Citrus Sinensis ID: 041933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MIAGSEYGDLPWRVRRSFLEENDVELLENNSSLILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHETDTGQSMHTTSPQDPSGKEK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHccHHHHHHHcccccccccEEEEccccccccccccccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEcccccHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
miagseygdlpwrVRRSFLEENDVELLENNSSLILAANrthrkdpldhfkyykggwnisekhdfssvgftaAPLFLIAAIWFLGFGLSLLIKCLYHcccqrrdtaTAQETLSQSKDVTSKLVGVVNFFISnvanknipptvgppnyynqsgplvpilcnpfnsdrtdrncpdgevnfSNAAQEWGKYICevsengvcttvgrltpAFYDQMVAIVNVSYALyrhvpplvevadctfvrvtfggitehycpdlrlySKWIVIGLVIVSAAVMLSLIFIFWVFYARkrrhetdtgqsmhttspqdpsgkek
Flexible Loop (DISEMBL)
miagseygdlpwrvRRSFLEENDVELLENNSSLIlaanrthrkdplDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAqetlsqskdvtsKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHetdtgqsmhttspqdpsgkek
Low Complexity Region (SEG)
MIAGSEYGDLPWRVRRSFleendvellennsslILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHETDTGQSMHTTSPQDPSGKEK
Disordered region (IsUnstruct)
********DLPWRVRRSFLEENDVELLENNSSLILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTAT*********DVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYAR*************************
Disordered Region (DISOPRED)
********DLPWRVR********************AANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYA**************************
Disordered Region (DISEMBL)
MIAGSEYGDLPWRVRRSFLEENDVELLENNSSLILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRH*********************
Disordered Region (DISPRO)
******YGDLPWRVRRSFLEENDVELLENNSSLILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHE********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAGSEYGDLPWRVRRSFLEENDVELLENNSSLILAANRTHRKDPLDHFKYYKGGWNISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFYARKRRHETDTGQSMHTTSPQDPSGKEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
224142471	550	predicted protein [Populus trichocarpa]	0.624	0.350	0.622	4e-63
225463055	551	PREDICTED: uncharacterized protein LOC10	0.618	0.346	0.597	4e-60
449457947	536	PREDICTED: uncharacterized protein LOC10	0.621	0.358	0.572	1e-58
356556557	539	PREDICTED: uncharacterized protein LOC10	0.611	0.350	0.598	3e-58
255636107	279	unknown [Glycine max]	0.611	0.677	0.598	9e-58
224143225	503	predicted protein [Populus trichocarpa]	0.611	0.375	0.583	6e-57
297743581	513	unnamed protein product [Vitis vinifera]	0.592	0.356	0.593	2e-56
225443053	584	PREDICTED: uncharacterized protein LOC10	0.592	0.313	0.593	2e-56
356507542	542	PREDICTED: uncharacterized protein LOC10	0.647	0.369	0.541	3e-56
356515208	545	PREDICTED: uncharacterized protein LOC10	0.647	0.366	0.546	6e-56

>gi|224142471|ref|XP_002324581.1| predicted protein [Populus trichocarpa] gi|222866015|gb|EEF03146.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 146/196 (74%), Gaps = 3/196 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETL Q+K+ T +LV VV++ +SNV+N+N PP  G   YYNQSGPL+P+LCNPFN
Sbjct: 350 DNATAQETLRQTKETTYQLVNVVDYVVSNVSNRNFPPQAGDL-YYNQSGPLMPVLCNPFN 408

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           SD TDR C  GEV+ SNA Q W  YIC+VS + +C T GRLTP+ Y+QM + VN+SY L 
Sbjct: 409 SDFTDRKCAAGEVDLSNATQVWKNYICQVSSSEICITPGRLTPSLYNQMESAVNLSYGLN 468

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
           R+ P LV + DCTFVR TF  I+  YCPDLR YS+WI IGLVIVSAAVMLSL  IFWV Y
Sbjct: 469 RYGPFLVNLEDCTFVRETFTKISHSYCPDLRRYSQWIYIGLVIVSAAVMLSL--IFWVIY 526

Query: 283 ARKRRHETDTGQSMHT 298
           AR+RRH   T Q M +
Sbjct: 527 ARERRHRVYTKQFMSS 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463055|ref|XP_002268417.1| PREDICTED: uncharacterized protein LOC100267143 [Vitis vinifera] gi|296084555|emb|CBI25576.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 143/194 (73%), Gaps = 3/194 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETL ++KDVT +LV VVN  I+NV+N N  P    P Y+NQSGPLVP+LCNPFN
Sbjct: 348 DNATAQETLLRTKDVTYQLVTVVNTVITNVSNINFAPNF-VPLYFNQSGPLVPVLCNPFN 406

