9999999 5544 45789999996544 444444332    2268899999998744 4434444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=7.5e-08  Score=80.98  Aligned_cols=166  Identities=11%  Similarity=0.124  Sum_probs=124.5

Q ss_pred             eEEEeCCCcEEEEeccC--CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEH--GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h--~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s   77 (359)
                      |.+++.+|.....+...  ..+..+++.+++.++++....+.+.+++.. ++.+..+.  .+......+++.++++++++
T Consensus        95 i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_          95 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             cccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEee
Confidence            34556667776666432  224889999999988887778889998864 67777664  35567889999999999999


Q ss_pred             EeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEecc-----CCceeEEE
Q 041916           78 GHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTLP-----GHAKTLDF  149 (359)
Q Consensus        78 g~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~-----~~i~~~~~  149 (359)
                      ....+.|.+||.. ++.+.++.  +......+|+++|+|+++++-+. ++.|.+|+. +++.+..+.     .....|++
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence            9999999999964 56666653  33445789999999997776544 457999984 577776661     24689999


Q ss_pred             cCCc-eEEEEcCCcEEEEcCCC
Q 041916          150 SQKG-LLAVGTGSFVQILGDFS  170 (359)
Q Consensus       150 s~~g-l~~~~~d~~i~i~d~~~  170 (359)
                      .|+| ++++..++.|++|....
T Consensus       252 ~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         252 MDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             ETTTEEEEEETTTEEEEEECSC
T ss_pred             eCCCcEEEEeCCCeEEEEEeee
Confidence            9999 77777888999998544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=1.9e-08  Score=83.81  Aligned_cols=190  Identities=9%  Similarity=-0.014  Sum_probs=121.4

Q ss_pred             CeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916           20 AVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM   98 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~   98 (359)
                      .+.+++++++|++.++. +..+.|..++...................+++++++.++++....+.+.+++..+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            46999999999876654 45577777766543322222222235678999999998888777777776665544333222


Q ss_pred             eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c--cCCceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCC
Q 041916           99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L--PGHAKTLDFSQKG-LLAV-GTGSFVQILGDFSGSH  173 (359)
Q Consensus        99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~--~~~i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~  173 (359)
                      . ......+++++++++++++-..+..+..++......... .  ......++++|+| ++++ ..++.|..++......
T Consensus        95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            2 234568999999999888776777788887765432221 1  2356889999998 5444 4567899998554321


Q ss_pred             ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                       .......    ......+++.++|.++++....+.+..+.+
T Consensus       174 -~~~~~~~----~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         174 -VVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             -EECCCSS----CCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             -eeeeccc----cCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence             1111111    125688999999988888777776555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.96  E-value=3.8e-07  Score=79.70  Aligned_cols=151  Identities=13%  Similarity=0.141  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceE---EEe--ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce
Q 041916           63 TDVMRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLI---KML--CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYE  135 (359)
Q Consensus        63 v~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~---~~~--~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~  135 (359)
                      ++++.|+|+|+++++++. ...|.+|+......+.   ...  ......+.++|+|+++++++.. .+++|.+||+....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            578999999998877753 4578888765432222   122  2234578899999999986665 57899999987643


Q ss_pred             e--eEe---c---c--------------CCceeEEEcCCc--eEEEE-cC-----CcEEEEcCCCCCCccceee-cccCC
Q 041916          136 V--LQT---L---P--------------GHAKTLDFSQKG--LLAVG-TG-----SFVQILGDFSGSHNYSRYM-GHSMV  184 (359)
Q Consensus       136 ~--~~~---~---~--------------~~i~~~~~s~~g--l~~~~-~d-----~~i~i~d~~~~~~~~~~~~-~~~~~  184 (359)
                      .  +..   .   .              .....+.++|+|  ++++. .+     +.|..|++........... .....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  306 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT  306 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence            2  111   1   0              123578999999  44443 22     2377777554322222111 11111


Q ss_pred             CCcceEEEEEee-CCCEEEEEcC-CCeEEEE
Q 041916          185 KGYQIGKVSFRP-YEDVLGIGHS-MGWSSIL  213 (359)
Q Consensus       185 ~~~~v~~~~~~p-~~~~l~~~~~-dg~~~i~  213 (359)
                      .+....+++++| +|++|+++.. ++.+.+|
T Consensus       307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            233567799998 7887766543 3444444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=8.7e-07  Score=75.80  Aligned_cols=193  Identities=9%  Similarity=-0.031  Sum_probs=125.2

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCcceEE
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS----GGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~----dg~v~lwd~~~~~~~~~   97 (359)
                      ..++|.++|++.++-...+.|..||..++.....+.........++++++|.++++...    .+.|...+.........
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~  122 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  122 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence            68999999997777777899999999877766666556667899999999998877643    34456666655544333


Q ss_pred             Eec--cCCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEE-EcCCcE
Q 041916           98 MLC--HQGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAV-GTGSFV  163 (359)
Q Consensus        98 ~~~--h~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~-~~d~~i  163 (359)
                      ...  -....+.+++.|+|++.++...      .+.+..++..... +..+   -...+.++|+|++  ++.+ +..+.|
T Consensus       123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCce
Confidence            321  1234678999999987666432      2345555554332 2222   2345789999998  5444 456899


Q ss_pred             EEEcCCCCCCccceeec---ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          164 QILGDFSGSHNYSRYMG---HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       164 ~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      ..|++............   ...........+++.++|++.++....|.+.++.+
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            99986544333222111   10001123567899999988777777776666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.76  E-value=6.9e-07  Score=77.98  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=97.6

Q ss_pred             eEEEEEecCCCEEEEEec-CCeEEEEECCC-CeEE--EEEe--cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc
Q 041916           21 VLKLQFLRNHFLLASINK-FGQLRYQDVTM-GEIV--GNFR--TGLGRTDVMRVNPFNGVVSLG-HSGGTVTMWKPTTAA   93 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~--~~~~--~~~~~v~~~~~sp~~~~l~sg-~~dg~v~lwd~~~~~   93 (359)
                      +.++.|+|||++|++++. ...|.+|+... +...  ..+.  ........++|+|+++++++. -.+++|.+|++....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            489999999998888764 45788887654 3322  2222  234567899999999877554 468899999987654


Q ss_pred             ceEEEe-------------------ccCCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeE------ec--
Q 041916           94 PLIKML-------------------CHQGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQ------TL--  140 (359)
Q Consensus        94 ~~~~~~-------------------~h~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~------~~--  140 (359)
                      ......                   .+......+.++|||++|+++..      ...|..|++.....+.      ..  
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  306 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT  306 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence            322111                   01123457899999999988753      2347778776532211      11  


Q ss_pred             -cCCceeEEEcC-Cc--eEEEE-cCCcEEEEcCC
Q 041916          141 -PGHAKTLDFSQ-KG--LLAVG-TGSFVQILGDF  169 (359)
Q Consensus       141 -~~~i~~~~~s~-~g--l~~~~-~d~~i~i~d~~  169 (359)
                       ......++++| +|  +++++ .++.|.+|+..
T Consensus       307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence             23568899998 67  44443 56899999853

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=1.4e-05  Score=67.18  Aligned_cols=193  Identities=13%  Similarity=0.041  Sum_probs=122.1

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT----GLGRTDVMRVNPFNGVVSL   77 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s   77 (359)
                      |+.||..+.....+.-...+.++++.+++.+++++ .+ -|.++|..+++.......    ....++.+.+.|+|++.++
T Consensus        42 I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~  119 (295)
T d2ghsa1          42 LHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG  119 (295)
T ss_dssp             EEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEE
Confidence            45566333334444444456889999998877754 44 599999998875433321    1235788999999997776


Q ss_pred             EeC----CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEEcCCc------ee--eEec---c
Q 041916           78 GHS----GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT-SGKECKIKIWDLRKY------EV--LQTL---P  141 (359)
Q Consensus        78 g~~----dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~-~~~d~~i~iwd~~~~------~~--~~~~---~  141 (359)
                      ...    .+.-.+|.+..++....+.. -..-+.++|+++++.++. -+..+.|..|++...      +.  ...+   .
T Consensus       120 ~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~  198 (295)
T d2ghsa1         120 TMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK  198 (295)
T ss_dssp             EEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS
T ss_pred             eccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc
Confidence            542    23345666656654333332 334578999999987654 456788999987431      11  1122   3


Q ss_pred             CCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEE
Q 041916          142 GHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGI  203 (359)
Q Consensus       142 ~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~  203 (359)
                      +.+..+++..+| +.++. ..+.|..||. .+ +.+..+...    ...+++++|- |+.+.|.+
T Consensus       199 g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G-~~~~~i~lP----~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         199 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVP----GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECS----CSBEEEEEEESTTSCEEEE
T ss_pred             ccccceEEcCCCCEEeeeeCCCceEEecC-CC-cEeeEecCC----CCceEEEEEeCCCCCEEEE
Confidence            456889999999 55555 5678999994 44 455544432    2268999996 56665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=3.6e-06  Score=71.79  Aligned_cols=184  Identities=10%  Similarity=0.043  Sum_probs=113.8

Q ss_pred             CeEEEEEecCCCEEEEEec----CCeEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEeC------CCeEEEE
Q 041916           20 AVLKLQFLRNHFLLASINK----FGQLRYQDVTMGEIVGNFRT--GLGRTDVMRVNPFNGVVSLGHS------GGTVTMW   87 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~sg~~------dg~v~lw   87 (359)
                      .+..++|+++|.++++...    .+.|...+..++........  ....++.+++.|+|++.++...      .+.+..+
T Consensus        83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~  162 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  162 (319)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence            4589999999988776543    34456666655554433332  1235788999999987776432      2346666


Q ss_pred             eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCc-eeeE--------ecc--CCceeEEEcCCc-e
Q 041916           88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKY-EVLQ--------TLP--GHAKTLDFSQKG-L  154 (359)
Q Consensus        88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~-~~~~--------~~~--~~i~~~~~s~~g-l  154 (359)
                      +.... .+..+...-...+.|+|+|+++.|+.+ +..+.|..||+... ....        .+.  .....|++.++| +
T Consensus       163 ~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l  241 (319)
T d2dg1a1         163 SPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  241 (319)
T ss_dssp             CTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             ecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence            65433 333333333445789999999876554 56789999998642 1111        111  235789999999 5


Q ss_pred             EE-EEcCCcEEEEcCCCCCCccceeecccC--CCCcceEEEEEeeCCCEEEEEcC
Q 041916          155 LA-VGTGSFVQILGDFSGSHNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHS  206 (359)
Q Consensus       155 ~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~  206 (359)
                      ++ ...++.|.+||. .+ ..+..+.....  .+...+++++|.|....+++.+.
T Consensus       242 ~Va~~~~g~V~~~~p-~G-~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         242 YVAMYGQGRVLVFNK-RG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEETTTEEEEECT-TS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEcCCCEEEEECC-CC-cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            44 456789999994 45 44443322110  01225789999998877766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=7.7e-06  Score=67.39  Aligned_cols=187  Identities=15%  Similarity=0.106  Sum_probs=109.1

Q ss_pred             EEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 041916            3 YIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-FG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL-   77 (359)
Q Consensus         3 ~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-   77 (359)
                      ++++..+.....+..+.+. ....|+|+|..++.... ++  .+..+........ .............+++++..++. 
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  144 (269)
T d2hqsa1          66 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFT  144 (269)
T ss_dssp             EEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceec
Confidence            3444333333444455555 88999999988876553 22  2333333333332 23334444556677787765444 


Q ss_pred             EeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEec-cCCceeEEEcC
Q 041916           78 GHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTL-PGHAKTLDFSQ  151 (359)
Q Consensus        78 g~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~s~  151 (359)
                      ...+|.  |.+.++..+. ...+..+........|+|++..++..+.++   .|.+.|...+...... .+......|||
T Consensus       145 ~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SP  223 (269)
T d2hqsa1         145 SDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAP  223 (269)
T ss_dssp             ECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECT
T ss_pred             ccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECC
Confidence            444554  5555665543 333445566778889999999988766543   4555565555432222 44567889999


Q ss_pred             Cc--eEEEE-cC--CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916          152 KG--LLAVG-TG--SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       152 ~g--l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                      ||  ++..+ .+  ..|+++++..+  ....+.....    .+...+|+|-
T Consensus       224 DG~~i~f~s~~~~~~~l~~~~~dg~--~~~~lt~~~g----~~~~p~WSP~  268 (269)
T d2hqsa1         224 NGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDG----QVKFPAWSPY  268 (269)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSS----EEEEEEECCC
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCC--CEEEEeCCCC----cEEeEEeCCC
Confidence            99  43333 22  47888986544  3333443333    6888899983

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.8e-07  Score=82.31  Aligned_cols=195  Identities=8%  Similarity=0.024  Sum_probs=117.8

Q ss_pred             eEEEe-CCCcEEEEeccCC----CeEEEEEecCCCEEEEEe---------cCCeEEEEECCCCeEEEEEe--cCCCCeEE
Q 041916            2 PYIYN-RDGTELHCLKEHG----AVLKLQFLRNHFLLASIN---------KFGQLRYQDVTMGEIVGNFR--TGLGRTDV   65 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~----~~~~l~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~   65 (359)
                      |.+|| .+++....+..+.    .+....||||+++++...         ..+.+.++|+.++.......  .....+..
T Consensus        39 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~  118 (465)
T d1xfda1          39 VRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQY  118 (465)
T ss_dssp             EEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSB
T ss_pred             EEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccce
Confidence            56788 6666544444322    237788999999887764         35789999999887533222  23345667


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCC-----------------eEEEEEcCCCCEEEEEeCC-C--
Q 041916           66 MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGP-----------------VSALAFHPNGHLMATSGKE-C--  124 (359)
Q Consensus        66 ~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~-----------------v~~i~~~~~~~~l~~~~~d-~--  124 (359)
                      ..|||||..||... ++.|.+.+..++..++... +..+.                 -.++.|||||++||....| .  
T Consensus       119 ~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V  197 (465)
T d1xfda1         119 AGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV  197 (465)
T ss_dssp             CCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred             eeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccc
Confidence            89999999888765 5678888887665544332 21111                 2578899999999987422 1  


Q ss_pred             -------------------------------eEEEEEcCCceeeEec-c--------CCceeEEEcCCc-eEEEEc--C-
Q 041916          125 -------------------------------KIKIWDLRKYEVLQTL-P--------GHAKTLDFSQKG-LLAVGT--G-  160 (359)
Q Consensus       125 -------------------------------~i~iwd~~~~~~~~~~-~--------~~i~~~~~s~~g-l~~~~~--d-  160 (359)
                                                     .+.++|+.++...... +        ..+..+.|+|++ +++...  + 
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q  277 (465)
T d1xfda1         198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ  277 (465)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred             ceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccc
Confidence                                           2445555443221111 0        124678999999 444332  2 


Q ss_pred             --CcEEEEcCCCCCCccceeecccCCCCcc----eEEEEEeeCCCEE
Q 041916          161 --SFVQILGDFSGSHNYSRYMGHSMVKGYQ----IGKVSFRPYEDVL  201 (359)
Q Consensus       161 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~l  201 (359)
                        ..|.++|..++ .....+....   ...    -....|+|+|..+
T Consensus       278 ~~~~i~~~d~~tg-~~~~~~~e~~---~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         278 NVSILTLCDATTG-VCTKKHEDES---EAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CEEEEEEEETTTC-CEEEEEEEEC---SSCCCCCCCCCEECTTSCSE
T ss_pred             ccceEEEEcCCCC-cEEEEEEEcC---CceEeccCCceeEccCCCee
Confidence              36788887666 3333322221   111    2346789998854

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.50  E-value=5.9e-06  Score=70.25  Aligned_cols=132  Identities=14%  Similarity=0.207  Sum_probs=93.2

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEecCCC-----EEEEEecCCeEEEEECCCCeEEE------EEec-CCCCeEEEEEc
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHF-----LLASINKFGQLRYQDVTMGEIVG------NFRT-GLGRTDVMRVN   69 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~-----~l~s~~~dg~i~iwd~~~~~~~~------~~~~-~~~~v~~~~~s   69 (359)
                      |+.++.+|........-..++.++|+|++.     ++++-+..+.|..||+.....+.      .+.. +......|++.
T Consensus       155 v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD  234 (314)
T d1pjxa_         155 IYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             EEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe
Confidence            344455666555444444558999999764     44455667889999876432222      1111 22345689999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 041916           70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRK  133 (359)
Q Consensus        70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~  133 (359)
                      ++|+++++....+.|.+||+..+.....+.......++++|.|+++.| ++.+.++.|..+++..
T Consensus       235 ~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         235 EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999998888889999999998888777777666678999999999755 5556778888888753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=3.8e-05  Score=63.24  Aligned_cols=193  Identities=8%  Similarity=-0.022  Sum_probs=102.9

Q ss_pred             eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-C-----CeEEEEECCCCeEEEEEe------cCCCCeEEEEE
Q 041916            2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-F-----GQLRYQDVTMGEIVGNFR------TGLGRTDVMRV   68 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~------~~~~~v~~~~~   68 (359)
                      |+++|..|.....|..+.+. ...+|||||+.||.... +     ..|.+++..++.......      ..........|
T Consensus        23 l~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~  102 (281)
T d1k32a2          23 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGF  102 (281)
T ss_dssp             EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEE
T ss_pred             EEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccccccc
Confidence            56678455555667766666 89999999998886542 2     248888888776543211      11234567899