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           +D T R C  GEV+  NA Q W  Y+C+VS +G+CTT GRLTP++Y+QM A VN+SY LY
Sbjct: 407 ADLTARQCSAGEVDLDNATQVWSNYVCQVSASGICTTPGRLTPSYYNQMAAAVNISYGLY 466

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P LV++ DCTFVR TF  I++ +CP+LR YSKWI  GLV+VS AVM+SL  IFWV Y
Sbjct: 467 HYGPYLVDLQDCTFVRQTFTVISDDHCPELRKYSKWIYTGLVMVSVAVMMSL--IFWVIY 524

Query: 283 ARKRRHETDTGQSM 296
           AR+RRH   T   M
Sbjct: 525 ARERRHRVYTKTHM 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457947|ref|XP_004146709.1| PREDICTED: uncharacterized protein LOC101216821 [Cucumis sativus] gi|449516629|ref|XP_004165349.1| PREDICTED: uncharacterized protein LOC101229697 [Cucumis sativus]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 139/194 (71%), Gaps = 2/194 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETL+QSK+V  +LV VVN  I+ ++N N PP+ G P Y+NQSGP +PILCNPF 
Sbjct: 340 DNATAQETLTQSKNVAFQLVDVVNNVITGISNANFPPSAGAPFYFNQSGPSMPILCNPFY 399

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           ++ TDR C  GEV   NA   W  ++CE S +G+CTT GRLTP +Y QM A VNV++ LY
Sbjct: 400 ANLTDRLCASGEVELGNATVVWKNFVCEASASGICTTPGRLTPTYYSQMTAAVNVTFGLY 459

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
           ++ P LV + DC+FVR TF  I ++YCP L  Y++WI IGLV+VSAAVMLSL  IFWV Y
Sbjct: 460 KYGPYLVSLQDCSFVRQTFTDIQDNYCPGLGRYTQWIYIGLVMVSAAVMLSL--IFWVIY 517

Query: 283 ARKRRHETDTGQSM 296
           AR+RRH   T   M
Sbjct: 518 ARERRHRVYTKSHM 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556557|ref|XP_003546591.1| PREDICTED: uncharacterized protein LOC100809927 [Glycine max]

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 141/192 (73%), Gaps = 3/192 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETL +++DVT +LV +V+  +SNV N+N+PP    P YYNQSGPL+P LCNPFN
Sbjct: 347 DNATAQETLLRTRDVTHQLVNLVDNIVSNVTNRNLPPA-AVPLYYNQSGPLMPRLCNPFN 405

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           SD T+R+C DGEV+  NAA+ W  Y CEVS +G+C T GR+TP  Y QM A VNVSY LY
Sbjct: 406 SDLTNRSCADGEVSLDNAAEVWKNYTCEVSSSGICKTPGRMTPTIYGQMEAAVNVSYGLY 465

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P LV++ DCTFVR TF  I+  +CP L+  S+ I IGLV+VSAAVMLSL  IFWV Y
Sbjct: 466 HYGPFLVDLQDCTFVRKTFTDISNDHCPGLQRNSQLIYIGLVLVSAAVMLSL--IFWVIY 523

Query: 283 ARKRRHETDTGQ 294
           AR+RRH   T Q
Sbjct: 524 ARERRHRVYTKQ 535

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636107|gb|ACU18398.1| unknown [Glycine max]

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 141/192 (73%), Gaps = 3/192 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETL +++DVT +LV +V+  +SNV N+N+PP    P YYNQSGPL+P LCNPFN
Sbjct: 87  DNATAQETLLRTRDVTHQLVNLVDNIVSNVTNRNLPPA-AVPLYYNQSGPLMPRLCNPFN 145

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           SD T+R+C DGEV+  NAA+ W  Y CEVS +G+C T GR+TP  Y QM A VNVSY LY
Sbjct: 146 SDLTNRSCADGEVSLDNAAEVWKNYTCEVSSSGICKTPGRMTPTIYGQMEAAVNVSYGLY 205

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P LV++ DCTFVR TF  I+  +CP L+  S+ I IGLV+VSAAVMLSL  IFWV Y
Sbjct: 206 HYGPFLVDLQDCTFVRKTFTDISNDHCPGLQRNSQLIYIGLVLVSAAVMLSL--IFWVIY 263