Q ss_pred             cCCCCEEEEEeCC------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----------eEEEEEc
Q 041916           69 NPFNGVVSLGHSG------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----------KIKIWDL  131 (359)
Q Consensus        69 sp~~~~l~sg~~d------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----------~i~iwd~  131 (359)
                      +|+|+.|+.....      ..+...+...+....   .+.+....+.+.+.+..++....+.           ....+..
T Consensus       103 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (281)
T d1k32a2         103 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  179 (281)
T ss_dssp             CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             CCCCCEEEEEEccCCCccceeeeeecCCCceeEE---ecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeec
Confidence            9999988875432      234455554433221   1223333333333333333332211           1122222


Q ss_pred             CCceeeEec--cCCceeEEEcCCceEEEE-cC--CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          132 RKYEVLQTL--PGHAKTLDFSQKGLLAVG-TG--SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       132 ~~~~~~~~~--~~~i~~~~~s~~gl~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      .........  ........++++.++... .+  ..|.++|+...  ....+..+.     ......|+|||+.|+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~lt~~~-----~~~~~~~SpDG~~I~f~  250 (281)
T d1k32a2         180 NSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-----DYYPRHLNTDGRRILFS  250 (281)
T ss_dssp             ETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSC--SCEECCCCC-----SSCEEEEEESSSCEEEE
T ss_pred             cccceeeccCCccccceeeeeccccceecccccccceEEEeCCCC--ceEEeecCC-----CcccccCcCCCCEEEEE
Confidence            222222222  334566667777744443 22  46888886554  223333221     12334689999987663

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.27  E-value=0.00073  Score=56.26  Aligned_cols=189  Identities=8%  Similarity=-0.088  Sum_probs=119.1

Q ss_pred             EEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916           22 LKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC  100 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~  100 (359)
                      -+..|++....|.-. -..+.|..||..+++.. .+. ....+.++++.++|.++++ +.+ -|.++|+.+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            667888855444443 35789999999988643 333 3456889999999877765 455 488999998864332221


Q ss_pred             ----cCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEE-EcCCcEEEEc
Q 041916          101 ----HQGPVSALAFHPNGHLMATSGK----ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAV-GTGSFVQILG  167 (359)
Q Consensus       101 ----h~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~-~~d~~i~i~d  167 (359)
                          ....++++.+.|+|++.++...    .+.-.+|.+..++.....  -...+.++|++++  ++.+ +..+.|..|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence                1124789999999998766542    234566766666554444  2345889999999  4444 4567888887


Q ss_pred             CCCCCCc----cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916          168 DFSGSHN----YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP  215 (359)
Q Consensus       168 ~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~  215 (359)
                      +......    ...+..... .......+++..+|.+.++....|.+..|.+
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             ecccccccccceEEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            5432111    111111111 2235778888888887776666665555553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.4e-06  Score=76.99  Aligned_cols=140  Identities=9%  Similarity=-0.019  Sum_probs=92.6

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEecc---CCCeEEEEEcCCCCEEEEEe---------CCCeEEEEEcCC
Q 041916           66 MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH---QGPVSALAFHPNGHLMATSG---------KECKIKIWDLRK  133 (359)
Q Consensus        66 ~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~l~~~~---------~d~~i~iwd~~~  133 (359)
                      ..|.+++.++. -..+|.|.+||+.+++....+...   .-.+....||||+++++...         ..+.+.+||+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            46888877654 356788999999888764444432   23567889999999988764         356899999998


Q ss_pred             ceeeEec-----cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceee-cccC-----CC--------CcceEEEE
Q 041916          134 YEVLQTL-----PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYM-GHSM-----VK--------GYQIGKVS  193 (359)
Q Consensus       134 ~~~~~~~-----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----~~--------~~~v~~~~  193 (359)
                      +......     .+.+....|||+| .++-..++.|.+.+...+. ..+... +...     ..        ...-.++-
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~-~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCc-eEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            7653332     2345678999999 6565668899999865542 222211 1100     00        01124678


Q ss_pred             EeeCCCEEEEEcCC
Q 041916          194 FRPYEDVLGIGHSM  207 (359)
Q Consensus       194 ~~p~~~~l~~~~~d  207 (359)
                      |||||++|+....|
T Consensus       180 WSPDgk~iaf~~~D  193 (465)
T d1xfda1         180 WSPDGTRLAYAAIN  193 (465)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCeEEEEEec
Confidence            99999999987543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=0.00011  Score=60.36  Aligned_cols=127  Identities=12%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             EEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCCcceE
Q 041916           25 QFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-G-----GTVTMWKPTTAAPLI   96 (359)
Q Consensus        25 ~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-d-----g~v~lwd~~~~~~~~   96 (359)
                      ..+||  |+.+|..+ +|.|.+.|+.+++. ..+..+.+.+...+|||||+.||.... +     +.|.+++..++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  98888765 56899999998875 456667778899999999998886532 2     247777777665432


Q ss_pred             EEe------ccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCceeeEeccCCceeEEEcCCc
Q 041916           97 KML------CHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRKYEVLQTLPGHAKTLDFSQKG  153 (359)
Q Consensus        97 ~~~------~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g  153 (359)
                      ...      ........++|+|+|+.|+.....      ..+...+...+.......+....+.+.+.+
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGR  151 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCC
Confidence            211      122345678999999998876432      235556666555443333333333333333

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=0.0083  Score=54.59  Aligned_cols=175  Identities=10%  Similarity=0.020  Sum_probs=104.7

Q ss_pred             EEEEEecCCCEEEEEec----------------CCeEEEEECCCCeEEEEEecCCCCeE---------EEEEcCCCC---
Q 041916           22 LKLQFLRNHFLLASINK----------------FGQLRYQDVTMGEIVGNFRTGLGRTD---------VMRVNPFNG---   73 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~sp~~~---   73 (359)
                      ...++.+...+++.+..                ...|.-.|+.+|+.+..++.....+.         ......++.   
T Consensus       238 ~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~  317 (571)
T d2ad6a1         238 GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP  317 (571)
T ss_dssp             SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred             cccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCcccc
Confidence            45677777766665543                35788899999999988875322221         122222342   


Q ss_pred             EEEEEeCCCeEEEEeCCCCcceEEEeccC-------------------------------------CCe--EEEEEcCCC
Q 041916           74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-------------------------------------GPV--SALAFHPNG  114 (359)
Q Consensus        74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-------------------------------------~~v--~~i~~~~~~  114 (359)
                      .++.++.+|.+.++|..+++++.......                                     +..  ...+++|+.
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~  397 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             ceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCC
Confidence            56778899999999999988764322100                                     000  125677777


Q ss_pred             CEEEEEeCC-------------------------------------CeEEEEEcCCceeeEec--cCCc-eeEEEcCCc-
Q 041916          115 HLMATSGKE-------------------------------------CKIKIWDLRKYEVLQTL--PGHA-KTLDFSQKG-  153 (359)
Q Consensus       115 ~~l~~~~~d-------------------------------------~~i~iwd~~~~~~~~~~--~~~i-~~~~~s~~g-  153 (359)
                      .+++....+                                     |.|.-+|+.+++.+.+.  ..+. ........| 
T Consensus       398 ~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Taggl  477 (571)
T d2ad6a1         398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL  477 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred             ceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCE
Confidence            766654322                                     46778888888877666  2222 222223455 


Q ss_pred             eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE
Q 041916          154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV  200 (359)
Q Consensus       154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  200 (359)
                      +++++.|+.++.+|..++. .+-.+.........+   +.|..+|+.
T Consensus       478 Vf~G~~dg~l~A~Da~tGe-~lW~~~l~~~~~a~P---~ty~~dGkq  520 (571)
T d2ad6a1         478 VWYATLDGYLKALDNKDGK-ELWNFKMPSGGIGSP---MTYSFKGKQ  520 (571)
T ss_dssp             EEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             EEEECCCCeEEEEECCCCc-EEEEEECCCCceecc---eEEEECCEE
Confidence            6677889999999988884 443333221102222   556667753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.53  E-value=0.017  Score=49.62  Aligned_cols=147  Identities=11%  Similarity=0.070  Sum_probs=96.4

Q ss_pred             EEEEEec---CCCEEEEEe-cCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcC--CCCEEEEEeCC-------------
Q 041916           22 LKLQFLR---NHFLLASIN-KFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNP--FNGVVSLGHSG-------------   81 (359)
Q Consensus        22 ~~l~~s~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~sg~~d-------------   81 (359)
                      -.++|..   ||++|++.. .++.|.+.|+.+.++...+... ...++.++..+  ...++++++.+             
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            3566654   788887665 5889999999999986655432 34567777755  44677776653             


Q ss_pred             -----CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---------------eEEEE------------
Q 041916           82 -----GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---------------KIKIW------------  129 (359)
Q Consensus        82 -----g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---------------~i~iw------------  129 (359)
                           +.+.++|..+.+....+.. .+....+.++|+|+++++.+.+.               .+.++            
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 2367788888776655543 23456799999999988877431               13333            