Query: 283 ARKRRHETDTGQ 294
           AR+RRH   T Q
Sbjct: 264 ARERRHRVYTKQ 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143225|ref|XP_002324886.1| predicted protein [Populus trichocarpa] gi|222866320|gb|EEF03451.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 136/192 (70%), Gaps = 3/192 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D AT Q+TL +SK++TS+LV VVN  I+NV+N N  P    P Y NQSGPLVPILCNPF 
Sbjct: 300 DQATTQDTLIKSKEITSQLVEVVNQVITNVSNLNFSPNF-KPMYINQSGPLVPILCNPFY 358

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
           +D T R C  GEV+ +NA Q W  Y+C+VS +G+C T GRLTPAFY QM A +NVSY L 
Sbjct: 359 ADLTIRPCSAGEVDLTNATQVWSSYVCQVSPSGICATTGRLTPAFYSQMSAAINVSYGLN 418

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P L+E+ DCTF R TF  I + +CP LR YS+WI IGLV+VS AVMLSL  IFWV Y
Sbjct: 419 NYAPFLIELGDCTFARETFSDIYKDHCPSLRRYSRWIYIGLVMVSTAVMLSL--IFWVIY 476

Query: 283 ARKRRHETDTGQ 294
            R+RRH   + Q
Sbjct: 477 GRERRHRVYSKQ 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743581|emb|CBI36448.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 138/187 (73%), Gaps = 4/187 (2%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIP--PTVGPPNYYNQSGPLVPILCNP 160
           D ATAQETL+QSKDVT +LV VVN FI+NV+NKN+P    + P   YNQ+GPLVP+LCNP
Sbjct: 304 DNATAQETLAQSKDVTFQLVNVVNNFITNVSNKNLPTQAKLEPSVSYNQTGPLVPVLCNP 363

Query: 161 FNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYA 220
           +  ++T R C  GEV+F+NAAQEW KYICEVS +G+CTT GRLTP  Y+QM    NVS A
Sbjct: 364 YQPNKTRRVCEAGEVDFNNAAQEWNKYICEVSADGICTTPGRLTPKHYNQMSTAANVSSA 423

Query: 221 LYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWV 280
           LY H P LV++ DC+FVR  F  I + +CP LR YS+WI IGL +VS+AV+LS   I W+
Sbjct: 424 LYHHGPFLVDLQDCSFVRRIFTDIIKDHCPGLRRYSEWICIGLTMVSSAVLLS--SIIWI 481

Query: 281 FYARKRR 287
            Y R +R
Sbjct: 482 SYTRLKR 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443053|ref|XP_002269483.1| PREDICTED: uncharacterized protein LOC100255938 [Vitis vinifera]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 138/187 (73%), Gaps = 4/187 (2%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIP--PTVGPPNYYNQSGPLVPILCNP 160
           D ATAQETL+QSKDVT +LV VVN FI+NV+NKN+P    + P   YNQ+GPLVP+LCNP
Sbjct: 375 DNATAQETLAQSKDVTFQLVNVVNNFITNVSNKNLPTQAKLEPSVSYNQTGPLVPVLCNP 434

Query: 161 FNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYA 220
           +  ++T R C  GEV+F+NAAQEW KYICEVS +G+CTT GRLTP  Y+QM    NVS A
Sbjct: 435 YQPNKTRRVCEAGEVDFNNAAQEWNKYICEVSADGICTTPGRLTPKHYNQMSTAANVSSA 494

Query: 221 LYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWV 280
           LY H P LV++ DC+FVR  F  I + +CP LR YS+WI IGL +VS+AV+LS   I W+
Sbjct: 495 LYHHGPFLVDLQDCSFVRRIFTDIIKDHCPGLRRYSEWICIGLTMVSSAVLLS--SIIWI 552

Query: 281 FYARKRR 287
            Y R +R
Sbjct: 553 SYTRLKR 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507542|ref|XP_003522523.1| PREDICTED: uncharacterized protein LOC100798323 [Glycine max]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 141/203 (69%), Gaps = 3/203 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETLS+SK+VTS+LV +VN  I+NV+N N  P   P  YYNQSGPL+P+LCNPF+
Sbjct: 330 DNATAQETLSRSKEVTSELVNLVNQVITNVSNLNFAPNFTPL-YYNQSGPLMPLLCNPFH 388

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
            D TDR C  GEV  SNA Q +G ++C VS + +C T GRLTP FY+Q+ A +NV  +LY
Sbjct: 389 PDMTDRQCDAGEVTLSNATQVYGNFVCRVSPSEICMTQGRLTPTFYNQISAGINVGNSLY 448

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P L+E+ DCTFVR T   I++ +CPDLR +S+WI IGLV+VS AVM SL  IFW+ Y
Sbjct: 449 NYAPSLIELQDCTFVRETLSDISKDHCPDLRRHSRWIYIGLVMVSFAVMFSL--IFWIVY 506

Query: 283 ARKRRHETDTGQSMHTTSPQDPS 305
            R+RRH     +S        P+
Sbjct: 507 GRERRHRLHRKESKDLIPAHAPA 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515208|ref|XP_003526293.1| PREDICTED: uncharacterized protein LOC100816139 [Glycine max]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 141/203 (69%), Gaps = 3/203 (1%)

Query: 103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
           D ATAQETLS+SK+VTS+LV +VN  I+NV+N N  P   P  YYNQSGPL+P+LCNPF+
Sbjct: 331 DNATAQETLSRSKEVTSELVNLVNQVITNVSNLNFAPNFTPL-YYNQSGPLMPLLCNPFH 389

Query: 163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
            D TDR C  GEV  SNA Q +G ++C+VS + +C T GRLTP FY+Q+ A +NV  ALY
Sbjct: 390 PDMTDRQCDAGEVTLSNATQVYGNFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALY 449

Query: 223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
            + P L+E+ DCTFVR T   I+  +CP L+ YS+WI IGLV+VS AVM SL  IFW+ Y
Sbjct: 450 DYAPSLIELQDCTFVRETLSDISRDHCPGLQRYSRWIYIGLVMVSFAVMFSL--IFWIVY 507

Query: 283 ARKRRHETDTGQSMHTTSPQDPS 305
            R+RRH     +S   T    P+
Sbjct: 508 GRERRHRLYRKESKDFTPTHAPA 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2046079	541	AT2G12400 "AT2G12400" [Arabido	0.637	0.364	0.504	5.9e-76
TAIR|locus:2059567	545	AT2G25270 [Arabidopsis thalian	0.601	0.341	0.518	5.2e-75
TAIR|locus:2198923	538	AT1G80540 "AT1G80540" [Arabido	0.640	0.368	0.454	1.6e-61
TAIR|locus:2026276	557	AT1G71110 "AT1G71110" [Arabido	0.592	0.328	0.470	2.8e-41
TAIR|locus:2158581	509	AT5G67550 "AT5G67550" [Arabido	0.456	0.277	0.228	7.1e-09

TAIR|locus:2046079 AT2G12400 "AT2G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
 Identities = 102/202 (50%), Positives = 140/202 (69%)

Query:   103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
             D ATA+ETL+++K VT +LV +++  ISN+ N+N PP   P  YYNQSGPL+P+LCNPFN
Sbjct:   339 DNATARETLTRTKLVTYQLVNLLDNAISNMTNRNFPPQFRPL-YYNQSGPLMPLLCNPFN 397

Query:   163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
             +D +DR C  G+V+ +NA + W  + C++   G C+T GRLTP  Y QM A VNVSY LY
Sbjct:   398 ADLSDRQCQPGQVHLNNATEVWKNFTCQIVTPGTCSTPGRLTPKLYSQMAAAVNVSYGLY 457

Query:   223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
             ++ P L ++  C FVR TF  I   +CP L+ Y++WI +GLV+VSA+VM SL+F  WV Y
Sbjct:   458 KYGPFLADLQGCDFVRSTFTDIERDHCPGLKRYTQWIYVGLVVVSASVMSSLVF--WVIY 515

Query:   283 ARKRRHETDTGQ--SMHTTSPQ 302
             AR+RRH   T    +MH+  P+
Sbjct:   516 ARERRHRVYTKDYNAMHSEDPR 537

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2059567 AT2G25270 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
 Identities = 98/189 (51%), Positives = 136/189 (71%)

Query:   103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
             D ATAQETL +S++VT +LV ++N  I+NV+N N  P V  P YYNQSGPL+P+LCNPFN
Sbjct:   344 DNATAQETLMRSREVTGQLVELINTVITNVSNINFSP-VFVPMYYNQSGPLLPLLCNPFN 402