Q ss_pred             -----------EcCCc---eeeEec--cCCceeEEEcCCc-eEE-EE-cCCcEEEEcCC
Q 041916          130 -----------DLRKY---EVLQTL--PGHAKTLDFSQKG-LLA-VG-TGSFVQILGDF  169 (359)
Q Consensus       130 -----------d~~~~---~~~~~~--~~~i~~~~~s~~g-l~~-~~-~d~~i~i~d~~  169 (359)
                                 |.+..   ..+..+  +.....+.++||| ++. ++ .+.++.|+|+.
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                       33321   111122  3456889999999 333 33 57899999964

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.50  E-value=0.0058  Score=55.53  Aligned_cols=174  Identities=11%  Similarity=0.108  Sum_probs=105.2

Q ss_pred             EEEEEecCCCEEEEEec-------------------CCeEEEEECCCCeEEEEEecCCCCeE---------EEEEcCCC-
Q 041916           22 LKLQFLRNHFLLASINK-------------------FGQLRYQDVTMGEIVGNFRTGLGRTD---------VMRVNPFN-   72 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~sp~~-   72 (359)
                      ..+++.|...+++.+..                   ...|.-.|+.+|+....++.....+.         -+....++ 
T Consensus       233 ~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~  312 (560)
T d1kv9a2         233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (560)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCc
Confidence            55777887766654321                   35678889999998887764322221         11222233 


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCcceEEEeccC----------------------------------C--CeEEEEEcCCC
Q 041916           73 --GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ----------------------------------G--PVSALAFHPNG  114 (359)
Q Consensus        73 --~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~----------------------------------~--~v~~i~~~~~~  114 (359)
                        ..++.++.+|.+.++|..+++++.....-.                                  +  .-...+++|+.
T Consensus       313 ~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~  392 (560)
T d1kv9a2         313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (560)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             eeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCC
Confidence              357778899999999999998765432110                                  0  00245677777


Q ss_pred             CEEEEEeC------------------------------------CCeEEEEEcCCceeeEec--cCCceeEEE-cCCc-e
Q 041916          115 HLMATSGK------------------------------------ECKIKIWDLRKYEVLQTL--PGHAKTLDF-SQKG-L  154 (359)
Q Consensus       115 ~~l~~~~~------------------------------------d~~i~iwd~~~~~~~~~~--~~~i~~~~~-s~~g-l  154 (359)
                      .+++....                                    .|.|.-||+.+++.+..+  ..+..+-.+ ...| +
T Consensus       393 ~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglV  472 (560)
T d1kv9a2         393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV  472 (560)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred             CeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEE
Confidence            77665432                                    256888999999888776  333322222 2344 6


Q ss_pred             EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      ++++.||.++.||..++ +.+-.+.........+   +.|..+|+
T Consensus       473 F~G~~dg~l~A~Da~tG-e~LW~~~l~~~~~~~P---~ty~~dGk  513 (560)
T d1kv9a2         473 FQGTAAGQMHAYSADKG-EALWQFEAQSGIVAAP---MTFELAGR  513 (560)
T ss_dssp             EEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             EEECCCCcEEEEECCCC-cEeEEEECCCCccccC---EEEEECCE
Confidence            67788999999998888 4443333322112222   45566775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.27  E-value=0.044  Score=46.93  Aligned_cols=126  Identities=12%  Similarity=0.076  Sum_probs=84.3

Q ss_pred             EEEEecCCeEEEEECCCCeEEEEEecC---------------------------------------CCCeE--EEEEcC-
Q 041916           33 LASINKFGQLRYQDVTMGEIVGNFRTG---------------------------------------LGRTD--VMRVNP-   70 (359)
Q Consensus        33 l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------------~~~v~--~~~~sp-   70 (359)
                      +.||+..|.|+|+-+.+++.+..+...                                       .+..+  .+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567888999999999988877764310                                       01111  333332 


Q ss_pred             --CCCEEEEEe-CCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC--CCCEEEEEeCCC------------------eE
Q 041916           71 --FNGVVSLGH-SGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP--NGHLMATSGKEC------------------KI  126 (359)
Q Consensus        71 --~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~--~~~~l~~~~~d~------------------~i  126 (359)
                        ||++|++.. .++.|-+.|+.+.+....+. .....+..+...+  ...|++..+.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              567766655 77889999999988755443 2334567677654  455677666532                  36


Q ss_pred             EEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE
Q 041916          127 KIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG  158 (359)
Q Consensus       127 ~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~  158 (359)
                      .++|..+.+...++  .+....+.++|+|  +++.+
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            78899888776666  5677899999999  44444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.038  Score=44.55  Aligned_cols=174  Identities=9%  Similarity=0.003  Sum_probs=105.1

Q ss_pred             CeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcce
Q 041916           20 AVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTTAAPL   95 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~~~~~   95 (359)
                      .+.++++..-+..|+ +-...+.|.+.++........+......+..+++.|...+++-...   .+.|.--++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            458899987565555 4445779999998765543334444467899999998776665432   223544556543333


Q ss_pred             EEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEecc--CCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916           96 IKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTLP--GHAKTLDFSQKGLLAVG-TGSFVQILGDFSG  171 (359)
Q Consensus        96 ~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~--~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~  171 (359)
                      ......-....+|++++.++.|+.+. ..+.|...|+........+.  ..+.+|++..+.++... ..+.|...|..++
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCC
Confidence            33323334568999999888876664 56789999997654332232  34567877643355554 4578888886655


Q ss_pred             CCccceeecccCCCCcceEEEEEeeC
Q 041916          172 SHNYSRYMGHSMVKGYQIGKVSFRPY  197 (359)
Q Consensus       172 ~~~~~~~~~~~~~~~~~v~~~~~~p~  197 (359)
                       .....+..+   ......+++..++
T Consensus       240 -~~~~~~~~~---~~~~~~gi~v~~~  261 (263)
T d1npea_         240 -KEMDTFHPH---KQTRLYGITIALS  261 (263)
T ss_dssp             -EEEEEECCS---SCCCCCCEEEECS
T ss_pred             -ccceEECCC---CCCCcceEEEeCC
Confidence             333333322   1224445555543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.08  E-value=0.0071  Score=51.12  Aligned_cols=182  Identities=14%  Similarity=0.085  Sum_probs=99.0

Q ss_pred             CeEEEEEecCCCEEEEEec------------CCeEEEEECCCCeE-EEEE--ecCC-----CCeEEEEE--cCCCC-EEE
Q 041916           20 AVLKLQFLRNHFLLASINK------------FGQLRYQDVTMGEI-VGNF--RTGL-----GRTDVMRV--NPFNG-VVS   76 (359)
Q Consensus        20 ~~~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~-~~~~--~~~~-----~~v~~~~~--sp~~~-~l~   76 (359)
                      ++-.|+..|+|..+++++.            .|.|.++|+.+... ...+  .+..     -..+.+..  .++|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4567888999977766542            48999999876532 2222  2110     12345544  44554 344


Q ss_pred             EE---eCCCeEEEEeCCCCcceEE----Ee-ccCCCeEEEEEcCCCCEEEEEe-----------------CCCeEEEEEc
Q 041916           77 LG---HSGGTVTMWKPTTAAPLIK----ML-CHQGPVSALAFHPNGHLMATSG-----------------KECKIKIWDL  131 (359)
Q Consensus        77 sg---~~dg~v~lwd~~~~~~~~~----~~-~h~~~v~~i~~~~~~~~l~~~~-----------------~d~~i~iwd~  131 (359)
                      +.   ....+|.+|++........    +. ......++|++..+|.+++|-.                 .-+.|..||.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            33   2456788888764433222    21 1123468999999998887731                 1123444444


Q ss_pred             CCceeeEeccCCceeEEEcCCc--eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEE
Q 041916          132 RKYEVLQTLPGHAKTLDFSQKG--LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIG  204 (359)
Q Consensus       132 ~~~~~~~~~~~~i~~~~~s~~g--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~  204 (359)
                      ...+.+..--...+.|+++|++  ++++ +..+.|.+|++... ...........  ....-.+.+.+ +|.+.+++
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~-~~l~~~~~~~l--~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVLSF--DTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEEEC--SSEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC-cccceEEEecC--CCCCCccEEecCCCEEEEEE
Confidence            3322222212457899999998  4333 45689999986543 22222111111  12455677765 34444443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.08  E-value=0.037  Score=50.16  Aligned_cols=156  Identities=8%  Similarity=0.036  Sum_probs=92.2

Q ss_pred             CeEEEEECCCCeEEEEEecCCCC---------eEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceEEEeccCC----
Q 041916           40 GQLRYQDVTMGEIVGNFRTGLGR---------TDVMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG----  103 (359)
Q Consensus        40 g~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~----  103 (359)
                      ..|.-.|+.+|+....++.....         ........++   ..++.++.+|.+.++|..+++.+........    
T Consensus       283 ~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~  362 (573)
T d1kb0a2         283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (573)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             ceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccc
Confidence            36778888999888776642221         1222222233   3577788999999999999987654431110    