Query:   163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
              D TDR+C  G+++ +NA + W  ++C+VS+NG CTT GRLTPA Y QM + VN+S  L 
Sbjct:   403 HDLTDRSCSPGDLDLNNATEAWTSFVCQVSQNGTCTTTGRLTPALYSQMASGVNISTGLI 462

Query:   223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
             R  P LV++ DC++ + TF  IT  +CP L+ Y  W+ +GL I++ AVMLSL+F  W+ Y
Sbjct:   463 RDAPFLVQLQDCSYAKQTFRDITNDHCPGLQRYGYWVYVGLAILATAVMLSLMF--WIIY 520

Query:   283 ARKRRHETD 291
             +R+RRH  +
Sbjct:   521 SRERRHRKE 529

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=RCA

GO:0045787 "positive regulation of cell cycle" evidence=RCA

TAIR|locus:2198923 AT1G80540 "AT1G80540" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 96/211 (45%), Positives = 128/211 (60%)

Query:    87 LSLLIKCLYHCCCQRRDTATAQETLSQSKDVTSKLVGVVNFFISNVANKN-IPPTVGPPN 145
             LS L+ CL        D  T  ETL  +K +T+  V + N +  NV+N +  PP    P 
Sbjct:   334 LSQLLPCL--------DPKTIGETLDITKTMTATAVDMTNAYTVNVSNHDQFPPNA--PF 383

Query:   146 YYNQSGPLVPILCNPFNSDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTP 205
             Y+NQSGPLVP+LCNP + +   R C   EV  +NA+Q +  YIC+V+  G+CTT GRLT 
Sbjct:   384 YHNQSGPLVPLLCNPLDQNHKPRPCAPDEVLLANASQVYKGYICQVNAEGICTTQGRLTQ 443

Query:   206 AFYDQMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVI 265
               YDQM+  +NV++ L  + P L  +ADCTFVR TF  IT   CP L + S+WI  GL  
Sbjct:   444 GSYDQMMGAINVAFTLDHYGPFLASIADCTFVRDTFRDITTKNCPGLSITSQWIYAGLAS 503

Query:   266 VSAAVMLSLIFIFWVFYARKRRHETDTGQSM 296
             +S AVM SLIF  W+ + R+RRH + T +SM
Sbjct:   504 LSGAVMFSLIF--WLIFVRERRHRSQTKKSM 532

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026276 AT1G71110 "AT1G71110" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 88/187 (47%), Positives = 116/187 (62%)

Query:   103 DTATAQETLSQSKDVTSKLVGVVNFFISNVANKNIPPTVGPPNYYNQSGPLVPILCNPFN 162
             D  T  +TLSQSK V + +V VVN F+  VAN N  P  G   YYNQSGP +P LC PF+
Sbjct:   340 DQQTTNQTLSQSKVVINSIVTVVNTFVYAVANTN--PAPGQDRYYNQSGPPMPPLCIPFD 397

Query:   163 SDRTDRNCPDGEVNFSNAAQEWGKYICEVSENGVCTTVGRLTPAFYDQMVAIVNVSYALY 222
             ++  DR C   E++  NA+  W  Y CEV+ +G+CTTVGR+TP  + Q+VA VN SYAL 
Sbjct:   398 ANMEDRQCSPWELSIENASSVWENYKCEVTPSGICTTVGRVTPDTFGQLVAAVNESYALE 457

Query:   223 RHVPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVIGLVIVSAAVMLSLIFIFWVFY 282
              + PPL+   DC FVR TF  IT  YCP L    + +  GL ++S  V+L L+   W+FY
Sbjct:   458 HYTPPLLSFRDCNFVRETFMSITSDYCPPLVRNLRIVNAGLGLISVGVLLCLVL--WIFY 515

Query:   283 ARKRRHE 289
             A + + E
Sbjct:   516 ANRPQRE 522

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158581 AT5G67550 "AT5G67550" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
 Identities = 35/153 (22%), Positives = 65/153 (42%)

Query:   156 ILCNPFNSDR----TDRNCPDGEVNFSNAAQEWGKYICEVSENG-VCTTVGRLTP-AFYD 209
             I+C+PF   +    T ++C +G +          ++ C   +    C   G+  P A Y 
Sbjct:   352 IICDPFVGQQINSYTPQSCSNGAIPIGEFPNILSRFTCHDKDPPETCRITGKFIPEAAYL 411

Query:   210 QMVAIVNVSYALYRHVPPLVEVADCTFVRVTFGGITEHYCPDLR--LYSKWIVIGLVIVS 267
             ++ A  N +  +   +P    + +C  V+ T   I  + C   R  +Y  W  I L +  
Sbjct:   412 KVYAYSNSAQGMLDILPSFQNLTECLAVKDTLSSIVSNQCDPFRASMYRLWASI-LALSL 470

Query:   268 AAVMLSLIFIFWVFYARKRRHETDTGQSMHTTS 300
               V+L L+F+   F   + + ++    S+H TS
Sbjct:   471 IMVVLVLLFLAKAF---QEKGKSFAWFSIHPTS 500

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.3441.1 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
cd07912	418	Tweety_N N-terminal domain of the protein encoded	99.09
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	95.68
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	90.64
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	90.06
PF15099	129	PIRT: Phosphoinositide-interacting protein family	81.39

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=99.09  E-value=8e-11  Score=117.16  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=37.8

Q ss_pred             cCCCCcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccC
Q 041933           57 NISEKHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQR  101 (309)
Q Consensus        57 ni~~~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~  101 (309)
                      |-.|+|||+||+|||+    +|++||+++|++++++|||+|||++
T Consensus        29 ~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~   69 (418)
T cd07912          29 NPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRK   69 (418)
T ss_pred             CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3449999999999999    9999999999999999999999977

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=95.68  E-value=0.018  Score=57.46  Aligned_cols=37  Identities=14%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             CcCccccccchhhHHhHhhccccCCchHHHHHHHHHH
Q 041933          225 VPPLVEVADCTFVRVTFGGITEHYCPDLRLYSKWIVI  261 (309)
Q Consensus       225 ~P~L~~L~dCtFVr~tF~~I~~~~CppLrr~sr~vw~  261 (309)
                      ...|..++||.-+++.+.+....-|-+--..+-.++.
T Consensus       331 l~~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l  367 (406)
T PF04906_consen  331 LHQLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLL  367 (406)
T ss_pred             HHHHHhhcccccHHHHHHHHHHhhccchHhHHHHHHH
Confidence            3457788999999999999999999888777766654

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=90.64  E-value=0.34  Score=48.53  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=29.8

Q ss_pred             CcceeecccchHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCHH
Q 041933           61 KHDFSSVGFTAAPLFLIAAIWFLGFGLSLLIKCLYHCCCQRRDTA  105 (309)
Q Consensus        61 ~hywaSV~ft~~p~f~~a~~Wf~~fGl~ll~~~~c~Ccc~~~D~a  105 (309)
                      +.-|.-++|+..-+|++.+.| ++.|+-+....-=-.+|...|.-
T Consensus       210 ~Sk~~li~~~v~gll~lvisW-~~~g~~la~aV~~SDFC~~Pd~~  253 (406)
T PF04906_consen  210 QSKCLLIVFSVLGLLALVISW-ISLGLELAAAVGLSDFCVDPDTY  253 (406)
T ss_pred             cCcceEEEeeeccHHHHHHHH-HHHHHHHHhccchhhhccCHHHH
Confidence            344677778888888888888 44777777666666666655443

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=90.06  E-value=0.54  Score=50.81  Aligned_cols=29  Identities=14%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041933          247 HYCPDLRLYSKWIVIGLVIVSAAVMLSLI  275 (309)
Q Consensus       247 ~~CppLrr~sr~vw~GL~llS~avmLlli  275 (309)
                      ..=|-.++|-+.-|.+-+.++..++|.++
T Consensus       401 ~~~~~~~~y~~yR~~~~lil~~~llLIv~  429 (806)
T PF05478_consen  401 SFEDEYEKYDSYRWIVGLILCCVLLLIVL  429 (806)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888887777777666655

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF15099 PIRT: Phosphoinositide-interacting protein family

Probab=81.39  E-value=0.69  Score=40.30  Aligned_cols=30  Identities=27%  Similarity=0.502  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhcccccc
Q 041933          260 VIGLVIVSAAVMLSLIF-IFWVFYARKRRHE  289 (309)
Q Consensus       260 w~GL~llS~avmLlli~-~~Wvv~ar~rr~r  289 (309)
                      ..|++++|+++||++.+ +.|+.+-|+++.|
T Consensus        82 ~~G~vlLs~GLmlL~~~alcW~~~~rkK~~k  112 (129)
T PF15099_consen   82 IFGPVLLSLGLMLLACSALCWKPIIRKKKKK  112 (129)
T ss_pred             hehHHHHHHHHHHHHhhhheehhhhHhHHHH
Confidence            67999999999999987 6799877655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00