Q ss_pred             -------------------------------CeEEEEEcCCCCEEEEEeCC-----------------------------
Q 041916          104 -------------------------------PVSALAFHPNGHLMATSGKE-----------------------------  123 (359)
Q Consensus       104 -------------------------------~v~~i~~~~~~~~l~~~~~d-----------------------------  123 (359)
                                                     .-..++++|+..+++....+                             
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  442 (573)
T d1kb0a2         363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (573)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence                                           01134677777666654222                             


Q ss_pred             --------------CeEEEEEcCCceeeEecc--CCceeEEEc-CCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916          124 --------------CKIKIWDLRKYEVLQTLP--GHAKTLDFS-QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK  185 (359)
Q Consensus       124 --------------~~i~iwd~~~~~~~~~~~--~~i~~~~~s-~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  185 (359)
                                    |.|.-||+.+++.+-.++  .+...-..+ ..| +++++.||.++.||..++ +.+-.+.......
T Consensus       443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~  521 (573)
T d1kb0a2         443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVV  521 (573)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCC
T ss_pred             ccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCC-cEeEEEECCCCcc
Confidence                          357778888888777662  222211222 334 667778999999998888 4444443322212


Q ss_pred             CcceEEEEEeeCCC
Q 041916          186 GYQIGKVSFRPYED  199 (359)
Q Consensus       186 ~~~v~~~~~~p~~~  199 (359)
                      ..+   +.|..+|+
T Consensus       522 ~~P---~ty~~~Gk  532 (573)
T d1kb0a2         522 AAP---STYMVDGR  532 (573)
T ss_dssp             SCC---EEEEETTE
T ss_pred             ccC---EEEEECCE
Confidence            223   45566775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.03  E-value=0.033  Score=50.46  Aligned_cols=151  Identities=16%  Similarity=0.129  Sum_probs=93.8

Q ss_pred             eEEEe-CCCcEEEEeccCC-C---------eEEEEEecCCC---EEEEEecCCeEEEEECCCCeEEEEEecCC-------
Q 041916            2 PYIYN-RDGTELHCLKEHG-A---------VLKLQFLRNHF---LLASINKFGQLRYQDVTMGEIVGNFRTGL-------   60 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~-~---------~~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------   60 (359)
                      |.-.| .+|+.+-.++.+. +         +.......++.   .++.++.+|.+.++|..+|+.+.......       
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            34457 7888887766421 1         12223333553   56778899999999999999875432110       


Q ss_pred             ------------------------------CC--eEEEEEcCCCCEEEEEeCC---------------------------
Q 041916           61 ------------------------------GR--TDVMRVNPFNGVVSLGHSG---------------------------   81 (359)
Q Consensus        61 ------------------------------~~--v~~~~~sp~~~~l~sg~~d---------------------------   81 (359)
                                                    +.  -...+++|+..+++....+                           
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                                          00  0125677776666554322                           


Q ss_pred             ----------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc--eeE
Q 041916           82 ----------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA--KTL  147 (359)
Q Consensus        82 ----------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i--~~~  147 (359)
                                |.|.-+|+.+++.+.....- .+..+-...-.+.++++++.|+.++.+|.++|+.+.++  .+.+  .-+
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~  512 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPM  512 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             ccCCcccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecce
Confidence                      46777888888877665421 11111111224668888999999999999999999887  3333  336


Q ss_pred             EEcCCc
Q 041916          148 DFSQKG  153 (359)
Q Consensus       148 ~~s~~g  153 (359)
                      .|..+|
T Consensus       513 ty~~dG  518 (571)
T d2ad6a1         513 TYSFKG  518 (571)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            677788

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.042  Score=46.71  Aligned_cols=169  Identities=10%  Similarity=0.009  Sum_probs=101.7

Q ss_pred             EEEEEecCCCEEEEEecCCeEEEEECCC-----------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916           22 LKLQFLRNHFLLASINKFGQLRYQDVTM-----------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT   90 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~   90 (359)
                      .-++.++...+|+.|+.+ .+.|..+..           ........  ...|..++|+.+  .|+.. .++.+..++..
T Consensus        40 ~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          40 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            778899887788888877 466776421           11111221  236888999755  45444 45568888877


Q ss_pred             CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--------eccCCceeEEEcCCc--eEEEEcC
Q 041916           91 TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--------TLPGHAKTLDFSQKG--LLAVGTG  160 (359)
Q Consensus        91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------~~~~~i~~~~~s~~g--l~~~~~d  160 (359)
                      +-........-..++.++.++|.  .++....++.+.++++..+....        .+.+.+.+++|++.|  ++++ .+
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~-~g  190 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW-RN  190 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE-ET
T ss_pred             ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe-CC
Confidence            65544444444567888888774  57777788999999998875322        124567788888877  4443 33


Q ss_pred             CcEEEEc-CCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916          161 SFVQILG-DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG  204 (359)
Q Consensus       161 ~~i~i~d-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  204 (359)
                      +...+-. +...    ..+..... ....|.+|.|..+..++++-
T Consensus       191 ~~~q~k~~i~~~----~~~~~p~~-~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         191 GEMEKQFEFSLP----SELEELPV-EEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TEEEEEEEECCC----HHHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred             CceeeccCCCCc----cccCCCcC-CCcceeEEEEecCceEEEEE
Confidence            3333321 1111    11111100 12268899999877777654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.98  E-value=0.043  Score=49.71  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             CEEEEEecCCeEEEEECCCCeEEEEEecCCC-----------------------------------CeEEEEEcCCCCEE
Q 041916           31 FLLASINKFGQLRYQDVTMGEIVGNFRTGLG-----------------------------------RTDVMRVNPFNGVV   75 (359)
Q Consensus        31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------------~v~~~~~sp~~~~l   75 (359)
                      ..++.++.+|.+.++|..+|+.+........                                   .-..++++|+..++
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            4577788899999999999998765432110                                   01134677776665


Q ss_pred             EEEeCC-------------------------------------------CeEEEEeCCCCcceEEEeccCCCeEEEEEcC
Q 041916           76 SLGHSG-------------------------------------------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHP  112 (359)
Q Consensus        76 ~sg~~d-------------------------------------------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~  112 (359)
                      +....+                                           |.|.-||+.+++.+..+.... +..+-..+-
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst  486 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT  486 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEE
Confidence            553222                                           356677777777766654321 211112223


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc--eeEEEcCCc
Q 041916          113 NGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA--KTLDFSQKG  153 (359)
Q Consensus       113 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i--~~~~~s~~g  153 (359)
                      .|.++++|+.|+.++.+|..+|+.+.++  .+.+  .-+.|..+|
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  531 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG  531 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            6778888999999999999999999887  3322  225566677

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.88  E-value=0.11  Score=47.01  Aligned_cols=174  Identities=10%  Similarity=-0.007  Sum_probs=102.1

Q ss_pred             EEEEEecCCCEEEEEec----------------CCeEEEEECCCCeEEEEEecCCC---------CeEEEEE-cCCC---
Q 041916           22 LKLQFLRNHFLLASINK----------------FGQLRYQDVTMGEIVGNFRTGLG---------RTDVMRV-NPFN---   72 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~~~----------------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~-sp~~---   72 (359)
                      ..+++.+...+++.+..                ..+|.-.|+.+|+.+..++....         .+..+.. ..+|   
T Consensus       244 ~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~  323 (596)
T d1w6sa_         244 GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR  323 (596)
T ss_dssp             SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE
T ss_pred             cccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccc
Confidence            45677777666665532                34688899999999888774221         1111221 2344   


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcceEEEeccC-------------CC--------------------------eEEEEEcCC
Q 041916           73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-------------GP--------------------------VSALAFHPN  113 (359)
Q Consensus        73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~--------------------------v~~i~~~~~  113 (359)
                      ..++.+..+|.+.++|-.+++++.......             .+                          -...+++|+
T Consensus       324 ~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~  403 (596)
T d1w6sa_         324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (596)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             cceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCC
Confidence            367778899999999999888764322100             00                          013456666


Q ss_pred             CCEEEEEeC---------------------------------------CCeEEEEEcCCceeeEec--cCCceeEEEc-C
Q 041916          114 GHLMATSGK---------------------------------------ECKIKIWDLRKYEVLQTL--PGHAKTLDFS-Q  151 (359)
Q Consensus       114 ~~~l~~~~~---------------------------------------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s-~  151 (359)
                      ..+++....                                       -|.|.-||+.+++.+...  ..+..+-.++ .
T Consensus       404 ~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTa  483 (596)
T d1w6sa_         404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA  483 (596)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET
T ss_pred             CceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEec
Confidence            555554321                                       146788888888876655  2222221222 3


Q ss_pred             Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      .| +++++.||.++.||..++ +.+-.+.........+   +.|..+|+
T Consensus       484 gglVF~G~~Dg~l~A~Da~TG-e~LW~~~~~~~~~a~P---~tY~~dGk  528 (596)
T d1w6sa_         484 GDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYP---MTYTHKGT  528 (596)
T ss_dssp             TTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             CCEEEEECCCCeEEEEECCCC-cEeeEEECCCCcccCC---eEEEECCE
Confidence            34 667778999999998888 4444443332212233   44666775

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.81  E-value=0.035  Score=50.17  Aligned_cols=151  Identities=16%  Similarity=0.184  Sum_probs=93.2

Q ss_pred             eEEEe-CCCcEEEEecc--CCC--------eEEEEEecCC---CEEEEEecCCeEEEEECCCCeEEEEEecCCC------
Q 041916            2 PYIYN-RDGTELHCLKE--HGA--------VLKLQFLRNH---FLLASINKFGQLRYQDVTMGEIVGNFRTGLG------   61 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~--h~~--------~~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------   61 (359)
                      |.-.| .+|+.+..++.  |.-        +.-+....++   ..++.++.+|.+.++|..+|+++........      
T Consensus       272 ivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~  351 (560)
T d1kv9a2         272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV  351 (560)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred             eEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccccc
Confidence            33456 77887655543  211        1112233344   3577788899999999999998765432110      


Q ss_pred             ------------------------------CeEEEEEcCCCCEEEEEeC-------------------------------
Q 041916           62 ------------------------------RTDVMRVNPFNGVVSLGHS-------------------------------   80 (359)
Q Consensus        62 ------------------------------~v~~~~~sp~~~~l~sg~~-------------------------------   80 (359)
                                                    .-...+++|+..+++....                               
T Consensus       352 d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (560)
T d1kv9a2         352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (560)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             ChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCC
Confidence                                          0113456676666554332                               


Q ss_pred             -----CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc--eeEEEcC
Q 041916           81 -----GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA--KTLDFSQ  151 (359)
Q Consensus        81 -----dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i--~~~~~s~  151 (359)
                           .|.|.-||+.+++.+..+.. ..+..+-.+.-.|.++++++.||.++.+|..+|+.+.++  ...+  .-+.+..
T Consensus       432 p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~  510 (560)
T d1kv9a2         432 PAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL  510 (560)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEE
Confidence                 25678889888887776542 222222222335678888999999999999999999888  2222  3355666


Q ss_pred             Cc
Q 041916          152 KG  153 (359)
Q Consensus       152 ~g  153 (359)
                      +|
T Consensus       511 dG  512 (560)
T d1kv9a2         511 AG  512 (560)
T ss_dssp             TT
T ss_pred             CC
Confidence            77

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.76  E-value=0.15  Score=46.14  Aligned_cols=72  Identities=7%  Similarity=0.022  Sum_probs=43.9

Q ss_pred             CeEEEEEcCCceeeEec--cCCceeEEEcC-Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916          124 CKIKIWDLRKYEVLQTL--PGHAKTLDFSQ-KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED  199 (359)
Q Consensus       124 ~~i~iwd~~~~~~~~~~--~~~i~~~~~s~-~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  199 (359)
                      |.|.-+|+.+++.+..+  ..++.+-.++. .| +++++.||.++.||..++ +.+-.+.........+   +.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P---~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPP---ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCC-cEeEEEECCCCccccC---EEEEECCE
Confidence            56888888888887766  23332212223 34 667778999999998888 4444443332212222   56677775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.095  Score=42.05  Aligned_cols=149  Identities=11%  Similarity=0.000  Sum_probs=96.7

Q ss_pred             EEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEEe
Q 041916           22 LKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-LGHSGGTVTMWKPTTAAPLIKML   99 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-sg~~dg~v~lwd~~~~~~~~~~~   99 (359)
                      .+++|.+..+.|+.+ ..++.|...++..+.....+......+.++++..-+..|+ +-...+.|.+.++........+.
T Consensus        39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~  118 (263)
T d1npea_          39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD  118 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec
Confidence            578888877766655 4567899999876655444544446788999987665555 44567799999987655433333


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEec-c--CCceeEEEcCCc--eEEEE-cCCcEEEEcCCC
Q 041916          100 CHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQTL-P--GHAKTLDFSQKG--LLAVG-TGSFVQILGDFS  170 (359)
Q Consensus       100 ~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~-~--~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~  170 (359)
                      ........++++|...+|+.....   ..|..-++......... .  ..+..|++++.+  ++.+. ..+.|...++..
T Consensus       119 ~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence            334568899999977777655432   23544566543322222 1  345789998766  55554 457888888643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.11  Score=41.65  Aligned_cols=169  Identities=11%  Similarity=0.008  Sum_probs=102.9

Q ss_pred             eEEEeCCCcE-EEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEE
Q 041916            2 PYIYNRDGTE-LHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGE----IVGNFRTGLGRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd~~g~~-~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l   75 (359)
                      |+.++.++.. ...+.+...+.+++|.+....|+-.. .++.|.-.++....    ....+......+.+|++.+.+..|
T Consensus        12 I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~l   91 (266)
T d1ijqa1          12 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI   91 (266)
T ss_dssp             EEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEE
T ss_pred             EEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceE
Confidence            4445533332 22334445568899999877776654 45677777665321    112233334567789998766554


Q ss_pred             EE-EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEecc---CCceeEEE
Q 041916           76 SL-GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLP---GHAKTLDF  149 (359)
Q Consensus        76 ~s-g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~---~~i~~~~~  149 (359)
                      +. -...+.|.+.++........+........+++++|...+|+...  ..+.|...++..........   ..+..+++
T Consensus        92 Y~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~i  171 (266)
T d1ijqa1          92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL  171 (266)
T ss_dssp             EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred             EEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEe
Confidence            44 45667899999886554444555556678999999766666554  34567777776543332222   34688999


Q ss_pred             cCCc--eEEEE-cCCcEEEEcCCC
Q 041916          150 SQKG--LLAVG-TGSFVQILGDFS  170 (359)
Q Consensus       150 s~~g--l~~~~-~d~~i~i~d~~~  170 (359)
                      ++.+  ++.+. ..+.|...++..
T Consensus       172 D~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         172 DLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eccccEEEEecCCcCEEEEEECCC
Confidence            9876  55554 457888888643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.12  Score=41.61  Aligned_cols=151  Identities=11%  Similarity=0.004  Sum_probs=97.0

Q ss_pred             eEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEE
Q 041916           21 VLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIK   97 (359)
Q Consensus        21 ~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~   97 (359)
                      +.+|++.+.+..|+.+ ...+.|.+.++........+.........++.+|...+|+-..  ..+.|.-.++........
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l  158 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  158 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc
Confidence            4778888766555544 4567899999986665555666666789999998665555443  345677777654333322


Q ss_pred             EeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEec--c---CCceeEEEcCCceEEEE-cCCcEEEEcCCC
Q 041916           98 MLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTL--P---GHAKTLDFSQKGLLAVG-TGSFVQILGDFS  170 (359)
Q Consensus        98 ~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~--~---~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~  170 (359)
                      ....-...+++++++.+..|+.+ +..+.|...|+.........  .   ..+.+|++..+.++.+. .++.|...+..+
T Consensus       159 ~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             cccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence            22333557899999988877766 45678999998754332222  1   23567777754444444 457777777555


Q ss_pred             C
Q 041916          171 G  171 (359)
Q Consensus       171 ~  171 (359)
                      +
T Consensus       239 g  239 (266)
T d1ijqa1         239 G  239 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.041  Score=49.92  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc--eeEEEcCCc
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA--KTLDFSQKG  153 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i--~~~~~s~~g  153 (359)
                      |.|.-+|+.+++.+.....+ .++.+-..+-.|.++++|+.||.++.+|..+|+.+.++  ...+  .-+.+..+|
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G  540 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence            56888888888887776533 22222223346778888999999999999999999888  2222  336777788

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.23  E-value=0.11  Score=43.83  Aligned_cols=110  Identities=9%  Similarity=0.002  Sum_probs=72.2

Q ss_pred             EEecCCCEEEEEecC-----C------eEEEEECCCCeEE--EEE-ecCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEeC
Q 041916           25 QFLRNHFLLASINKF-----G------QLRYQDVTMGEIV--GNF-RTGLGRTDVMRVNPFNGVVSLGHSG-GTVTMWKP   89 (359)
Q Consensus        25 ~~s~~~~~l~s~~~d-----g------~i~iwd~~~~~~~--~~~-~~~~~~v~~~~~sp~~~~l~sg~~d-g~v~lwd~   89 (359)
                      ....+|++++.|+.+     +      .+.+||+.++.-.  ... ..+.......++.+++.+++.|+.+ ..+.+||+
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            334578888888742     1      3779999887532  222 2233345567889999999988755 57999998


Q ss_pred             CCCcceE--EEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCce
Q 041916           90 TTAAPLI--KMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRKYE  135 (359)
Q Consensus        90 ~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~~~  135 (359)
                      .+..-..  .+.. ...-.+.+..+||.+++.++.+      ..+.+||..+.+
T Consensus       106 ~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         106 SSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             GGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            7654221  1111 1123456778899999988753      368999998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.21  E-value=0.17  Score=40.96  Aligned_cols=120  Identities=13%  Similarity=0.096  Sum_probs=88.4

Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEc
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGT  159 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~  159 (359)
                      ..|.+.|+..+..+..-.   -.-.+.-.+|..+.||.-+ ..++.+||+.+.+.+..+  +.+|.--.|-.+..++.-.
T Consensus        45 ~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT  120 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT  120 (327)
T ss_dssp             EEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC
T ss_pred             ceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc
Confidence            468888987665433221   1223455789999888877 468999999998887766  6788888888887666666


Q ss_pred             CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      +..|+-|++.....+...+..|..-.+..|..-..++++++++..+
T Consensus       121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence            8899999986555667777776544567898999999999887543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.88  E-value=0.076  Score=48.24  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc--eeEEEcCCc
Q 041916           82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA--KTLDFSQKG  153 (359)
Q Consensus        82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i--~~~~~s~~g  153 (359)
                      |.|.-||+.+++.+..... ..++.+-.++-.|.+++.|+.||.++.+|..+|+.+.++  ...+  .-+.|.-+|
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECC
Confidence            5677888888877665431 222222222335778888999999999999999999888  2222  345666677

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.75  E-value=0.51  Score=40.49  Aligned_cols=189  Identities=6%  Similarity=-0.069  Sum_probs=101.2

Q ss_pred             EEEEEecCCCEEEEE-ec----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---------------
Q 041916           22 LKLQFLRNHFLLASI-NK----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG---------------   81 (359)
Q Consensus        22 ~~l~~s~~~~~l~s~-~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d---------------   81 (359)
                      ..+++||+++++|.+ +.    ...|+++|+.+|+.+...-. ......++|++|+..|+....+               
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            567889999988753 22    34799999999987642211 1123568999999877654322               


Q ss_pred             -CeEEEEeCCCCcce--EEEeccC--CCeEEEEEcCCCCEEEEEeC---CCe--EEEEEcCCcee--------eEec---
Q 041916           82 -GTVTMWKPTTAAPL--IKMLCHQ--GPVSALAFHPNGHLMATSGK---ECK--IKIWDLRKYEV--------LQTL---  140 (359)
Q Consensus        82 -g~v~lwd~~~~~~~--~~~~~h~--~~v~~i~~~~~~~~l~~~~~---d~~--i~iwd~~~~~~--------~~~~---  140 (359)
                       ..|.++.+.+...-  ..+....  ..+..+..++++++++....   +..  +.+.|+.....        ...+   
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence             25788888776432  3333322  34667788999999764332   233  44455543211        1111   


Q ss_pred             cCCceeEEEcCCceEEEEc----CCcEEEEcCCCCCCc-cceeecccCCCCcceEEEEEeeCCCEEEEE-cCCCeEEEEE
Q 041916          141 PGHAKTLDFSQKGLLAVGT----GSFVQILGDFSGSHN-YSRYMGHSMVKGYQIGKVSFRPYEDVLGIG-HSMGWSSILV  214 (359)
Q Consensus       141 ~~~i~~~~~s~~gl~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~~~i~~  214 (359)
                      .....-+....+.++..+.    ++.|...++...... ...+..+   +...+..-.++..+.+|+.. ..++...+.+
T Consensus       287 ~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~---~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         287 EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE---HEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC---CSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecc---cCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            1122222222222444432    356666665543221 2233332   11245555556666666655 4666655544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.41  Score=38.71  Aligned_cols=168  Identities=10%  Similarity=0.101  Sum_probs=105.7

Q ss_pred             eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecCC----CCeEEEEEcCCCCEE
Q 041916            2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTGL----GRTDVMRVNPFNGVV   75 (359)
Q Consensus         2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~~~~sp~~~~l   75 (359)
                      +.|+| .+.+.++.+.-...+.--.|-.+. .|+-.. +..|+-|++... .+...+.-|.    ..|.....+++.+.+
T Consensus        85 LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~  162 (327)
T d1utca2          85 LQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWL  162 (327)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEE
T ss_pred             EEEEehhHhhhhceEEcCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEE
Confidence            67888 777777777777777556676543 454444 458999999532 4566666543    356777788888876


Q ss_pred             EEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEe---CCCeEEEEEcCCce---e---
Q 041916           76 SLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSG---KECKIKIWDLRKYE---V---  136 (359)
Q Consensus        76 ~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~---~d~~i~iwd~~~~~---~---  136 (359)
                      +..+       -.|.+.||..... .-+.+.+|.+....+.+.-+   ...++.+.   ..+.+.+.++....   +   
T Consensus       163 ~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~  241 (327)
T d1utca2         163 LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP  241 (327)
T ss_dssp             EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC
T ss_pred             EEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc
Confidence            6543       2477889987643 45567777655444433221   12333332   23678888886521   1   


Q ss_pred             ---eEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916          137 ---LQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS  172 (359)
Q Consensus       137 ---~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~  172 (359)
                         +..+      ..-..++..|+.-  ++..+.-|.|++||+.++.
T Consensus       242 kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         242 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             ceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence               1111      1234677777754  7888899999999998873

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.63  E-value=0.6  Score=40.40  Aligned_cols=56  Identities=11%  Similarity=0.079  Sum_probs=40.6

Q ss_pred             ccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCC
Q 041916           16 KEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--------TGLGRTDVMRVNPF   71 (359)
Q Consensus        16 ~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~sp~   71 (359)
                      .+-..+++|+|.||+.+|++--.+|.|++++..++.......        ...+....|+|+|+
T Consensus        24 ~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          24 SNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            345567999999999988876557999999988775432221        12345788999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.62  E-value=0.5  Score=39.37  Aligned_cols=144  Identities=10%  Similarity=0.163  Sum_probs=84.7

Q ss_pred             EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc------CCCCEEEEEe-C-C--CeEEEEe
Q 041916           22 LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN------PFNGVVSLGH-S-G--GTVTMWK   88 (359)
Q Consensus        22 ~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s------p~~~~l~sg~-~-d--g~v~lwd   88 (359)
                      -++-++|   +..+++.....+-|.+||+. |+.+..+.  .+.++.+..-      ....-|++++ . +  -+|.+|.
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            4444454   45677766777779999985 88887765  3455555432      2222345555 2 2  3577887


Q ss_pred             CCC-CcceEEEecc-------CCCeEEEEE--cCC-CC-EEEEEeCCCeEEEEEcC---Cc----eeeEec--cCCceeE
Q 041916           89 PTT-AAPLIKMLCH-------QGPVSALAF--HPN-GH-LMATSGKECKIKIWDLR---KY----EVLQTL--PGHAKTL  147 (359)
Q Consensus        89 ~~~-~~~~~~~~~h-------~~~v~~i~~--~~~-~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~--~~~i~~~  147 (359)
                      +.. ...+..+...       ...+..+|+  +|. |. ++++...+|.+..|.+.   .+    +.++.+  ...+..|
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGC  185 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGM  185 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceE
Confidence            652 2222222211       123566666  664 54 45666678999888763   22    345555  5567888


Q ss_pred             EEcCCc--eEEEEcCCcEEEEcC
Q 041916          148 DFSQKG--LLAVGTGSFVQILGD  168 (359)
Q Consensus       148 ~~s~~g--l~~~~~d~~i~i~d~  168 (359)
                      .+.+..  |+.+-.+.-|..++.
T Consensus       186 VvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         186 AADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             EEETTTTEEEEEETTTEEEEEES
T ss_pred             EEeCCCCcEEEecCccceEEEEe
Confidence            888875  666666666655654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.23  Score=41.97  Aligned_cols=138  Identities=9%  Similarity=-0.035  Sum_probs=84.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEeCC----------CC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPT----------TA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW  129 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~----------~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iw  129 (359)
                      ...+-++.++...++++|+.++ +.|..+.          .+ ......  .-..|..++|+.+  .++... ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEEe-CCCEEEE
Confidence            4567788888888888888886 5566521          11 111111  1235888999754  555544 4568888


Q ss_pred             EcCCc---eeeEeccCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeec-ccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          130 DLRKY---EVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMG-HSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       130 d~~~~---~~~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                      +....   .....+..++.++.++|..++++..+|.+.++++..+. ......+ +.......+.+++|++.|..++++.
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~-~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS-TKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCc-cccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            77653   33444567789999999988888889999999976652 2111100 0000112467777777776666654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.20  E-value=0.69  Score=38.45  Aligned_cols=167  Identities=10%  Similarity=0.083  Sum_probs=98.6

Q ss_pred             eEEEeCCCcEEEEeccCCCeEEEEEe----cC--CCEEEEEec-C---CeEEEEECCC-CeEEEEEecC-------CCCe
Q 041916            2 PYIYNRDGTELHCLKEHGAVLKLQFL----RN--HFLLASINK-F---GQLRYQDVTM-GEIVGNFRTG-------LGRT   63 (359)
Q Consensus         2 v~iwd~~g~~~~~l~~h~~~~~l~~s----~~--~~~l~s~~~-d---g~i~iwd~~~-~~~~~~~~~~-------~~~v   63 (359)
                      |++||.+|+++..+... .++.+..-    -.  ...|++++. +   .+|.+|.+.. ...+..+...       ...+
T Consensus        52 l~vYdL~G~~l~~~~~G-r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~v  130 (353)
T d1h6la_          52 LAVYSLEGKMLHSYHTG-KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEV  130 (353)
T ss_dssp             CEEEETTCCEEEECCSS-CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSC
T ss_pred             EEEEcCCCcEEEecccC-CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcc
Confidence            68999889999887532 22322221    12  233455542 2   3688888752 3334444322       1235


Q ss_pred             EEEEE--cCC-CC-EEEEEeCCCeEEEEeCC---CCc----ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916           64 DVMRV--NPF-NG-VVSLGHSGGTVTMWKPT---TAA----PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR  132 (359)
Q Consensus        64 ~~~~~--sp~-~~-~l~sg~~dg~v~lwd~~---~~~----~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~  132 (359)
                      ..+|+  +|. |. ++++...+|.+..|.+.   .+.    .+..+. -...+..+++++....|+.+-.+.-|..++..
T Consensus       131 YGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         131 YGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             eEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEec
Confidence            56666  665 43 56677789999888763   222    233443 35678899999999999999888777777664


Q ss_pred             C-----ceeeEec-----cCCceeEEEc--CC--c-eEEEE-cCCcEEEEcCCC
Q 041916          133 K-----YEVLQTL-----PGHAKTLDFS--QK--G-LLAVG-TGSFVQILGDFS  170 (359)
Q Consensus       133 ~-----~~~~~~~-----~~~i~~~~~s--~~--g-l~~~~-~d~~i~i~d~~~  170 (359)
                      .     ...+...     .+.+-.|++-  ++  | +++.+ .+++..+||...
T Consensus       210 ~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         210 PDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             TTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             cCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            2     2222222     3345666643  33  3 44444 458999999544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.04  E-value=0.59  Score=38.97  Aligned_cols=111  Identities=13%  Similarity=0.150  Sum_probs=69.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCcc--eEEEe-ccCCCeEEEEEcCCCCEEEEEeCC-Ce
Q 041916           61 GRTDVMRVNPFNGVVSLGHSGG-----------TVTMWKPTTAAP--LIKML-CHQGPVSALAFHPNGHLMATSGKE-CK  125 (359)
Q Consensus        61 ~~v~~~~~sp~~~~l~sg~~dg-----------~v~lwd~~~~~~--~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d-~~  125 (359)
                      .++...+...+|++++.|+.+.           .+.+||+.+++-  ...+. .+.....+.++.++|.+++.|+.+ ..
T Consensus        20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence            3444455556778887777421           377999987642  22222 333334567888999999888765 58


Q ss_pred             EEEEEcCCceeeE--ecc--CCceeEEEcCCc-eEE-EEcC------CcEEEEcCCCC
Q 041916          126 IKIWDLRKYEVLQ--TLP--GHAKTLDFSQKG-LLA-VGTG------SFVQILGDFSG  171 (359)
Q Consensus       126 i~iwd~~~~~~~~--~~~--~~i~~~~~s~~g-l~~-~~~d------~~i~i~d~~~~  171 (359)
                      +.+||..+..-..  .+.  ..-.+++..++| +++ ++.+      ..+.+||+.+.
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            9999998765432  221  223567778888 444 4321      46899997654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.89  E-value=1  Score=38.84  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--Ee------ccCCCeEEEEEcCC---CCEEEE
Q 041916           54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK--ML------CHQGPVSALAFHPN---GHLMAT  119 (359)
Q Consensus        54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~--~~------~h~~~v~~i~~~~~---~~~l~~  119 (359)
                      ..+.......++|+|.|++++|++--.+|.|.+++..++.....  +.      .-.+....|+|+|+   ..+++.
T Consensus        20 ~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            33444456778999999999888765579999998877653221  11      12345788999994   445544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.80  E-value=0.21  Score=43.11  Aligned_cols=100  Identities=10%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCceeeEe-ccC-CceeEEEcCCc--eEEEEcC---------------
Q 041916          105 VSALAFHPNGHLMATS-GKE----CKIKIWDLRKYEVLQT-LPG-HAKTLDFSQKG--LLAVGTG---------------  160 (359)
Q Consensus       105 v~~i~~~~~~~~l~~~-~~d----~~i~iwd~~~~~~~~~-~~~-~i~~~~~s~~g--l~~~~~d---------------  160 (359)
                      +..++++|++++++.+ +.+    ..|+++|+.+++.+.. +.. ....++|++++  ++-...+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            4456789999998754 323    3799999999987643 322 34689999998  4433321               


Q ss_pred             -CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916          161 -SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH  205 (359)
Q Consensus       161 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  205 (359)
                       ..|..+.+.+....-..+..... ....+..+..++++++++...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d-~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPD-EPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEECCCCcccccccccccc-CCceEEeeeccCCcceeeEEe
Confidence             25777776554222112211111 122466778889999877543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=3.5  Score=32.15  Aligned_cols=50  Identities=20%  Similarity=0.161  Sum_probs=25.4

Q ss_pred             CeEEEe-CCCcEEEEeccCC--Ce-EEEEEecCCCEEEEEec---------CCeEEEEECCCCeE
Q 041916            1 YPYIYN-RDGTELHCLKEHG--AV-LKLQFLRNHFLLASINK---------FGQLRYQDVTMGEI   52 (359)
Q Consensus         1 ~v~iwd-~~g~~~~~l~~h~--~~-~~l~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~   52 (359)
                      +|.+|| .+++ -..+..-.  .. .+++.. ++.+++.|+.         -..+.+||..+...
T Consensus        20 ~~~~yd~~t~~-W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w   82 (288)
T d1zgka1          20 YLEAYNPSNGT-WLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW   82 (288)
T ss_dssp             CEEEEETTTTE-EEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             eEEEEECCCCe-EEECCCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence            367888 4443 22332211  12 333332 5566666552         24677888876654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.44  E-value=9.1  Score=28.93  Aligned_cols=177  Identities=15%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE------------
Q 041916           29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI------------   96 (359)
Q Consensus        29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~------------   96 (359)
                      +.++|+++...|.+.++-+..++.+..-+   .+|....- |..      +-|-.+.+-|+..|+..+            
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-Pk~------~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-PHY------GVGRVILVRDVSKGAEQHALFKVNTSRPGE   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-ECT------TBSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-Ccc------CcceEEEEeehhcCcceeeEEEEccCCCCe
Confidence            44578888789999999988777554322   34433221 111      112222333333333222            


Q ss_pred             --EEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee--Eecc----------CCceeEEEcCCc---eEEEE
Q 041916           97 --KMLCHQ-GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL--QTLP----------GHAKTLDFSQKG---LLAVG  158 (359)
Q Consensus        97 --~~~~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~----------~~i~~~~~s~~g---l~~~~  158 (359)
                        .+.... -.|.+++.. +-+..++|+......+|-+..|+..  ..++          ..|..+.+-..+   ++++.
T Consensus        95 E~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~ad  173 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSN  173 (313)
T ss_dssp             EEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             eeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEe
Confidence              222211 234555543 3455667777667788877766532  2221          233333332222   55555


Q ss_pred             c-CCcEEEEcCCCCC----------Ccccee----------ecc--------cC-------CCCcceEEEEEeeCCCEEE
Q 041916          159 T-GSFVQILGDFSGS----------HNYSRY----------MGH--------SM-------VKGYQIGKVSFRPYEDVLG  202 (359)
Q Consensus       159 ~-d~~i~i~d~~~~~----------~~~~~~----------~~~--------~~-------~~~~~v~~~~~~p~~~~l~  202 (359)
                      . .|.++|++...+.          +...-+          ...        ..       .....|+-+-+.|++++++
T Consensus       174 l~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         174 LSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             TTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             cccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEE
Confidence            4 5677776643221          000000          000        00       0011345566899999999


Q ss_pred             EEcCCCeEEEEEcC
Q 041916          203 IGHSMGWSSILVPG  216 (359)
Q Consensus       203 ~~~~dg~~~i~~~~  216 (359)
                      ++-.||...+|.-|
T Consensus       254 iakrdG~s~lF~nG  267 (313)
T d2hu7a1         254 VARREGRSAVFIDG  267 (313)
T ss_dssp             EEEETTEEEEEETT
T ss_pred             EEecCCchheeecc
Confidence            99999999988754